data_3UCG # _entry.id 3UCG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UCG pdb_00003ucg 10.2210/pdb3ucg/pdb RCSB RCSB068579 ? ? WWPDB D_1000068579 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 422572 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3UCG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title ;Crystal structure of a RNA binding domain of Hypothetical POLYADENYLATE-BINDING PROTEIN (PABPN1) from Homo sapiens at 1.95 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology' 2 ? # _cell.entry_id 3UCG _cell.length_a 92.678 _cell.length_b 92.678 _cell.length_c 92.678 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UCG _symmetry.Int_Tables_number 197 _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Polyadenylate-binding protein 2' 9893.984 1 ? ? 'RNA binding domain' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 6 water nat water 18.015 57 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;PABP-2, Poly(A)-binding protein 2, Nuclear poly(A)-binding protein 1, Poly(A)-binding protein II, PABII, Polyadenylate-binding nuclear protein 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ IKVIPKRTNRPGI ; _entity_poly.pdbx_seq_one_letter_code_can ;GMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI PKRTNRPGI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 422572 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLU n 1 4 ALA n 1 5 ASP n 1 6 ALA n 1 7 ARG n 1 8 SER n 1 9 ILE n 1 10 TYR n 1 11 VAL n 1 12 GLY n 1 13 ASN n 1 14 VAL n 1 15 ASP n 1 16 TYR n 1 17 GLY n 1 18 ALA n 1 19 THR n 1 20 ALA n 1 21 GLU n 1 22 GLU n 1 23 LEU n 1 24 GLU n 1 25 ALA n 1 26 HIS n 1 27 PHE n 1 28 HIS n 1 29 GLY n 1 30 CYS n 1 31 GLY n 1 32 SER n 1 33 VAL n 1 34 ASN n 1 35 ARG n 1 36 VAL n 1 37 THR n 1 38 ILE n 1 39 LEU n 1 40 CYS n 1 41 ASP n 1 42 LYS n 1 43 PHE n 1 44 SER n 1 45 GLY n 1 46 HIS n 1 47 PRO n 1 48 LYS n 1 49 GLY n 1 50 PHE n 1 51 ALA n 1 52 TYR n 1 53 ILE n 1 54 GLU n 1 55 PHE n 1 56 SER n 1 57 ASP n 1 58 LYS n 1 59 GLU n 1 60 SER n 1 61 VAL n 1 62 ARG n 1 63 THR n 1 64 SER n 1 65 LEU n 1 66 ALA n 1 67 LEU n 1 68 ASP n 1 69 GLU n 1 70 SER n 1 71 LEU n 1 72 PHE n 1 73 ARG n 1 74 GLY n 1 75 ARG n 1 76 GLN n 1 77 ILE n 1 78 LYS n 1 79 VAL n 1 80 ILE n 1 81 PRO n 1 82 LYS n 1 83 ARG n 1 84 THR n 1 85 ASN n 1 86 ARG n 1 87 PRO n 1 88 GLY n 1 89 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC010939, PAB2, PABP2, PABPN1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PABP2_HUMAN _struct_ref.pdbx_db_accession Q86U42 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP KRTNRPGI ; _struct_ref.pdbx_align_begin 167 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UCG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86U42 _struct_ref_seq.db_align_beg 167 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 254 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 167 _struct_ref_seq.pdbx_auth_seq_align_end 254 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3UCG _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q86U42 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3UCG # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.35 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 63.31 _exptl_crystal.description 'DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND ' _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.0M (NH4)2SO4, 2.0% PEG-400, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (ho rizontal focusing)' _diffrn_detector.pdbx_collection_date 2011-07-21 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97925 1.0 3 0.97894 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97925,0.97894 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3UCG _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 29.307 _reflns.number_obs 9771 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_netI_over_sigmaI 18.080 _reflns.percent_possible_obs 99.200 _reflns.B_iso_Wilson_estimate 37.166 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.950 2.020 6902 ? 1820 0.771 1.8 ? ? ? ? ? 97.200 1 1 2.020 2.100 7091 ? 1859 0.523 2.6 ? ? ? ? ? 99.600 2 1 2.100 2.200 7497 ? 1954 0.330 4.1 ? ? ? ? ? 99.300 3 1 2.200 2.310 6722 ? 1748 0.234 5.7 ? ? ? ? ? 99.400 4 1 2.310 2.460 7463 ? 1943 0.177 7.8 ? ? ? ? ? 99.600 5 1 2.460 2.650 7279 ? 1898 0.117 11.4 ? ? ? ? ? 99.700 6 1 2.650 2.910 6934 ? 1801 0.075 16.9 ? ? ? ? ? 99.600 7 1 2.910 3.330 7240 ? 1870 0.041 28.6 ? ? ? ? ? 99.300 8 1 3.330 4.190 7185 ? 1876 0.024 46.1 ? ? ? ? ? 99.700 9 1 4.190 ? 7216 ? 1881 0.019 55.3 ? ? ? ? ? 98.900 10 1 # _refine.entry_id 3UCG _refine.ls_d_res_high 1.9500 _refine.ls_d_res_low 29.307 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5100 _refine.ls_number_reflns_obs 9767 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5.PEG-400 FRAGMENTS (PEG AND PGE) AND SULFATE (SO4) FROM THE CRYSTALLIZATION SOLUTION AND 1,2-ETHANEDIOL (EDO) FROM THE CRYOPROTECTANT HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1650 _refine.ls_R_factor_R_work 0.1629 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2096 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 470 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 53.3522 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc 0.9700 _refine.correlation_coeff_Fo_to_Fc_free 0.9510 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.1220 _refine.overall_SU_ML 0.0940 _refine.overall_SU_B 6.4850 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 183.120 _refine.B_iso_min 29.780 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.330 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 677 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 764 _refine_hist.d_res_high 1.9500 _refine_hist.d_res_low 29.307 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 753 0.016 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 550 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1009 1.714 1.975 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1327 0.995 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 97 4.427 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 37 34.992 22.703 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 127 15.035 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 9.444 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 106 0.091 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 836 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 164 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_it 753 6.535 7.795 ? ? 'X-RAY DIFFRACTION' r_bond_other 550 1.586 8.158 ? ? 'X-RAY DIFFRACTION' r_angle_it 1004 8.617 14.160 ? ? 'X-RAY DIFFRACTION' r_angle_others 1326 5.182 15.267 ? ? 'X-RAY DIFFRACTION' r_torsion_it 269 11.522 29.725 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9510 _refine_ls_shell.d_res_low 2.0020 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.5600 _refine_ls_shell.number_reflns_R_work 645 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2290 _refine_ls_shell.R_factor_R_free 0.2910 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 680 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a RNA binding domain of polyadenylate-binding protein (PABPN1) from Homo sapiens at 1.95 A resolution' _struct.entry_id 3UCG _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;Ferredoxin-like, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, Partnership for T-Cell Biology, TCELL, RNA BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.entry_id 3UCG # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 _struct_biol.details 'PACKING ANALYSIS SUGGEST THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ARG A 7 ? GLY A 0 ARG A 172 1 ? 7 HELX_P HELX_P2 2 THR A 19 ? HIS A 28 ? THR A 184 HIS A 193 1 ? 10 HELX_P HELX_P3 3 GLY A 29 ? GLY A 31 ? GLY A 194 GLY A 196 5 ? 3 HELX_P HELX_P4 4 LYS A 58 ? LEU A 65 ? LYS A 223 LEU A 230 1 ? 8 HELX_P HELX_P5 5 ALA A 66 ? ASP A 68 ? ALA A 231 ASP A 233 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 167 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A GLU 3 N ? ? A MSE 167 A GLU 168 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 33 ? CYS A 40 ? VAL A 198 CYS A 205 A 2 GLY A 49 ? PHE A 55 ? GLY A 214 PHE A 220 A 3 SER A 8 ? GLY A 12 ? SER A 173 GLY A 177 A 4 LYS A 78 ? PRO A 81 ? LYS A 243 PRO A 246 B 1 LEU A 71 ? PHE A 72 ? LEU A 236 PHE A 237 B 2 ARG A 75 ? GLN A 76 ? ARG A 240 GLN A 241 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 39 ? N LEU A 204 O PHE A 50 ? O PHE A 215 A 2 3 O ALA A 51 ? O ALA A 216 N VAL A 11 ? N VAL A 176 A 3 4 N TYR A 10 ? N TYR A 175 O ILE A 80 ? O ILE A 245 B 1 2 N PHE A 72 ? N PHE A 237 O ARG A 75 ? O ARG A 240 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 300 ? 6 'BINDING SITE FOR RESIDUE SO4 A 300' AC2 Software A EDO 301 ? 5 'BINDING SITE FOR RESIDUE EDO A 301' AC3 Software A EDO 302 ? 3 'BINDING SITE FOR RESIDUE EDO A 302' AC4 Software A PEG 303 ? 2 'BINDING SITE FOR RESIDUE PEG A 303' AC5 Software A PGE 304 ? 2 'BINDING SITE FOR RESIDUE PGE A 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HIS A 46 ? HIS A 211 . ? 21_554 ? 2 AC1 6 PRO A 47 ? PRO A 212 . ? 21_554 ? 3 AC1 6 ARG A 62 ? ARG A 227 . ? 1_555 ? 4 AC1 6 ARG A 75 ? ARG A 240 . ? 21_554 ? 5 AC1 6 EDO C . ? EDO A 301 . ? 21_554 ? 6 AC1 6 HOH G . ? HOH A 354 . ? 1_555 ? 7 AC2 5 ASN A 13 ? ASN A 178 . ? 1_555 ? 8 AC2 5 ARG A 62 ? ARG A 227 . ? 17_544 ? 9 AC2 5 ARG A 75 ? ARG A 240 . ? 1_555 ? 10 AC2 5 GLN A 76 ? GLN A 241 . ? 1_555 ? 11 AC2 5 SO4 B . ? SO4 A 300 . ? 17_544 ? 12 AC3 3 ASN A 34 ? ASN A 199 . ? 1_555 ? 13 AC3 3 ASP A 41 ? ASP A 206 . ? 3_756 ? 14 AC3 3 GLU A 54 ? GLU A 219 . ? 1_555 ? 15 AC4 2 GLY A 1 ? GLY A 0 . ? 1_555 ? 16 AC4 2 MSE A 2 ? MSE A 167 . ? 2_775 ? 17 AC5 2 LYS A 42 ? LYS A 207 . ? 1_555 ? 18 AC5 2 ALA A 66 ? ALA A 231 . ? 17_544 ? # _atom_sites.entry_id 3UCG _atom_sites.fract_transf_matrix[1][1] 0.010790 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010790 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010790 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 167 167 MSE MSE A . n A 1 3 GLU 3 168 168 GLU GLU A . n A 1 4 ALA 4 169 169 ALA ALA A . n A 1 5 ASP 5 170 170 ASP ASP A . n A 1 6 ALA 6 171 171 ALA ALA A . n A 1 7 ARG 7 172 172 ARG ARG A . n A 1 8 SER 8 173 173 SER SER A . n A 1 9 ILE 9 174 174 ILE ILE A . n A 1 10 TYR 10 175 175 TYR TYR A . n A 1 11 VAL 11 176 176 VAL VAL A . n A 1 12 GLY 12 177 177 GLY GLY A . n A 1 13 ASN 13 178 178 ASN ASN A . n A 1 14 VAL 14 179 179 VAL VAL A . n A 1 15 ASP 15 180 180 ASP ASP A . n A 1 16 TYR 16 181 181 TYR TYR A . n A 1 17 GLY 17 182 182 GLY GLY A . n A 1 18 ALA 18 183 183 ALA ALA A . n A 1 19 THR 19 184 184 THR THR A . n A 1 20 ALA 20 185 185 ALA ALA A . n A 1 21 GLU 21 186 186 GLU GLU A . n A 1 22 GLU 22 187 187 GLU GLU A . n A 1 23 LEU 23 188 188 LEU LEU A . n A 1 24 GLU 24 189 189 GLU GLU A . n A 1 25 ALA 25 190 190 ALA ALA A . n A 1 26 HIS 26 191 191 HIS HIS A . n A 1 27 PHE 27 192 192 PHE PHE A . n A 1 28 HIS 28 193 193 HIS HIS A . n A 1 29 GLY 29 194 194 GLY GLY A . n A 1 30 CYS 30 195 195 CYS CYS A . n A 1 31 GLY 31 196 196 GLY GLY A . n A 1 32 SER 32 197 197 SER SER A . n A 1 33 VAL 33 198 198 VAL VAL A . n A 1 34 ASN 34 199 199 ASN ASN A . n A 1 35 ARG 35 200 200 ARG ARG A . n A 1 36 VAL 36 201 201 VAL VAL A . n A 1 37 THR 37 202 202 THR THR A . n A 1 38 ILE 38 203 203 ILE ILE A . n A 1 39 LEU 39 204 204 LEU LEU A . n A 1 40 CYS 40 205 205 CYS CYS A . n A 1 41 ASP 41 206 206 ASP ASP A . n A 1 42 LYS 42 207 207 LYS LYS A . n A 1 43 PHE 43 208 208 PHE PHE A . n A 1 44 SER 44 209 209 SER SER A . n A 1 45 GLY 45 210 210 GLY GLY A . n A 1 46 HIS 46 211 211 HIS HIS A . n A 1 47 PRO 47 212 212 PRO PRO A . n A 1 48 LYS 48 213 213 LYS LYS A . n A 1 49 GLY 49 214 214 GLY GLY A . n A 1 50 PHE 50 215 215 PHE PHE A . n A 1 51 ALA 51 216 216 ALA ALA A . n A 1 52 TYR 52 217 217 TYR TYR A . n A 1 53 ILE 53 218 218 ILE ILE A . n A 1 54 GLU 54 219 219 GLU GLU A . n A 1 55 PHE 55 220 220 PHE PHE A . n A 1 56 SER 56 221 221 SER SER A . n A 1 57 ASP 57 222 222 ASP ASP A . n A 1 58 LYS 58 223 223 LYS LYS A . n A 1 59 GLU 59 224 224 GLU GLU A . n A 1 60 SER 60 225 225 SER SER A . n A 1 61 VAL 61 226 226 VAL VAL A . n A 1 62 ARG 62 227 227 ARG ARG A . n A 1 63 THR 63 228 228 THR THR A . n A 1 64 SER 64 229 229 SER SER A . n A 1 65 LEU 65 230 230 LEU LEU A . n A 1 66 ALA 66 231 231 ALA ALA A . n A 1 67 LEU 67 232 232 LEU LEU A . n A 1 68 ASP 68 233 233 ASP ASP A . n A 1 69 GLU 69 234 234 GLU GLU A . n A 1 70 SER 70 235 235 SER SER A . n A 1 71 LEU 71 236 236 LEU LEU A . n A 1 72 PHE 72 237 237 PHE PHE A . n A 1 73 ARG 73 238 238 ARG ARG A . n A 1 74 GLY 74 239 239 GLY GLY A . n A 1 75 ARG 75 240 240 ARG ARG A . n A 1 76 GLN 76 241 241 GLN GLN A . n A 1 77 ILE 77 242 242 ILE ILE A . n A 1 78 LYS 78 243 243 LYS LYS A . n A 1 79 VAL 79 244 244 VAL VAL A . n A 1 80 ILE 80 245 245 ILE ILE A . n A 1 81 PRO 81 246 246 PRO PRO A . n A 1 82 LYS 82 247 247 LYS LYS A . n A 1 83 ARG 83 248 248 ARG ARG A . n A 1 84 THR 84 249 249 THR THR A . n A 1 85 ASN 85 250 250 ASN ASN A . n A 1 86 ARG 86 251 251 ARG ARG A . n A 1 87 PRO 87 252 252 PRO PRO A . n A 1 88 GLY 88 253 253 GLY GLY A . n A 1 89 ILE 89 254 ? ? ? A . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 300 300 SO4 SO4 A . C 3 EDO 1 301 301 EDO EDO A . D 3 EDO 1 302 302 EDO EDO A . E 4 PEG 1 303 303 PEG PEG A . F 5 PGE 1 304 304 PGE PGE A . G 6 HOH 1 305 305 HOH HOH A . G 6 HOH 2 306 306 HOH HOH A . G 6 HOH 3 307 307 HOH HOH A . G 6 HOH 4 308 308 HOH HOH A . G 6 HOH 5 309 309 HOH HOH A . G 6 HOH 6 310 310 HOH HOH A . G 6 HOH 7 311 311 HOH HOH A . G 6 HOH 8 312 312 HOH HOH A . G 6 HOH 9 313 313 HOH HOH A . G 6 HOH 10 314 314 HOH HOH A . G 6 HOH 11 315 315 HOH HOH A . G 6 HOH 12 316 316 HOH HOH A . G 6 HOH 13 317 317 HOH HOH A . G 6 HOH 14 318 318 HOH HOH A . G 6 HOH 15 319 319 HOH HOH A . G 6 HOH 16 320 320 HOH HOH A . G 6 HOH 17 321 321 HOH HOH A . G 6 HOH 18 322 322 HOH HOH A . G 6 HOH 19 323 323 HOH HOH A . G 6 HOH 20 324 324 HOH HOH A . G 6 HOH 21 325 325 HOH HOH A . G 6 HOH 22 326 326 HOH HOH A . G 6 HOH 23 327 327 HOH HOH A . G 6 HOH 24 328 328 HOH HOH A . G 6 HOH 25 329 329 HOH HOH A . G 6 HOH 26 330 330 HOH HOH A . G 6 HOH 27 331 331 HOH HOH A . G 6 HOH 28 332 332 HOH HOH A . G 6 HOH 29 333 333 HOH HOH A . G 6 HOH 30 334 334 HOH HOH A . G 6 HOH 31 335 335 HOH HOH A . G 6 HOH 32 336 336 HOH HOH A . G 6 HOH 33 337 337 HOH HOH A . G 6 HOH 34 338 338 HOH HOH A . G 6 HOH 35 339 339 HOH HOH A . G 6 HOH 36 340 340 HOH HOH A . G 6 HOH 37 341 341 HOH HOH A . G 6 HOH 38 342 342 HOH HOH A . G 6 HOH 39 343 343 HOH HOH A . G 6 HOH 40 344 344 HOH HOH A . G 6 HOH 41 345 345 HOH HOH A . G 6 HOH 42 346 346 HOH HOH A . G 6 HOH 43 347 347 HOH HOH A . G 6 HOH 44 348 348 HOH HOH A . G 6 HOH 45 349 349 HOH HOH A . G 6 HOH 46 350 350 HOH HOH A . G 6 HOH 47 351 351 HOH HOH A . G 6 HOH 48 352 352 HOH HOH A . G 6 HOH 49 353 353 HOH HOH A . G 6 HOH 50 354 354 HOH HOH A . G 6 HOH 51 355 355 HOH HOH A . G 6 HOH 52 356 356 HOH HOH A . G 6 HOH 53 357 357 HOH HOH A . G 6 HOH 54 358 358 HOH HOH A . G 6 HOH 55 359 359 HOH HOH A . G 6 HOH 56 360 360 HOH HOH A . G 6 HOH 57 361 361 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 167 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2810 ? 1 MORE -20 ? 1 'SSA (A^2)' 10110 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_756 -x+2,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 185.3560000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 92.6780000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-23 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2014-12-24 4 'Structure model' 1 3 2017-11-08 5 'Structure model' 1 4 2018-01-24 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 6 'Structure model' 'Database references' 6 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' citation_author 3 6 'Structure model' database_2 4 6 'Structure model' struct_conn 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_citation_author.name' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' 6 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 6 'Structure model' '_struct_ref_seq_dif.details' 8 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 101.6271 _pdbx_refine_tls.origin_y 76.7715 _pdbx_refine_tls.origin_z 51.2785 _pdbx_refine_tls.T[1][1] 0.0463 _pdbx_refine_tls.T[2][2] 0.0165 _pdbx_refine_tls.T[3][3] 0.0992 _pdbx_refine_tls.T[1][2] 0.0034 _pdbx_refine_tls.T[1][3] -0.0015 _pdbx_refine_tls.T[2][3] 0.0200 _pdbx_refine_tls.L[1][1] 4.6923 _pdbx_refine_tls.L[2][2] 2.2566 _pdbx_refine_tls.L[3][3] 4.8878 _pdbx_refine_tls.L[1][2] 1.2714 _pdbx_refine_tls.L[1][3] 0.7198 _pdbx_refine_tls.L[2][3] 0.6973 _pdbx_refine_tls.S[1][1] -0.1194 _pdbx_refine_tls.S[2][2] -0.0442 _pdbx_refine_tls.S[3][3] 0.1636 _pdbx_refine_tls.S[1][2] -0.1257 _pdbx_refine_tls.S[1][3] 0.3298 _pdbx_refine_tls.S[2][3] -0.0561 _pdbx_refine_tls.S[2][1] 0.0702 _pdbx_refine_tls.S[3][1] -0.3414 _pdbx_refine_tls.S[3][2] 0.1059 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 253 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 6, 2010' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 3UCG _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (RESIDUES 167-254) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. RESIDUE NUMBERING IS BASED ON ISOFORM 1 OF UNIPROTKB Q86U42. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NH1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ARG _pdbx_validate_symm_contact.auth_seq_id_1 227 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 A _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 EDO _pdbx_validate_symm_contact.auth_seq_id_2 301 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 21_554 _pdbx_validate_symm_contact.dist 2.08 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 178 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 70.72 _pdbx_validate_torsion.psi 44.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 251 ? CG ? A ARG 86 CG 2 1 Y 1 A ARG 251 ? CD ? A ARG 86 CD 3 1 Y 1 A ARG 251 ? NE ? A ARG 86 NE 4 1 Y 1 A ARG 251 ? CZ ? A ARG 86 CZ 5 1 Y 1 A ARG 251 ? NH1 ? A ARG 86 NH1 6 1 Y 1 A ARG 251 ? NH2 ? A ARG 86 NH2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id ILE _pdbx_unobs_or_zero_occ_residues.auth_seq_id 254 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id ILE _pdbx_unobs_or_zero_occ_residues.label_seq_id 89 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 1,2-ETHANEDIOL EDO 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'TRIETHYLENE GLYCOL' PGE 6 water HOH #