HEADER TRANSFERASE 27-OCT-11 3UCQ TITLE CRYSTAL STRUCTURE OF AMYLOSUCRASE FROM DEINOCOCCUS GEOTHERMALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOSUCRASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS GEOTHERMALIS; SOURCE 3 ORGANISM_TAXID: 319795; SOURCE 4 STRAIN: DSM 11300; SOURCE 5 GENE: DGAS, DGEO_0572; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P3 KEYWDS THERMOSTABILITY, AMYLOSE SYNTHESIS, SUCROSE ISOMERIZATION, KEYWDS 2 BETA/ALPHA-BARREL, CARBOHYDRATE BINDING, TRANSFERASE, GLYCOSIDE KEYWDS 3 HYDROLASE, GLUCOSYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.GUERIN,S.PIZZUT-SERIN,V.GUILLET,L.MOUREY,G.POTOCKI-VERONESE, AUTHOR 2 M.REMAUD-SIMEON,I.ANDRE,S.TRANIER REVDAT 3 13-SEP-23 3UCQ 1 REMARK SEQADV REVDAT 2 14-MAR-12 3UCQ 1 JRNL REVDAT 1 11-JAN-12 3UCQ 0 JRNL AUTH F.GUERIN,S.BARBE,S.PIZZUT-SERIN,G.POTOCKI-VERONESE, JRNL AUTH 2 D.GUIEYSSE,V.GUILLET,P.MONSAN,L.MOUREY,M.REMAUD-SIMEON, JRNL AUTH 3 I.ANDRE,S.TRANIER JRNL TITL STRUCTURAL INVESTIGATION OF THE THERMOSTABILITY AND PRODUCT JRNL TITL 2 SPECIFICITY OF AMYLOSUCRASE FROM THE BACTERIUM DEINOCOCCUS JRNL TITL 3 GEOTHERMALIS. JRNL REF J.BIOL.CHEM. V. 287 6642 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22210773 JRNL DOI 10.1074/JBC.M111.322917 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 47355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 179 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5129 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 602 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5494 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7477 ; 1.842 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 686 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;32.748 ;22.174 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 843 ;13.662 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 65 ;15.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 787 ; 0.148 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4320 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3320 ; 1.139 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5318 ; 1.878 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2174 ; 3.127 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2149 ; 4.543 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UCQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 115.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G5A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 285.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.75950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.75950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.65800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.10150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.65800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.10150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.75950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.65800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.10150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.75950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.65800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.10150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -57.75950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1030 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 647 REMARK 465 ALA A 648 REMARK 465 PRO A 649 REMARK 465 ALA A 650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CD OE1 OE2 REMARK 470 GLU A 238 CB CG CD OE1 OE2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 HIS A 343 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 405 CG CD OE1 OE2 REMARK 470 ARG A 471 NE CZ NH1 NH2 REMARK 470 GLN A 618 CG CD OE1 NE2 REMARK 470 ARG A 620 NE CZ NH1 NH2 REMARK 470 ARG A 627 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 630 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 838 O HOH A 1389 1.79 REMARK 500 O HOH A 941 O HOH A 1218 1.86 REMARK 500 NH1 ARG A 435 O HOH A 1062 1.92 REMARK 500 O HOH A 1345 O HOH A 1346 1.94 REMARK 500 OD1 ASP A 585 O HOH A 1199 1.97 REMARK 500 O HOH A 1114 O HOH A 1362 1.98 REMARK 500 O HOH A 1115 O HOH A 1339 1.98 REMARK 500 O HOH A 1017 O HOH A 1038 2.00 REMARK 500 O HOH A 1010 O HOH A 1396 2.04 REMARK 500 NH1 ARG A 558 O HOH A 1048 2.09 REMARK 500 O HOH A 1134 O HOH A 1330 2.11 REMARK 500 O HOH A 1091 O HOH A 1391 2.12 REMARK 500 O HOH A 1276 O HOH A 1277 2.14 REMARK 500 NH2 ARG A 409 O HOH A 1029 2.15 REMARK 500 OD2 ASP A 137 C1 GOL A 720 2.17 REMARK 500 O HOH A 1234 O HOH A 1326 2.19 REMARK 500 O HOH A 1349 O HOH A 1350 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 315 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 393 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 393 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 478 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 478 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 534 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 545 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 545 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 634 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 634 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 102 16.81 -156.37 REMARK 500 ASN A 136 23.85 -146.45 REMARK 500 ASP A 207 -161.96 -162.06 REMARK 500 PHE A 248 -124.38 -96.19 REMARK 500 LEU A 338 -66.72 -102.53 REMARK 500 ALA A 342 -141.63 -124.75 REMARK 500 ARG A 435 62.62 -118.41 REMARK 500 ARG A 435 61.94 -118.01 REMARK 500 SER A 624 177.84 -50.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 719 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 720 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 721 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 722 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UER RELATED DB: PDB DBREF 3UCQ A 1 650 UNP Q1J0W0 Q1J0W0_DEIGD 1 650 SEQADV 3UCQ GLY A -4 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UCQ PRO A -3 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UCQ LEU A -2 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UCQ GLY A -1 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UCQ SER A 0 UNP Q1J0W0 EXPRESSION TAG SEQRES 1 A 655 GLY PRO LEU GLY SER MET LEU LYS ASP VAL LEU THR SER SEQRES 2 A 655 GLU LEU ALA ALA GLN VAL ARG ASP ALA PHE ASP ASP ASP SEQRES 3 A 655 ARG ASP ALA GLU THR PHE LEU LEU ARG LEU GLU ARG TYR SEQRES 4 A 655 GLY GLU ASP LEU TRP GLU SER LEU ARG ALA VAL TYR GLY SEQRES 5 A 655 ASP GLN VAL ARG ALA LEU PRO GLY ARG LEU LEU GLU VAL SEQRES 6 A 655 MET LEU HIS ALA TYR HIS ALA ARG PRO ALA GLU LEU ARG SEQRES 7 A 655 ARG LEU ASP GLU ALA ARG LEU LEU ARG PRO ASP TRP LEU SEQRES 8 A 655 GLN ARG PRO GLU MET VAL GLY TYR VAL ALA TYR THR ASP SEQRES 9 A 655 ARG PHE ALA GLY THR LEU LYS GLY VAL GLU GLU ARG LEU SEQRES 10 A 655 ASP TYR LEU GLU GLY LEU GLY VAL LYS TYR LEU HIS LEU SEQRES 11 A 655 MET PRO LEU LEU ARG PRO ARG GLU GLY GLU ASN ASP GLY SEQRES 12 A 655 GLY TYR ALA VAL GLN ASP TYR ARG ALA VAL ARG PRO ASP SEQRES 13 A 655 LEU GLY THR MET ASP ASP LEU SER ALA LEU ALA ARG ALA SEQRES 14 A 655 LEU ARG GLY ARG GLY ILE SER LEU VAL LEU ASP LEU VAL SEQRES 15 A 655 LEU ASN HIS VAL ALA ARG GLU HIS ALA TRP ALA GLN LYS SEQRES 16 A 655 ALA ARG ALA GLY ASP PRO LYS TYR ARG ALA TYR PHE HIS SEQRES 17 A 655 LEU PHE PRO ASP ARG ARG GLY PRO ASP ALA PHE GLU ALA SEQRES 18 A 655 THR LEU PRO GLU ILE PHE PRO ASP PHE ALA PRO GLY ASN SEQRES 19 A 655 PHE SER TRP ASP GLU GLU ILE GLY GLU GLY GLU GLY GLY SEQRES 20 A 655 TRP VAL TRP THR THR PHE ASN SER TYR GLN TRP ASP LEU SEQRES 21 A 655 ASN TRP ALA ASN PRO ASP VAL PHE LEU GLU PHE VAL ASP SEQRES 22 A 655 ILE ILE LEU TYR LEU ALA ASN ARG GLY VAL GLU VAL PHE SEQRES 23 A 655 ARG LEU ASP ALA ILE ALA PHE ILE TRP LYS ARG LEU GLY SEQRES 24 A 655 THR ASP CYS GLN ASN GLN PRO GLU VAL HIS HIS LEU THR SEQRES 25 A 655 ARG ALA LEU ARG ALA ALA ALA ARG ILE VAL ALA PRO ALA SEQRES 26 A 655 VAL ALA PHE LYS ALA GLU ALA ILE VAL ALA PRO ALA ASP SEQRES 27 A 655 LEU ILE HIS TYR LEU GLY THR ARG ALA HIS HIS GLY LYS SEQRES 28 A 655 VAL SER ASP MET ALA TYR HIS ASN SER LEU MET VAL GLN SEQRES 29 A 655 LEU TRP SER SER LEU ALA SER ARG ASN THR ARG LEU PHE SEQRES 30 A 655 GLU GLU ALA LEU ARG ALA PHE PRO PRO LYS PRO THR SER SEQRES 31 A 655 THR THR TRP GLY LEU TYR VAL ARG CYS HIS ASP ASP ILE SEQRES 32 A 655 GLY TRP ALA ILE SER ASP GLU ASP ALA ALA ARG ALA GLY SEQRES 33 A 655 LEU ASN GLY ALA ALA HIS ARG HIS PHE LEU SER ASP PHE SEQRES 34 A 655 TYR SER GLY GLN PHE PRO GLY SER PHE ALA ARG GLY LEU SEQRES 35 A 655 VAL PHE GLN TYR ASN PRO VAL ASN GLY ASP ARG ARG ILE SEQRES 36 A 655 SER GLY SER ALA ALA SER LEU ALA GLY LEU GLU ALA ALA SEQRES 37 A 655 LEU GLU THR GLY ASP PRO GLY ARG ILE GLU ASP ALA VAL SEQRES 38 A 655 ARG ARG LEU LEU LEU LEU HIS THR VAL ILE LEU GLY PHE SEQRES 39 A 655 GLY GLY VAL PRO LEU LEU TYR MET GLY ASP GLU LEU ALA SEQRES 40 A 655 LEU LEU ASN ASP TYR ALA PHE GLU ASP VAL PRO GLU HIS SEQRES 41 A 655 ALA PRO ASP ASN ARG TRP VAL HIS ARG PRO GLN MET ASP SEQRES 42 A 655 TRP ALA LEU ALA GLU ARG VAL ARG GLN GLU PRO SER SER SEQRES 43 A 655 PRO ALA GLY ARG VAL ASN THR GLY LEU ARG HIS LEU LEU SEQRES 44 A 655 ARG VAL ARG ARG ASP THR PRO GLN LEU HIS ALA SER ILE SEQRES 45 A 655 GLU SER GLN VAL LEU PRO SER PRO ASP SER ARG ALA LEU SEQRES 46 A 655 LEU LEU ARG ARG ASP HIS PRO LEU GLY GLY MET VAL GLN SEQRES 47 A 655 VAL TYR ASN PHE SER GLU GLU THR VAL MET LEU PRO SER SEQRES 48 A 655 HIS VAL LEU ARG ASP VAL LEU GLY ASP HIS VAL GLN ASP SEQRES 49 A 655 ARG LEU SER GLY SER ALA PHE ARG LEU ASP ARG PRO THR SEQRES 50 A 655 VAL ARG LEU GLU GLY TYR ARG ALA LEU TRP LEU THR ALA SEQRES 51 A 655 GLY GLU ALA PRO ALA HET TRS A 700 8 HET GOL A 710 6 HET GOL A 711 6 HET GOL A 712 6 HET GOL A 713 6 HET GOL A 714 6 HET GOL A 715 6 HET GOL A 716 6 HET GOL A 717 6 HET GOL A 718 6 HET GOL A 719 6 HET GOL A 720 6 HET GOL A 721 6 HET GOL A 722 6 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 GOL 13(C3 H8 O3) FORMUL 16 HOH *602(H2 O) HELIX 1 1 GLY A -4 PHE A 18 1 23 HELIX 2 2 ASP A 20 GLY A 47 1 28 HELIX 3 3 ASP A 48 ARG A 51 5 4 HELIX 4 4 ALA A 52 ARG A 68 1 17 HELIX 5 5 PRO A 69 ARG A 82 1 14 HELIX 6 6 ASP A 84 ARG A 88 5 5 HELIX 7 7 TYR A 97 GLY A 103 1 7 HELIX 8 8 THR A 104 GLU A 110 1 7 HELIX 9 9 ARG A 111 LEU A 118 1 8 HELIX 10 10 ASN A 136 TYR A 140 5 5 HELIX 11 11 PRO A 150 GLY A 153 5 4 HELIX 12 12 THR A 154 ARG A 168 1 15 HELIX 13 13 HIS A 185 ALA A 193 1 9 HELIX 14 14 ASP A 195 ALA A 200 1 6 HELIX 15 15 ARG A 208 ALA A 216 1 9 HELIX 16 16 ASN A 259 ASN A 275 1 17 HELIX 17 17 ALA A 285 ILE A 289 5 5 HELIX 18 18 GLN A 300 ALA A 318 1 19 HELIX 19 19 ALA A 330 ILE A 335 1 6 HELIX 20 20 HIS A 336 LEU A 338 5 3 HELIX 21 21 HIS A 353 ARG A 367 1 15 HELIX 22 22 THR A 369 ALA A 378 1 10 HELIX 23 23 SER A 403 ALA A 410 1 8 HELIX 24 24 ASN A 413 SER A 426 1 14 HELIX 25 25 SER A 453 ALA A 458 1 6 HELIX 26 26 GLY A 459 GLY A 467 1 9 HELIX 27 27 ASP A 468 PHE A 489 1 22 HELIX 28 28 GLY A 498 ALA A 502 5 5 HELIX 29 29 ASP A 506 VAL A 512 5 7 HELIX 30 30 ASP A 518 ARG A 524 5 7 HELIX 31 31 ASP A 528 GLU A 538 1 11 HELIX 32 32 SER A 541 ASP A 559 1 19 HELIX 33 33 THR A 560 HIS A 564 5 5 HELIX 34 34 SER A 606 GLY A 614 1 9 SHEET 1 A 9 GLY A 93 ALA A 96 0 SHEET 2 A 9 TYR A 122 LEU A 125 1 O HIS A 124 N TYR A 94 SHEET 3 A 9 SER A 171 LEU A 176 1 O VAL A 173 N LEU A 123 SHEET 4 A 9 VAL A 280 LEU A 283 1 O ARG A 282 N LEU A 176 SHEET 5 A 9 ALA A 322 ALA A 325 1 O LYS A 324 N LEU A 283 SHEET 6 A 9 MET A 350 TYR A 352 1 O MET A 350 N ALA A 325 SHEET 7 A 9 THR A 387 LEU A 390 1 O GLY A 389 N ALA A 351 SHEET 8 A 9 VAL A 492 TYR A 496 1 O LEU A 494 N LEU A 390 SHEET 9 A 9 GLY A 93 ALA A 96 1 N GLY A 93 O PRO A 493 SHEET 1 B 2 LEU A 129 PRO A 131 0 SHEET 2 B 2 VAL A 142 VAL A 148 -1 O ALA A 147 N ARG A 130 SHEET 1 C 2 HIS A 180 ALA A 182 0 SHEET 2 C 2 GLN A 252 ASP A 254 -1 O TRP A 253 N VAL A 181 SHEET 1 D 3 LEU A 204 PHE A 205 0 SHEET 2 D 3 GLY A 242 TRP A 245 -1 O TRP A 243 N PHE A 205 SHEET 3 D 3 PHE A 230 ASP A 233 -1 N ASP A 233 O GLY A 242 SHEET 1 E 2 LEU A 437 PHE A 439 0 SHEET 2 E 2 ARG A 449 SER A 451 -1 O ARG A 449 N PHE A 439 SHEET 1 F 6 GLN A 570 VAL A 571 0 SHEET 2 F 6 ALA A 579 ARG A 584 -1 O ARG A 583 N GLN A 570 SHEET 3 F 6 MET A 591 ASN A 596 -1 O GLN A 593 N LEU A 582 SHEET 4 F 6 ALA A 640 ALA A 645 -1 O LEU A 641 N VAL A 594 SHEET 5 F 6 HIS A 616 ASP A 619 -1 N GLN A 618 O THR A 644 SHEET 6 F 6 ALA A 625 ARG A 627 -1 O PHE A 626 N VAL A 617 SHEET 1 G 2 VAL A 602 PRO A 605 0 SHEET 2 G 2 THR A 632 LEU A 635 -1 O LEU A 635 N VAL A 602 SITE 1 AC1 12 ILE A 221 PHE A 222 PHE A 248 ASP A 396 SITE 2 AC1 12 ASP A 397 ARG A 449 ARG A 520 GOL A 720 SITE 3 AC1 12 HOH A1017 HOH A1128 HOH A1174 HOH A1356 SITE 1 AC2 9 TYR A 97 ASP A 99 ARG A 100 GLY A 138 SITE 2 AC2 9 ARG A 149 HOH A 938 HOH A1208 HOH A1263 SITE 3 AC2 9 HOH A1334 SITE 1 AC3 8 GLU A 135 PHE A 225 ASN A 249 TYR A 251 SITE 2 AC3 8 PRO A 517 ASP A 518 GOL A 718 HOH A 853 SITE 1 AC4 9 ASP A 224 PHE A 439 GLN A 440 PRO A 517 SITE 2 AC4 9 ASP A 518 ASN A 519 GOL A 714 GOL A 718 SITE 3 AC4 9 HOH A1143 SITE 1 AC5 10 ALA A 186 LYS A 190 ARG A 370 ARG A 409 SITE 2 AC5 10 ALA A 410 GLY A 411 HOH A 962 HOH A1166 SITE 3 AC5 10 HOH A1256 HOH A1349 SITE 1 AC6 7 ASP A 224 VAL A 438 GLN A 440 TYR A 441 SITE 2 AC6 7 ASN A 519 GOL A 712 HOH A1344 SITE 1 AC7 8 TYR A 114 TRP A 529 ARG A 536 GOL A 722 SITE 2 AC7 8 HOH A 914 HOH A1055 HOH A1186 HOH A1191 SITE 1 AC8 7 ARG A 183 TRP A 232 ASP A 233 SER A 250 SITE 2 AC8 7 TRP A 253 HOH A1064 HOH A1326 SITE 1 AC9 7 PHE A 205 ARG A 536 GOL A 719 HOH A1032 SITE 2 AC9 7 HOH A1099 HOH A1149 HOH A1300 SITE 1 BC1 5 ASP A 224 PHE A 225 PRO A 517 GOL A 711 SITE 2 BC1 5 GOL A 712 SITE 1 BC2 8 PHE A 214 LYS A 291 ARG A 292 LEU A 293 SITE 2 BC2 8 ARG A 536 GLN A 537 GOL A 717 HOH A1099 SITE 1 BC3 9 ASP A 137 TYR A 140 HIS A 180 PHE A 222 SITE 2 BC3 9 ASP A 284 ARG A 520 TRS A 700 HOH A 844 SITE 3 BC3 9 HOH A1356 SITE 1 BC4 7 ARG A 282 GLU A 326 TYR A 352 TYR A 391 SITE 2 BC4 7 CYS A 394 HIS A 395 HOH A 907 SITE 1 BC5 7 ARG A 536 ASN A 547 ARG A 551 GOL A 715 SITE 2 BC5 7 HOH A 914 HOH A1045 HOH A1300 CRYST1 105.316 110.203 115.519 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009495 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008657 0.00000