HEADER MEMBRANE PROTEIN 27-OCT-11 3UD0 TITLE ATP SYNTHASE C10 RING IN PROTON-UNLOCKED CONFORMATION AT PH 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE SUBUNIT C, MITOCHONDRIAL; COMPND 3 CHAIN: K, L, M, N, O; COMPND 4 SYNONYM: LIPID-BINDING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS F1FO ATP SYNTHASE, PROTON PORE, C10 RING, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.SYMERSKY,D.MUELLER REVDAT 4 13-SEP-23 3UD0 1 LINK REVDAT 3 13-JUN-12 3UD0 1 JRNL REVDAT 2 18-APR-12 3UD0 1 JRNL REVDAT 1 08-FEB-12 3UD0 0 JRNL AUTH J.SYMERSKY,V.PAGADALA,D.OSOWSKI,A.KRAH,T.MEIER, JRNL AUTH 2 J.D.FARALDO-GOMEZ,D.M.MUELLER JRNL TITL STRUCTURE OF THE C(10) RING OF THE YEAST MITOCHONDRIAL ATP JRNL TITL 2 SYNTHASE IN THE OPEN CONFORMATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 485 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22504883 JRNL DOI 10.1038/NSMB.2284 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 23261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1246 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1414 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.1950 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.92000 REMARK 3 B33 (A**2) : -1.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.270 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2799 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3818 ; 1.035 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 3.779 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;35.905 ;23.231 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;14.318 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.043 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1960 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 1 K 41 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9887 11.0341 32.8878 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.0277 REMARK 3 T33: 0.0590 T12: -0.0158 REMARK 3 T13: -0.0055 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.3864 L22: 0.3311 REMARK 3 L33: 8.6151 L12: -0.0143 REMARK 3 L13: -0.5153 L23: -0.4672 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: -0.1023 S13: 0.0445 REMARK 3 S21: 0.0998 S22: 0.0006 S23: -0.0166 REMARK 3 S31: -0.0723 S32: 0.1245 S33: -0.0526 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 42 K 74 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1033 19.0878 27.6511 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.0914 REMARK 3 T33: 0.1088 T12: -0.0358 REMARK 3 T13: -0.0046 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.1255 L22: 0.2180 REMARK 3 L33: 12.3425 L12: 0.0057 REMARK 3 L13: -0.4443 L23: -0.8553 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.0829 S13: 0.0350 REMARK 3 S21: 0.1443 S22: -0.0914 S23: -0.0073 REMARK 3 S31: -0.4189 S32: 0.4788 S33: 0.1262 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 41 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0365 13.3191 32.0025 REMARK 3 T TENSOR REMARK 3 T11: 0.0545 T22: 0.0326 REMARK 3 T33: 0.0454 T12: -0.0076 REMARK 3 T13: 0.0090 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4142 L22: 0.4602 REMARK 3 L33: 12.1474 L12: 0.0540 REMARK 3 L13: -0.4407 L23: -1.2808 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: -0.0904 S13: 0.0809 REMARK 3 S21: 0.1073 S22: 0.0612 S23: 0.0025 REMARK 3 S31: -0.1226 S32: -0.0168 S33: -0.1688 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 42 L 74 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5249 20.2251 28.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.1161 T22: 0.0888 REMARK 3 T33: 0.1007 T12: -0.0145 REMARK 3 T13: -0.0039 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.0981 L22: 0.1129 REMARK 3 L33: 10.8151 L12: -0.0693 REMARK 3 L13: 0.0012 L23: -0.4592 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: -0.0569 S13: 0.0365 REMARK 3 S21: 0.1119 S22: -0.0139 S23: -0.0236 REMARK 3 S31: -0.5612 S32: 0.0258 S33: 0.0790 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 1 M 41 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2523 10.6629 32.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.0339 REMARK 3 T33: 0.0391 T12: -0.0127 REMARK 3 T13: 0.0171 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.4009 L22: 0.4834 REMARK 3 L33: 11.8546 L12: -0.0522 REMARK 3 L13: 0.4423 L23: -1.4589 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.1126 S13: 0.0174 REMARK 3 S21: 0.1268 S22: 0.0253 S23: 0.0529 REMARK 3 S31: -0.1803 S32: -0.1557 S33: -0.0830 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : M 42 M 75 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4906 13.7284 28.6304 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.1107 REMARK 3 T33: 0.1202 T12: 0.0256 REMARK 3 T13: 0.0280 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.2601 L22: 0.2565 REMARK 3 L33: 13.6536 L12: 0.1044 REMARK 3 L13: 0.5245 L23: -0.7682 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.1396 S13: 0.0473 REMARK 3 S21: 0.1238 S22: -0.0376 S23: 0.0700 REMARK 3 S31: -0.5141 S32: -0.3943 S33: 0.0373 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 1 N 41 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4290 4.0255 32.2929 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.0372 REMARK 3 T33: 0.0513 T12: -0.0084 REMARK 3 T13: 0.0206 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.3666 L22: 0.4370 REMARK 3 L33: 13.3476 L12: -0.1432 REMARK 3 L13: 1.2584 L23: -0.9942 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.1044 S13: -0.0283 REMARK 3 S21: 0.1055 S22: 0.0569 S23: 0.0640 REMARK 3 S31: -0.0691 S32: -0.3140 S33: -0.0935 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : N 42 N 74 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4834 1.9352 28.3023 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.1466 REMARK 3 T33: 0.1287 T12: 0.0068 REMARK 3 T13: 0.0234 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.2004 L22: 0.2414 REMARK 3 L33: 12.1565 L12: 0.0866 REMARK 3 L13: 0.8248 L23: -0.3078 REMARK 3 S TENSOR REMARK 3 S11: 0.0078 S12: -0.1273 S13: 0.0478 REMARK 3 S21: 0.1132 S22: -0.0109 S23: 0.0427 REMARK 3 S31: -0.2637 S32: -0.5610 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 1 O 41 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4260 -4.2586 32.1594 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0605 REMARK 3 T33: 0.0524 T12: -0.0104 REMARK 3 T13: 0.0097 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.4843 L22: 0.3373 REMARK 3 L33: 16.6432 L12: -0.0878 REMARK 3 L13: 1.4413 L23: 0.0850 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: -0.1241 S13: -0.0590 REMARK 3 S21: 0.0779 S22: 0.1108 S23: 0.0520 REMARK 3 S31: 0.1246 S32: -0.1665 S33: -0.2318 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : O 42 O 74 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1992 -10.6591 28.2197 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: 0.1027 REMARK 3 T33: 0.1184 T12: -0.0419 REMARK 3 T13: 0.0246 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.4185 L22: 0.2200 REMARK 3 L33: 11.1695 L12: 0.0028 REMARK 3 L13: 1.0739 L23: 0.5573 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.1362 S13: -0.0510 REMARK 3 S21: 0.1134 S22: -0.0492 S23: 0.0526 REMARK 3 S31: 0.0449 S32: -0.5665 S33: 0.0451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3UD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : 0.21700 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.6.0117 REMARK 200 STARTING MODEL: PDB ENTRY 3U2F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 68% MPD, 8% PROPOLYENE GLYCOL, 0.3M REMARK 280 NACL, 0.1M MALONATE PH 7.0, 2MM MGSO4, 50 MM MES PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K. SOAKING: 68% MPD, 8% REMARK 280 PROPYLENE GLYCOL, 0.4M NACL, 2MM MGCL2, 50MM MES PH 5.5, FOR 12 REMARK 280 HOURS AT 294K. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.69600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 122.69600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 122.69600 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.69600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -407.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L, M, N, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.15900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 79 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY K 75 REMARK 465 VAL K 76 REMARK 465 GLY L 75 REMARK 465 VAL L 76 REMARK 465 VAL M 76 REMARK 465 GLY N 75 REMARK 465 VAL N 76 REMARK 465 GLY O 75 REMARK 465 VAL O 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE K 74 CG CD1 CD2 CE1 CE2 CZ REMARK 470 FME L 1 CG SD CE REMARK 470 GLN L 2 CG CD OE1 NE2 REMARK 470 LYS L 8 NZ REMARK 470 FME M 1 SD CE REMARK 470 GLN M 2 CG CD OE1 NE2 REMARK 470 LYS M 8 CE NZ REMARK 470 FME N 1 CG SD CE REMARK 470 GLN N 2 OE1 NE2 REMARK 470 LYS N 8 NZ REMARK 470 FME O 1 SD CE REMARK 470 GLN O 2 CG CD OE1 NE2 REMARK 470 LYS O 8 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH M 85 O HOH O 80 6555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 40 78.16 -150.66 REMARK 500 ASN M 40 79.67 -150.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XOK RELATED DB: PDB REMARK 900 RELATED ID: 2XQU RELATED DB: PDB REMARK 900 RELATED ID: 2X2V RELATED DB: PDB REMARK 900 RELATED ID: 3U2F RELATED DB: PDB REMARK 900 RELATED ID: 3U2Y RELATED DB: PDB REMARK 900 RELATED ID: 3U32 RELATED DB: PDB DBREF 3UD0 K 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3UD0 L 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3UD0 M 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3UD0 N 1 76 UNP P61829 ATP9_YEAST 1 76 DBREF 3UD0 O 1 76 UNP P61829 ATP9_YEAST 1 76 SEQRES 1 K 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 K 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 K 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 K 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 K 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 K 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 L 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 L 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 L 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 L 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 L 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 L 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 M 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 M 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 M 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 M 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 M 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 M 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 N 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 N 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 N 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 N 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 N 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 N 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL SEQRES 1 O 76 FME GLN LEU VAL LEU ALA ALA LYS TYR ILE GLY ALA GLY SEQRES 2 O 76 ILE SER THR ILE GLY LEU LEU GLY ALA GLY ILE GLY ILE SEQRES 3 O 76 ALA ILE VAL PHE ALA ALA LEU ILE ASN GLY VAL SER ARG SEQRES 4 O 76 ASN PRO SER ILE LYS ASP THR VAL PHE PRO MET ALA ILE SEQRES 5 O 76 LEU GLY PHE ALA LEU SER GLU ALA THR GLY LEU PHE CYS SEQRES 6 O 76 LEU MET VAL SER PHE LEU LEU LEU PHE GLY VAL MODRES 3UD0 FME K 1 MET N-FORMYLMETHIONINE MODRES 3UD0 FME L 1 MET N-FORMYLMETHIONINE MODRES 3UD0 FME M 1 MET N-FORMYLMETHIONINE MODRES 3UD0 FME N 1 MET N-FORMYLMETHIONINE MODRES 3UD0 FME O 1 MET N-FORMYLMETHIONINE HET FME K 1 10 HET FME L 1 7 HET FME M 1 8 HET FME N 1 7 HET FME O 1 8 HETNAM FME N-FORMYLMETHIONINE FORMUL 1 FME 5(C6 H11 N O3 S) FORMUL 6 HOH *85(H2 O) HELIX 1 1 FME K 1 SER K 15 1 15 HELIX 2 2 GLY K 18 ASN K 40 1 23 HELIX 3 3 ILE K 43 PHE K 74 1 32 HELIX 4 4 GLN L 2 SER L 15 1 14 HELIX 5 5 GLY L 18 ASN L 40 1 23 HELIX 6 6 ILE L 43 PHE L 74 1 32 HELIX 7 7 GLN M 2 SER M 15 1 14 HELIX 8 8 GLY M 18 ASN M 40 1 23 HELIX 9 9 ILE M 43 GLY M 75 1 33 HELIX 10 10 GLN N 2 SER N 15 1 14 HELIX 11 11 GLY N 18 ASN N 40 1 23 HELIX 12 12 ILE N 43 PHE N 74 1 32 HELIX 13 13 GLN O 2 SER O 15 1 14 HELIX 14 14 GLY O 18 ASN O 40 1 23 HELIX 15 15 ILE O 43 PHE O 74 1 32 LINK C FME K 1 N GLN K 2 1555 1555 1.43 LINK C FME L 1 N GLN L 2 1555 1555 1.43 LINK C FME M 1 N GLN M 2 1555 1555 1.42 LINK C FME N 1 N GLN N 2 1555 1555 1.43 LINK C FME O 1 N GLN O 2 1555 1555 1.42 CRYST1 54.159 54.159 245.392 90.00 90.00 90.00 P 42 2 2 40 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004075 0.00000 HETATM 1 N FME K 1 32.970 15.208 64.162 1.00 36.70 N ANISOU 1 N FME K 1 5921 4861 3162 -356 62 -492 N HETATM 2 CN FME K 1 31.753 14.694 63.948 1.00 36.70 C ANISOU 2 CN FME K 1 5809 4911 3224 -159 111 -433 C HETATM 3 O1 FME K 1 31.481 14.056 62.937 1.00 34.85 O ANISOU 3 O1 FME K 1 5414 4719 3105 -125 105 -384 O HETATM 4 CA FME K 1 33.809 15.721 63.092 1.00 36.51 C ANISOU 4 CA FME K 1 5953 4769 3149 -503 35 -523 C HETATM 5 CB FME K 1 34.909 16.615 63.653 1.00 38.88 C ANISOU 5 CB FME K 1 6453 5042 3276 -768 3 -600 C HETATM 6 CG FME K 1 34.393 18.019 63.940 1.00 41.50 C ANISOU 6 CG FME K 1 7219 5121 3427 -744 84 -669 C HETATM 7 SD FME K 1 35.734 19.040 64.468 1.00 44.86 S ANISOU 7 SD FME K 1 7934 5508 3603 -1169 43 -763 S HETATM 8 CE FME K 1 36.199 19.744 62.923 1.00 44.21 C ANISOU 8 CE FME K 1 8003 5292 3499 -1332 51 -785 C HETATM 9 C FME K 1 34.459 14.611 62.323 1.00 34.94 C ANISOU 9 C FME K 1 5472 4715 3089 -549 -32 -468 C HETATM 10 O FME K 1 34.592 14.764 61.091 1.00 33.04 O ANISOU 10 O FME K 1 5212 4425 2914 -563 -31 -464 O