data_3UD5
#
_entry.id 3UD5
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3UD5 pdb_00003ud5 10.2210/pdb3ud5/pdb
RCSB RCSB068604 ? ?
WWPDB D_1000068604 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1EX8 'Structure of E. coli HPPK in complex with bisubstrate analogue inhibitor A4P' unspecified
PDB 3UDE 'CRYSTAL STRUCTURE OF E. COLI HPPK IN COMPLEX WITH BISUBSTRATE ANALOGUE INHIBITOR J1B' unspecified
PDB 3UDV 'CRYSTAL STRUCTURE OF E. COLI HPPK IN COMPLEX WITH BISUBSTRATE ANALOGUE INHIBITOR J1C' unspecified
#
_pdbx_database_status.entry_id 3UD5
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2011-10-27
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Shaw, G.' 1 ?
'Shi, G.' 2 ?
'Ji, X.' 3 0000-0001-6942-1514
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
'Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.'
Bioorg.Med.Chem. 20 47 57 2012 BMECEP UK 0968-0896 1200 ? 22169600 10.1016/j.bmc.2011.11.032
1
;Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: synthesis and biochemical and crystallographic studies.
;
J.Med.Chem. 44 1364 1371 2001 JMCMAR US 0022-2623 0151 ? 11311059 ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shi, G.' 1 ?
primary 'Shaw, G.' 2 ?
primary 'Liang, Y.H.' 3 ?
primary 'Subburaman, P.' 4 ?
primary 'Li, Y.' 5 ?
primary 'Wu, Y.' 6 ?
primary 'Yan, H.' 7 ?
primary 'Ji, X.' 8 0000-0001-6942-1514
1 'Shi, G.' 9 ?
1 'Blaszczyk, J.' 10 ?
1 'Ji, X.' 11 ?
1 'Yan, H.' 12 ?
#
_cell.length_a 79.92
_cell.length_b 52.84
_cell.length_c 36.76
_cell.angle_alpha 90.00
_cell.angle_beta 102.57
_cell.angle_gamma 90.00
_cell.entry_id 3UD5
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'C 1 2 1'
_symmetry.entry_id 3UD5
_symmetry.Int_Tables_number 5
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man '2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase'
17966.535 1 2.7.6.3 ? ? ?
2 non-polymer syn "5'-S-[1-(2-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"
584.654 1 ? ? ? ?
3 non-polymer syn 1,2-ETHANEDIOL
62.068 2 ? ? ? ?
4 water nat water
18.015 106 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, PPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_seq_one_letter_code_can
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 VAL n
1 3 ALA n
1 4 TYR n
1 5 ILE n
1 6 ALA n
1 7 ILE n
1 8 GLY n
1 9 SER n
1 10 ASN n
1 11 LEU n
1 12 ALA n
1 13 SER n
1 14 PRO n
1 15 LEU n
1 16 GLU n
1 17 GLN n
1 18 VAL n
1 19 ASN n
1 20 ALA n
1 21 ALA n
1 22 LEU n
1 23 LYS n
1 24 ALA n
1 25 LEU n
1 26 GLY n
1 27 ASP n
1 28 ILE n
1 29 PRO n
1 30 GLU n
1 31 SER n
1 32 HIS n
1 33 ILE n
1 34 LEU n
1 35 THR n
1 36 VAL n
1 37 SER n
1 38 SER n
1 39 PHE n
1 40 TYR n
1 41 ARG n
1 42 THR n
1 43 PRO n
1 44 PRO n
1 45 LEU n
1 46 GLY n
1 47 PRO n
1 48 GLN n
1 49 ASP n
1 50 GLN n
1 51 PRO n
1 52 ASP n
1 53 TYR n
1 54 LEU n
1 55 ASN n
1 56 ALA n
1 57 ALA n
1 58 VAL n
1 59 ALA n
1 60 LEU n
1 61 GLU n
1 62 THR n
1 63 SER n
1 64 LEU n
1 65 ALA n
1 66 PRO n
1 67 GLU n
1 68 GLU n
1 69 LEU n
1 70 LEU n
1 71 ASN n
1 72 HIS n
1 73 THR n
1 74 GLN n
1 75 ARG n
1 76 ILE n
1 77 GLU n
1 78 LEU n
1 79 GLN n
1 80 GLN n
1 81 GLY n
1 82 ARG n
1 83 VAL n
1 84 ARG n
1 85 LYS n
1 86 ALA n
1 87 GLU n
1 88 ARG n
1 89 TRP n
1 90 GLY n
1 91 PRO n
1 92 ARG n
1 93 THR n
1 94 LEU n
1 95 ASP n
1 96 LEU n
1 97 ASP n
1 98 ILE n
1 99 MET n
1 100 LEU n
1 101 PHE n
1 102 GLY n
1 103 ASN n
1 104 GLU n
1 105 VAL n
1 106 ILE n
1 107 ASN n
1 108 THR n
1 109 GLU n
1 110 ARG n
1 111 LEU n
1 112 THR n
1 113 VAL n
1 114 PRO n
1 115 HIS n
1 116 TYR n
1 117 ASP n
1 118 MET n
1 119 LYS n
1 120 ASN n
1 121 ARG n
1 122 GLY n
1 123 PHE n
1 124 MET n
1 125 LEU n
1 126 TRP n
1 127 PRO n
1 128 LEU n
1 129 PHE n
1 130 GLU n
1 131 ILE n
1 132 ALA n
1 133 PRO n
1 134 GLU n
1 135 LEU n
1 136 VAL n
1 137 PHE n
1 138 PRO n
1 139 ASP n
1 140 GLY n
1 141 GLU n
1 142 MET n
1 143 LEU n
1 144 ARG n
1 145 GLN n
1 146 ILE n
1 147 LEU n
1 148 HIS n
1 149 THR n
1 150 ARG n
1 151 ALA n
1 152 PHE n
1 153 ASP n
1 154 LYS n
1 155 LEU n
1 156 ASN n
1 157 LYS n
1 158 TRP n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'b0142, foIK, folK, JW0138'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain K12
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21(DE3)'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET17b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code HPPK_ECOLI
_struct_ref.pdbx_db_accession P26281
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_struct_ref.pdbx_align_begin 2
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3UD5
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 158
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P26281
_struct_ref_seq.db_align_beg 2
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 159
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 158
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
J1A non-polymer .
"5'-S-[1-(2-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" ?
'C24 H32 N12 O4 S' 584.654
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.crystals_number 1
_exptl.entry_id 3UD5
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 2.11
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 41.66
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pH 6.5
_exptl_crystal_grow.temp 292
_exptl_crystal_grow.pdbx_details 'PEG 3350, Bis-Tris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 300 mm CCD'
_diffrn_detector.pdbx_collection_date 2009-11-05
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 22-ID'
_diffrn_source.pdbx_wavelength_list 1.0
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 22-ID
#
_reflns.entry_id 3UD5
_reflns.observed_criterion_sigma_F -6
_reflns.observed_criterion_sigma_I -3
_reflns.d_resolution_high 1.9
_reflns.d_resolution_low 30.0
_reflns.number_all 10236
_reflns.number_obs 10236
_reflns.percent_possible_obs 87.0
_reflns.pdbx_Rmerge_I_obs 0.089
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 16.2
_reflns.B_iso_Wilson_estimate 22.9
_reflns.pdbx_redundancy 6.5
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.percent_possible_obs
_reflns_shell.percent_possible_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_redundancy
_reflns_shell.number_unique_all
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_unique_obs
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.90 2.02 ? 63.3 0.289 ? ? ? 1230 ? ? ? ? 1 1
2.02 2.17 ? 74.8 0.214 ? ? ? 1465 ? ? ? ? 2 1
2.17 2.39 ? 88.5 0.166 ? ? ? 1725 ? ? ? ? 3 1
2.39 2.74 ? 98.5 0.130 ? ? ? 1914 ? ? ? ? 4 1
2.74 3.45 ? 99.5 0.088 ? ? ? 1958 ? ? ? ? 5 1
3.45 30.00 ? 97.1 0.067 ? ? ? 1944 ? ? ? ? 6 1
#
_refine.entry_id 3UD5
_refine.ls_d_res_high 2.0000
_refine.ls_d_res_low 29.8410
_refine.pdbx_ls_sigma_F 1.380
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 90.7100
_refine.ls_number_reflns_obs 9252
_refine.ls_number_reflns_all 9252
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details Random
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1640
_refine.ls_R_factor_R_work 0.1599
_refine.ls_wR_factor_R_work ?
_refine.ls_R_factor_R_free 0.2046
_refine.ls_wR_factor_R_free ?
_refine.ls_percent_reflns_R_free 8.9100
_refine.ls_number_reflns_R_free 824
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 31.0252
_refine.solvent_model_param_bsol 44.4260
_refine.solvent_model_param_ksol 0.3440
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] 26.0604
_refine.aniso_B[2][2] -7.7768
_refine.aniso_B[3][3] -3.2667
_refine.aniso_B[1][2] -0.0000
_refine.aniso_B[1][3] 9.1949
_refine.aniso_B[2][3] -0.0000
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.5400
_refine.overall_SU_B ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model 'PDB entry 1EQM'
_refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS'
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set ?
_refine.B_iso_max 99.630
_refine.B_iso_min 11.800
_refine.pdbx_overall_phase_error 23.6700
_refine.occupancy_max 1.000
_refine.occupancy_min 0.290
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1267
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 49
_refine_hist.number_atoms_solvent 106
_refine_hist.number_atoms_total 1422
_refine_hist.d_res_high 2.0000
_refine_hist.d_res_low 29.8410
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 1415 0.012 ? ? ? 'X-RAY DIFFRACTION'
f_angle_d 1936 1.302 ? ? ? 'X-RAY DIFFRACTION'
f_chiral_restr 211 0.076 ? ? ? 'X-RAY DIFFRACTION'
f_plane_restr 251 0.008 ? ? ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 537 15.858 ? ? ? 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.pdbx_refine_id
2.0000 2.1254 6 72.0000 1096 . 0.1643 0.2617 . 107 . 1203 1203 . 'X-RAY DIFFRACTION'
2.1254 2.2894 6 82.0000 1288 . 0.1659 0.2265 . 126 . 1414 1414 . 'X-RAY DIFFRACTION'
2.2894 2.5197 6 94.0000 1435 . 0.1606 0.2422 . 140 . 1575 1575 . 'X-RAY DIFFRACTION'
2.5197 2.8841 6 100.0000 1539 . 0.1488 0.2255 . 151 . 1690 1690 . 'X-RAY DIFFRACTION'
2.8841 3.6326 6 99.0000 1536 . 0.1472 0.1912 . 150 . 1686 1686 . 'X-RAY DIFFRACTION'
3.6326 29.8441 6 97.0000 1534 . 0.1694 0.1791 . 150 . 1684 1684 . 'X-RAY DIFFRACTION'
#
_struct.entry_id 3UD5
_struct.title 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3UD5
_struct_keywords.text
'Alpha Beta, Kinase, ATP Binding, Pyrophosphoryl Transfer, TRANSFERASE-TRANSFERASE INHIBITOR complex'
_struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 3 ?
E N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PRO A 14 ? ASP A 27 ? PRO A 14 ASP A 27 1 ? 14
HELX_P HELX_P2 2 ALA A 65 ? GLY A 81 ? ALA A 65 GLY A 81 1 ? 17
HELX_P HELX_P3 3 ASP A 117 ? ASN A 120 ? ASP A 117 ASN A 120 5 ? 4
HELX_P HELX_P4 4 ARG A 121 ? ALA A 132 ? ARG A 121 ALA A 132 1 ? 12
HELX_P HELX_P5 5 MET A 142 ? ALA A 151 ? MET A 142 ALA A 151 1 ? 10
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id VAL
_struct_mon_prot_cis.label_seq_id 113
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id VAL
_struct_mon_prot_cis.auth_seq_id 113
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 114
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 114
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle -3.59
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 4 ?
B ? 4 ?
C ? 2 ?
D ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
C 1 2 ? anti-parallel
D 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
A 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
A 3 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9
A 4 LEU A 94 ? PHE A 101 ? LEU A 94 PHE A 101
B 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
B 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
B 3 TYR A 40 ? THR A 42 ? TYR A 40 THR A 42
B 4 ASN A 156 ? LYS A 157 ? ASN A 156 LYS A 157
C 1 ARG A 82 ? LYS A 85 ? ARG A 82 LYS A 85
C 2 ARG A 88 ? ARG A 92 ? ARG A 88 ARG A 92
D 1 ILE A 106 ? ASN A 107 ? ILE A 106 ASN A 107
D 2 THR A 112 ? VAL A 113 ? THR A 112 VAL A 113
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
A 2 3 O LEU A 60 ? O LEU A 60 N ALA A 3 ? N ALA A 3
A 3 4 N ALA A 6 ? N ALA A 6 O ASP A 97 ? O ASP A 97
B 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
B 2 3 O TYR A 53 ? O TYR A 53 N THR A 42 ? N THR A 42
B 3 4 N ARG A 41 ? N ARG A 41 O ASN A 156 ? O ASN A 156
C 1 2 N LYS A 85 ? N LYS A 85 O ARG A 88 ? O ARG A 88
D 1 2 N ILE A 106 ? N ILE A 106 O VAL A 113 ? O VAL A 113
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A J1A 171 ? 18 'BINDING SITE FOR RESIDUE J1A A 171'
AC2 Software A EDO 191 ? 3 'BINDING SITE FOR RESIDUE EDO A 191'
AC3 Software A EDO 192 ? 8 'BINDING SITE FOR RESIDUE EDO A 192'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 18 THR A 42 ? THR A 42 . ? 1_555 ?
2 AC1 18 PRO A 43 ? PRO A 43 . ? 1_555 ?
3 AC1 18 LEU A 45 ? LEU A 45 . ? 1_555 ?
4 AC1 18 TYR A 53 ? TYR A 53 . ? 1_555 ?
5 AC1 18 ASN A 55 ? ASN A 55 . ? 1_555 ?
6 AC1 18 GLN A 74 ? GLN A 74 . ? 1_555 ?
7 AC1 18 ASP A 95 ? ASP A 95 . ? 1_555 ?
8 AC1 18 ASP A 97 ? ASP A 97 . ? 1_555 ?
9 AC1 18 ILE A 98 ? ILE A 98 . ? 1_555 ?
10 AC1 18 ARG A 110 ? ARG A 110 . ? 1_555 ?
11 AC1 18 LEU A 111 ? LEU A 111 . ? 1_555 ?
12 AC1 18 THR A 112 ? THR A 112 . ? 1_555 ?
13 AC1 18 PHE A 123 ? PHE A 123 . ? 1_555 ?
14 AC1 18 HIS A 148 ? HIS A 148 . ? 1_554 ?
15 AC1 18 EDO D . ? EDO A 192 . ? 1_555 ?
16 AC1 18 HOH E . ? HOH A 221 . ? 1_555 ?
17 AC1 18 HOH E . ? HOH A 242 . ? 1_555 ?
18 AC1 18 HOH E . ? HOH A 279 . ? 1_555 ?
19 AC2 3 TYR A 53 ? TYR A 53 . ? 1_555 ?
20 AC2 3 ARG A 92 ? ARG A 92 . ? 1_555 ?
21 AC2 3 ASP A 95 ? ASP A 95 . ? 1_555 ?
22 AC3 8 ALA A 6 ? ALA A 6 . ? 1_555 ?
23 AC3 8 GLY A 8 ? GLY A 8 . ? 1_555 ?
24 AC3 8 ASN A 55 ? ASN A 55 . ? 1_555 ?
25 AC3 8 ASP A 95 ? ASP A 95 . ? 1_555 ?
26 AC3 8 ASP A 97 ? ASP A 97 . ? 1_555 ?
27 AC3 8 PHE A 123 ? PHE A 123 . ? 1_555 ?
28 AC3 8 MET A 124 ? MET A 124 . ? 1_555 ?
29 AC3 8 J1A B . ? J1A A 171 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 3UD5
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.000000
_database_PDB_matrix.origx_vector[2] 0.000000
_database_PDB_matrix.origx_vector[3] 0.000000
#
_atom_sites.entry_id 3UD5
_atom_sites.fract_transf_matrix[1][1] 0.012513
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.002790
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.018926
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.027869
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 ALA 3 3 3 ALA ALA A . n
A 1 4 TYR 4 4 4 TYR TYR A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 ILE 7 7 7 ILE ILE A . n
A 1 8 GLY 8 8 8 GLY GLY A . n
A 1 9 SER 9 9 9 SER SER A . n
A 1 10 ASN 10 10 10 ASN ASN A . n
A 1 11 LEU 11 11 11 LEU LEU A . n
A 1 12 ALA 12 12 12 ALA ALA A . n
A 1 13 SER 13 13 13 SER SER A . n
A 1 14 PRO 14 14 14 PRO PRO A . n
A 1 15 LEU 15 15 15 LEU LEU A . n
A 1 16 GLU 16 16 16 GLU GLU A . n
A 1 17 GLN 17 17 17 GLN GLN A . n
A 1 18 VAL 18 18 18 VAL VAL A . n
A 1 19 ASN 19 19 19 ASN ASN A . n
A 1 20 ALA 20 20 20 ALA ALA A . n
A 1 21 ALA 21 21 21 ALA ALA A . n
A 1 22 LEU 22 22 22 LEU LEU A . n
A 1 23 LYS 23 23 23 LYS LYS A . n
A 1 24 ALA 24 24 24 ALA ALA A . n
A 1 25 LEU 25 25 25 LEU LEU A . n
A 1 26 GLY 26 26 26 GLY GLY A . n
A 1 27 ASP 27 27 27 ASP ASP A . n
A 1 28 ILE 28 28 28 ILE ILE A . n
A 1 29 PRO 29 29 29 PRO PRO A . n
A 1 30 GLU 30 30 30 GLU GLU A . n
A 1 31 SER 31 31 31 SER SER A . n
A 1 32 HIS 32 32 32 HIS HIS A . n
A 1 33 ILE 33 33 33 ILE ILE A . n
A 1 34 LEU 34 34 34 LEU LEU A . n
A 1 35 THR 35 35 35 THR THR A . n
A 1 36 VAL 36 36 36 VAL VAL A . n
A 1 37 SER 37 37 37 SER SER A . n
A 1 38 SER 38 38 38 SER SER A . n
A 1 39 PHE 39 39 39 PHE PHE A . n
A 1 40 TYR 40 40 40 TYR TYR A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 THR 42 42 42 THR THR A . n
A 1 43 PRO 43 43 43 PRO PRO A . n
A 1 44 PRO 44 44 44 PRO PRO A . n
A 1 45 LEU 45 45 45 LEU LEU A . n
A 1 46 GLY 46 46 46 GLY GLY A . n
A 1 47 PRO 47 47 47 PRO PRO A . n
A 1 48 GLN 48 48 48 GLN GLN A . n
A 1 49 ASP 49 49 49 ASP ASP A . n
A 1 50 GLN 50 50 50 GLN GLN A . n
A 1 51 PRO 51 51 51 PRO PRO A . n
A 1 52 ASP 52 52 52 ASP ASP A . n
A 1 53 TYR 53 53 53 TYR TYR A . n
A 1 54 LEU 54 54 54 LEU LEU A . n
A 1 55 ASN 55 55 55 ASN ASN A . n
A 1 56 ALA 56 56 56 ALA ALA A . n
A 1 57 ALA 57 57 57 ALA ALA A . n
A 1 58 VAL 58 58 58 VAL VAL A . n
A 1 59 ALA 59 59 59 ALA ALA A . n
A 1 60 LEU 60 60 60 LEU LEU A . n
A 1 61 GLU 61 61 61 GLU GLU A . n
A 1 62 THR 62 62 62 THR THR A . n
A 1 63 SER 63 63 63 SER SER A . n
A 1 64 LEU 64 64 64 LEU LEU A . n
A 1 65 ALA 65 65 65 ALA ALA A . n
A 1 66 PRO 66 66 66 PRO PRO A . n
A 1 67 GLU 67 67 67 GLU GLU A . n
A 1 68 GLU 68 68 68 GLU GLU A . n
A 1 69 LEU 69 69 69 LEU LEU A . n
A 1 70 LEU 70 70 70 LEU LEU A . n
A 1 71 ASN 71 71 71 ASN ASN A . n
A 1 72 HIS 72 72 72 HIS HIS A . n
A 1 73 THR 73 73 73 THR THR A . n
A 1 74 GLN 74 74 74 GLN GLN A . n
A 1 75 ARG 75 75 75 ARG ARG A . n
A 1 76 ILE 76 76 76 ILE ILE A . n
A 1 77 GLU 77 77 77 GLU GLU A . n
A 1 78 LEU 78 78 78 LEU LEU A . n
A 1 79 GLN 79 79 79 GLN GLN A . n
A 1 80 GLN 80 80 80 GLN GLN A . n
A 1 81 GLY 81 81 81 GLY GLY A . n
A 1 82 ARG 82 82 82 ARG ARG A . n
A 1 83 VAL 83 83 83 VAL VAL A . n
A 1 84 ARG 84 84 84 ARG ARG A . n
A 1 85 LYS 85 85 85 LYS LYS A . n
A 1 86 ALA 86 86 86 ALA ALA A . n
A 1 87 GLU 87 87 87 GLU GLU A . n
A 1 88 ARG 88 88 88 ARG ARG A . n
A 1 89 TRP 89 89 89 TRP TRP A . n
A 1 90 GLY 90 90 90 GLY GLY A . n
A 1 91 PRO 91 91 91 PRO PRO A . n
A 1 92 ARG 92 92 92 ARG ARG A . n
A 1 93 THR 93 93 93 THR THR A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 ASP 95 95 95 ASP ASP A . n
A 1 96 LEU 96 96 96 LEU LEU A . n
A 1 97 ASP 97 97 97 ASP ASP A . n
A 1 98 ILE 98 98 98 ILE ILE A . n
A 1 99 MET 99 99 99 MET MET A . n
A 1 100 LEU 100 100 100 LEU LEU A . n
A 1 101 PHE 101 101 101 PHE PHE A . n
A 1 102 GLY 102 102 102 GLY GLY A . n
A 1 103 ASN 103 103 103 ASN ASN A . n
A 1 104 GLU 104 104 104 GLU GLU A . n
A 1 105 VAL 105 105 105 VAL VAL A . n
A 1 106 ILE 106 106 106 ILE ILE A . n
A 1 107 ASN 107 107 107 ASN ASN A . n
A 1 108 THR 108 108 108 THR THR A . n
A 1 109 GLU 109 109 109 GLU GLU A . n
A 1 110 ARG 110 110 110 ARG ARG A . n
A 1 111 LEU 111 111 111 LEU LEU A . n
A 1 112 THR 112 112 112 THR THR A . n
A 1 113 VAL 113 113 113 VAL VAL A . n
A 1 114 PRO 114 114 114 PRO PRO A . n
A 1 115 HIS 115 115 115 HIS HIS A . n
A 1 116 TYR 116 116 116 TYR TYR A . n
A 1 117 ASP 117 117 117 ASP ASP A . n
A 1 118 MET 118 118 118 MET MET A . n
A 1 119 LYS 119 119 119 LYS LYS A . n
A 1 120 ASN 120 120 120 ASN ASN A . n
A 1 121 ARG 121 121 121 ARG ARG A . n
A 1 122 GLY 122 122 122 GLY GLY A . n
A 1 123 PHE 123 123 123 PHE PHE A . n
A 1 124 MET 124 124 124 MET MET A . n
A 1 125 LEU 125 125 125 LEU LEU A . n
A 1 126 TRP 126 126 126 TRP TRP A . n
A 1 127 PRO 127 127 127 PRO PRO A . n
A 1 128 LEU 128 128 128 LEU LEU A . n
A 1 129 PHE 129 129 129 PHE PHE A . n
A 1 130 GLU 130 130 130 GLU GLU A . n
A 1 131 ILE 131 131 131 ILE ILE A . n
A 1 132 ALA 132 132 132 ALA ALA A . n
A 1 133 PRO 133 133 133 PRO PRO A . n
A 1 134 GLU 134 134 134 GLU GLU A . n
A 1 135 LEU 135 135 135 LEU LEU A . n
A 1 136 VAL 136 136 136 VAL VAL A . n
A 1 137 PHE 137 137 137 PHE PHE A . n
A 1 138 PRO 138 138 138 PRO PRO A . n
A 1 139 ASP 139 139 139 ASP ASP A . n
A 1 140 GLY 140 140 140 GLY GLY A . n
A 1 141 GLU 141 141 141 GLU GLU A . n
A 1 142 MET 142 142 142 MET MET A . n
A 1 143 LEU 143 143 143 LEU LEU A . n
A 1 144 ARG 144 144 144 ARG ARG A . n
A 1 145 GLN 145 145 145 GLN GLN A . n
A 1 146 ILE 146 146 146 ILE ILE A . n
A 1 147 LEU 147 147 147 LEU LEU A . n
A 1 148 HIS 148 148 148 HIS HIS A . n
A 1 149 THR 149 149 149 THR THR A . n
A 1 150 ARG 150 150 150 ARG ARG A . n
A 1 151 ALA 151 151 151 ALA ALA A . n
A 1 152 PHE 152 152 152 PHE PHE A . n
A 1 153 ASP 153 153 153 ASP ASP A . n
A 1 154 LYS 154 154 154 LYS LYS A . n
A 1 155 LEU 155 155 155 LEU LEU A . n
A 1 156 ASN 156 156 156 ASN ASN A . n
A 1 157 LYS 157 157 157 LYS LYS A . n
A 1 158 TRP 158 158 158 TRP TRP A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J1A 1 171 171 J1A J1A A .
C 3 EDO 1 191 191 EDO EDO A .
D 3 EDO 1 192 192 EDO EDO A .
E 4 HOH 1 201 201 HOH HOH A .
E 4 HOH 2 202 202 HOH HOH A .
E 4 HOH 3 203 203 HOH HOH A .
E 4 HOH 4 204 204 HOH HOH A .
E 4 HOH 5 205 205 HOH HOH A .
E 4 HOH 6 206 206 HOH HOH A .
E 4 HOH 7 207 207 HOH HOH A .
E 4 HOH 8 208 208 HOH HOH A .
E 4 HOH 9 209 209 HOH HOH A .
E 4 HOH 10 210 210 HOH HOH A .
E 4 HOH 11 211 211 HOH HOH A .
E 4 HOH 12 212 212 HOH HOH A .
E 4 HOH 13 213 213 HOH HOH A .
E 4 HOH 14 214 214 HOH HOH A .
E 4 HOH 15 215 215 HOH HOH A .
E 4 HOH 16 216 216 HOH HOH A .
E 4 HOH 17 217 217 HOH HOH A .
E 4 HOH 18 218 218 HOH HOH A .
E 4 HOH 19 219 219 HOH HOH A .
E 4 HOH 20 220 220 HOH HOH A .
E 4 HOH 21 221 221 HOH HOH A .
E 4 HOH 22 222 222 HOH HOH A .
E 4 HOH 23 223 223 HOH HOH A .
E 4 HOH 24 224 224 HOH HOH A .
E 4 HOH 25 225 225 HOH HOH A .
E 4 HOH 26 226 226 HOH HOH A .
E 4 HOH 27 227 227 HOH HOH A .
E 4 HOH 28 228 228 HOH HOH A .
E 4 HOH 29 229 229 HOH HOH A .
E 4 HOH 30 230 230 HOH HOH A .
E 4 HOH 31 231 231 HOH HOH A .
E 4 HOH 32 232 232 HOH HOH A .
E 4 HOH 33 233 233 HOH HOH A .
E 4 HOH 34 234 234 HOH HOH A .
E 4 HOH 35 235 235 HOH HOH A .
E 4 HOH 36 236 236 HOH HOH A .
E 4 HOH 37 237 237 HOH HOH A .
E 4 HOH 38 238 238 HOH HOH A .
E 4 HOH 39 239 239 HOH HOH A .
E 4 HOH 40 240 240 HOH HOH A .
E 4 HOH 41 241 241 HOH HOH A .
E 4 HOH 42 242 242 HOH HOH A .
E 4 HOH 43 243 243 HOH HOH A .
E 4 HOH 44 244 244 HOH HOH A .
E 4 HOH 45 245 245 HOH HOH A .
E 4 HOH 46 246 246 HOH HOH A .
E 4 HOH 47 247 247 HOH HOH A .
E 4 HOH 48 248 248 HOH HOH A .
E 4 HOH 49 249 249 HOH HOH A .
E 4 HOH 50 250 250 HOH HOH A .
E 4 HOH 51 251 251 HOH HOH A .
E 4 HOH 52 252 252 HOH HOH A .
E 4 HOH 53 253 253 HOH HOH A .
E 4 HOH 54 254 254 HOH HOH A .
E 4 HOH 55 255 255 HOH HOH A .
E 4 HOH 56 256 256 HOH HOH A .
E 4 HOH 57 257 257 HOH HOH A .
E 4 HOH 58 258 258 HOH HOH A .
E 4 HOH 59 259 259 HOH HOH A .
E 4 HOH 60 260 260 HOH HOH A .
E 4 HOH 61 261 261 HOH HOH A .
E 4 HOH 62 262 262 HOH HOH A .
E 4 HOH 63 263 263 HOH HOH A .
E 4 HOH 64 264 264 HOH HOH A .
E 4 HOH 65 265 265 HOH HOH A .
E 4 HOH 66 266 266 HOH HOH A .
E 4 HOH 67 267 267 HOH HOH A .
E 4 HOH 68 268 268 HOH HOH A .
E 4 HOH 69 269 269 HOH HOH A .
E 4 HOH 70 270 270 HOH HOH A .
E 4 HOH 71 271 271 HOH HOH A .
E 4 HOH 72 272 272 HOH HOH A .
E 4 HOH 73 273 273 HOH HOH A .
E 4 HOH 74 274 274 HOH HOH A .
E 4 HOH 75 275 275 HOH HOH A .
E 4 HOH 76 276 276 HOH HOH A .
E 4 HOH 77 277 277 HOH HOH A .
E 4 HOH 78 278 278 HOH HOH A .
E 4 HOH 79 279 279 HOH HOH A .
E 4 HOH 80 280 280 HOH HOH A .
E 4 HOH 81 281 281 HOH HOH A .
E 4 HOH 82 282 282 HOH HOH A .
E 4 HOH 83 283 283 HOH HOH A .
E 4 HOH 84 284 284 HOH HOH A .
E 4 HOH 85 285 285 HOH HOH A .
E 4 HOH 86 286 286 HOH HOH A .
E 4 HOH 87 287 287 HOH HOH A .
E 4 HOH 88 288 288 HOH HOH A .
E 4 HOH 89 289 289 HOH HOH A .
E 4 HOH 90 290 290 HOH HOH A .
E 4 HOH 91 291 291 HOH HOH A .
E 4 HOH 92 292 292 HOH HOH A .
E 4 HOH 93 293 293 HOH HOH A .
E 4 HOH 94 294 294 HOH HOH A .
E 4 HOH 95 295 295 HOH HOH A .
E 4 HOH 96 296 296 HOH HOH A .
E 4 HOH 97 297 297 HOH HOH A .
E 4 HOH 98 298 298 HOH HOH A .
E 4 HOH 99 299 299 HOH HOH A .
E 4 HOH 100 300 300 HOH HOH A .
E 4 HOH 101 301 301 HOH HOH A .
E 4 HOH 102 302 302 HOH HOH A .
E 4 HOH 103 303 303 HOH HOH A .
E 4 HOH 104 304 304 HOH HOH A .
E 4 HOH 105 305 305 HOH HOH A .
E 4 HOH 106 306 306 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-01-04
2 'Structure model' 1 1 2012-01-18
3 'Structure model' 1 2 2023-08-30
4 'Structure model' 1 3 2023-09-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Structure summary'
6 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' audit_author
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' citation_author
5 3 'Structure model' database_2
6 3 'Structure model' struct_site
7 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_audit_author.identifier_ORCID'
2 3 'Structure model' '_citation_author.identifier_ORCID'
3 3 'Structure model' '_database_2.pdbx_DOI'
4 3 'Structure model' '_database_2.pdbx_database_accession'
5 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
_diffrn_reflns.diffrn_id 1
_diffrn_reflns.pdbx_d_res_high 1.900
_diffrn_reflns.pdbx_d_res_low 30.000
_diffrn_reflns.pdbx_number_obs 10236
_diffrn_reflns.pdbx_Rmerge_I_obs 0.089
_diffrn_reflns.pdbx_Rsym_value ?
_diffrn_reflns.pdbx_chi_squared 0.92
_diffrn_reflns.av_sigmaI_over_netI ?
_diffrn_reflns.pdbx_redundancy 6.50
_diffrn_reflns.pdbx_percent_possible_obs 87.00
_diffrn_reflns.number 66903
_diffrn_reflns.pdbx_observed_criterion ?
_diffrn_reflns.limit_h_max ?
_diffrn_reflns.limit_h_min ?
_diffrn_reflns.limit_k_max ?
_diffrn_reflns.limit_k_min ?
_diffrn_reflns.limit_l_max ?
_diffrn_reflns.limit_l_min ?
#
loop_
_pdbx_diffrn_reflns_shell.diffrn_id
_pdbx_diffrn_reflns_shell.d_res_high
_pdbx_diffrn_reflns_shell.d_res_low
_pdbx_diffrn_reflns_shell.number_obs
_pdbx_diffrn_reflns_shell.rejects
_pdbx_diffrn_reflns_shell.Rmerge_I_obs
_pdbx_diffrn_reflns_shell.Rsym_value
_pdbx_diffrn_reflns_shell.chi_squared
_pdbx_diffrn_reflns_shell.redundancy
_pdbx_diffrn_reflns_shell.percent_possible_obs
1 1.90 1.97 ? ? 0.320 ? 0.904 5.30 61.70
1 1.97 2.05 ? ? 0.252 ? 0.919 5.80 67.30
1 2.05 2.14 ? ? 0.219 ? 0.755 6.20 75.40
1 2.14 2.25 ? ? 0.184 ? 0.895 6.30 81.70
1 2.25 2.39 ? ? 0.161 ? 0.965 6.50 91.50
1 2.39 2.58 ? ? 0.139 ? 0.960 6.80 97.80
1 2.58 2.84 ? ? 0.116 ? 0.949 7.10 99.70
1 2.84 3.25 ? ? 0.087 ? 0.990 7.10 99.70
1 3.25 4.09 ? ? 0.069 ? 0.860 6.80 97.10
1 4.09 30.00 ? ? 0.066 ? 0.955 6.60 97.70
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement
http://www.phenix-online.org/ C++ ?
2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
3 HKL-2000 . ? ? ? ? 'data collection' ? ? ?
4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ?
5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ?
6 PHENIX . ? ? ? ? phasing ? ? ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 LYS A 85 ? ? -112.11 55.47
2 1 ALA A 86 ? ? 70.40 -74.25
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
EDO C1 C N N 74
EDO O1 O N N 75
EDO C2 C N N 76
EDO O2 O N N 77
EDO H11 H N N 78
EDO H12 H N N 79
EDO HO1 H N N 80
EDO H21 H N N 81
EDO H22 H N N 82
EDO HO2 H N N 83
GLN N N N N 84
GLN CA C N S 85
GLN C C N N 86
GLN O O N N 87
GLN CB C N N 88
GLN CG C N N 89
GLN CD C N N 90
GLN OE1 O N N 91
GLN NE2 N N N 92
GLN OXT O N N 93
GLN H H N N 94
GLN H2 H N N 95
GLN HA H N N 96
GLN HB2 H N N 97
GLN HB3 H N N 98
GLN HG2 H N N 99
GLN HG3 H N N 100
GLN HE21 H N N 101
GLN HE22 H N N 102
GLN HXT H N N 103
GLU N N N N 104
GLU CA C N S 105
GLU C C N N 106
GLU O O N N 107
GLU CB C N N 108
GLU CG C N N 109
GLU CD C N N 110
GLU OE1 O N N 111
GLU OE2 O N N 112
GLU OXT O N N 113
GLU H H N N 114
GLU H2 H N N 115
GLU HA H N N 116
GLU HB2 H N N 117
GLU HB3 H N N 118
GLU HG2 H N N 119
GLU HG3 H N N 120
GLU HE2 H N N 121
GLU HXT H N N 122
GLY N N N N 123
GLY CA C N N 124
GLY C C N N 125
GLY O O N N 126
GLY OXT O N N 127
GLY H H N N 128
GLY H2 H N N 129
GLY HA2 H N N 130
GLY HA3 H N N 131
GLY HXT H N N 132
HIS N N N N 133
HIS CA C N S 134
HIS C C N N 135
HIS O O N N 136
HIS CB C N N 137
HIS CG C Y N 138
HIS ND1 N Y N 139
HIS CD2 C Y N 140
HIS CE1 C Y N 141
HIS NE2 N Y N 142
HIS OXT O N N 143
HIS H H N N 144
HIS H2 H N N 145
HIS HA H N N 146
HIS HB2 H N N 147
HIS HB3 H N N 148
HIS HD1 H N N 149
HIS HD2 H N N 150
HIS HE1 H N N 151
HIS HE2 H N N 152
HIS HXT H N N 153
HOH O O N N 154
HOH H1 H N N 155
HOH H2 H N N 156
ILE N N N N 157
ILE CA C N S 158
ILE C C N N 159
ILE O O N N 160
ILE CB C N S 161
ILE CG1 C N N 162
ILE CG2 C N N 163
ILE CD1 C N N 164
ILE OXT O N N 165
ILE H H N N 166
ILE H2 H N N 167
ILE HA H N N 168
ILE HB H N N 169
ILE HG12 H N N 170
ILE HG13 H N N 171
ILE HG21 H N N 172
ILE HG22 H N N 173
ILE HG23 H N N 174
ILE HD11 H N N 175
ILE HD12 H N N 176
ILE HD13 H N N 177
ILE HXT H N N 178
J1A C1 C N S 179
J1A N1 N Y N 180
J1A O1 O N N 181
J1A S1 S N N 182
J1A C2 C N S 183
J1A N2 N Y N 184
J1A O2 O N N 185
J1A C3 C N R 186
J1A N3 N N N 187
J1A O3 O N N 188
J1A C4 C N R 189
J1A N4 N Y N 190
J1A O4 O N N 191
J1A C5 C Y N 192
J1A N5 N Y N 193
J1A C6 C Y N 194
J1A N6 N N N 195
J1A C7 C Y N 196
J1A C8 C Y N 197
J1A N8 N N N 198
J1A C9 C Y N 199
J1A N9 N N N 200
J1A C10 C N N 201
J1A N10 N N N 202
J1A C11 C N N 203
J1A N11 N Y N 204
J1A C12 C N N 205
J1A N12 N Y N 206
J1A C13 C N N 207
J1A C14 C N N 208
J1A C15 C N N 209
J1A C16 C N N 210
J1A C18 C N N 211
J1A C19 C N N 212
J1A C20 C N N 213
J1A C21 C Y N 214
J1A C22 C Y N 215
J1A C25 C Y N 216
J1A C26 C Y N 217
J1A C27 C N N 218
J1A N28 N N N 219
J1A H1 H N N 220
J1A H2 H N N 221
J1A HO2 H N N 222
J1A H3 H N N 223
J1A HN3 H N N 224
J1A HN3A H N N 225
J1A HO3 H N N 226
J1A H4 H N N 227
J1A H5 H N N 228
J1A H8 H N N 229
J1A HN9 H N N 230
J1A HN9A H N N 231
J1A H10 H N N 232
J1A H10A H N N 233
J1A HN10 H N N 234
J1A H11 H N N 235
J1A H12 H N N 236
J1A H12A H N N 237
J1A H13 H N N 238
J1A H13A H N N 239
J1A H14 H N N 240
J1A H14A H N N 241
J1A H15 H N N 242
J1A H15A H N N 243
J1A H16 H N N 244
J1A H16A H N N 245
J1A H18 H N N 246
J1A H18A H N N 247
J1A H22 H N N 248
J1A H27 H N N 249
J1A H27A H N N 250
J1A HN28 H N N 251
LEU N N N N 252
LEU CA C N S 253
LEU C C N N 254
LEU O O N N 255
LEU CB C N N 256
LEU CG C N N 257
LEU CD1 C N N 258
LEU CD2 C N N 259
LEU OXT O N N 260
LEU H H N N 261
LEU H2 H N N 262
LEU HA H N N 263
LEU HB2 H N N 264
LEU HB3 H N N 265
LEU HG H N N 266
LEU HD11 H N N 267
LEU HD12 H N N 268
LEU HD13 H N N 269
LEU HD21 H N N 270
LEU HD22 H N N 271
LEU HD23 H N N 272
LEU HXT H N N 273
LYS N N N N 274
LYS CA C N S 275
LYS C C N N 276
LYS O O N N 277
LYS CB C N N 278
LYS CG C N N 279
LYS CD C N N 280
LYS CE C N N 281
LYS NZ N N N 282
LYS OXT O N N 283
LYS H H N N 284
LYS H2 H N N 285
LYS HA H N N 286
LYS HB2 H N N 287
LYS HB3 H N N 288
LYS HG2 H N N 289
LYS HG3 H N N 290
LYS HD2 H N N 291
LYS HD3 H N N 292
LYS HE2 H N N 293
LYS HE3 H N N 294
LYS HZ1 H N N 295
LYS HZ2 H N N 296
LYS HZ3 H N N 297
LYS HXT H N N 298
MET N N N N 299
MET CA C N S 300
MET C C N N 301
MET O O N N 302
MET CB C N N 303
MET CG C N N 304
MET SD S N N 305
MET CE C N N 306
MET OXT O N N 307
MET H H N N 308
MET H2 H N N 309
MET HA H N N 310
MET HB2 H N N 311
MET HB3 H N N 312
MET HG2 H N N 313
MET HG3 H N N 314
MET HE1 H N N 315
MET HE2 H N N 316
MET HE3 H N N 317
MET HXT H N N 318
PHE N N N N 319
PHE CA C N S 320
PHE C C N N 321
PHE O O N N 322
PHE CB C N N 323
PHE CG C Y N 324
PHE CD1 C Y N 325
PHE CD2 C Y N 326
PHE CE1 C Y N 327
PHE CE2 C Y N 328
PHE CZ C Y N 329
PHE OXT O N N 330
PHE H H N N 331
PHE H2 H N N 332
PHE HA H N N 333
PHE HB2 H N N 334
PHE HB3 H N N 335
PHE HD1 H N N 336
PHE HD2 H N N 337
PHE HE1 H N N 338
PHE HE2 H N N 339
PHE HZ H N N 340
PHE HXT H N N 341
PRO N N N N 342
PRO CA C N S 343
PRO C C N N 344
PRO O O N N 345
PRO CB C N N 346
PRO CG C N N 347
PRO CD C N N 348
PRO OXT O N N 349
PRO H H N N 350
PRO HA H N N 351
PRO HB2 H N N 352
PRO HB3 H N N 353
PRO HG2 H N N 354
PRO HG3 H N N 355
PRO HD2 H N N 356
PRO HD3 H N N 357
PRO HXT H N N 358
SER N N N N 359
SER CA C N S 360
SER C C N N 361
SER O O N N 362
SER CB C N N 363
SER OG O N N 364
SER OXT O N N 365
SER H H N N 366
SER H2 H N N 367
SER HA H N N 368
SER HB2 H N N 369
SER HB3 H N N 370
SER HG H N N 371
SER HXT H N N 372
THR N N N N 373
THR CA C N S 374
THR C C N N 375
THR O O N N 376
THR CB C N R 377
THR OG1 O N N 378
THR CG2 C N N 379
THR OXT O N N 380
THR H H N N 381
THR H2 H N N 382
THR HA H N N 383
THR HB H N N 384
THR HG1 H N N 385
THR HG21 H N N 386
THR HG22 H N N 387
THR HG23 H N N 388
THR HXT H N N 389
TRP N N N N 390
TRP CA C N S 391
TRP C C N N 392
TRP O O N N 393
TRP CB C N N 394
TRP CG C Y N 395
TRP CD1 C Y N 396
TRP CD2 C Y N 397
TRP NE1 N Y N 398
TRP CE2 C Y N 399
TRP CE3 C Y N 400
TRP CZ2 C Y N 401
TRP CZ3 C Y N 402
TRP CH2 C Y N 403
TRP OXT O N N 404
TRP H H N N 405
TRP H2 H N N 406
TRP HA H N N 407
TRP HB2 H N N 408
TRP HB3 H N N 409
TRP HD1 H N N 410
TRP HE1 H N N 411
TRP HE3 H N N 412
TRP HZ2 H N N 413
TRP HZ3 H N N 414
TRP HH2 H N N 415
TRP HXT H N N 416
TYR N N N N 417
TYR CA C N S 418
TYR C C N N 419
TYR O O N N 420
TYR CB C N N 421
TYR CG C Y N 422
TYR CD1 C Y N 423
TYR CD2 C Y N 424
TYR CE1 C Y N 425
TYR CE2 C Y N 426
TYR CZ C Y N 427
TYR OH O N N 428
TYR OXT O N N 429
TYR H H N N 430
TYR H2 H N N 431
TYR HA H N N 432
TYR HB2 H N N 433
TYR HB3 H N N 434
TYR HD1 H N N 435
TYR HD2 H N N 436
TYR HE1 H N N 437
TYR HE2 H N N 438
TYR HH H N N 439
TYR HXT H N N 440
VAL N N N N 441
VAL CA C N S 442
VAL C C N N 443
VAL O O N N 444
VAL CB C N N 445
VAL CG1 C N N 446
VAL CG2 C N N 447
VAL OXT O N N 448
VAL H H N N 449
VAL H2 H N N 450
VAL HA H N N 451
VAL HB H N N 452
VAL HG11 H N N 453
VAL HG12 H N N 454
VAL HG13 H N N 455
VAL HG21 H N N 456
VAL HG22 H N N 457
VAL HG23 H N N 458
VAL HXT H N N 459
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
EDO C1 O1 sing N N 70
EDO C1 C2 sing N N 71
EDO C1 H11 sing N N 72
EDO C1 H12 sing N N 73
EDO O1 HO1 sing N N 74
EDO C2 O2 sing N N 75
EDO C2 H21 sing N N 76
EDO C2 H22 sing N N 77
EDO O2 HO2 sing N N 78
GLN N CA sing N N 79
GLN N H sing N N 80
GLN N H2 sing N N 81
GLN CA C sing N N 82
GLN CA CB sing N N 83
GLN CA HA sing N N 84
GLN C O doub N N 85
GLN C OXT sing N N 86
GLN CB CG sing N N 87
GLN CB HB2 sing N N 88
GLN CB HB3 sing N N 89
GLN CG CD sing N N 90
GLN CG HG2 sing N N 91
GLN CG HG3 sing N N 92
GLN CD OE1 doub N N 93
GLN CD NE2 sing N N 94
GLN NE2 HE21 sing N N 95
GLN NE2 HE22 sing N N 96
GLN OXT HXT sing N N 97
GLU N CA sing N N 98
GLU N H sing N N 99
GLU N H2 sing N N 100
GLU CA C sing N N 101
GLU CA CB sing N N 102
GLU CA HA sing N N 103
GLU C O doub N N 104
GLU C OXT sing N N 105
GLU CB CG sing N N 106
GLU CB HB2 sing N N 107
GLU CB HB3 sing N N 108
GLU CG CD sing N N 109
GLU CG HG2 sing N N 110
GLU CG HG3 sing N N 111
GLU CD OE1 doub N N 112
GLU CD OE2 sing N N 113
GLU OE2 HE2 sing N N 114
GLU OXT HXT sing N N 115
GLY N CA sing N N 116
GLY N H sing N N 117
GLY N H2 sing N N 118
GLY CA C sing N N 119
GLY CA HA2 sing N N 120
GLY CA HA3 sing N N 121
GLY C O doub N N 122
GLY C OXT sing N N 123
GLY OXT HXT sing N N 124
HIS N CA sing N N 125
HIS N H sing N N 126
HIS N H2 sing N N 127
HIS CA C sing N N 128
HIS CA CB sing N N 129
HIS CA HA sing N N 130
HIS C O doub N N 131
HIS C OXT sing N N 132
HIS CB CG sing N N 133
HIS CB HB2 sing N N 134
HIS CB HB3 sing N N 135
HIS CG ND1 sing Y N 136
HIS CG CD2 doub Y N 137
HIS ND1 CE1 doub Y N 138
HIS ND1 HD1 sing N N 139
HIS CD2 NE2 sing Y N 140
HIS CD2 HD2 sing N N 141
HIS CE1 NE2 sing Y N 142
HIS CE1 HE1 sing N N 143
HIS NE2 HE2 sing N N 144
HIS OXT HXT sing N N 145
HOH O H1 sing N N 146
HOH O H2 sing N N 147
ILE N CA sing N N 148
ILE N H sing N N 149
ILE N H2 sing N N 150
ILE CA C sing N N 151
ILE CA CB sing N N 152
ILE CA HA sing N N 153
ILE C O doub N N 154
ILE C OXT sing N N 155
ILE CB CG1 sing N N 156
ILE CB CG2 sing N N 157
ILE CB HB sing N N 158
ILE CG1 CD1 sing N N 159
ILE CG1 HG12 sing N N 160
ILE CG1 HG13 sing N N 161
ILE CG2 HG21 sing N N 162
ILE CG2 HG22 sing N N 163
ILE CG2 HG23 sing N N 164
ILE CD1 HD11 sing N N 165
ILE CD1 HD12 sing N N 166
ILE CD1 HD13 sing N N 167
ILE OXT HXT sing N N 168
J1A C2 C1 sing N N 169
J1A C10 C1 sing N N 170
J1A C1 O1 sing N N 171
J1A C1 H1 sing N N 172
J1A C4 N1 sing N N 173
J1A N1 C9 sing Y N 174
J1A N1 C5 sing Y N 175
J1A O1 C4 sing N N 176
J1A C10 S1 sing N N 177
J1A S1 C11 sing N N 178
J1A O2 C2 sing N N 179
J1A C2 C3 sing N N 180
J1A C2 H2 sing N N 181
J1A C5 N2 doub Y N 182
J1A C6 N2 sing Y N 183
J1A O2 HO2 sing N N 184
J1A O3 C3 sing N N 185
J1A C3 C4 sing N N 186
J1A C3 H3 sing N N 187
J1A C7 N3 sing N N 188
J1A N3 HN3 sing N N 189
J1A N3 HN3A sing N N 190
J1A O3 HO3 sing N N 191
J1A C4 H4 sing N N 192
J1A C8 N4 doub Y N 193
J1A N4 C7 sing Y N 194
J1A O4 C20 doub N N 195
J1A C5 H5 sing N N 196
J1A N5 C9 doub Y N 197
J1A N5 C8 sing Y N 198
J1A C9 C6 sing Y N 199
J1A C6 C7 doub Y N 200
J1A C13 N6 sing N N 201
J1A N6 C14 sing N N 202
J1A N6 C16 sing N N 203
J1A C8 H8 sing N N 204
J1A C25 N8 sing N N 205
J1A N8 C19 doub N N 206
J1A C19 N9 sing N N 207
J1A N9 HN9 sing N N 208
J1A N9 HN9A sing N N 209
J1A C10 H10 sing N N 210
J1A C10 H10A sing N N 211
J1A C20 N10 sing N N 212
J1A N10 C19 sing N N 213
J1A N10 HN10 sing N N 214
J1A C12 C11 sing N N 215
J1A C11 C15 sing N N 216
J1A C11 H11 sing N N 217
J1A C21 N11 doub Y N 218
J1A N11 C26 sing Y N 219
J1A C12 C13 sing N N 220
J1A C12 H12 sing N N 221
J1A C12 H12A sing N N 222
J1A C22 N12 doub Y N 223
J1A N12 C25 sing Y N 224
J1A C13 H13 sing N N 225
J1A C13 H13A sing N N 226
J1A C15 C14 sing N N 227
J1A C14 H14 sing N N 228
J1A C14 H14A sing N N 229
J1A C15 H15 sing N N 230
J1A C15 H15A sing N N 231
J1A C16 C27 sing N N 232
J1A C16 H16 sing N N 233
J1A C16 H16A sing N N 234
J1A N28 C18 sing N N 235
J1A C18 C21 sing N N 236
J1A C18 H18 sing N N 237
J1A C18 H18A sing N N 238
J1A C26 C20 sing N N 239
J1A C21 C22 sing Y N 240
J1A C22 H22 sing N N 241
J1A C26 C25 doub Y N 242
J1A N28 C27 sing N N 243
J1A C27 H27 sing N N 244
J1A C27 H27A sing N N 245
J1A N28 HN28 sing N N 246
LEU N CA sing N N 247
LEU N H sing N N 248
LEU N H2 sing N N 249
LEU CA C sing N N 250
LEU CA CB sing N N 251
LEU CA HA sing N N 252
LEU C O doub N N 253
LEU C OXT sing N N 254
LEU CB CG sing N N 255
LEU CB HB2 sing N N 256
LEU CB HB3 sing N N 257
LEU CG CD1 sing N N 258
LEU CG CD2 sing N N 259
LEU CG HG sing N N 260
LEU CD1 HD11 sing N N 261
LEU CD1 HD12 sing N N 262
LEU CD1 HD13 sing N N 263
LEU CD2 HD21 sing N N 264
LEU CD2 HD22 sing N N 265
LEU CD2 HD23 sing N N 266
LEU OXT HXT sing N N 267
LYS N CA sing N N 268
LYS N H sing N N 269
LYS N H2 sing N N 270
LYS CA C sing N N 271
LYS CA CB sing N N 272
LYS CA HA sing N N 273
LYS C O doub N N 274
LYS C OXT sing N N 275
LYS CB CG sing N N 276
LYS CB HB2 sing N N 277
LYS CB HB3 sing N N 278
LYS CG CD sing N N 279
LYS CG HG2 sing N N 280
LYS CG HG3 sing N N 281
LYS CD CE sing N N 282
LYS CD HD2 sing N N 283
LYS CD HD3 sing N N 284
LYS CE NZ sing N N 285
LYS CE HE2 sing N N 286
LYS CE HE3 sing N N 287
LYS NZ HZ1 sing N N 288
LYS NZ HZ2 sing N N 289
LYS NZ HZ3 sing N N 290
LYS OXT HXT sing N N 291
MET N CA sing N N 292
MET N H sing N N 293
MET N H2 sing N N 294
MET CA C sing N N 295
MET CA CB sing N N 296
MET CA HA sing N N 297
MET C O doub N N 298
MET C OXT sing N N 299
MET CB CG sing N N 300
MET CB HB2 sing N N 301
MET CB HB3 sing N N 302
MET CG SD sing N N 303
MET CG HG2 sing N N 304
MET CG HG3 sing N N 305
MET SD CE sing N N 306
MET CE HE1 sing N N 307
MET CE HE2 sing N N 308
MET CE HE3 sing N N 309
MET OXT HXT sing N N 310
PHE N CA sing N N 311
PHE N H sing N N 312
PHE N H2 sing N N 313
PHE CA C sing N N 314
PHE CA CB sing N N 315
PHE CA HA sing N N 316
PHE C O doub N N 317
PHE C OXT sing N N 318
PHE CB CG sing N N 319
PHE CB HB2 sing N N 320
PHE CB HB3 sing N N 321
PHE CG CD1 doub Y N 322
PHE CG CD2 sing Y N 323
PHE CD1 CE1 sing Y N 324
PHE CD1 HD1 sing N N 325
PHE CD2 CE2 doub Y N 326
PHE CD2 HD2 sing N N 327
PHE CE1 CZ doub Y N 328
PHE CE1 HE1 sing N N 329
PHE CE2 CZ sing Y N 330
PHE CE2 HE2 sing N N 331
PHE CZ HZ sing N N 332
PHE OXT HXT sing N N 333
PRO N CA sing N N 334
PRO N CD sing N N 335
PRO N H sing N N 336
PRO CA C sing N N 337
PRO CA CB sing N N 338
PRO CA HA sing N N 339
PRO C O doub N N 340
PRO C OXT sing N N 341
PRO CB CG sing N N 342
PRO CB HB2 sing N N 343
PRO CB HB3 sing N N 344
PRO CG CD sing N N 345
PRO CG HG2 sing N N 346
PRO CG HG3 sing N N 347
PRO CD HD2 sing N N 348
PRO CD HD3 sing N N 349
PRO OXT HXT sing N N 350
SER N CA sing N N 351
SER N H sing N N 352
SER N H2 sing N N 353
SER CA C sing N N 354
SER CA CB sing N N 355
SER CA HA sing N N 356
SER C O doub N N 357
SER C OXT sing N N 358
SER CB OG sing N N 359
SER CB HB2 sing N N 360
SER CB HB3 sing N N 361
SER OG HG sing N N 362
SER OXT HXT sing N N 363
THR N CA sing N N 364
THR N H sing N N 365
THR N H2 sing N N 366
THR CA C sing N N 367
THR CA CB sing N N 368
THR CA HA sing N N 369
THR C O doub N N 370
THR C OXT sing N N 371
THR CB OG1 sing N N 372
THR CB CG2 sing N N 373
THR CB HB sing N N 374
THR OG1 HG1 sing N N 375
THR CG2 HG21 sing N N 376
THR CG2 HG22 sing N N 377
THR CG2 HG23 sing N N 378
THR OXT HXT sing N N 379
TRP N CA sing N N 380
TRP N H sing N N 381
TRP N H2 sing N N 382
TRP CA C sing N N 383
TRP CA CB sing N N 384
TRP CA HA sing N N 385
TRP C O doub N N 386
TRP C OXT sing N N 387
TRP CB CG sing N N 388
TRP CB HB2 sing N N 389
TRP CB HB3 sing N N 390
TRP CG CD1 doub Y N 391
TRP CG CD2 sing Y N 392
TRP CD1 NE1 sing Y N 393
TRP CD1 HD1 sing N N 394
TRP CD2 CE2 doub Y N 395
TRP CD2 CE3 sing Y N 396
TRP NE1 CE2 sing Y N 397
TRP NE1 HE1 sing N N 398
TRP CE2 CZ2 sing Y N 399
TRP CE3 CZ3 doub Y N 400
TRP CE3 HE3 sing N N 401
TRP CZ2 CH2 doub Y N 402
TRP CZ2 HZ2 sing N N 403
TRP CZ3 CH2 sing Y N 404
TRP CZ3 HZ3 sing N N 405
TRP CH2 HH2 sing N N 406
TRP OXT HXT sing N N 407
TYR N CA sing N N 408
TYR N H sing N N 409
TYR N H2 sing N N 410
TYR CA C sing N N 411
TYR CA CB sing N N 412
TYR CA HA sing N N 413
TYR C O doub N N 414
TYR C OXT sing N N 415
TYR CB CG sing N N 416
TYR CB HB2 sing N N 417
TYR CB HB3 sing N N 418
TYR CG CD1 doub Y N 419
TYR CG CD2 sing Y N 420
TYR CD1 CE1 sing Y N 421
TYR CD1 HD1 sing N N 422
TYR CD2 CE2 doub Y N 423
TYR CD2 HD2 sing N N 424
TYR CE1 CZ doub Y N 425
TYR CE1 HE1 sing N N 426
TYR CE2 CZ sing Y N 427
TYR CE2 HE2 sing N N 428
TYR CZ OH sing N N 429
TYR OH HH sing N N 430
TYR OXT HXT sing N N 431
VAL N CA sing N N 432
VAL N H sing N N 433
VAL N H2 sing N N 434
VAL CA C sing N N 435
VAL CA CB sing N N 436
VAL CA HA sing N N 437
VAL C O doub N N 438
VAL C OXT sing N N 439
VAL CB CG1 sing N N 440
VAL CB CG2 sing N N 441
VAL CB HB sing N N 442
VAL CG1 HG11 sing N N 443
VAL CG1 HG12 sing N N 444
VAL CG1 HG13 sing N N 445
VAL CG2 HG21 sing N N 446
VAL CG2 HG22 sing N N 447
VAL CG2 HG23 sing N N 448
VAL OXT HXT sing N N 449
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "5'-S-[1-(2-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" J1A
3 1,2-ETHANEDIOL EDO
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1EQM
_pdbx_initial_refinement_model.details 'PDB entry 1EQM'
#