HEADER HORMONE 27-OCT-11 3UD7 TITLE CRYSTAL STRUCTURE ANALYSIS OF FGF1-DISACCHARIDE(NI21) COMPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEPARIN-BINDING GROWTH FACTOR 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HBGF-1, ACIDIC FIBROBLAST GROWTH FACTOR, AFGF, BETA- COMPND 5 ENDOTHELIAL CELL GROWTH FACTOR, ECGF-BETA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS HEPARIN/HEPARAN SULFATE BINDING, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR S.-C.HUNG,Z.SHI REVDAT 4 01-NOV-23 3UD7 1 HETSYN REVDAT 3 29-JUL-20 3UD7 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 16-JAN-13 3UD7 1 JRNL REVDAT 1 28-NOV-12 3UD7 0 JRNL AUTH Y.-P.HU,Y.-Q.ZHONG,Z.-G.CHEN,C.-Y.CHEN,Z.SHI,M.M.L.ZULUETA, JRNL AUTH 2 C.-C.KU,P.-Y.LEE,C.-C.WANG,S.-C.HUNG JRNL TITL DIVERGENT SYNTHESIS OF 48 HEPARAN SULFATE-BASED JRNL TITL 2 DISACCHARIDES AND PROBING THE SPECIFIC SUGAR-FIBROBLAST JRNL TITL 3 GROWTH FACTOR-1 INTERACTION JRNL REF J.AM.CHEM.SOC. V. 134 20722 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 23240683 JRNL DOI 10.1021/JA3090065 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 9734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1069 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3039 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : 3.47000 REMARK 3 B33 (A**2) : 0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.440 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.322 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.705 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3165 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4276 ; 1.621 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;38.477 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;19.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2362 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1887 ; 0.729 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3029 ; 1.283 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 1.752 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1247 ; 3.027 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): -6.5035 -0.4339 32.1935 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.1510 REMARK 3 T33: 0.1538 T12: 0.0069 REMARK 3 T13: -0.0012 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.9504 L22: 1.8648 REMARK 3 L33: 1.3371 L12: -0.2875 REMARK 3 L13: -0.3040 L23: 0.1851 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: 0.0728 S13: -0.0980 REMARK 3 S21: -0.0778 S22: -0.0904 S23: -0.0381 REMARK 3 S31: -0.0659 S32: -0.0877 S33: 0.1039 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 11 B 137 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3506 3.3501 59.6755 REMARK 3 T TENSOR REMARK 3 T11: 0.1370 T22: 0.1790 REMARK 3 T33: 0.1204 T12: -0.0014 REMARK 3 T13: 0.0263 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.6932 L22: 1.8565 REMARK 3 L33: 1.1865 L12: -0.0536 REMARK 3 L13: 0.1802 L23: -0.4477 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0573 S13: -0.0355 REMARK 3 S21: -0.0049 S22: 0.0298 S23: 0.0073 REMARK 3 S31: -0.0085 S32: -0.0199 S33: 0.0160 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 137 REMARK 3 ORIGIN FOR THE GROUP (A): -42.1946 16.4643 72.0346 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1591 REMARK 3 T33: 0.1243 T12: 0.0462 REMARK 3 T13: -0.0025 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.6880 L22: 1.2301 REMARK 3 L33: 1.7679 L12: 0.0498 REMARK 3 L13: 0.1583 L23: 0.4692 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: 0.0647 S13: 0.0501 REMARK 3 S21: 0.0072 S22: -0.0155 S23: -0.0297 REMARK 3 S31: -0.0269 S32: -0.0166 S33: 0.0466 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 141 C 142 REMARK 3 RESIDUE RANGE : B 141 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8101 24.2004 60.9626 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.2320 REMARK 3 T33: 0.2847 T12: 0.0094 REMARK 3 T13: -0.1176 T23: 0.1587 REMARK 3 L TENSOR REMARK 3 L11: 0.5620 L22: 7.0267 REMARK 3 L33: 9.5642 L12: 1.9847 REMARK 3 L13: 2.1699 L23: 7.5251 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.1200 S13: 0.0722 REMARK 3 S21: 0.1182 S22: -0.4208 S23: 0.2174 REMARK 3 S31: -0.3328 S32: -0.6982 S33: 0.4100 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 144 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -19.6614 17.1362 59.6635 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.3379 REMARK 3 T33: 0.3318 T12: 0.0379 REMARK 3 T13: -0.0544 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 12.6286 L22: 10.9276 REMARK 3 L33: 0.2733 L12: -11.7293 REMARK 3 L13: 1.7570 L23: -1.6030 REMARK 3 S TENSOR REMARK 3 S11: -0.8461 S12: -1.1497 S13: 0.0866 REMARK 3 S21: 0.7659 S22: 0.9566 S23: -0.1674 REMARK 3 S31: -0.0731 S32: -0.2148 S33: -0.1105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10803 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 80.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : 0.43800 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1RG8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M (NH4)HPO4, 0.1M SODIUM ACETATE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.57450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.53850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.57450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.53850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 PHE A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 TYR A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 SER A 138 REMARK 465 SER A 139 REMARK 465 ASP A 140 REMARK 465 MET B 0 REMARK 465 PHE B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 ASN B 7 REMARK 465 TYR B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 465 SER B 138 REMARK 465 SER B 139 REMARK 465 ASP B 140 REMARK 465 MET C 0 REMARK 465 PHE C 1 REMARK 465 ASN C 2 REMARK 465 LEU C 3 REMARK 465 PRO C 4 REMARK 465 PRO C 5 REMARK 465 GLY C 6 REMARK 465 ASN C 7 REMARK 465 TYR C 8 REMARK 465 LYS C 9 REMARK 465 LYS C 10 REMARK 465 SER C 138 REMARK 465 SER C 139 REMARK 465 ASP C 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU C 13 O PRO C 134 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 26 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 LEU C 135 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -166.15 -168.58 REMARK 500 GLU A 49 -85.98 -82.48 REMARK 500 ASP A 68 -168.43 -76.13 REMARK 500 ASN A 80 -174.82 169.61 REMARK 500 ASN A 92 -163.18 -78.65 REMARK 500 SER A 99 102.14 -54.07 REMARK 500 LYS A 105 4.72 -64.06 REMARK 500 ASN B 18 -70.69 -59.73 REMARK 500 VAL B 51 115.21 -11.30 REMARK 500 GLU B 60 -77.64 -68.44 REMARK 500 ASN B 92 -126.80 -119.49 REMARK 500 HIS B 93 -39.98 -4.31 REMARK 500 CYS B 117 151.74 -49.51 REMARK 500 ASN C 18 -81.15 -20.15 REMARK 500 GLU C 90 -127.73 -147.92 REMARK 500 GLU C 91 -136.48 30.07 REMARK 500 ASN C 92 -169.88 46.15 REMARK 500 PRO C 134 -100.41 -45.73 REMARK 500 LEU C 135 146.31 73.56 REMARK 500 PRO C 136 -163.37 -111.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UD8 RELATED DB: PDB REMARK 900 RELATED ID: 3UD9 RELATED DB: PDB REMARK 900 RELATED ID: 3UDA RELATED DB: PDB DBREF 3UD7 A 1 140 UNP P05230 FGF1_HUMAN 16 155 DBREF 3UD7 B 1 140 UNP P05230 FGF1_HUMAN 16 155 DBREF 3UD7 C 1 140 UNP P05230 FGF1_HUMAN 16 155 SEQADV 3UD7 MET A 0 UNP P05230 EXPRESSION TAG SEQADV 3UD7 MET B 0 UNP P05230 EXPRESSION TAG SEQADV 3UD7 MET C 0 UNP P05230 EXPRESSION TAG SEQRES 1 A 141 MET PHE ASN LEU PRO PRO GLY ASN TYR LYS LYS PRO LYS SEQRES 2 A 141 LEU LEU TYR CYS SER ASN GLY GLY HIS PHE LEU ARG ILE SEQRES 3 A 141 LEU PRO ASP GLY THR VAL ASP GLY THR ARG ASP ARG SER SEQRES 4 A 141 ASP GLN HIS ILE GLN LEU GLN LEU SER ALA GLU SER VAL SEQRES 5 A 141 GLY GLU VAL TYR ILE LYS SER THR GLU THR GLY GLN TYR SEQRES 6 A 141 LEU ALA MET ASP THR ASP GLY LEU LEU TYR GLY SER GLN SEQRES 7 A 141 THR PRO ASN GLU GLU CYS LEU PHE LEU GLU ARG LEU GLU SEQRES 8 A 141 GLU ASN HIS TYR ASN THR TYR ILE SER LYS LYS HIS ALA SEQRES 9 A 141 GLU LYS ASN TRP PHE VAL GLY LEU LYS LYS ASN GLY SER SEQRES 10 A 141 CYS LYS ARG GLY PRO ARG THR HIS TYR GLY GLN LYS ALA SEQRES 11 A 141 ILE LEU PHE LEU PRO LEU PRO VAL SER SER ASP SEQRES 1 B 141 MET PHE ASN LEU PRO PRO GLY ASN TYR LYS LYS PRO LYS SEQRES 2 B 141 LEU LEU TYR CYS SER ASN GLY GLY HIS PHE LEU ARG ILE SEQRES 3 B 141 LEU PRO ASP GLY THR VAL ASP GLY THR ARG ASP ARG SER SEQRES 4 B 141 ASP GLN HIS ILE GLN LEU GLN LEU SER ALA GLU SER VAL SEQRES 5 B 141 GLY GLU VAL TYR ILE LYS SER THR GLU THR GLY GLN TYR SEQRES 6 B 141 LEU ALA MET ASP THR ASP GLY LEU LEU TYR GLY SER GLN SEQRES 7 B 141 THR PRO ASN GLU GLU CYS LEU PHE LEU GLU ARG LEU GLU SEQRES 8 B 141 GLU ASN HIS TYR ASN THR TYR ILE SER LYS LYS HIS ALA SEQRES 9 B 141 GLU LYS ASN TRP PHE VAL GLY LEU LYS LYS ASN GLY SER SEQRES 10 B 141 CYS LYS ARG GLY PRO ARG THR HIS TYR GLY GLN LYS ALA SEQRES 11 B 141 ILE LEU PHE LEU PRO LEU PRO VAL SER SER ASP SEQRES 1 C 141 MET PHE ASN LEU PRO PRO GLY ASN TYR LYS LYS PRO LYS SEQRES 2 C 141 LEU LEU TYR CYS SER ASN GLY GLY HIS PHE LEU ARG ILE SEQRES 3 C 141 LEU PRO ASP GLY THR VAL ASP GLY THR ARG ASP ARG SER SEQRES 4 C 141 ASP GLN HIS ILE GLN LEU GLN LEU SER ALA GLU SER VAL SEQRES 5 C 141 GLY GLU VAL TYR ILE LYS SER THR GLU THR GLY GLN TYR SEQRES 6 C 141 LEU ALA MET ASP THR ASP GLY LEU LEU TYR GLY SER GLN SEQRES 7 C 141 THR PRO ASN GLU GLU CYS LEU PHE LEU GLU ARG LEU GLU SEQRES 8 C 141 GLU ASN HIS TYR ASN THR TYR ILE SER LYS LYS HIS ALA SEQRES 9 C 141 GLU LYS ASN TRP PHE VAL GLY LEU LYS LYS ASN GLY SER SEQRES 10 C 141 CYS LYS ARG GLY PRO ARG THR HIS TYR GLY GLN LYS ALA SEQRES 11 C 141 ILE LEU PHE LEU PRO LEU PRO VAL SER SER ASP HET IDY D 1 18 HET GNS D 2 15 HET PO4 A 141 5 HET PO4 A 142 5 HET PO4 A 143 5 HET PO4 B 141 5 HET PO4 C 141 5 HET PO4 C 142 5 HETNAM IDY 1-O-METHYL-2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM GNS 2-DEOXY-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN IDY METHYL 2-O-SULFO-ALPHA-L-IDOPYRANOSIDURONIC ACID; 1-O- HETSYN 2 IDY METHYL-2-O-SULFO-ALPHA-L-IDURONIC ACID; 1-O-METHYL-2- HETSYN 3 IDY O-SULFO-L-IDURONIC ACID; 1-O-METHYL-2-O-SULFO-IDURONIC HETSYN 4 IDY ACID HETSYN GNS N-SULFO-ALPHA-D-GLUCOSAMINE; 2-DEOXY-2-(SULFOAMINO)- HETSYN 2 GNS ALPHA-D-GLUCOSE; 2-DEOXY-2-(SULFOAMINO)-D-GLUCOSE; 2- HETSYN 3 GNS DEOXY-2-(SULFOAMINO)-GLUCOSE FORMUL 4 IDY C7 H12 O10 S FORMUL 4 GNS C6 H13 N O8 S FORMUL 5 PO4 6(O4 P 3-) FORMUL 11 HOH *26(H2 O) HELIX 1 1 ASP A 39 ILE A 42 5 4 HELIX 2 2 ASN A 80 CYS A 83 5 4 HELIX 3 3 LYS A 101 ALA A 103 5 3 HELIX 4 4 ASN B 80 CYS B 83 5 4 HELIX 5 5 HIS B 102 ASN B 106 5 5 HELIX 6 6 ARG B 119 THR B 123 5 5 HELIX 7 7 GLN B 127 ILE B 130 5 4 HELIX 8 8 ASP C 39 ILE C 42 5 4 HELIX 9 9 ASN C 80 CYS C 83 5 4 HELIX 10 10 LYS C 101 ASN C 106 5 6 HELIX 11 11 ARG C 119 THR C 123 5 5 HELIX 12 12 GLN C 127 ILE C 130 5 4 SHEET 1 A 4 VAL A 31 THR A 34 0 SHEET 2 A 4 HIS A 21 ILE A 25 -1 N PHE A 22 O THR A 34 SHEET 3 A 4 LYS A 12 CYS A 16 -1 N CYS A 16 O HIS A 21 SHEET 4 A 4 PHE A 132 PRO A 136 -1 O LEU A 135 N LEU A 13 SHEET 1 B 4 LEU A 44 ALA A 48 0 SHEET 2 B 4 GLU A 53 SER A 58 -1 O LYS A 57 N GLN A 45 SHEET 3 B 4 PHE A 85 LEU A 89 -1 O PHE A 85 N VAL A 54 SHEET 4 B 4 ASN A 95 SER A 99 -1 O ILE A 98 N LEU A 86 SHEET 1 C 2 TYR A 64 MET A 67 0 SHEET 2 C 2 LEU A 73 SER A 76 -1 O SER A 76 N TYR A 64 SHEET 1 D 2 LYS B 12 CYS B 16 0 SHEET 2 D 2 PHE B 132 PRO B 136 -1 O LEU B 135 N LEU B 13 SHEET 1 E 2 PHE B 22 ILE B 25 0 SHEET 2 E 2 VAL B 31 THR B 34 -1 O THR B 34 N PHE B 22 SHEET 1 F 4 LEU B 44 SER B 50 0 SHEET 2 F 4 GLU B 53 SER B 58 -1 O LYS B 57 N GLN B 45 SHEET 3 F 4 PHE B 85 LEU B 89 -1 O PHE B 85 N VAL B 54 SHEET 4 F 4 ASN B 95 SER B 99 -1 O ILE B 98 N LEU B 86 SHEET 1 G 2 TYR B 64 MET B 67 0 SHEET 2 G 2 LEU B 73 SER B 76 -1 O SER B 76 N TYR B 64 SHEET 1 H 2 GLY B 110 LEU B 111 0 SHEET 2 H 2 CYS B 117 LYS B 118 -1 O LYS B 118 N GLY B 110 SHEET 1 I 2 TYR C 15 CYS C 16 0 SHEET 2 I 2 PHE C 132 LEU C 133 -1 O LEU C 133 N TYR C 15 SHEET 1 J 2 PHE C 22 ILE C 25 0 SHEET 2 J 2 VAL C 31 THR C 34 -1 O THR C 34 N PHE C 22 SHEET 1 K 4 LEU C 44 SER C 50 0 SHEET 2 K 4 GLU C 53 SER C 58 -1 O GLU C 53 N SER C 50 SHEET 3 K 4 PHE C 85 LEU C 89 -1 O PHE C 85 N VAL C 54 SHEET 4 K 4 ASN C 95 SER C 99 -1 O ILE C 98 N LEU C 86 SHEET 1 L 2 TYR C 64 MET C 67 0 SHEET 2 L 2 LEU C 73 SER C 76 -1 O SER C 76 N TYR C 64 LINK O4 IDY D 1 C1 GNS D 2 1555 1555 1.41 CISPEP 1 GLU B 91 ASN B 92 0 -14.81 CISPEP 2 GLU C 91 ASN C 92 0 24.86 CRYST1 115.149 47.077 98.874 90.00 125.32 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008684 0.000000 0.006154 0.00000 SCALE2 0.000000 0.021242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012396 0.00000