data_3UDV
#
_entry.id 3UDV
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.379
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3UDV pdb_00003udv 10.2210/pdb3udv/pdb
RCSB RCSB068630 ? ?
WWPDB D_1000068630 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3UD5 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A' unspecified
PDB 3UDE 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1B' unspecified
#
_pdbx_database_status.entry_id 3UDV
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2011-10-28
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Shaw, G.' 1 ?
'Shi, G.' 2 ?
'Ji, X.' 3 0000-0001-6942-1514
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary
'Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.'
Bioorg.Med.Chem. 20 47 57 2012 BMECEP UK 0968-0896 1200 ? 22169600 10.1016/j.bmc.2011.11.032
1
;Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: synthesis and biochemical and crystallographic studies.
;
J.Med.Chem. 44 1364 1371 2001 JMCMAR US 0022-2623 0151 ? 11311059 ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Shi, G.' 1 ?
primary 'Shaw, G.' 2 ?
primary 'Liang, Y.H.' 3 ?
primary 'Subburaman, P.' 4 ?
primary 'Li, Y.' 5 ?
primary 'Wu, Y.' 6 ?
primary 'Yan, H.' 7 ?
primary 'Ji, X.' 8 0000-0001-6942-1514
1 'Shi, G.' 9 ?
1 'Blaszczyk, J.' 10 ?
1 'Ji, X.' 11 ?
1 'Yan, H.' 12 ?
#
_cell.length_a 53.00
_cell.length_b 70.64
_cell.length_c 36.25
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.entry_id 3UDV
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.space_group_name_H-M 'P 21 21 2'
_symmetry.entry_id 3UDV
_symmetry.Int_Tables_number 18
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man '2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase' 17966.535 1 2.7.6.3 ? ? ?
2 non-polymer syn
"5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"
628.706 1 ? ? ? ?
3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ?
4 water nat water 18.015 91 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name
'6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, PPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_seq_one_letter_code_can
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 THR n
1 2 VAL n
1 3 ALA n
1 4 TYR n
1 5 ILE n
1 6 ALA n
1 7 ILE n
1 8 GLY n
1 9 SER n
1 10 ASN n
1 11 LEU n
1 12 ALA n
1 13 SER n
1 14 PRO n
1 15 LEU n
1 16 GLU n
1 17 GLN n
1 18 VAL n
1 19 ASN n
1 20 ALA n
1 21 ALA n
1 22 LEU n
1 23 LYS n
1 24 ALA n
1 25 LEU n
1 26 GLY n
1 27 ASP n
1 28 ILE n
1 29 PRO n
1 30 GLU n
1 31 SER n
1 32 HIS n
1 33 ILE n
1 34 LEU n
1 35 THR n
1 36 VAL n
1 37 SER n
1 38 SER n
1 39 PHE n
1 40 TYR n
1 41 ARG n
1 42 THR n
1 43 PRO n
1 44 PRO n
1 45 LEU n
1 46 GLY n
1 47 PRO n
1 48 GLN n
1 49 ASP n
1 50 GLN n
1 51 PRO n
1 52 ASP n
1 53 TYR n
1 54 LEU n
1 55 ASN n
1 56 ALA n
1 57 ALA n
1 58 VAL n
1 59 ALA n
1 60 LEU n
1 61 GLU n
1 62 THR n
1 63 SER n
1 64 LEU n
1 65 ALA n
1 66 PRO n
1 67 GLU n
1 68 GLU n
1 69 LEU n
1 70 LEU n
1 71 ASN n
1 72 HIS n
1 73 THR n
1 74 GLN n
1 75 ARG n
1 76 ILE n
1 77 GLU n
1 78 LEU n
1 79 GLN n
1 80 GLN n
1 81 GLY n
1 82 ARG n
1 83 VAL n
1 84 ARG n
1 85 LYS n
1 86 ALA n
1 87 GLU n
1 88 ARG n
1 89 TRP n
1 90 GLY n
1 91 PRO n
1 92 ARG n
1 93 THR n
1 94 LEU n
1 95 ASP n
1 96 LEU n
1 97 ASP n
1 98 ILE n
1 99 MET n
1 100 LEU n
1 101 PHE n
1 102 GLY n
1 103 ASN n
1 104 GLU n
1 105 VAL n
1 106 ILE n
1 107 ASN n
1 108 THR n
1 109 GLU n
1 110 ARG n
1 111 LEU n
1 112 THR n
1 113 VAL n
1 114 PRO n
1 115 HIS n
1 116 TYR n
1 117 ASP n
1 118 MET n
1 119 LYS n
1 120 ASN n
1 121 ARG n
1 122 GLY n
1 123 PHE n
1 124 MET n
1 125 LEU n
1 126 TRP n
1 127 PRO n
1 128 LEU n
1 129 PHE n
1 130 GLU n
1 131 ILE n
1 132 ALA n
1 133 PRO n
1 134 GLU n
1 135 LEU n
1 136 VAL n
1 137 PHE n
1 138 PRO n
1 139 ASP n
1 140 GLY n
1 141 GLU n
1 142 MET n
1 143 LEU n
1 144 ARG n
1 145 GLN n
1 146 ILE n
1 147 LEU n
1 148 HIS n
1 149 THR n
1 150 ARG n
1 151 ALA n
1 152 PHE n
1 153 ASP n
1 154 LYS n
1 155 LEU n
1 156 ASN n
1 157 LYS n
1 158 TRP n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name ?
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'b0142, foIK, folK, JW0138'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain K12
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21(DE3)'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pET17b
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code HPPK_ECOLI
_struct_ref.pdbx_db_accession P26281
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ
GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW
;
_struct_ref.pdbx_align_begin 2
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3UDV
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 158
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P26281
_struct_ref_seq.db_align_beg 2
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 159
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 158
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
J1C non-polymer .
"5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" ?
'C26 H36 N12 O5 S' 628.706
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.crystals_number 1
_exptl.entry_id 3UDV
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.89
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 34.87
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.pH 7.5
_exptl_crystal_grow.temp 292
_exptl_crystal_grow.pdbx_details 'PEG 3350, ammonium acetate, Bis-Tris, pH 7.5, vapor diffusion, sitting drop, temperature 292K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'MARMOSAIC 300 mm CCD'
_diffrn_detector.pdbx_collection_date 2010-02-13
_diffrn_detector.details mirrors
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator GRAPHITE
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.00000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'APS BEAMLINE 22-ID'
_diffrn_source.pdbx_wavelength_list 1.00000
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site APS
_diffrn_source.pdbx_synchrotron_beamline 22-ID
#
_reflns.entry_id 3UDV
_reflns.d_resolution_high 1.790
_reflns.d_resolution_low 30.000
_reflns.number_obs 11716
_reflns.pdbx_Rmerge_I_obs 0.074
_reflns.pdbx_netI_over_sigmaI 11.800
_reflns.pdbx_chi_squared 0.981
_reflns.pdbx_redundancy 6.000
_reflns.percent_possible_obs 87.600
_reflns.observed_criterion_sigma_F -6
_reflns.observed_criterion_sigma_I -3
_reflns.number_all 11716
_reflns.pdbx_Rsym_value ?
_reflns.B_iso_Wilson_estimate ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.number_measured_obs
_reflns_shell.number_measured_all
_reflns_shell.number_unique_obs
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_redundancy
_reflns_shell.percent_possible_obs
_reflns_shell.number_unique_all
_reflns_shell.percent_possible_all
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
1.790 1.850 ? ? ? 0.322 ? ? 0.967 2.800 ? 658 50.400 1 1
1.850 1.930 ? ? ? 0.327 ? ? 0.955 3.700 ? 864 66.000 2 1
1.930 2.020 ? ? ? 0.288 ? ? 0.976 4.700 ? 1027 78.100 3 1
2.020 2.120 ? ? ? 0.245 ? ? 0.959 5.600 ? 1174 89.100 4 1
2.120 2.260 ? ? ? 0.212 ? ? 1.042 6.200 ? 1229 94.200 5 1
2.260 2.430 ? ? ? 0.160 ? ? 0.975 6.600 ? 1284 96.500 6 1
2.430 2.670 ? ? ? 0.139 ? ? 0.971 7.100 ? 1314 99.800 7 1
2.670 3.060 ? ? ? 0.095 ? ? 0.999 7.200 ? 1354 100.000 8 1
3.060 3.850 ? ? ? 0.050 ? ? 0.981 7.100 ? 1355 100.000 9 1
3.850 30.000 ? ? ? 0.035 ? ? 0.959 6.600 ? 1457 99.900 10 1
#
_refine.entry_id 3UDV
_refine.ls_d_res_high 1.8800
_refine.ls_d_res_low 29.9210
_refine.pdbx_ls_sigma_F 1.340
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 92.7800
_refine.ls_number_reflns_obs 10754
_refine.ls_number_reflns_all 10754
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_R_Free_selection_details Random
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2155
_refine.ls_R_factor_R_work 0.2099
_refine.ls_wR_factor_R_work ?
_refine.ls_R_factor_R_free 0.2749
_refine.ls_wR_factor_R_free ?
_refine.ls_percent_reflns_R_free 8.5500
_refine.ls_number_reflns_R_free 920
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 27.3913
_refine.solvent_model_param_bsol 41.3710
_refine.solvent_model_param_ksol 0.3820
_refine.pdbx_isotropic_thermal_model Isotropic
_refine.aniso_B[1][1] 0.0000
_refine.aniso_B[2][2] 0.0000
_refine.aniso_B[3][3] 0.0000
_refine.aniso_B[1][2] 0.0000
_refine.aniso_B[1][3] 0.0000
_refine.aniso_B[2][3] 0.0000
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.4800
_refine.overall_SU_B ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model 'PDB Entry 3UDE'
_refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS'
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set ?
_refine.B_iso_max 87.680
_refine.B_iso_min 5.180
_refine.pdbx_overall_phase_error 28.5400
_refine.occupancy_max 1.000
_refine.occupancy_min 0.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1235
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 48
_refine_hist.number_atoms_solvent 91
_refine_hist.number_atoms_total 1374
_refine_hist.d_res_high 1.8800
_refine_hist.d_res_low 29.9210
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 1365 0.013 ? ? ? 'X-RAY DIFFRACTION'
f_angle_d 1876 1.376 ? ? ? 'X-RAY DIFFRACTION'
f_chiral_restr 208 0.087 ? ? ? 'X-RAY DIFFRACTION'
f_plane_restr 242 0.008 ? ? ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 531 14.998 ? ? ? 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.pdbx_refine_id
1.8800 1.9791 7 72.0000 1052 . 0.2528 0.2881 . 98 . 1150 1150 . 'X-RAY DIFFRACTION'
1.9791 2.1031 7 86.0000 1265 . 0.2630 0.3664 . 119 . 1384 1384 . 'X-RAY DIFFRACTION'
2.1031 2.2654 7 94.0000 1413 . 0.2565 0.3442 . 131 . 1544 1544 . 'X-RAY DIFFRACTION'
2.2654 2.4933 7 97.0000 1450 . 0.2263 0.2976 . 136 . 1586 1586 . 'X-RAY DIFFRACTION'
2.4933 2.8538 7 100.0000 1496 . 0.2063 0.2929 . 140 . 1636 1636 . 'X-RAY DIFFRACTION'
2.8538 3.5945 7 100.0000 1547 . 0.1873 0.2601 . 145 . 1692 1692 . 'X-RAY DIFFRACTION'
3.5945 29.9246 7 100.0000 1611 . 0.1926 0.2331 . 151 . 1762 1762 . 'X-RAY DIFFRACTION'
#
_struct.entry_id 3UDV
_struct.title 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1C'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3UDV
_struct_keywords.text
'Alpha Beta, Kinase, ATP Binding, Pyrophosphoryl Transfer, TRANSFERASE-TRANSFERASE INHIBITOR complex'
_struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 PRO A 14 ? ILE A 28 ? PRO A 14 ILE A 28 1 ? 15
HELX_P HELX_P2 2 ALA A 65 ? GLY A 81 ? ALA A 65 GLY A 81 1 ? 17
HELX_P HELX_P3 3 ASP A 117 ? ASN A 120 ? ASP A 117 ASN A 120 5 ? 4
HELX_P HELX_P4 4 ARG A 121 ? ALA A 132 ? ARG A 121 ALA A 132 1 ? 12
HELX_P HELX_P5 5 MET A 142 ? ALA A 151 ? MET A 142 ALA A 151 1 ? 10
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GLY 90 A . ? GLY 90 A PRO 91 A ? PRO 91 A 1 0.75
2 VAL 113 A . ? VAL 113 A PRO 114 A ? PRO 114 A 1 -8.61
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 4 ?
B ? 4 ?
C ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
C 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
A 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
A 3 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9
A 4 ASP A 95 ? PHE A 101 ? ASP A 95 PHE A 101
B 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36
B 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62
B 3 TYR A 40 ? THR A 42 ? TYR A 40 THR A 42
B 4 ASN A 156 ? LYS A 157 ? ASN A 156 LYS A 157
C 1 ILE A 106 ? ASN A 107 ? ILE A 106 ASN A 107
C 2 THR A 112 ? VAL A 113 ? THR A 112 VAL A 113
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
A 2 3 O LEU A 60 ? O LEU A 60 N ALA A 3 ? N ALA A 3
A 3 4 N ALA A 6 ? N ALA A 6 O ASP A 97 ? O ASP A 97
B 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59
B 2 3 O TYR A 53 ? O TYR A 53 N THR A 42 ? N THR A 42
B 3 4 N ARG A 41 ? N ARG A 41 O ASN A 156 ? O ASN A 156
C 1 2 N ILE A 106 ? N ILE A 106 O VAL A 113 ? O VAL A 113
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A J1C 171 ? 23 'BINDING SITE FOR RESIDUE J1C A 171'
AC2 Software A ACT 191 ? 7 'BINDING SITE FOR RESIDUE ACT A 191'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 23 LYS A 23 ? LYS A 23 . ? 4_456 ?
2 AC1 23 THR A 42 ? THR A 42 . ? 1_555 ?
3 AC1 23 PRO A 43 ? PRO A 43 . ? 1_555 ?
4 AC1 23 LEU A 45 ? LEU A 45 . ? 1_555 ?
5 AC1 23 TYR A 53 ? TYR A 53 . ? 1_555 ?
6 AC1 23 ASN A 55 ? ASN A 55 . ? 1_555 ?
7 AC1 23 GLN A 74 ? GLN A 74 . ? 1_555 ?
8 AC1 23 GLU A 77 ? GLU A 77 . ? 1_555 ?
9 AC1 23 ARG A 88 ? ARG A 88 . ? 1_555 ?
10 AC1 23 TRP A 89 ? TRP A 89 . ? 1_555 ?
11 AC1 23 GLY A 90 ? GLY A 90 . ? 1_555 ?
12 AC1 23 ARG A 92 ? ARG A 92 . ? 1_555 ?
13 AC1 23 ASP A 95 ? ASP A 95 . ? 1_555 ?
14 AC1 23 ASP A 97 ? ASP A 97 . ? 1_555 ?
15 AC1 23 ILE A 98 ? ILE A 98 . ? 1_555 ?
16 AC1 23 ARG A 110 ? ARG A 110 . ? 1_555 ?
17 AC1 23 THR A 112 ? THR A 112 . ? 1_555 ?
18 AC1 23 PHE A 123 ? PHE A 123 . ? 1_555 ?
19 AC1 23 ACT C . ? ACT A 191 . ? 1_555 ?
20 AC1 23 HOH D . ? HOH A 232 . ? 1_555 ?
21 AC1 23 HOH D . ? HOH A 254 . ? 1_556 ?
22 AC1 23 HOH D . ? HOH A 255 . ? 1_555 ?
23 AC1 23 HOH D . ? HOH A 263 . ? 1_555 ?
24 AC2 7 ALA A 6 ? ALA A 6 . ? 1_555 ?
25 AC2 7 GLY A 8 ? GLY A 8 . ? 1_555 ?
26 AC2 7 ASN A 55 ? ASN A 55 . ? 1_555 ?
27 AC2 7 ASP A 97 ? ASP A 97 . ? 1_555 ?
28 AC2 7 MET A 124 ? MET A 124 . ? 1_555 ?
29 AC2 7 J1C B . ? J1C A 171 . ? 1_555 ?
30 AC2 7 HOH D . ? HOH A 227 . ? 1_555 ?
#
_database_PDB_matrix.entry_id 3UDV
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.000000
_database_PDB_matrix.origx_vector[2] 0.000000
_database_PDB_matrix.origx_vector[3] 0.000000
#
_atom_sites.entry_id 3UDV
_atom_sites.fract_transf_matrix[1][1] 0.018867
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.014156
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.027587
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 THR 1 1 1 THR THR A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 ALA 3 3 3 ALA ALA A . n
A 1 4 TYR 4 4 4 TYR TYR A . n
A 1 5 ILE 5 5 5 ILE ILE A . n
A 1 6 ALA 6 6 6 ALA ALA A . n
A 1 7 ILE 7 7 7 ILE ILE A . n
A 1 8 GLY 8 8 8 GLY GLY A . n
A 1 9 SER 9 9 9 SER SER A . n
A 1 10 ASN 10 10 10 ASN ASN A . n
A 1 11 LEU 11 11 11 LEU LEU A . n
A 1 12 ALA 12 12 12 ALA ALA A . n
A 1 13 SER 13 13 13 SER SER A . n
A 1 14 PRO 14 14 14 PRO PRO A . n
A 1 15 LEU 15 15 15 LEU LEU A . n
A 1 16 GLU 16 16 16 GLU GLU A . n
A 1 17 GLN 17 17 17 GLN GLN A . n
A 1 18 VAL 18 18 18 VAL VAL A . n
A 1 19 ASN 19 19 19 ASN ASN A . n
A 1 20 ALA 20 20 20 ALA ALA A . n
A 1 21 ALA 21 21 21 ALA ALA A . n
A 1 22 LEU 22 22 22 LEU LEU A . n
A 1 23 LYS 23 23 23 LYS LYS A . n
A 1 24 ALA 24 24 24 ALA ALA A . n
A 1 25 LEU 25 25 25 LEU LEU A . n
A 1 26 GLY 26 26 26 GLY GLY A . n
A 1 27 ASP 27 27 27 ASP ASP A . n
A 1 28 ILE 28 28 28 ILE ILE A . n
A 1 29 PRO 29 29 29 PRO PRO A . n
A 1 30 GLU 30 30 30 GLU GLU A . n
A 1 31 SER 31 31 31 SER SER A . n
A 1 32 HIS 32 32 32 HIS HIS A . n
A 1 33 ILE 33 33 33 ILE ILE A . n
A 1 34 LEU 34 34 34 LEU LEU A . n
A 1 35 THR 35 35 35 THR THR A . n
A 1 36 VAL 36 36 36 VAL VAL A . n
A 1 37 SER 37 37 37 SER SER A . n
A 1 38 SER 38 38 38 SER SER A . n
A 1 39 PHE 39 39 39 PHE PHE A . n
A 1 40 TYR 40 40 40 TYR TYR A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 THR 42 42 42 THR THR A . n
A 1 43 PRO 43 43 43 PRO PRO A . n
A 1 44 PRO 44 44 44 PRO PRO A . n
A 1 45 LEU 45 45 45 LEU LEU A . n
A 1 46 GLY 46 46 46 GLY GLY A . n
A 1 47 PRO 47 47 47 PRO PRO A . n
A 1 48 GLN 48 48 48 GLN GLN A . n
A 1 49 ASP 49 49 49 ASP ASP A . n
A 1 50 GLN 50 50 50 GLN GLN A . n
A 1 51 PRO 51 51 51 PRO PRO A . n
A 1 52 ASP 52 52 52 ASP ASP A . n
A 1 53 TYR 53 53 53 TYR TYR A . n
A 1 54 LEU 54 54 54 LEU LEU A . n
A 1 55 ASN 55 55 55 ASN ASN A . n
A 1 56 ALA 56 56 56 ALA ALA A . n
A 1 57 ALA 57 57 57 ALA ALA A . n
A 1 58 VAL 58 58 58 VAL VAL A . n
A 1 59 ALA 59 59 59 ALA ALA A . n
A 1 60 LEU 60 60 60 LEU LEU A . n
A 1 61 GLU 61 61 61 GLU GLU A . n
A 1 62 THR 62 62 62 THR THR A . n
A 1 63 SER 63 63 63 SER SER A . n
A 1 64 LEU 64 64 64 LEU LEU A . n
A 1 65 ALA 65 65 65 ALA ALA A . n
A 1 66 PRO 66 66 66 PRO PRO A . n
A 1 67 GLU 67 67 67 GLU GLU A . n
A 1 68 GLU 68 68 68 GLU GLU A . n
A 1 69 LEU 69 69 69 LEU LEU A . n
A 1 70 LEU 70 70 70 LEU LEU A . n
A 1 71 ASN 71 71 71 ASN ASN A . n
A 1 72 HIS 72 72 72 HIS HIS A . n
A 1 73 THR 73 73 73 THR THR A . n
A 1 74 GLN 74 74 74 GLN GLN A . n
A 1 75 ARG 75 75 75 ARG ARG A . n
A 1 76 ILE 76 76 76 ILE ILE A . n
A 1 77 GLU 77 77 77 GLU GLU A . n
A 1 78 LEU 78 78 78 LEU LEU A . n
A 1 79 GLN 79 79 79 GLN GLN A . n
A 1 80 GLN 80 80 80 GLN GLN A . n
A 1 81 GLY 81 81 81 GLY GLY A . n
A 1 82 ARG 82 82 82 ARG ARG A . n
A 1 83 VAL 83 83 ? ? ? A . n
A 1 84 ARG 84 84 ? ? ? A . n
A 1 85 LYS 85 85 ? ? ? A . n
A 1 86 ALA 86 86 ? ? ? A . n
A 1 87 GLU 87 87 87 GLU GLU A . n
A 1 88 ARG 88 88 88 ARG ARG A . n
A 1 89 TRP 89 89 89 TRP TRP A . n
A 1 90 GLY 90 90 90 GLY GLY A . n
A 1 91 PRO 91 91 91 PRO PRO A . n
A 1 92 ARG 92 92 92 ARG ARG A . n
A 1 93 THR 93 93 93 THR THR A . n
A 1 94 LEU 94 94 94 LEU LEU A . n
A 1 95 ASP 95 95 95 ASP ASP A . n
A 1 96 LEU 96 96 96 LEU LEU A . n
A 1 97 ASP 97 97 97 ASP ASP A . n
A 1 98 ILE 98 98 98 ILE ILE A . n
A 1 99 MET 99 99 99 MET MET A . n
A 1 100 LEU 100 100 100 LEU LEU A . n
A 1 101 PHE 101 101 101 PHE PHE A . n
A 1 102 GLY 102 102 102 GLY GLY A . n
A 1 103 ASN 103 103 103 ASN ASN A . n
A 1 104 GLU 104 104 104 GLU GLU A . n
A 1 105 VAL 105 105 105 VAL VAL A . n
A 1 106 ILE 106 106 106 ILE ILE A . n
A 1 107 ASN 107 107 107 ASN ASN A . n
A 1 108 THR 108 108 108 THR THR A . n
A 1 109 GLU 109 109 109 GLU GLU A . n
A 1 110 ARG 110 110 110 ARG ARG A . n
A 1 111 LEU 111 111 111 LEU LEU A . n
A 1 112 THR 112 112 112 THR THR A . n
A 1 113 VAL 113 113 113 VAL VAL A . n
A 1 114 PRO 114 114 114 PRO PRO A . n
A 1 115 HIS 115 115 115 HIS HIS A . n
A 1 116 TYR 116 116 116 TYR TYR A . n
A 1 117 ASP 117 117 117 ASP ASP A . n
A 1 118 MET 118 118 118 MET MET A . n
A 1 119 LYS 119 119 119 LYS LYS A . n
A 1 120 ASN 120 120 120 ASN ASN A . n
A 1 121 ARG 121 121 121 ARG ARG A . n
A 1 122 GLY 122 122 122 GLY GLY A . n
A 1 123 PHE 123 123 123 PHE PHE A . n
A 1 124 MET 124 124 124 MET MET A . n
A 1 125 LEU 125 125 125 LEU LEU A . n
A 1 126 TRP 126 126 126 TRP TRP A . n
A 1 127 PRO 127 127 127 PRO PRO A . n
A 1 128 LEU 128 128 128 LEU LEU A . n
A 1 129 PHE 129 129 129 PHE PHE A . n
A 1 130 GLU 130 130 130 GLU GLU A . n
A 1 131 ILE 131 131 131 ILE ILE A . n
A 1 132 ALA 132 132 132 ALA ALA A . n
A 1 133 PRO 133 133 133 PRO PRO A . n
A 1 134 GLU 134 134 134 GLU GLU A . n
A 1 135 LEU 135 135 135 LEU LEU A . n
A 1 136 VAL 136 136 136 VAL VAL A . n
A 1 137 PHE 137 137 137 PHE PHE A . n
A 1 138 PRO 138 138 138 PRO PRO A . n
A 1 139 ASP 139 139 139 ASP ASP A . n
A 1 140 GLY 140 140 140 GLY GLY A . n
A 1 141 GLU 141 141 141 GLU GLU A . n
A 1 142 MET 142 142 142 MET MET A . n
A 1 143 LEU 143 143 143 LEU LEU A . n
A 1 144 ARG 144 144 144 ARG ARG A . n
A 1 145 GLN 145 145 145 GLN GLN A . n
A 1 146 ILE 146 146 146 ILE ILE A . n
A 1 147 LEU 147 147 147 LEU LEU A . n
A 1 148 HIS 148 148 148 HIS HIS A . n
A 1 149 THR 149 149 149 THR THR A . n
A 1 150 ARG 150 150 150 ARG ARG A . n
A 1 151 ALA 151 151 151 ALA ALA A . n
A 1 152 PHE 152 152 152 PHE PHE A . n
A 1 153 ASP 153 153 153 ASP ASP A . n
A 1 154 LYS 154 154 154 LYS LYS A . n
A 1 155 LEU 155 155 155 LEU LEU A . n
A 1 156 ASN 156 156 156 ASN ASN A . n
A 1 157 LYS 157 157 157 LYS LYS A . n
A 1 158 TRP 158 158 158 TRP TRP A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 J1C 1 171 171 J1C J1C A .
C 3 ACT 1 191 191 ACT ACT A .
D 4 HOH 1 201 201 HOH HOH A .
D 4 HOH 2 202 202 HOH HOH A .
D 4 HOH 3 203 203 HOH HOH A .
D 4 HOH 4 204 204 HOH HOH A .
D 4 HOH 5 205 205 HOH HOH A .
D 4 HOH 6 206 206 HOH HOH A .
D 4 HOH 7 207 207 HOH HOH A .
D 4 HOH 8 208 208 HOH HOH A .
D 4 HOH 9 209 209 HOH HOH A .
D 4 HOH 10 210 210 HOH HOH A .
D 4 HOH 11 211 211 HOH HOH A .
D 4 HOH 12 212 212 HOH HOH A .
D 4 HOH 13 213 213 HOH HOH A .
D 4 HOH 14 214 214 HOH HOH A .
D 4 HOH 15 215 215 HOH HOH A .
D 4 HOH 16 216 216 HOH HOH A .
D 4 HOH 17 217 217 HOH HOH A .
D 4 HOH 18 218 218 HOH HOH A .
D 4 HOH 19 219 219 HOH HOH A .
D 4 HOH 20 220 220 HOH HOH A .
D 4 HOH 21 221 221 HOH HOH A .
D 4 HOH 22 222 222 HOH HOH A .
D 4 HOH 23 223 223 HOH HOH A .
D 4 HOH 24 224 224 HOH HOH A .
D 4 HOH 25 225 225 HOH HOH A .
D 4 HOH 26 226 226 HOH HOH A .
D 4 HOH 27 227 227 HOH HOH A .
D 4 HOH 28 228 228 HOH HOH A .
D 4 HOH 29 229 229 HOH HOH A .
D 4 HOH 30 230 230 HOH HOH A .
D 4 HOH 31 231 231 HOH HOH A .
D 4 HOH 32 232 232 HOH HOH A .
D 4 HOH 33 233 233 HOH HOH A .
D 4 HOH 34 234 234 HOH HOH A .
D 4 HOH 35 235 235 HOH HOH A .
D 4 HOH 36 236 236 HOH HOH A .
D 4 HOH 37 237 237 HOH HOH A .
D 4 HOH 38 238 238 HOH HOH A .
D 4 HOH 39 239 239 HOH HOH A .
D 4 HOH 40 240 240 HOH HOH A .
D 4 HOH 41 241 241 HOH HOH A .
D 4 HOH 42 242 242 HOH HOH A .
D 4 HOH 43 243 243 HOH HOH A .
D 4 HOH 44 244 244 HOH HOH A .
D 4 HOH 45 245 245 HOH HOH A .
D 4 HOH 46 246 246 HOH HOH A .
D 4 HOH 47 247 247 HOH HOH A .
D 4 HOH 48 248 248 HOH HOH A .
D 4 HOH 49 249 249 HOH HOH A .
D 4 HOH 50 250 250 HOH HOH A .
D 4 HOH 51 251 251 HOH HOH A .
D 4 HOH 52 252 252 HOH HOH A .
D 4 HOH 53 253 253 HOH HOH A .
D 4 HOH 54 254 254 HOH HOH A .
D 4 HOH 55 255 255 HOH HOH A .
D 4 HOH 56 256 256 HOH HOH A .
D 4 HOH 57 257 257 HOH HOH A .
D 4 HOH 58 258 258 HOH HOH A .
D 4 HOH 59 259 259 HOH HOH A .
D 4 HOH 60 260 260 HOH HOH A .
D 4 HOH 61 261 261 HOH HOH A .
D 4 HOH 62 262 262 HOH HOH A .
D 4 HOH 63 263 263 HOH HOH A .
D 4 HOH 64 264 264 HOH HOH A .
D 4 HOH 65 265 265 HOH HOH A .
D 4 HOH 66 266 266 HOH HOH A .
D 4 HOH 67 267 267 HOH HOH A .
D 4 HOH 68 268 268 HOH HOH A .
D 4 HOH 69 269 269 HOH HOH A .
D 4 HOH 70 270 270 HOH HOH A .
D 4 HOH 71 271 271 HOH HOH A .
D 4 HOH 72 272 272 HOH HOH A .
D 4 HOH 73 273 273 HOH HOH A .
D 4 HOH 74 274 274 HOH HOH A .
D 4 HOH 75 275 275 HOH HOH A .
D 4 HOH 76 276 276 HOH HOH A .
D 4 HOH 77 277 277 HOH HOH A .
D 4 HOH 78 278 278 HOH HOH A .
D 4 HOH 79 279 279 HOH HOH A .
D 4 HOH 80 280 280 HOH HOH A .
D 4 HOH 81 281 281 HOH HOH A .
D 4 HOH 82 282 282 HOH HOH A .
D 4 HOH 83 283 283 HOH HOH A .
D 4 HOH 84 284 284 HOH HOH A .
D 4 HOH 85 285 285 HOH HOH A .
D 4 HOH 86 286 286 HOH HOH A .
D 4 HOH 87 287 287 HOH HOH A .
D 4 HOH 88 288 288 HOH HOH A .
D 4 HOH 89 289 289 HOH HOH A .
D 4 HOH 90 290 290 HOH HOH A .
D 4 HOH 91 291 291 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2012-01-04
2 'Structure model' 1 1 2012-01-18
3 'Structure model' 1 2 2023-08-30
4 'Structure model' 1 3 2023-09-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Structure summary'
6 4 'Structure model' 'Refinement description'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' audit_author
2 3 'Structure model' chem_comp_atom
3 3 'Structure model' chem_comp_bond
4 3 'Structure model' citation_author
5 3 'Structure model' database_2
6 3 'Structure model' struct_site
7 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_audit_author.identifier_ORCID'
2 3 'Structure model' '_citation_author.identifier_ORCID'
3 3 'Structure model' '_database_2.pdbx_DOI'
4 3 'Structure model' '_database_2.pdbx_database_accession'
5 3 'Structure model' '_struct_site.pdbx_auth_asym_id'
6 3 'Structure model' '_struct_site.pdbx_auth_comp_id'
7 3 'Structure model' '_struct_site.pdbx_auth_seq_id'
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
2 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement
http://www.phenix-online.org/ C++ ?
3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction'
http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
4 MAR345dtb . ? ? ? ? 'data collection' ? ? ?
5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ?
6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ?
7 PHENIX . ? ? ? ? phasing ? ? ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 LEU A 45 ? ? -69.05 96.34
2 1 TRP A 89 ? ? -91.08 31.65
3 1 LEU A 94 ? ? -171.73 112.19
4 1 PRO A 114 ? ? -48.00 154.29
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 0 A VAL 2 ? CA B A VAL 2 CA
2 1 Y 0 A VAL 2 ? CB B A VAL 2 CB
3 1 Y 0 A VAL 2 ? CG1 B A VAL 2 CG1
4 1 Y 0 A VAL 2 ? CG2 B A VAL 2 CG2
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A VAL 83 ? A VAL 83
2 1 Y 1 A ARG 84 ? A ARG 84
3 1 Y 1 A LYS 85 ? A LYS 85
4 1 Y 1 A ALA 86 ? A ALA 86
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ACT C C N N 1
ACT O O N N 2
ACT OXT O N N 3
ACT CH3 C N N 4
ACT H1 H N N 5
ACT H2 H N N 6
ACT H3 H N N 7
ALA N N N N 8
ALA CA C N S 9
ALA C C N N 10
ALA O O N N 11
ALA CB C N N 12
ALA OXT O N N 13
ALA H H N N 14
ALA H2 H N N 15
ALA HA H N N 16
ALA HB1 H N N 17
ALA HB2 H N N 18
ALA HB3 H N N 19
ALA HXT H N N 20
ARG N N N N 21
ARG CA C N S 22
ARG C C N N 23
ARG O O N N 24
ARG CB C N N 25
ARG CG C N N 26
ARG CD C N N 27
ARG NE N N N 28
ARG CZ C N N 29
ARG NH1 N N N 30
ARG NH2 N N N 31
ARG OXT O N N 32
ARG H H N N 33
ARG H2 H N N 34
ARG HA H N N 35
ARG HB2 H N N 36
ARG HB3 H N N 37
ARG HG2 H N N 38
ARG HG3 H N N 39
ARG HD2 H N N 40
ARG HD3 H N N 41
ARG HE H N N 42
ARG HH11 H N N 43
ARG HH12 H N N 44
ARG HH21 H N N 45
ARG HH22 H N N 46
ARG HXT H N N 47
ASN N N N N 48
ASN CA C N S 49
ASN C C N N 50
ASN O O N N 51
ASN CB C N N 52
ASN CG C N N 53
ASN OD1 O N N 54
ASN ND2 N N N 55
ASN OXT O N N 56
ASN H H N N 57
ASN H2 H N N 58
ASN HA H N N 59
ASN HB2 H N N 60
ASN HB3 H N N 61
ASN HD21 H N N 62
ASN HD22 H N N 63
ASN HXT H N N 64
ASP N N N N 65
ASP CA C N S 66
ASP C C N N 67
ASP O O N N 68
ASP CB C N N 69
ASP CG C N N 70
ASP OD1 O N N 71
ASP OD2 O N N 72
ASP OXT O N N 73
ASP H H N N 74
ASP H2 H N N 75
ASP HA H N N 76
ASP HB2 H N N 77
ASP HB3 H N N 78
ASP HD2 H N N 79
ASP HXT H N N 80
GLN N N N N 81
GLN CA C N S 82
GLN C C N N 83
GLN O O N N 84
GLN CB C N N 85
GLN CG C N N 86
GLN CD C N N 87
GLN OE1 O N N 88
GLN NE2 N N N 89
GLN OXT O N N 90
GLN H H N N 91
GLN H2 H N N 92
GLN HA H N N 93
GLN HB2 H N N 94
GLN HB3 H N N 95
GLN HG2 H N N 96
GLN HG3 H N N 97
GLN HE21 H N N 98
GLN HE22 H N N 99
GLN HXT H N N 100
GLU N N N N 101
GLU CA C N S 102
GLU C C N N 103
GLU O O N N 104
GLU CB C N N 105
GLU CG C N N 106
GLU CD C N N 107
GLU OE1 O N N 108
GLU OE2 O N N 109
GLU OXT O N N 110
GLU H H N N 111
GLU H2 H N N 112
GLU HA H N N 113
GLU HB2 H N N 114
GLU HB3 H N N 115
GLU HG2 H N N 116
GLU HG3 H N N 117
GLU HE2 H N N 118
GLU HXT H N N 119
GLY N N N N 120
GLY CA C N N 121
GLY C C N N 122
GLY O O N N 123
GLY OXT O N N 124
GLY H H N N 125
GLY H2 H N N 126
GLY HA2 H N N 127
GLY HA3 H N N 128
GLY HXT H N N 129
HIS N N N N 130
HIS CA C N S 131
HIS C C N N 132
HIS O O N N 133
HIS CB C N N 134
HIS CG C Y N 135
HIS ND1 N Y N 136
HIS CD2 C Y N 137
HIS CE1 C Y N 138
HIS NE2 N Y N 139
HIS OXT O N N 140
HIS H H N N 141
HIS H2 H N N 142
HIS HA H N N 143
HIS HB2 H N N 144
HIS HB3 H N N 145
HIS HD1 H N N 146
HIS HD2 H N N 147
HIS HE1 H N N 148
HIS HE2 H N N 149
HIS HXT H N N 150
HOH O O N N 151
HOH H1 H N N 152
HOH H2 H N N 153
ILE N N N N 154
ILE CA C N S 155
ILE C C N N 156
ILE O O N N 157
ILE CB C N S 158
ILE CG1 C N N 159
ILE CG2 C N N 160
ILE CD1 C N N 161
ILE OXT O N N 162
ILE H H N N 163
ILE H2 H N N 164
ILE HA H N N 165
ILE HB H N N 166
ILE HG12 H N N 167
ILE HG13 H N N 168
ILE HG21 H N N 169
ILE HG22 H N N 170
ILE HG23 H N N 171
ILE HD11 H N N 172
ILE HD12 H N N 173
ILE HD13 H N N 174
ILE HXT H N N 175
J1C C1 C N S 176
J1C N1 N Y N 177
J1C O1 O N N 178
J1C S1 S N N 179
J1C C2 C N S 180
J1C N2 N Y N 181
J1C O2 O N N 182
J1C C3 C N R 183
J1C N3 N N N 184
J1C O3 O N N 185
J1C C4 C N R 186
J1C N4 N Y N 187
J1C O4 O N N 188
J1C C5 C Y N 189
J1C N5 N Y N 190
J1C O5 O N N 191
J1C C6 C Y N 192
J1C N6 N N N 193
J1C C7 C Y N 194
J1C C8 C Y N 195
J1C N8 N N N 196
J1C C9 C Y N 197
J1C N9 N N N 198
J1C C10 C N N 199
J1C N10 N N N 200
J1C C11 C N N 201
J1C N11 N N N 202
J1C C12 C N N 203
J1C N12 N N N 204
J1C C13 C N N 205
J1C C14 C N N 206
J1C C15 C N N 207
J1C C16 C N N 208
J1C C18 C N N 209
J1C C19 C N N 210
J1C C20 C N N 211
J1C C21 C N N 212
J1C C22 C N N 213
J1C C23 C N N 214
J1C C24 C N N 215
J1C C25 C N N 216
J1C C26 C N N 217
J1C C27 C N N 218
J1C N28 N N N 219
J1C H1 H N N 220
J1C H2 H N N 221
J1C HO2 H N N 222
J1C H3 H N N 223
J1C HN3 H N N 224
J1C HN3A H N N 225
J1C HO3 H N N 226
J1C H4 H N N 227
J1C H5 H N N 228
J1C H8 H N N 229
J1C HN9 H N N 230
J1C HN9A H N N 231
J1C H10 H N N 232
J1C H10A H N N 233
J1C HN10 H N N 234
J1C H11 H N N 235
J1C H12 H N N 236
J1C H12A H N N 237
J1C HN12 H N N 238
J1C H13 H N N 239
J1C H13A H N N 240
J1C H14 H N N 241
J1C H14A H N N 242
J1C H15 H N N 243
J1C H15A H N N 244
J1C H16 H N N 245
J1C H16A H N N 246
J1C H23 H N N 247
J1C H23A H N N 248
J1C H23B H N N 249
J1C H24 H N N 250
J1C H24A H N N 251
J1C H24B H N N 252
J1C H27 H N N 253
J1C H27A H N N 254
J1C HN28 H N N 255
LEU N N N N 256
LEU CA C N S 257
LEU C C N N 258
LEU O O N N 259
LEU CB C N N 260
LEU CG C N N 261
LEU CD1 C N N 262
LEU CD2 C N N 263
LEU OXT O N N 264
LEU H H N N 265
LEU H2 H N N 266
LEU HA H N N 267
LEU HB2 H N N 268
LEU HB3 H N N 269
LEU HG H N N 270
LEU HD11 H N N 271
LEU HD12 H N N 272
LEU HD13 H N N 273
LEU HD21 H N N 274
LEU HD22 H N N 275
LEU HD23 H N N 276
LEU HXT H N N 277
LYS N N N N 278
LYS CA C N S 279
LYS C C N N 280
LYS O O N N 281
LYS CB C N N 282
LYS CG C N N 283
LYS CD C N N 284
LYS CE C N N 285
LYS NZ N N N 286
LYS OXT O N N 287
LYS H H N N 288
LYS H2 H N N 289
LYS HA H N N 290
LYS HB2 H N N 291
LYS HB3 H N N 292
LYS HG2 H N N 293
LYS HG3 H N N 294
LYS HD2 H N N 295
LYS HD3 H N N 296
LYS HE2 H N N 297
LYS HE3 H N N 298
LYS HZ1 H N N 299
LYS HZ2 H N N 300
LYS HZ3 H N N 301
LYS HXT H N N 302
MET N N N N 303
MET CA C N S 304
MET C C N N 305
MET O O N N 306
MET CB C N N 307
MET CG C N N 308
MET SD S N N 309
MET CE C N N 310
MET OXT O N N 311
MET H H N N 312
MET H2 H N N 313
MET HA H N N 314
MET HB2 H N N 315
MET HB3 H N N 316
MET HG2 H N N 317
MET HG3 H N N 318
MET HE1 H N N 319
MET HE2 H N N 320
MET HE3 H N N 321
MET HXT H N N 322
PHE N N N N 323
PHE CA C N S 324
PHE C C N N 325
PHE O O N N 326
PHE CB C N N 327
PHE CG C Y N 328
PHE CD1 C Y N 329
PHE CD2 C Y N 330
PHE CE1 C Y N 331
PHE CE2 C Y N 332
PHE CZ C Y N 333
PHE OXT O N N 334
PHE H H N N 335
PHE H2 H N N 336
PHE HA H N N 337
PHE HB2 H N N 338
PHE HB3 H N N 339
PHE HD1 H N N 340
PHE HD2 H N N 341
PHE HE1 H N N 342
PHE HE2 H N N 343
PHE HZ H N N 344
PHE HXT H N N 345
PRO N N N N 346
PRO CA C N S 347
PRO C C N N 348
PRO O O N N 349
PRO CB C N N 350
PRO CG C N N 351
PRO CD C N N 352
PRO OXT O N N 353
PRO H H N N 354
PRO HA H N N 355
PRO HB2 H N N 356
PRO HB3 H N N 357
PRO HG2 H N N 358
PRO HG3 H N N 359
PRO HD2 H N N 360
PRO HD3 H N N 361
PRO HXT H N N 362
SER N N N N 363
SER CA C N S 364
SER C C N N 365
SER O O N N 366
SER CB C N N 367
SER OG O N N 368
SER OXT O N N 369
SER H H N N 370
SER H2 H N N 371
SER HA H N N 372
SER HB2 H N N 373
SER HB3 H N N 374
SER HG H N N 375
SER HXT H N N 376
THR N N N N 377
THR CA C N S 378
THR C C N N 379
THR O O N N 380
THR CB C N R 381
THR OG1 O N N 382
THR CG2 C N N 383
THR OXT O N N 384
THR H H N N 385
THR H2 H N N 386
THR HA H N N 387
THR HB H N N 388
THR HG1 H N N 389
THR HG21 H N N 390
THR HG22 H N N 391
THR HG23 H N N 392
THR HXT H N N 393
TRP N N N N 394
TRP CA C N S 395
TRP C C N N 396
TRP O O N N 397
TRP CB C N N 398
TRP CG C Y N 399
TRP CD1 C Y N 400
TRP CD2 C Y N 401
TRP NE1 N Y N 402
TRP CE2 C Y N 403
TRP CE3 C Y N 404
TRP CZ2 C Y N 405
TRP CZ3 C Y N 406
TRP CH2 C Y N 407
TRP OXT O N N 408
TRP H H N N 409
TRP H2 H N N 410
TRP HA H N N 411
TRP HB2 H N N 412
TRP HB3 H N N 413
TRP HD1 H N N 414
TRP HE1 H N N 415
TRP HE3 H N N 416
TRP HZ2 H N N 417
TRP HZ3 H N N 418
TRP HH2 H N N 419
TRP HXT H N N 420
TYR N N N N 421
TYR CA C N S 422
TYR C C N N 423
TYR O O N N 424
TYR CB C N N 425
TYR CG C Y N 426
TYR CD1 C Y N 427
TYR CD2 C Y N 428
TYR CE1 C Y N 429
TYR CE2 C Y N 430
TYR CZ C Y N 431
TYR OH O N N 432
TYR OXT O N N 433
TYR H H N N 434
TYR H2 H N N 435
TYR HA H N N 436
TYR HB2 H N N 437
TYR HB3 H N N 438
TYR HD1 H N N 439
TYR HD2 H N N 440
TYR HE1 H N N 441
TYR HE2 H N N 442
TYR HH H N N 443
TYR HXT H N N 444
VAL N N N N 445
VAL CA C N S 446
VAL C C N N 447
VAL O O N N 448
VAL CB C N N 449
VAL CG1 C N N 450
VAL CG2 C N N 451
VAL OXT O N N 452
VAL H H N N 453
VAL H2 H N N 454
VAL HA H N N 455
VAL HB H N N 456
VAL HG11 H N N 457
VAL HG12 H N N 458
VAL HG13 H N N 459
VAL HG21 H N N 460
VAL HG22 H N N 461
VAL HG23 H N N 462
VAL HXT H N N 463
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ACT C O doub N N 1
ACT C OXT sing N N 2
ACT C CH3 sing N N 3
ACT CH3 H1 sing N N 4
ACT CH3 H2 sing N N 5
ACT CH3 H3 sing N N 6
ALA N CA sing N N 7
ALA N H sing N N 8
ALA N H2 sing N N 9
ALA CA C sing N N 10
ALA CA CB sing N N 11
ALA CA HA sing N N 12
ALA C O doub N N 13
ALA C OXT sing N N 14
ALA CB HB1 sing N N 15
ALA CB HB2 sing N N 16
ALA CB HB3 sing N N 17
ALA OXT HXT sing N N 18
ARG N CA sing N N 19
ARG N H sing N N 20
ARG N H2 sing N N 21
ARG CA C sing N N 22
ARG CA CB sing N N 23
ARG CA HA sing N N 24
ARG C O doub N N 25
ARG C OXT sing N N 26
ARG CB CG sing N N 27
ARG CB HB2 sing N N 28
ARG CB HB3 sing N N 29
ARG CG CD sing N N 30
ARG CG HG2 sing N N 31
ARG CG HG3 sing N N 32
ARG CD NE sing N N 33
ARG CD HD2 sing N N 34
ARG CD HD3 sing N N 35
ARG NE CZ sing N N 36
ARG NE HE sing N N 37
ARG CZ NH1 sing N N 38
ARG CZ NH2 doub N N 39
ARG NH1 HH11 sing N N 40
ARG NH1 HH12 sing N N 41
ARG NH2 HH21 sing N N 42
ARG NH2 HH22 sing N N 43
ARG OXT HXT sing N N 44
ASN N CA sing N N 45
ASN N H sing N N 46
ASN N H2 sing N N 47
ASN CA C sing N N 48
ASN CA CB sing N N 49
ASN CA HA sing N N 50
ASN C O doub N N 51
ASN C OXT sing N N 52
ASN CB CG sing N N 53
ASN CB HB2 sing N N 54
ASN CB HB3 sing N N 55
ASN CG OD1 doub N N 56
ASN CG ND2 sing N N 57
ASN ND2 HD21 sing N N 58
ASN ND2 HD22 sing N N 59
ASN OXT HXT sing N N 60
ASP N CA sing N N 61
ASP N H sing N N 62
ASP N H2 sing N N 63
ASP CA C sing N N 64
ASP CA CB sing N N 65
ASP CA HA sing N N 66
ASP C O doub N N 67
ASP C OXT sing N N 68
ASP CB CG sing N N 69
ASP CB HB2 sing N N 70
ASP CB HB3 sing N N 71
ASP CG OD1 doub N N 72
ASP CG OD2 sing N N 73
ASP OD2 HD2 sing N N 74
ASP OXT HXT sing N N 75
GLN N CA sing N N 76
GLN N H sing N N 77
GLN N H2 sing N N 78
GLN CA C sing N N 79
GLN CA CB sing N N 80
GLN CA HA sing N N 81
GLN C O doub N N 82
GLN C OXT sing N N 83
GLN CB CG sing N N 84
GLN CB HB2 sing N N 85
GLN CB HB3 sing N N 86
GLN CG CD sing N N 87
GLN CG HG2 sing N N 88
GLN CG HG3 sing N N 89
GLN CD OE1 doub N N 90
GLN CD NE2 sing N N 91
GLN NE2 HE21 sing N N 92
GLN NE2 HE22 sing N N 93
GLN OXT HXT sing N N 94
GLU N CA sing N N 95
GLU N H sing N N 96
GLU N H2 sing N N 97
GLU CA C sing N N 98
GLU CA CB sing N N 99
GLU CA HA sing N N 100
GLU C O doub N N 101
GLU C OXT sing N N 102
GLU CB CG sing N N 103
GLU CB HB2 sing N N 104
GLU CB HB3 sing N N 105
GLU CG CD sing N N 106
GLU CG HG2 sing N N 107
GLU CG HG3 sing N N 108
GLU CD OE1 doub N N 109
GLU CD OE2 sing N N 110
GLU OE2 HE2 sing N N 111
GLU OXT HXT sing N N 112
GLY N CA sing N N 113
GLY N H sing N N 114
GLY N H2 sing N N 115
GLY CA C sing N N 116
GLY CA HA2 sing N N 117
GLY CA HA3 sing N N 118
GLY C O doub N N 119
GLY C OXT sing N N 120
GLY OXT HXT sing N N 121
HIS N CA sing N N 122
HIS N H sing N N 123
HIS N H2 sing N N 124
HIS CA C sing N N 125
HIS CA CB sing N N 126
HIS CA HA sing N N 127
HIS C O doub N N 128
HIS C OXT sing N N 129
HIS CB CG sing N N 130
HIS CB HB2 sing N N 131
HIS CB HB3 sing N N 132
HIS CG ND1 sing Y N 133
HIS CG CD2 doub Y N 134
HIS ND1 CE1 doub Y N 135
HIS ND1 HD1 sing N N 136
HIS CD2 NE2 sing Y N 137
HIS CD2 HD2 sing N N 138
HIS CE1 NE2 sing Y N 139
HIS CE1 HE1 sing N N 140
HIS NE2 HE2 sing N N 141
HIS OXT HXT sing N N 142
HOH O H1 sing N N 143
HOH O H2 sing N N 144
ILE N CA sing N N 145
ILE N H sing N N 146
ILE N H2 sing N N 147
ILE CA C sing N N 148
ILE CA CB sing N N 149
ILE CA HA sing N N 150
ILE C O doub N N 151
ILE C OXT sing N N 152
ILE CB CG1 sing N N 153
ILE CB CG2 sing N N 154
ILE CB HB sing N N 155
ILE CG1 CD1 sing N N 156
ILE CG1 HG12 sing N N 157
ILE CG1 HG13 sing N N 158
ILE CG2 HG21 sing N N 159
ILE CG2 HG22 sing N N 160
ILE CG2 HG23 sing N N 161
ILE CD1 HD11 sing N N 162
ILE CD1 HD12 sing N N 163
ILE CD1 HD13 sing N N 164
ILE OXT HXT sing N N 165
J1C C1 O1 sing N N 166
J1C C1 C2 sing N N 167
J1C C1 C10 sing N N 168
J1C N1 C4 sing N N 169
J1C N1 C5 sing Y N 170
J1C N1 C9 sing Y N 171
J1C O1 C4 sing N N 172
J1C S1 C10 sing N N 173
J1C S1 C11 sing N N 174
J1C C2 O2 sing N N 175
J1C C2 C3 sing N N 176
J1C N2 C5 doub Y N 177
J1C N2 C6 sing Y N 178
J1C C3 O3 sing N N 179
J1C C3 C4 sing N N 180
J1C N3 C7 sing N N 181
J1C N4 C7 doub Y N 182
J1C N4 C8 sing Y N 183
J1C O4 C18 doub N N 184
J1C N5 C8 doub Y N 185
J1C N5 C9 sing Y N 186
J1C O5 C20 doub N N 187
J1C C6 C7 sing Y N 188
J1C C6 C9 doub Y N 189
J1C N6 C13 sing N N 190
J1C N6 C14 sing N N 191
J1C N6 C16 sing N N 192
J1C N8 C19 doub N N 193
J1C N8 C25 sing N N 194
J1C N9 C19 sing N N 195
J1C N10 C19 sing N N 196
J1C N10 C20 sing N N 197
J1C C11 C12 sing N N 198
J1C C11 C15 sing N N 199
J1C N11 C21 doub N N 200
J1C N11 C26 sing N N 201
J1C C12 C13 sing N N 202
J1C N12 C22 sing N N 203
J1C N12 C25 sing N N 204
J1C C14 C15 sing N N 205
J1C C16 C27 sing N N 206
J1C C18 C21 sing N N 207
J1C C18 N28 sing N N 208
J1C C20 C26 sing N N 209
J1C C21 C22 sing N N 210
J1C C22 C23 sing N N 211
J1C C22 C24 sing N N 212
J1C C25 C26 doub N N 213
J1C C27 N28 sing N N 214
J1C C1 H1 sing N N 215
J1C C2 H2 sing N N 216
J1C O2 HO2 sing N N 217
J1C C3 H3 sing N N 218
J1C N3 HN3 sing N N 219
J1C N3 HN3A sing N N 220
J1C O3 HO3 sing N N 221
J1C C4 H4 sing N N 222
J1C C5 H5 sing N N 223
J1C C8 H8 sing N N 224
J1C N9 HN9 sing N N 225
J1C N9 HN9A sing N N 226
J1C C10 H10 sing N N 227
J1C C10 H10A sing N N 228
J1C N10 HN10 sing N N 229
J1C C11 H11 sing N N 230
J1C C12 H12 sing N N 231
J1C C12 H12A sing N N 232
J1C N12 HN12 sing N N 233
J1C C13 H13 sing N N 234
J1C C13 H13A sing N N 235
J1C C14 H14 sing N N 236
J1C C14 H14A sing N N 237
J1C C15 H15 sing N N 238
J1C C15 H15A sing N N 239
J1C C16 H16 sing N N 240
J1C C16 H16A sing N N 241
J1C C23 H23 sing N N 242
J1C C23 H23A sing N N 243
J1C C23 H23B sing N N 244
J1C C24 H24 sing N N 245
J1C C24 H24A sing N N 246
J1C C24 H24B sing N N 247
J1C C27 H27 sing N N 248
J1C C27 H27A sing N N 249
J1C N28 HN28 sing N N 250
LEU N CA sing N N 251
LEU N H sing N N 252
LEU N H2 sing N N 253
LEU CA C sing N N 254
LEU CA CB sing N N 255
LEU CA HA sing N N 256
LEU C O doub N N 257
LEU C OXT sing N N 258
LEU CB CG sing N N 259
LEU CB HB2 sing N N 260
LEU CB HB3 sing N N 261
LEU CG CD1 sing N N 262
LEU CG CD2 sing N N 263
LEU CG HG sing N N 264
LEU CD1 HD11 sing N N 265
LEU CD1 HD12 sing N N 266
LEU CD1 HD13 sing N N 267
LEU CD2 HD21 sing N N 268
LEU CD2 HD22 sing N N 269
LEU CD2 HD23 sing N N 270
LEU OXT HXT sing N N 271
LYS N CA sing N N 272
LYS N H sing N N 273
LYS N H2 sing N N 274
LYS CA C sing N N 275
LYS CA CB sing N N 276
LYS CA HA sing N N 277
LYS C O doub N N 278
LYS C OXT sing N N 279
LYS CB CG sing N N 280
LYS CB HB2 sing N N 281
LYS CB HB3 sing N N 282
LYS CG CD sing N N 283
LYS CG HG2 sing N N 284
LYS CG HG3 sing N N 285
LYS CD CE sing N N 286
LYS CD HD2 sing N N 287
LYS CD HD3 sing N N 288
LYS CE NZ sing N N 289
LYS CE HE2 sing N N 290
LYS CE HE3 sing N N 291
LYS NZ HZ1 sing N N 292
LYS NZ HZ2 sing N N 293
LYS NZ HZ3 sing N N 294
LYS OXT HXT sing N N 295
MET N CA sing N N 296
MET N H sing N N 297
MET N H2 sing N N 298
MET CA C sing N N 299
MET CA CB sing N N 300
MET CA HA sing N N 301
MET C O doub N N 302
MET C OXT sing N N 303
MET CB CG sing N N 304
MET CB HB2 sing N N 305
MET CB HB3 sing N N 306
MET CG SD sing N N 307
MET CG HG2 sing N N 308
MET CG HG3 sing N N 309
MET SD CE sing N N 310
MET CE HE1 sing N N 311
MET CE HE2 sing N N 312
MET CE HE3 sing N N 313
MET OXT HXT sing N N 314
PHE N CA sing N N 315
PHE N H sing N N 316
PHE N H2 sing N N 317
PHE CA C sing N N 318
PHE CA CB sing N N 319
PHE CA HA sing N N 320
PHE C O doub N N 321
PHE C OXT sing N N 322
PHE CB CG sing N N 323
PHE CB HB2 sing N N 324
PHE CB HB3 sing N N 325
PHE CG CD1 doub Y N 326
PHE CG CD2 sing Y N 327
PHE CD1 CE1 sing Y N 328
PHE CD1 HD1 sing N N 329
PHE CD2 CE2 doub Y N 330
PHE CD2 HD2 sing N N 331
PHE CE1 CZ doub Y N 332
PHE CE1 HE1 sing N N 333
PHE CE2 CZ sing Y N 334
PHE CE2 HE2 sing N N 335
PHE CZ HZ sing N N 336
PHE OXT HXT sing N N 337
PRO N CA sing N N 338
PRO N CD sing N N 339
PRO N H sing N N 340
PRO CA C sing N N 341
PRO CA CB sing N N 342
PRO CA HA sing N N 343
PRO C O doub N N 344
PRO C OXT sing N N 345
PRO CB CG sing N N 346
PRO CB HB2 sing N N 347
PRO CB HB3 sing N N 348
PRO CG CD sing N N 349
PRO CG HG2 sing N N 350
PRO CG HG3 sing N N 351
PRO CD HD2 sing N N 352
PRO CD HD3 sing N N 353
PRO OXT HXT sing N N 354
SER N CA sing N N 355
SER N H sing N N 356
SER N H2 sing N N 357
SER CA C sing N N 358
SER CA CB sing N N 359
SER CA HA sing N N 360
SER C O doub N N 361
SER C OXT sing N N 362
SER CB OG sing N N 363
SER CB HB2 sing N N 364
SER CB HB3 sing N N 365
SER OG HG sing N N 366
SER OXT HXT sing N N 367
THR N CA sing N N 368
THR N H sing N N 369
THR N H2 sing N N 370
THR CA C sing N N 371
THR CA CB sing N N 372
THR CA HA sing N N 373
THR C O doub N N 374
THR C OXT sing N N 375
THR CB OG1 sing N N 376
THR CB CG2 sing N N 377
THR CB HB sing N N 378
THR OG1 HG1 sing N N 379
THR CG2 HG21 sing N N 380
THR CG2 HG22 sing N N 381
THR CG2 HG23 sing N N 382
THR OXT HXT sing N N 383
TRP N CA sing N N 384
TRP N H sing N N 385
TRP N H2 sing N N 386
TRP CA C sing N N 387
TRP CA CB sing N N 388
TRP CA HA sing N N 389
TRP C O doub N N 390
TRP C OXT sing N N 391
TRP CB CG sing N N 392
TRP CB HB2 sing N N 393
TRP CB HB3 sing N N 394
TRP CG CD1 doub Y N 395
TRP CG CD2 sing Y N 396
TRP CD1 NE1 sing Y N 397
TRP CD1 HD1 sing N N 398
TRP CD2 CE2 doub Y N 399
TRP CD2 CE3 sing Y N 400
TRP NE1 CE2 sing Y N 401
TRP NE1 HE1 sing N N 402
TRP CE2 CZ2 sing Y N 403
TRP CE3 CZ3 doub Y N 404
TRP CE3 HE3 sing N N 405
TRP CZ2 CH2 doub Y N 406
TRP CZ2 HZ2 sing N N 407
TRP CZ3 CH2 sing Y N 408
TRP CZ3 HZ3 sing N N 409
TRP CH2 HH2 sing N N 410
TRP OXT HXT sing N N 411
TYR N CA sing N N 412
TYR N H sing N N 413
TYR N H2 sing N N 414
TYR CA C sing N N 415
TYR CA CB sing N N 416
TYR CA HA sing N N 417
TYR C O doub N N 418
TYR C OXT sing N N 419
TYR CB CG sing N N 420
TYR CB HB2 sing N N 421
TYR CB HB3 sing N N 422
TYR CG CD1 doub Y N 423
TYR CG CD2 sing Y N 424
TYR CD1 CE1 sing Y N 425
TYR CD1 HD1 sing N N 426
TYR CD2 CE2 doub Y N 427
TYR CD2 HD2 sing N N 428
TYR CE1 CZ doub Y N 429
TYR CE1 HE1 sing N N 430
TYR CE2 CZ sing Y N 431
TYR CE2 HE2 sing N N 432
TYR CZ OH sing N N 433
TYR OH HH sing N N 434
TYR OXT HXT sing N N 435
VAL N CA sing N N 436
VAL N H sing N N 437
VAL N H2 sing N N 438
VAL CA C sing N N 439
VAL CA CB sing N N 440
VAL CA HA sing N N 441
VAL C O doub N N 442
VAL C OXT sing N N 443
VAL CB CG1 sing N N 444
VAL CB CG2 sing N N 445
VAL CB HB sing N N 446
VAL CG1 HG11 sing N N 447
VAL CG1 HG12 sing N N 448
VAL CG1 HG13 sing N N 449
VAL CG2 HG21 sing N N 450
VAL CG2 HG22 sing N N 451
VAL CG2 HG23 sing N N 452
VAL OXT HXT sing N N 453
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"
J1C
3 'ACETATE ION'
ACT
4 water
HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3UDE
_pdbx_initial_refinement_model.details 'PDB Entry 3UDE'
#