data_3UDV # _entry.id 3UDV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UDV pdb_00003udv 10.2210/pdb3udv/pdb RCSB RCSB068630 ? ? WWPDB D_1000068630 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3UD5 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1A' unspecified PDB 3UDE 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1B' unspecified # _pdbx_database_status.entry_id 3UDV _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-10-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Shaw, G.' 1 ? 'Shi, G.' 2 ? 'Ji, X.' 3 0000-0001-6942-1514 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: New design with improved properties.' Bioorg.Med.Chem. 20 47 57 2012 BMECEP UK 0968-0896 1200 ? 22169600 10.1016/j.bmc.2011.11.032 1 ;Bisubstrate analogue inhibitors of 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase: synthesis and biochemical and crystallographic studies. ; J.Med.Chem. 44 1364 1371 2001 JMCMAR US 0022-2623 0151 ? 11311059 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shi, G.' 1 ? primary 'Shaw, G.' 2 ? primary 'Liang, Y.H.' 3 ? primary 'Subburaman, P.' 4 ? primary 'Li, Y.' 5 ? primary 'Wu, Y.' 6 ? primary 'Yan, H.' 7 ? primary 'Ji, X.' 8 0000-0001-6942-1514 1 'Shi, G.' 9 ? 1 'Blaszczyk, J.' 10 ? 1 'Ji, X.' 11 ? 1 'Yan, H.' 12 ? # _cell.length_a 53.00 _cell.length_b 70.64 _cell.length_c 36.25 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 3UDV _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3UDV _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase' 17966.535 1 2.7.6.3 ? ? ? 2 non-polymer syn "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" 628.706 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 91 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, PPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW ; _entity_poly.pdbx_seq_one_letter_code_can ;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 VAL n 1 3 ALA n 1 4 TYR n 1 5 ILE n 1 6 ALA n 1 7 ILE n 1 8 GLY n 1 9 SER n 1 10 ASN n 1 11 LEU n 1 12 ALA n 1 13 SER n 1 14 PRO n 1 15 LEU n 1 16 GLU n 1 17 GLN n 1 18 VAL n 1 19 ASN n 1 20 ALA n 1 21 ALA n 1 22 LEU n 1 23 LYS n 1 24 ALA n 1 25 LEU n 1 26 GLY n 1 27 ASP n 1 28 ILE n 1 29 PRO n 1 30 GLU n 1 31 SER n 1 32 HIS n 1 33 ILE n 1 34 LEU n 1 35 THR n 1 36 VAL n 1 37 SER n 1 38 SER n 1 39 PHE n 1 40 TYR n 1 41 ARG n 1 42 THR n 1 43 PRO n 1 44 PRO n 1 45 LEU n 1 46 GLY n 1 47 PRO n 1 48 GLN n 1 49 ASP n 1 50 GLN n 1 51 PRO n 1 52 ASP n 1 53 TYR n 1 54 LEU n 1 55 ASN n 1 56 ALA n 1 57 ALA n 1 58 VAL n 1 59 ALA n 1 60 LEU n 1 61 GLU n 1 62 THR n 1 63 SER n 1 64 LEU n 1 65 ALA n 1 66 PRO n 1 67 GLU n 1 68 GLU n 1 69 LEU n 1 70 LEU n 1 71 ASN n 1 72 HIS n 1 73 THR n 1 74 GLN n 1 75 ARG n 1 76 ILE n 1 77 GLU n 1 78 LEU n 1 79 GLN n 1 80 GLN n 1 81 GLY n 1 82 ARG n 1 83 VAL n 1 84 ARG n 1 85 LYS n 1 86 ALA n 1 87 GLU n 1 88 ARG n 1 89 TRP n 1 90 GLY n 1 91 PRO n 1 92 ARG n 1 93 THR n 1 94 LEU n 1 95 ASP n 1 96 LEU n 1 97 ASP n 1 98 ILE n 1 99 MET n 1 100 LEU n 1 101 PHE n 1 102 GLY n 1 103 ASN n 1 104 GLU n 1 105 VAL n 1 106 ILE n 1 107 ASN n 1 108 THR n 1 109 GLU n 1 110 ARG n 1 111 LEU n 1 112 THR n 1 113 VAL n 1 114 PRO n 1 115 HIS n 1 116 TYR n 1 117 ASP n 1 118 MET n 1 119 LYS n 1 120 ASN n 1 121 ARG n 1 122 GLY n 1 123 PHE n 1 124 MET n 1 125 LEU n 1 126 TRP n 1 127 PRO n 1 128 LEU n 1 129 PHE n 1 130 GLU n 1 131 ILE n 1 132 ALA n 1 133 PRO n 1 134 GLU n 1 135 LEU n 1 136 VAL n 1 137 PHE n 1 138 PRO n 1 139 ASP n 1 140 GLY n 1 141 GLU n 1 142 MET n 1 143 LEU n 1 144 ARG n 1 145 GLN n 1 146 ILE n 1 147 LEU n 1 148 HIS n 1 149 THR n 1 150 ARG n 1 151 ALA n 1 152 PHE n 1 153 ASP n 1 154 LYS n 1 155 LEU n 1 156 ASN n 1 157 LYS n 1 158 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b0142, foIK, folK, JW0138' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET17b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HPPK_ECOLI _struct_ref.pdbx_db_accession P26281 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQ GRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UDV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P26281 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 158 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 J1C non-polymer . "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" ? 'C26 H36 N12 O5 S' 628.706 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3UDV _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details 'PEG 3350, ammonium acetate, Bis-Tris, pH 7.5, vapor diffusion, sitting drop, temperature 292K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-02-13 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength_list 1.00000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 3UDV _reflns.d_resolution_high 1.790 _reflns.d_resolution_low 30.000 _reflns.number_obs 11716 _reflns.pdbx_Rmerge_I_obs 0.074 _reflns.pdbx_netI_over_sigmaI 11.800 _reflns.pdbx_chi_squared 0.981 _reflns.pdbx_redundancy 6.000 _reflns.percent_possible_obs 87.600 _reflns.observed_criterion_sigma_F -6 _reflns.observed_criterion_sigma_I -3 _reflns.number_all 11716 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.790 1.850 ? ? ? 0.322 ? ? 0.967 2.800 ? 658 50.400 1 1 1.850 1.930 ? ? ? 0.327 ? ? 0.955 3.700 ? 864 66.000 2 1 1.930 2.020 ? ? ? 0.288 ? ? 0.976 4.700 ? 1027 78.100 3 1 2.020 2.120 ? ? ? 0.245 ? ? 0.959 5.600 ? 1174 89.100 4 1 2.120 2.260 ? ? ? 0.212 ? ? 1.042 6.200 ? 1229 94.200 5 1 2.260 2.430 ? ? ? 0.160 ? ? 0.975 6.600 ? 1284 96.500 6 1 2.430 2.670 ? ? ? 0.139 ? ? 0.971 7.100 ? 1314 99.800 7 1 2.670 3.060 ? ? ? 0.095 ? ? 0.999 7.200 ? 1354 100.000 8 1 3.060 3.850 ? ? ? 0.050 ? ? 0.981 7.100 ? 1355 100.000 9 1 3.850 30.000 ? ? ? 0.035 ? ? 0.959 6.600 ? 1457 99.900 10 1 # _refine.entry_id 3UDV _refine.ls_d_res_high 1.8800 _refine.ls_d_res_low 29.9210 _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 92.7800 _refine.ls_number_reflns_obs 10754 _refine.ls_number_reflns_all 10754 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2155 _refine.ls_R_factor_R_work 0.2099 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2749 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 8.5500 _refine.ls_number_reflns_R_free 920 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 27.3913 _refine.solvent_model_param_bsol 41.3710 _refine.solvent_model_param_ksol 0.3820 _refine.pdbx_isotropic_thermal_model Isotropic _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.4800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB Entry 3UDE' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 87.680 _refine.B_iso_min 5.180 _refine.pdbx_overall_phase_error 28.5400 _refine.occupancy_max 1.000 _refine.occupancy_min 0.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1235 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1374 _refine_hist.d_res_high 1.8800 _refine_hist.d_res_low 29.9210 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 1365 0.013 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1876 1.376 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 208 0.087 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 242 0.008 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 531 14.998 ? ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.8800 1.9791 7 72.0000 1052 . 0.2528 0.2881 . 98 . 1150 1150 . 'X-RAY DIFFRACTION' 1.9791 2.1031 7 86.0000 1265 . 0.2630 0.3664 . 119 . 1384 1384 . 'X-RAY DIFFRACTION' 2.1031 2.2654 7 94.0000 1413 . 0.2565 0.3442 . 131 . 1544 1544 . 'X-RAY DIFFRACTION' 2.2654 2.4933 7 97.0000 1450 . 0.2263 0.2976 . 136 . 1586 1586 . 'X-RAY DIFFRACTION' 2.4933 2.8538 7 100.0000 1496 . 0.2063 0.2929 . 140 . 1636 1636 . 'X-RAY DIFFRACTION' 2.8538 3.5945 7 100.0000 1547 . 0.1873 0.2601 . 145 . 1692 1692 . 'X-RAY DIFFRACTION' 3.5945 29.9246 7 100.0000 1611 . 0.1926 0.2331 . 151 . 1762 1762 . 'X-RAY DIFFRACTION' # _struct.entry_id 3UDV _struct.title 'Crystal structure of E. coli HPPK in complex with bisubstrate analogue inhibitor J1C' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UDV _struct_keywords.text 'Alpha Beta, Kinase, ATP Binding, Pyrophosphoryl Transfer, TRANSFERASE-TRANSFERASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 14 ? ILE A 28 ? PRO A 14 ILE A 28 1 ? 15 HELX_P HELX_P2 2 ALA A 65 ? GLY A 81 ? ALA A 65 GLY A 81 1 ? 17 HELX_P HELX_P3 3 ASP A 117 ? ASN A 120 ? ASP A 117 ASN A 120 5 ? 4 HELX_P HELX_P4 4 ARG A 121 ? ALA A 132 ? ARG A 121 ALA A 132 1 ? 12 HELX_P HELX_P5 5 MET A 142 ? ALA A 151 ? MET A 142 ALA A 151 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 90 A . ? GLY 90 A PRO 91 A ? PRO 91 A 1 0.75 2 VAL 113 A . ? VAL 113 A PRO 114 A ? PRO 114 A 1 -8.61 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36 A 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62 A 3 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9 A 4 ASP A 95 ? PHE A 101 ? ASP A 95 PHE A 101 B 1 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36 B 2 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62 B 3 TYR A 40 ? THR A 42 ? TYR A 40 THR A 42 B 4 ASN A 156 ? LYS A 157 ? ASN A 156 LYS A 157 C 1 ILE A 106 ? ASN A 107 ? ILE A 106 ASN A 107 C 2 THR A 112 ? VAL A 113 ? THR A 112 VAL A 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59 A 2 3 O LEU A 60 ? O LEU A 60 N ALA A 3 ? N ALA A 3 A 3 4 N ALA A 6 ? N ALA A 6 O ASP A 97 ? O ASP A 97 B 1 2 N LEU A 34 ? N LEU A 34 O ALA A 59 ? O ALA A 59 B 2 3 O TYR A 53 ? O TYR A 53 N THR A 42 ? N THR A 42 B 3 4 N ARG A 41 ? N ARG A 41 O ASN A 156 ? O ASN A 156 C 1 2 N ILE A 106 ? N ILE A 106 O VAL A 113 ? O VAL A 113 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A J1C 171 ? 23 'BINDING SITE FOR RESIDUE J1C A 171' AC2 Software A ACT 191 ? 7 'BINDING SITE FOR RESIDUE ACT A 191' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 LYS A 23 ? LYS A 23 . ? 4_456 ? 2 AC1 23 THR A 42 ? THR A 42 . ? 1_555 ? 3 AC1 23 PRO A 43 ? PRO A 43 . ? 1_555 ? 4 AC1 23 LEU A 45 ? LEU A 45 . ? 1_555 ? 5 AC1 23 TYR A 53 ? TYR A 53 . ? 1_555 ? 6 AC1 23 ASN A 55 ? ASN A 55 . ? 1_555 ? 7 AC1 23 GLN A 74 ? GLN A 74 . ? 1_555 ? 8 AC1 23 GLU A 77 ? GLU A 77 . ? 1_555 ? 9 AC1 23 ARG A 88 ? ARG A 88 . ? 1_555 ? 10 AC1 23 TRP A 89 ? TRP A 89 . ? 1_555 ? 11 AC1 23 GLY A 90 ? GLY A 90 . ? 1_555 ? 12 AC1 23 ARG A 92 ? ARG A 92 . ? 1_555 ? 13 AC1 23 ASP A 95 ? ASP A 95 . ? 1_555 ? 14 AC1 23 ASP A 97 ? ASP A 97 . ? 1_555 ? 15 AC1 23 ILE A 98 ? ILE A 98 . ? 1_555 ? 16 AC1 23 ARG A 110 ? ARG A 110 . ? 1_555 ? 17 AC1 23 THR A 112 ? THR A 112 . ? 1_555 ? 18 AC1 23 PHE A 123 ? PHE A 123 . ? 1_555 ? 19 AC1 23 ACT C . ? ACT A 191 . ? 1_555 ? 20 AC1 23 HOH D . ? HOH A 232 . ? 1_555 ? 21 AC1 23 HOH D . ? HOH A 254 . ? 1_556 ? 22 AC1 23 HOH D . ? HOH A 255 . ? 1_555 ? 23 AC1 23 HOH D . ? HOH A 263 . ? 1_555 ? 24 AC2 7 ALA A 6 ? ALA A 6 . ? 1_555 ? 25 AC2 7 GLY A 8 ? GLY A 8 . ? 1_555 ? 26 AC2 7 ASN A 55 ? ASN A 55 . ? 1_555 ? 27 AC2 7 ASP A 97 ? ASP A 97 . ? 1_555 ? 28 AC2 7 MET A 124 ? MET A 124 . ? 1_555 ? 29 AC2 7 J1C B . ? J1C A 171 . ? 1_555 ? 30 AC2 7 HOH D . ? HOH A 227 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UDV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3UDV _atom_sites.fract_transf_matrix[1][1] 0.018867 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014156 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027587 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 VAL 83 83 ? ? ? A . n A 1 84 ARG 84 84 ? ? ? A . n A 1 85 LYS 85 85 ? ? ? A . n A 1 86 ALA 86 86 ? ? ? A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 MET 99 99 99 MET MET A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 MET 124 124 124 MET MET A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 MET 142 142 142 MET MET A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 HIS 148 148 148 HIS HIS A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 TRP 158 158 158 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J1C 1 171 171 J1C J1C A . C 3 ACT 1 191 191 ACT ACT A . D 4 HOH 1 201 201 HOH HOH A . D 4 HOH 2 202 202 HOH HOH A . D 4 HOH 3 203 203 HOH HOH A . D 4 HOH 4 204 204 HOH HOH A . D 4 HOH 5 205 205 HOH HOH A . D 4 HOH 6 206 206 HOH HOH A . D 4 HOH 7 207 207 HOH HOH A . D 4 HOH 8 208 208 HOH HOH A . D 4 HOH 9 209 209 HOH HOH A . D 4 HOH 10 210 210 HOH HOH A . D 4 HOH 11 211 211 HOH HOH A . D 4 HOH 12 212 212 HOH HOH A . D 4 HOH 13 213 213 HOH HOH A . D 4 HOH 14 214 214 HOH HOH A . D 4 HOH 15 215 215 HOH HOH A . D 4 HOH 16 216 216 HOH HOH A . D 4 HOH 17 217 217 HOH HOH A . D 4 HOH 18 218 218 HOH HOH A . D 4 HOH 19 219 219 HOH HOH A . D 4 HOH 20 220 220 HOH HOH A . D 4 HOH 21 221 221 HOH HOH A . D 4 HOH 22 222 222 HOH HOH A . D 4 HOH 23 223 223 HOH HOH A . D 4 HOH 24 224 224 HOH HOH A . D 4 HOH 25 225 225 HOH HOH A . D 4 HOH 26 226 226 HOH HOH A . D 4 HOH 27 227 227 HOH HOH A . D 4 HOH 28 228 228 HOH HOH A . D 4 HOH 29 229 229 HOH HOH A . D 4 HOH 30 230 230 HOH HOH A . D 4 HOH 31 231 231 HOH HOH A . D 4 HOH 32 232 232 HOH HOH A . D 4 HOH 33 233 233 HOH HOH A . D 4 HOH 34 234 234 HOH HOH A . D 4 HOH 35 235 235 HOH HOH A . D 4 HOH 36 236 236 HOH HOH A . D 4 HOH 37 237 237 HOH HOH A . D 4 HOH 38 238 238 HOH HOH A . D 4 HOH 39 239 239 HOH HOH A . D 4 HOH 40 240 240 HOH HOH A . D 4 HOH 41 241 241 HOH HOH A . D 4 HOH 42 242 242 HOH HOH A . D 4 HOH 43 243 243 HOH HOH A . D 4 HOH 44 244 244 HOH HOH A . D 4 HOH 45 245 245 HOH HOH A . D 4 HOH 46 246 246 HOH HOH A . D 4 HOH 47 247 247 HOH HOH A . D 4 HOH 48 248 248 HOH HOH A . D 4 HOH 49 249 249 HOH HOH A . D 4 HOH 50 250 250 HOH HOH A . D 4 HOH 51 251 251 HOH HOH A . D 4 HOH 52 252 252 HOH HOH A . D 4 HOH 53 253 253 HOH HOH A . D 4 HOH 54 254 254 HOH HOH A . D 4 HOH 55 255 255 HOH HOH A . D 4 HOH 56 256 256 HOH HOH A . D 4 HOH 57 257 257 HOH HOH A . D 4 HOH 58 258 258 HOH HOH A . D 4 HOH 59 259 259 HOH HOH A . D 4 HOH 60 260 260 HOH HOH A . D 4 HOH 61 261 261 HOH HOH A . D 4 HOH 62 262 262 HOH HOH A . D 4 HOH 63 263 263 HOH HOH A . D 4 HOH 64 264 264 HOH HOH A . D 4 HOH 65 265 265 HOH HOH A . D 4 HOH 66 266 266 HOH HOH A . D 4 HOH 67 267 267 HOH HOH A . D 4 HOH 68 268 268 HOH HOH A . D 4 HOH 69 269 269 HOH HOH A . D 4 HOH 70 270 270 HOH HOH A . D 4 HOH 71 271 271 HOH HOH A . D 4 HOH 72 272 272 HOH HOH A . D 4 HOH 73 273 273 HOH HOH A . D 4 HOH 74 274 274 HOH HOH A . D 4 HOH 75 275 275 HOH HOH A . D 4 HOH 76 276 276 HOH HOH A . D 4 HOH 77 277 277 HOH HOH A . D 4 HOH 78 278 278 HOH HOH A . D 4 HOH 79 279 279 HOH HOH A . D 4 HOH 80 280 280 HOH HOH A . D 4 HOH 81 281 281 HOH HOH A . D 4 HOH 82 282 282 HOH HOH A . D 4 HOH 83 283 283 HOH HOH A . D 4 HOH 84 284 284 HOH HOH A . D 4 HOH 85 285 285 HOH HOH A . D 4 HOH 86 286 286 HOH HOH A . D 4 HOH 87 287 287 HOH HOH A . D 4 HOH 88 288 288 HOH HOH A . D 4 HOH 89 289 289 HOH HOH A . D 4 HOH 90 290 290 HOH HOH A . D 4 HOH 91 291 291 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-04 2 'Structure model' 1 1 2012-01-18 3 'Structure model' 1 2 2023-08-30 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' audit_author 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' citation_author 5 3 'Structure model' database_2 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_audit_author.identifier_ORCID' 2 3 'Structure model' '_citation_author.identifier_ORCID' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 PHENIX . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 45 ? ? -69.05 96.34 2 1 TRP A 89 ? ? -91.08 31.65 3 1 LEU A 94 ? ? -171.73 112.19 4 1 PRO A 114 ? ? -48.00 154.29 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A VAL 2 ? CA B A VAL 2 CA 2 1 Y 0 A VAL 2 ? CB B A VAL 2 CB 3 1 Y 0 A VAL 2 ? CG1 B A VAL 2 CG1 4 1 Y 0 A VAL 2 ? CG2 B A VAL 2 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 83 ? A VAL 83 2 1 Y 1 A ARG 84 ? A ARG 84 3 1 Y 1 A LYS 85 ? A LYS 85 4 1 Y 1 A ALA 86 ? A ALA 86 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 GLN N N N N 81 GLN CA C N S 82 GLN C C N N 83 GLN O O N N 84 GLN CB C N N 85 GLN CG C N N 86 GLN CD C N N 87 GLN OE1 O N N 88 GLN NE2 N N N 89 GLN OXT O N N 90 GLN H H N N 91 GLN H2 H N N 92 GLN HA H N N 93 GLN HB2 H N N 94 GLN HB3 H N N 95 GLN HG2 H N N 96 GLN HG3 H N N 97 GLN HE21 H N N 98 GLN HE22 H N N 99 GLN HXT H N N 100 GLU N N N N 101 GLU CA C N S 102 GLU C C N N 103 GLU O O N N 104 GLU CB C N N 105 GLU CG C N N 106 GLU CD C N N 107 GLU OE1 O N N 108 GLU OE2 O N N 109 GLU OXT O N N 110 GLU H H N N 111 GLU H2 H N N 112 GLU HA H N N 113 GLU HB2 H N N 114 GLU HB3 H N N 115 GLU HG2 H N N 116 GLU HG3 H N N 117 GLU HE2 H N N 118 GLU HXT H N N 119 GLY N N N N 120 GLY CA C N N 121 GLY C C N N 122 GLY O O N N 123 GLY OXT O N N 124 GLY H H N N 125 GLY H2 H N N 126 GLY HA2 H N N 127 GLY HA3 H N N 128 GLY HXT H N N 129 HIS N N N N 130 HIS CA C N S 131 HIS C C N N 132 HIS O O N N 133 HIS CB C N N 134 HIS CG C Y N 135 HIS ND1 N Y N 136 HIS CD2 C Y N 137 HIS CE1 C Y N 138 HIS NE2 N Y N 139 HIS OXT O N N 140 HIS H H N N 141 HIS H2 H N N 142 HIS HA H N N 143 HIS HB2 H N N 144 HIS HB3 H N N 145 HIS HD1 H N N 146 HIS HD2 H N N 147 HIS HE1 H N N 148 HIS HE2 H N N 149 HIS HXT H N N 150 HOH O O N N 151 HOH H1 H N N 152 HOH H2 H N N 153 ILE N N N N 154 ILE CA C N S 155 ILE C C N N 156 ILE O O N N 157 ILE CB C N S 158 ILE CG1 C N N 159 ILE CG2 C N N 160 ILE CD1 C N N 161 ILE OXT O N N 162 ILE H H N N 163 ILE H2 H N N 164 ILE HA H N N 165 ILE HB H N N 166 ILE HG12 H N N 167 ILE HG13 H N N 168 ILE HG21 H N N 169 ILE HG22 H N N 170 ILE HG23 H N N 171 ILE HD11 H N N 172 ILE HD12 H N N 173 ILE HD13 H N N 174 ILE HXT H N N 175 J1C C1 C N S 176 J1C N1 N Y N 177 J1C O1 O N N 178 J1C S1 S N N 179 J1C C2 C N S 180 J1C N2 N Y N 181 J1C O2 O N N 182 J1C C3 C N R 183 J1C N3 N N N 184 J1C O3 O N N 185 J1C C4 C N R 186 J1C N4 N Y N 187 J1C O4 O N N 188 J1C C5 C Y N 189 J1C N5 N Y N 190 J1C O5 O N N 191 J1C C6 C Y N 192 J1C N6 N N N 193 J1C C7 C Y N 194 J1C C8 C Y N 195 J1C N8 N N N 196 J1C C9 C Y N 197 J1C N9 N N N 198 J1C C10 C N N 199 J1C N10 N N N 200 J1C C11 C N N 201 J1C N11 N N N 202 J1C C12 C N N 203 J1C N12 N N N 204 J1C C13 C N N 205 J1C C14 C N N 206 J1C C15 C N N 207 J1C C16 C N N 208 J1C C18 C N N 209 J1C C19 C N N 210 J1C C20 C N N 211 J1C C21 C N N 212 J1C C22 C N N 213 J1C C23 C N N 214 J1C C24 C N N 215 J1C C25 C N N 216 J1C C26 C N N 217 J1C C27 C N N 218 J1C N28 N N N 219 J1C H1 H N N 220 J1C H2 H N N 221 J1C HO2 H N N 222 J1C H3 H N N 223 J1C HN3 H N N 224 J1C HN3A H N N 225 J1C HO3 H N N 226 J1C H4 H N N 227 J1C H5 H N N 228 J1C H8 H N N 229 J1C HN9 H N N 230 J1C HN9A H N N 231 J1C H10 H N N 232 J1C H10A H N N 233 J1C HN10 H N N 234 J1C H11 H N N 235 J1C H12 H N N 236 J1C H12A H N N 237 J1C HN12 H N N 238 J1C H13 H N N 239 J1C H13A H N N 240 J1C H14 H N N 241 J1C H14A H N N 242 J1C H15 H N N 243 J1C H15A H N N 244 J1C H16 H N N 245 J1C H16A H N N 246 J1C H23 H N N 247 J1C H23A H N N 248 J1C H23B H N N 249 J1C H24 H N N 250 J1C H24A H N N 251 J1C H24B H N N 252 J1C H27 H N N 253 J1C H27A H N N 254 J1C HN28 H N N 255 LEU N N N N 256 LEU CA C N S 257 LEU C C N N 258 LEU O O N N 259 LEU CB C N N 260 LEU CG C N N 261 LEU CD1 C N N 262 LEU CD2 C N N 263 LEU OXT O N N 264 LEU H H N N 265 LEU H2 H N N 266 LEU HA H N N 267 LEU HB2 H N N 268 LEU HB3 H N N 269 LEU HG H N N 270 LEU HD11 H N N 271 LEU HD12 H N N 272 LEU HD13 H N N 273 LEU HD21 H N N 274 LEU HD22 H N N 275 LEU HD23 H N N 276 LEU HXT H N N 277 LYS N N N N 278 LYS CA C N S 279 LYS C C N N 280 LYS O O N N 281 LYS CB C N N 282 LYS CG C N N 283 LYS CD C N N 284 LYS CE C N N 285 LYS NZ N N N 286 LYS OXT O N N 287 LYS H H N N 288 LYS H2 H N N 289 LYS HA H N N 290 LYS HB2 H N N 291 LYS HB3 H N N 292 LYS HG2 H N N 293 LYS HG3 H N N 294 LYS HD2 H N N 295 LYS HD3 H N N 296 LYS HE2 H N N 297 LYS HE3 H N N 298 LYS HZ1 H N N 299 LYS HZ2 H N N 300 LYS HZ3 H N N 301 LYS HXT H N N 302 MET N N N N 303 MET CA C N S 304 MET C C N N 305 MET O O N N 306 MET CB C N N 307 MET CG C N N 308 MET SD S N N 309 MET CE C N N 310 MET OXT O N N 311 MET H H N N 312 MET H2 H N N 313 MET HA H N N 314 MET HB2 H N N 315 MET HB3 H N N 316 MET HG2 H N N 317 MET HG3 H N N 318 MET HE1 H N N 319 MET HE2 H N N 320 MET HE3 H N N 321 MET HXT H N N 322 PHE N N N N 323 PHE CA C N S 324 PHE C C N N 325 PHE O O N N 326 PHE CB C N N 327 PHE CG C Y N 328 PHE CD1 C Y N 329 PHE CD2 C Y N 330 PHE CE1 C Y N 331 PHE CE2 C Y N 332 PHE CZ C Y N 333 PHE OXT O N N 334 PHE H H N N 335 PHE H2 H N N 336 PHE HA H N N 337 PHE HB2 H N N 338 PHE HB3 H N N 339 PHE HD1 H N N 340 PHE HD2 H N N 341 PHE HE1 H N N 342 PHE HE2 H N N 343 PHE HZ H N N 344 PHE HXT H N N 345 PRO N N N N 346 PRO CA C N S 347 PRO C C N N 348 PRO O O N N 349 PRO CB C N N 350 PRO CG C N N 351 PRO CD C N N 352 PRO OXT O N N 353 PRO H H N N 354 PRO HA H N N 355 PRO HB2 H N N 356 PRO HB3 H N N 357 PRO HG2 H N N 358 PRO HG3 H N N 359 PRO HD2 H N N 360 PRO HD3 H N N 361 PRO HXT H N N 362 SER N N N N 363 SER CA C N S 364 SER C C N N 365 SER O O N N 366 SER CB C N N 367 SER OG O N N 368 SER OXT O N N 369 SER H H N N 370 SER H2 H N N 371 SER HA H N N 372 SER HB2 H N N 373 SER HB3 H N N 374 SER HG H N N 375 SER HXT H N N 376 THR N N N N 377 THR CA C N S 378 THR C C N N 379 THR O O N N 380 THR CB C N R 381 THR OG1 O N N 382 THR CG2 C N N 383 THR OXT O N N 384 THR H H N N 385 THR H2 H N N 386 THR HA H N N 387 THR HB H N N 388 THR HG1 H N N 389 THR HG21 H N N 390 THR HG22 H N N 391 THR HG23 H N N 392 THR HXT H N N 393 TRP N N N N 394 TRP CA C N S 395 TRP C C N N 396 TRP O O N N 397 TRP CB C N N 398 TRP CG C Y N 399 TRP CD1 C Y N 400 TRP CD2 C Y N 401 TRP NE1 N Y N 402 TRP CE2 C Y N 403 TRP CE3 C Y N 404 TRP CZ2 C Y N 405 TRP CZ3 C Y N 406 TRP CH2 C Y N 407 TRP OXT O N N 408 TRP H H N N 409 TRP H2 H N N 410 TRP HA H N N 411 TRP HB2 H N N 412 TRP HB3 H N N 413 TRP HD1 H N N 414 TRP HE1 H N N 415 TRP HE3 H N N 416 TRP HZ2 H N N 417 TRP HZ3 H N N 418 TRP HH2 H N N 419 TRP HXT H N N 420 TYR N N N N 421 TYR CA C N S 422 TYR C C N N 423 TYR O O N N 424 TYR CB C N N 425 TYR CG C Y N 426 TYR CD1 C Y N 427 TYR CD2 C Y N 428 TYR CE1 C Y N 429 TYR CE2 C Y N 430 TYR CZ C Y N 431 TYR OH O N N 432 TYR OXT O N N 433 TYR H H N N 434 TYR H2 H N N 435 TYR HA H N N 436 TYR HB2 H N N 437 TYR HB3 H N N 438 TYR HD1 H N N 439 TYR HD2 H N N 440 TYR HE1 H N N 441 TYR HE2 H N N 442 TYR HH H N N 443 TYR HXT H N N 444 VAL N N N N 445 VAL CA C N S 446 VAL C C N N 447 VAL O O N N 448 VAL CB C N N 449 VAL CG1 C N N 450 VAL CG2 C N N 451 VAL OXT O N N 452 VAL H H N N 453 VAL H2 H N N 454 VAL HA H N N 455 VAL HB H N N 456 VAL HG11 H N N 457 VAL HG12 H N N 458 VAL HG13 H N N 459 VAL HG21 H N N 460 VAL HG22 H N N 461 VAL HG23 H N N 462 VAL HXT H N N 463 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 GLN N CA sing N N 76 GLN N H sing N N 77 GLN N H2 sing N N 78 GLN CA C sing N N 79 GLN CA CB sing N N 80 GLN CA HA sing N N 81 GLN C O doub N N 82 GLN C OXT sing N N 83 GLN CB CG sing N N 84 GLN CB HB2 sing N N 85 GLN CB HB3 sing N N 86 GLN CG CD sing N N 87 GLN CG HG2 sing N N 88 GLN CG HG3 sing N N 89 GLN CD OE1 doub N N 90 GLN CD NE2 sing N N 91 GLN NE2 HE21 sing N N 92 GLN NE2 HE22 sing N N 93 GLN OXT HXT sing N N 94 GLU N CA sing N N 95 GLU N H sing N N 96 GLU N H2 sing N N 97 GLU CA C sing N N 98 GLU CA CB sing N N 99 GLU CA HA sing N N 100 GLU C O doub N N 101 GLU C OXT sing N N 102 GLU CB CG sing N N 103 GLU CB HB2 sing N N 104 GLU CB HB3 sing N N 105 GLU CG CD sing N N 106 GLU CG HG2 sing N N 107 GLU CG HG3 sing N N 108 GLU CD OE1 doub N N 109 GLU CD OE2 sing N N 110 GLU OE2 HE2 sing N N 111 GLU OXT HXT sing N N 112 GLY N CA sing N N 113 GLY N H sing N N 114 GLY N H2 sing N N 115 GLY CA C sing N N 116 GLY CA HA2 sing N N 117 GLY CA HA3 sing N N 118 GLY C O doub N N 119 GLY C OXT sing N N 120 GLY OXT HXT sing N N 121 HIS N CA sing N N 122 HIS N H sing N N 123 HIS N H2 sing N N 124 HIS CA C sing N N 125 HIS CA CB sing N N 126 HIS CA HA sing N N 127 HIS C O doub N N 128 HIS C OXT sing N N 129 HIS CB CG sing N N 130 HIS CB HB2 sing N N 131 HIS CB HB3 sing N N 132 HIS CG ND1 sing Y N 133 HIS CG CD2 doub Y N 134 HIS ND1 CE1 doub Y N 135 HIS ND1 HD1 sing N N 136 HIS CD2 NE2 sing Y N 137 HIS CD2 HD2 sing N N 138 HIS CE1 NE2 sing Y N 139 HIS CE1 HE1 sing N N 140 HIS NE2 HE2 sing N N 141 HIS OXT HXT sing N N 142 HOH O H1 sing N N 143 HOH O H2 sing N N 144 ILE N CA sing N N 145 ILE N H sing N N 146 ILE N H2 sing N N 147 ILE CA C sing N N 148 ILE CA CB sing N N 149 ILE CA HA sing N N 150 ILE C O doub N N 151 ILE C OXT sing N N 152 ILE CB CG1 sing N N 153 ILE CB CG2 sing N N 154 ILE CB HB sing N N 155 ILE CG1 CD1 sing N N 156 ILE CG1 HG12 sing N N 157 ILE CG1 HG13 sing N N 158 ILE CG2 HG21 sing N N 159 ILE CG2 HG22 sing N N 160 ILE CG2 HG23 sing N N 161 ILE CD1 HD11 sing N N 162 ILE CD1 HD12 sing N N 163 ILE CD1 HD13 sing N N 164 ILE OXT HXT sing N N 165 J1C C1 O1 sing N N 166 J1C C1 C2 sing N N 167 J1C C1 C10 sing N N 168 J1C N1 C4 sing N N 169 J1C N1 C5 sing Y N 170 J1C N1 C9 sing Y N 171 J1C O1 C4 sing N N 172 J1C S1 C10 sing N N 173 J1C S1 C11 sing N N 174 J1C C2 O2 sing N N 175 J1C C2 C3 sing N N 176 J1C N2 C5 doub Y N 177 J1C N2 C6 sing Y N 178 J1C C3 O3 sing N N 179 J1C C3 C4 sing N N 180 J1C N3 C7 sing N N 181 J1C N4 C7 doub Y N 182 J1C N4 C8 sing Y N 183 J1C O4 C18 doub N N 184 J1C N5 C8 doub Y N 185 J1C N5 C9 sing Y N 186 J1C O5 C20 doub N N 187 J1C C6 C7 sing Y N 188 J1C C6 C9 doub Y N 189 J1C N6 C13 sing N N 190 J1C N6 C14 sing N N 191 J1C N6 C16 sing N N 192 J1C N8 C19 doub N N 193 J1C N8 C25 sing N N 194 J1C N9 C19 sing N N 195 J1C N10 C19 sing N N 196 J1C N10 C20 sing N N 197 J1C C11 C12 sing N N 198 J1C C11 C15 sing N N 199 J1C N11 C21 doub N N 200 J1C N11 C26 sing N N 201 J1C C12 C13 sing N N 202 J1C N12 C22 sing N N 203 J1C N12 C25 sing N N 204 J1C C14 C15 sing N N 205 J1C C16 C27 sing N N 206 J1C C18 C21 sing N N 207 J1C C18 N28 sing N N 208 J1C C20 C26 sing N N 209 J1C C21 C22 sing N N 210 J1C C22 C23 sing N N 211 J1C C22 C24 sing N N 212 J1C C25 C26 doub N N 213 J1C C27 N28 sing N N 214 J1C C1 H1 sing N N 215 J1C C2 H2 sing N N 216 J1C O2 HO2 sing N N 217 J1C C3 H3 sing N N 218 J1C N3 HN3 sing N N 219 J1C N3 HN3A sing N N 220 J1C O3 HO3 sing N N 221 J1C C4 H4 sing N N 222 J1C C5 H5 sing N N 223 J1C C8 H8 sing N N 224 J1C N9 HN9 sing N N 225 J1C N9 HN9A sing N N 226 J1C C10 H10 sing N N 227 J1C C10 H10A sing N N 228 J1C N10 HN10 sing N N 229 J1C C11 H11 sing N N 230 J1C C12 H12 sing N N 231 J1C C12 H12A sing N N 232 J1C N12 HN12 sing N N 233 J1C C13 H13 sing N N 234 J1C C13 H13A sing N N 235 J1C C14 H14 sing N N 236 J1C C14 H14A sing N N 237 J1C C15 H15 sing N N 238 J1C C15 H15A sing N N 239 J1C C16 H16 sing N N 240 J1C C16 H16A sing N N 241 J1C C23 H23 sing N N 242 J1C C23 H23A sing N N 243 J1C C23 H23B sing N N 244 J1C C24 H24 sing N N 245 J1C C24 H24A sing N N 246 J1C C24 H24B sing N N 247 J1C C27 H27 sing N N 248 J1C C27 H27A sing N N 249 J1C N28 HN28 sing N N 250 LEU N CA sing N N 251 LEU N H sing N N 252 LEU N H2 sing N N 253 LEU CA C sing N N 254 LEU CA CB sing N N 255 LEU CA HA sing N N 256 LEU C O doub N N 257 LEU C OXT sing N N 258 LEU CB CG sing N N 259 LEU CB HB2 sing N N 260 LEU CB HB3 sing N N 261 LEU CG CD1 sing N N 262 LEU CG CD2 sing N N 263 LEU CG HG sing N N 264 LEU CD1 HD11 sing N N 265 LEU CD1 HD12 sing N N 266 LEU CD1 HD13 sing N N 267 LEU CD2 HD21 sing N N 268 LEU CD2 HD22 sing N N 269 LEU CD2 HD23 sing N N 270 LEU OXT HXT sing N N 271 LYS N CA sing N N 272 LYS N H sing N N 273 LYS N H2 sing N N 274 LYS CA C sing N N 275 LYS CA CB sing N N 276 LYS CA HA sing N N 277 LYS C O doub N N 278 LYS C OXT sing N N 279 LYS CB CG sing N N 280 LYS CB HB2 sing N N 281 LYS CB HB3 sing N N 282 LYS CG CD sing N N 283 LYS CG HG2 sing N N 284 LYS CG HG3 sing N N 285 LYS CD CE sing N N 286 LYS CD HD2 sing N N 287 LYS CD HD3 sing N N 288 LYS CE NZ sing N N 289 LYS CE HE2 sing N N 290 LYS CE HE3 sing N N 291 LYS NZ HZ1 sing N N 292 LYS NZ HZ2 sing N N 293 LYS NZ HZ3 sing N N 294 LYS OXT HXT sing N N 295 MET N CA sing N N 296 MET N H sing N N 297 MET N H2 sing N N 298 MET CA C sing N N 299 MET CA CB sing N N 300 MET CA HA sing N N 301 MET C O doub N N 302 MET C OXT sing N N 303 MET CB CG sing N N 304 MET CB HB2 sing N N 305 MET CB HB3 sing N N 306 MET CG SD sing N N 307 MET CG HG2 sing N N 308 MET CG HG3 sing N N 309 MET SD CE sing N N 310 MET CE HE1 sing N N 311 MET CE HE2 sing N N 312 MET CE HE3 sing N N 313 MET OXT HXT sing N N 314 PHE N CA sing N N 315 PHE N H sing N N 316 PHE N H2 sing N N 317 PHE CA C sing N N 318 PHE CA CB sing N N 319 PHE CA HA sing N N 320 PHE C O doub N N 321 PHE C OXT sing N N 322 PHE CB CG sing N N 323 PHE CB HB2 sing N N 324 PHE CB HB3 sing N N 325 PHE CG CD1 doub Y N 326 PHE CG CD2 sing Y N 327 PHE CD1 CE1 sing Y N 328 PHE CD1 HD1 sing N N 329 PHE CD2 CE2 doub Y N 330 PHE CD2 HD2 sing N N 331 PHE CE1 CZ doub Y N 332 PHE CE1 HE1 sing N N 333 PHE CE2 CZ sing Y N 334 PHE CE2 HE2 sing N N 335 PHE CZ HZ sing N N 336 PHE OXT HXT sing N N 337 PRO N CA sing N N 338 PRO N CD sing N N 339 PRO N H sing N N 340 PRO CA C sing N N 341 PRO CA CB sing N N 342 PRO CA HA sing N N 343 PRO C O doub N N 344 PRO C OXT sing N N 345 PRO CB CG sing N N 346 PRO CB HB2 sing N N 347 PRO CB HB3 sing N N 348 PRO CG CD sing N N 349 PRO CG HG2 sing N N 350 PRO CG HG3 sing N N 351 PRO CD HD2 sing N N 352 PRO CD HD3 sing N N 353 PRO OXT HXT sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 THR N CA sing N N 368 THR N H sing N N 369 THR N H2 sing N N 370 THR CA C sing N N 371 THR CA CB sing N N 372 THR CA HA sing N N 373 THR C O doub N N 374 THR C OXT sing N N 375 THR CB OG1 sing N N 376 THR CB CG2 sing N N 377 THR CB HB sing N N 378 THR OG1 HG1 sing N N 379 THR CG2 HG21 sing N N 380 THR CG2 HG22 sing N N 381 THR CG2 HG23 sing N N 382 THR OXT HXT sing N N 383 TRP N CA sing N N 384 TRP N H sing N N 385 TRP N H2 sing N N 386 TRP CA C sing N N 387 TRP CA CB sing N N 388 TRP CA HA sing N N 389 TRP C O doub N N 390 TRP C OXT sing N N 391 TRP CB CG sing N N 392 TRP CB HB2 sing N N 393 TRP CB HB3 sing N N 394 TRP CG CD1 doub Y N 395 TRP CG CD2 sing Y N 396 TRP CD1 NE1 sing Y N 397 TRP CD1 HD1 sing N N 398 TRP CD2 CE2 doub Y N 399 TRP CD2 CE3 sing Y N 400 TRP NE1 CE2 sing Y N 401 TRP NE1 HE1 sing N N 402 TRP CE2 CZ2 sing Y N 403 TRP CE3 CZ3 doub Y N 404 TRP CE3 HE3 sing N N 405 TRP CZ2 CH2 doub Y N 406 TRP CZ2 HZ2 sing N N 407 TRP CZ3 CH2 sing Y N 408 TRP CZ3 HZ3 sing N N 409 TRP CH2 HH2 sing N N 410 TRP OXT HXT sing N N 411 TYR N CA sing N N 412 TYR N H sing N N 413 TYR N H2 sing N N 414 TYR CA C sing N N 415 TYR CA CB sing N N 416 TYR CA HA sing N N 417 TYR C O doub N N 418 TYR C OXT sing N N 419 TYR CB CG sing N N 420 TYR CB HB2 sing N N 421 TYR CB HB3 sing N N 422 TYR CG CD1 doub Y N 423 TYR CG CD2 sing Y N 424 TYR CD1 CE1 sing Y N 425 TYR CD1 HD1 sing N N 426 TYR CD2 CE2 doub Y N 427 TYR CD2 HD2 sing N N 428 TYR CE1 CZ doub Y N 429 TYR CE1 HE1 sing N N 430 TYR CE2 CZ sing Y N 431 TYR CE2 HE2 sing N N 432 TYR CZ OH sing N N 433 TYR OH HH sing N N 434 TYR OXT HXT sing N N 435 VAL N CA sing N N 436 VAL N H sing N N 437 VAL N H2 sing N N 438 VAL CA C sing N N 439 VAL CA CB sing N N 440 VAL CA HA sing N N 441 VAL C O doub N N 442 VAL C OXT sing N N 443 VAL CB CG1 sing N N 444 VAL CB CG2 sing N N 445 VAL CB HB sing N N 446 VAL CG1 HG11 sing N N 447 VAL CG1 HG12 sing N N 448 VAL CG1 HG13 sing N N 449 VAL CG2 HG21 sing N N 450 VAL CG2 HG22 sing N N 451 VAL CG2 HG23 sing N N 452 VAL OXT HXT sing N N 453 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine" J1C 3 'ACETATE ION' ACT 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3UDE _pdbx_initial_refinement_model.details 'PDB Entry 3UDE' #