HEADER TRANSFERASE 31-OCT-11 3UER TITLE CRYSTAL STRUCTURE OF AMYLOSUCRASE FROM DEINOCOCCUS GEOTHERMALIS IN TITLE 2 COMPLEX WITH TURANOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOSUCRASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS GEOTHERMALIS; SOURCE 3 ORGANISM_TAXID: 319795; SOURCE 4 STRAIN: DSM 11300; SOURCE 5 GENE: DGAS, DGEO_0572; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P3 KEYWDS ALPHA/BETA-BARREL, CARBOHYDRATE, TRANSFERASE, GLUCOSYLTRANSFERASE, KEYWDS 2 GLYCOSIDE HYDROLASE, THERMOSTABILITY, AMYLOSE SYNTHESIS, SUCROSE KEYWDS 3 ISOMERIZATION EXPDTA X-RAY DIFFRACTION AUTHOR F.GUERIN,S.PIZZUT-SERIN,G.POTOCKI-VERONESE,V.GUILLET,L.MOUREY, AUTHOR 2 M.REMAUD-SIMEON,I.ANDRE,S.TRANIER REVDAT 4 28-FEB-24 3UER 1 HETSYN REVDAT 3 29-JUL-20 3UER 1 COMPND REMARK SEQADV HET REVDAT 3 2 1 HETNAM FORMUL LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 14-MAR-12 3UER 1 JRNL REVDAT 1 11-JAN-12 3UER 0 JRNL AUTH F.GUERIN,S.BARBE,S.PIZZUT-SERIN,G.POTOCKI-VERONESE, JRNL AUTH 2 D.GUIEYSSE,V.GUILLET,P.MONSAN,L.MOUREY,M.REMAUD-SIMEON, JRNL AUTH 3 I.ANDRE,S.TRANIER JRNL TITL STRUCTURAL INVESTIGATION OF THE THERMOSTABILITY AND PRODUCT JRNL TITL 2 SPECIFICITY OF AMYLOSUCRASE FROM THE BACTERIUM DEINOCOCCUS JRNL TITL 3 GEOTHERMALIS. JRNL REF J.BIOL.CHEM. V. 287 6642 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22210773 JRNL DOI 10.1074/JBC.M111.322917 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2646 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5097 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.821 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5372 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7334 ; 1.918 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 670 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;33.667 ;22.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;13.671 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;16.725 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 794 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4215 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3292 ; 1.164 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5258 ; 2.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2080 ; 3.227 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2074 ; 4.823 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39319 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 63.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 285.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.36500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.21000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.36500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.21000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.66000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.36500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.21000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.66000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.36500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.21000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -57.66000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 895 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1042 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1143 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 647 REMARK 465 ALA A 648 REMARK 465 PRO A 649 REMARK 465 ALA A 650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 3 CE NZ REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 GLU A 40 CD OE1 OE2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 234 CD OE1 OE2 REMARK 470 GLU A 235 CD OE1 OE2 REMARK 470 GLU A 238 CB CG CD OE1 OE2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 HIS A 343 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 344 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 444 CG1 CG2 REMARK 470 ARG A 471 NE CZ NH1 NH2 REMARK 470 ARG A 477 CZ NH1 NH2 REMARK 470 GLU A 514 OE1 OE2 REMARK 470 ARG A 610 CZ NH1 NH2 REMARK 470 HIS A 616 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 618 CD OE1 NE2 REMARK 470 ARG A 620 CD NE CZ NH1 NH2 REMARK 470 ARG A 627 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 630 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 585 O HOH A 916 1.62 REMARK 500 O GLU A 240 O HOH A 1183 2.02 REMARK 500 OH TYR A 34 NH1 ARG A 315 2.07 REMARK 500 NH1 ARG A 435 O HOH A 1138 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 405 CG GLU A 405 CD 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 308 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 308 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 315 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 341 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 341 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 478 NE - CZ - NH1 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 102 15.57 -150.40 REMARK 500 ASN A 136 24.29 -148.19 REMARK 500 PHE A 248 -126.16 -99.08 REMARK 500 LEU A 338 -68.53 -109.58 REMARK 500 ALA A 342 -148.65 -122.74 REMARK 500 ASP A 397 170.13 -59.38 REMARK 500 ASN A 505 134.20 -36.67 REMARK 500 SER A 624 -175.35 -61.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UCQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO FORM OF AMYLOSUCRASE FROM DEINOCOCCUS REMARK 900 GEOTHERMALIS DBREF 3UER A 1 650 UNP Q1J0W0 Q1J0W0_DEIGD 1 650 SEQADV 3UER GLY A -4 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UER PRO A -3 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UER LEU A -2 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UER GLY A -1 UNP Q1J0W0 EXPRESSION TAG SEQADV 3UER SER A 0 UNP Q1J0W0 EXPRESSION TAG SEQRES 1 A 655 GLY PRO LEU GLY SER MET LEU LYS ASP VAL LEU THR SER SEQRES 2 A 655 GLU LEU ALA ALA GLN VAL ARG ASP ALA PHE ASP ASP ASP SEQRES 3 A 655 ARG ASP ALA GLU THR PHE LEU LEU ARG LEU GLU ARG TYR SEQRES 4 A 655 GLY GLU ASP LEU TRP GLU SER LEU ARG ALA VAL TYR GLY SEQRES 5 A 655 ASP GLN VAL ARG ALA LEU PRO GLY ARG LEU LEU GLU VAL SEQRES 6 A 655 MET LEU HIS ALA TYR HIS ALA ARG PRO ALA GLU LEU ARG SEQRES 7 A 655 ARG LEU ASP GLU ALA ARG LEU LEU ARG PRO ASP TRP LEU SEQRES 8 A 655 GLN ARG PRO GLU MET VAL GLY TYR VAL ALA TYR THR ASP SEQRES 9 A 655 ARG PHE ALA GLY THR LEU LYS GLY VAL GLU GLU ARG LEU SEQRES 10 A 655 ASP TYR LEU GLU GLY LEU GLY VAL LYS TYR LEU HIS LEU SEQRES 11 A 655 MET PRO LEU LEU ARG PRO ARG GLU GLY GLU ASN ASP GLY SEQRES 12 A 655 GLY TYR ALA VAL GLN ASP TYR ARG ALA VAL ARG PRO ASP SEQRES 13 A 655 LEU GLY THR MET ASP ASP LEU SER ALA LEU ALA ARG ALA SEQRES 14 A 655 LEU ARG GLY ARG GLY ILE SER LEU VAL LEU ASP LEU VAL SEQRES 15 A 655 LEU ASN HIS VAL ALA ARG GLU HIS ALA TRP ALA GLN LYS SEQRES 16 A 655 ALA ARG ALA GLY ASP PRO LYS TYR ARG ALA TYR PHE HIS SEQRES 17 A 655 LEU PHE PRO ASP ARG ARG GLY PRO ASP ALA PHE GLU ALA SEQRES 18 A 655 THR LEU PRO GLU ILE PHE PRO ASP PHE ALA PRO GLY ASN SEQRES 19 A 655 PHE SER TRP ASP GLU GLU ILE GLY GLU GLY GLU GLY GLY SEQRES 20 A 655 TRP VAL TRP THR THR PHE ASN SER TYR GLN TRP ASP LEU SEQRES 21 A 655 ASN TRP ALA ASN PRO ASP VAL PHE LEU GLU PHE VAL ASP SEQRES 22 A 655 ILE ILE LEU TYR LEU ALA ASN ARG GLY VAL GLU VAL PHE SEQRES 23 A 655 ARG LEU ASP ALA ILE ALA PHE ILE TRP LYS ARG LEU GLY SEQRES 24 A 655 THR ASP CYS GLN ASN GLN PRO GLU VAL HIS HIS LEU THR SEQRES 25 A 655 ARG ALA LEU ARG ALA ALA ALA ARG ILE VAL ALA PRO ALA SEQRES 26 A 655 VAL ALA PHE LYS ALA GLU ALA ILE VAL ALA PRO ALA ASP SEQRES 27 A 655 LEU ILE HIS TYR LEU GLY THR ARG ALA HIS HIS GLY LYS SEQRES 28 A 655 VAL SER ASP MET ALA TYR HIS ASN SER LEU MET VAL GLN SEQRES 29 A 655 LEU TRP SER SER LEU ALA SER ARG ASN THR ARG LEU PHE SEQRES 30 A 655 GLU GLU ALA LEU ARG ALA PHE PRO PRO LYS PRO THR SER SEQRES 31 A 655 THR THR TRP GLY LEU TYR VAL ARG CYS HIS ASP ASP ILE SEQRES 32 A 655 GLY TRP ALA ILE SER ASP GLU ASP ALA ALA ARG ALA GLY SEQRES 33 A 655 LEU ASN GLY ALA ALA HIS ARG HIS PHE LEU SER ASP PHE SEQRES 34 A 655 TYR SER GLY GLN PHE PRO GLY SER PHE ALA ARG GLY LEU SEQRES 35 A 655 VAL PHE GLN TYR ASN PRO VAL ASN GLY ASP ARG ARG ILE SEQRES 36 A 655 SER GLY SER ALA ALA SER LEU ALA GLY LEU GLU ALA ALA SEQRES 37 A 655 LEU GLU THR GLY ASP PRO GLY ARG ILE GLU ASP ALA VAL SEQRES 38 A 655 ARG ARG LEU LEU LEU LEU HIS THR VAL ILE LEU GLY PHE SEQRES 39 A 655 GLY GLY VAL PRO LEU LEU TYR MET GLY ASP GLU LEU ALA SEQRES 40 A 655 LEU LEU ASN ASP TYR ALA PHE GLU ASP VAL PRO GLU HIS SEQRES 41 A 655 ALA PRO ASP ASN ARG TRP VAL HIS ARG PRO GLN MET ASP SEQRES 42 A 655 TRP ALA LEU ALA GLU ARG VAL ARG GLN GLU PRO SER SER SEQRES 43 A 655 PRO ALA GLY ARG VAL ASN THR GLY LEU ARG HIS LEU LEU SEQRES 44 A 655 ARG VAL ARG ARG ASP THR PRO GLN LEU HIS ALA SER ILE SEQRES 45 A 655 GLU SER GLN VAL LEU PRO SER PRO ASP SER ARG ALA LEU SEQRES 46 A 655 LEU LEU ARG ARG ASP HIS PRO LEU GLY GLY MET VAL GLN SEQRES 47 A 655 VAL TYR ASN PHE SER GLU GLU THR VAL MET LEU PRO SER SEQRES 48 A 655 HIS VAL LEU ARG ASP VAL LEU GLY ASP HIS VAL GLN ASP SEQRES 49 A 655 ARG LEU SER GLY SER ALA PHE ARG LEU ASP ARG PRO THR SEQRES 50 A 655 VAL ARG LEU GLU GLY TYR ARG ALA LEU TRP LEU THR ALA SEQRES 51 A 655 GLY GLU ALA PRO ALA HET Z9N B 1 12 HET GLC B 2 11 HET FRU C 1 12 HET GLC C 2 11 HETNAM Z9N ALPHA-D-FRUCTOFURANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETSYN Z9N ALPHA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 Z9N C6 H12 O6 FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 FRU C6 H12 O6 FORMUL 4 HOH *394(H2 O) HELIX 1 1 GLY A -4 PHE A 18 1 23 HELIX 2 2 ASP A 20 GLY A 47 1 28 HELIX 3 3 ASP A 48 ALA A 52 5 5 HELIX 4 4 LEU A 53 ARG A 68 1 16 HELIX 5 5 PRO A 69 ARG A 82 1 14 HELIX 6 6 ASP A 84 ARG A 88 5 5 HELIX 7 7 TYR A 97 GLY A 103 1 7 HELIX 8 8 THR A 104 GLU A 110 1 7 HELIX 9 9 ARG A 111 LEU A 118 1 8 HELIX 10 10 ASN A 136 TYR A 140 5 5 HELIX 11 11 PRO A 150 GLY A 153 5 4 HELIX 12 12 THR A 154 ARG A 168 1 15 HELIX 13 13 HIS A 185 GLY A 194 1 10 HELIX 14 14 ASP A 195 ALA A 200 1 6 HELIX 15 15 ARG A 208 ALA A 216 1 9 HELIX 16 16 ASN A 259 ARG A 276 1 18 HELIX 17 17 ALA A 285 ILE A 289 5 5 HELIX 18 18 GLN A 300 ALA A 318 1 19 HELIX 19 19 ALA A 330 ILE A 335 1 6 HELIX 20 20 HIS A 336 LEU A 338 5 3 HELIX 21 21 HIS A 353 ARG A 367 1 15 HELIX 22 22 THR A 369 ALA A 378 1 10 HELIX 23 23 SER A 403 ALA A 410 1 8 HELIX 24 24 ASN A 413 SER A 426 1 14 HELIX 25 25 SER A 453 ALA A 458 1 6 HELIX 26 26 GLY A 459 GLY A 467 1 9 HELIX 27 27 ASP A 468 PHE A 489 1 22 HELIX 28 28 GLY A 498 ALA A 502 5 5 HELIX 29 29 ASP A 506 VAL A 512 5 7 HELIX 30 30 ASP A 518 ARG A 524 5 7 HELIX 31 31 ASP A 528 GLU A 538 1 11 HELIX 32 32 SER A 541 ASP A 559 1 19 HELIX 33 33 THR A 560 HIS A 564 5 5 HELIX 34 34 SER A 606 GLY A 614 1 9 SHEET 1 A 9 GLY A 93 ALA A 96 0 SHEET 2 A 9 TYR A 122 LEU A 125 1 O HIS A 124 N TYR A 94 SHEET 3 A 9 SER A 171 LEU A 176 1 O SER A 171 N LEU A 123 SHEET 4 A 9 VAL A 280 LEU A 283 1 O ARG A 282 N LEU A 176 SHEET 5 A 9 ALA A 322 ALA A 325 1 O LYS A 324 N PHE A 281 SHEET 6 A 9 MET A 350 TYR A 352 1 O MET A 350 N ALA A 325 SHEET 7 A 9 THR A 387 LEU A 390 1 O GLY A 389 N ALA A 351 SHEET 8 A 9 VAL A 492 TYR A 496 1 O LEU A 494 N LEU A 390 SHEET 9 A 9 GLY A 93 ALA A 96 1 N GLY A 93 O PRO A 493 SHEET 1 B 2 LEU A 129 PRO A 131 0 SHEET 2 B 2 VAL A 142 VAL A 148 -1 O GLN A 143 N ARG A 130 SHEET 1 C 2 HIS A 180 ALA A 182 0 SHEET 2 C 2 GLN A 252 ASP A 254 -1 O TRP A 253 N VAL A 181 SHEET 1 D 3 LEU A 204 PHE A 205 0 SHEET 2 D 3 GLY A 242 TRP A 245 -1 O TRP A 243 N PHE A 205 SHEET 3 D 3 PHE A 230 ASP A 233 -1 N ASP A 233 O GLY A 242 SHEET 1 E 2 LEU A 437 ASN A 442 0 SHEET 2 E 2 ASP A 447 SER A 451 -1 O ASP A 447 N ASN A 442 SHEET 1 F 6 GLN A 570 VAL A 571 0 SHEET 2 F 6 ALA A 579 ARG A 584 -1 O ARG A 583 N GLN A 570 SHEET 3 F 6 MET A 591 ASN A 596 -1 O GLN A 593 N LEU A 582 SHEET 4 F 6 ALA A 640 ALA A 645 -1 O LEU A 641 N VAL A 594 SHEET 5 F 6 HIS A 616 ASP A 619 -1 N GLN A 618 O THR A 644 SHEET 6 F 6 ALA A 625 ARG A 627 -1 O PHE A 626 N VAL A 617 SHEET 1 G 2 VAL A 602 PRO A 605 0 SHEET 2 G 2 THR A 632 LEU A 635 -1 O LEU A 635 N VAL A 602 LINK O3 AZ9N B 1 C1 AGLC B 2 1555 1555 1.42 LINK O3 BFRU C 1 C1 BGLC C 2 1555 1555 1.42 CRYST1 104.730 110.420 115.320 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008672 0.00000