HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-NOV-11 3UG2 TITLE CRYSTAL STRUCTURE OF THE MUTATED EGFR KINASE DOMAIN (G719S/T790M) IN TITLE 2 COMPLEX WITH GEFITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 695-1022; COMPND 5 SYNONYM: PROTO-ONCOGENE C-ERBB-1, RECEPTOR TYROSINE-PROTEIN KINASE COMPND 6 ERBB-1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC_HT_C KEYWDS KINASE, TYROSINE-PROTEIN KINASE, ATP BINDING, PHOSPHORYLATION, KEYWDS 2 TRANSMEMBRANE, RECEPTOR, DISEASE MUTATION, CELL CYCLE, DRUG KEYWDS 3 RESISTANCE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.J.PARKER,N.HANDA,S.YOSHIKAWA,M.KUKIMOTO-NIINO,M.SHIROUZU,S.YOKOYAMA REVDAT 4 01-NOV-23 3UG2 1 REMARK SEQADV REVDAT 3 15-OCT-14 3UG2 1 HETNAM REVDAT 2 12-MAR-14 3UG2 1 JRNL REVDAT 1 07-MAR-12 3UG2 0 JRNL AUTH S.YOSHIKAWA,M.KUKIMOTO-NIINO,L.PARKER,N.HANDA,T.TERADA, JRNL AUTH 2 T.FUJIMOTO,Y.TERAZAWA,M.WAKIYAMA,M.SATO,S.SANO,T.KOBAYASHI, JRNL AUTH 3 T.TANAKA,L.CHEN,Z.J.LIU,B.C.WANG,M.SHIROUZU,S.KAWA,K.SEMBA, JRNL AUTH 4 T.YAMAMOTO,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR THE ALTERED DRUG SENSITIVITIES OF JRNL TITL 2 NON-SMALL CELL LUNG CANCER-ASSOCIATED MUTANTS OF HUMAN JRNL TITL 3 EPIDERMAL GROWTH FACTOR RECEPTOR JRNL REF ONCOGENE V. 32 27 2013 JRNL REFN ISSN 0950-9232 JRNL PMID 22349823 JRNL DOI 10.1038/ONC.2012.21 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2437 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3308 ; 2.202 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 6.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;40.655 ;24.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;19.233 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1795 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1104 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1672 ; 0.334 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 1.792 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2410 ; 2.456 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1065 ; 4.374 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 897 ; 5.926 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 45.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 45.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : 0.45000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GS2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M SODIUM CITRATE, 0.1M MES PH 7.1, REMARK 280 5MG/ML PROTEIN, INCUBATED OVERNIGHT AT 4DEG WITH FINAL REMARK 280 CONCENTRATION OF 0.5MM GEFITINIB AND 1% DMSO , VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.83750 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 71.83750 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.83750 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 71.83750 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 71.83750 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 71.83750 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 71.83750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.83750 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 71.83750 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 71.83750 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 71.83750 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 71.83750 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 71.83750 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 71.83750 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 71.83750 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 71.83750 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 71.83750 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 71.83750 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 71.83750 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 71.83750 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 71.83750 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 71.83750 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 71.83750 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 71.83750 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 71.83750 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 71.83750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 71.83750 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 71.83750 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 71.83750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 689 REMARK 465 ALA A 690 REMARK 465 MET A 691 REMARK 465 GLY A 692 REMARK 465 ILE A 693 REMARK 465 ARG A 694 REMARK 465 SER A 695 REMARK 465 GLY A 696 REMARK 465 GLY A 721 REMARK 465 ALA A 722 REMARK 465 PHE A 723 REMARK 465 LEU A 747 REMARK 465 ARG A 748 REMARK 465 GLU A 749 REMARK 465 ALA A 750 REMARK 465 THR A 751 REMARK 465 PRO A 990 REMARK 465 SER A 991 REMARK 465 PRO A 992 REMARK 465 THR A 993 REMARK 465 ASP A 994 REMARK 465 SER A 995 REMARK 465 ASN A 996 REMARK 465 PHE A 997 REMARK 465 TYR A 998 REMARK 465 ARG A 999 REMARK 465 ALA A 1000 REMARK 465 LEU A 1001 REMARK 465 MET A 1002 REMARK 465 ASP A 1003 REMARK 465 GLU A 1004 REMARK 465 PRO A 1019 REMARK 465 GLN A 1020 REMARK 465 GLN A 1021 REMARK 465 GLY A 1022 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 697 CG CD OE1 OE2 REMARK 470 LYS A 713 CG CD CE NZ REMARK 470 LYS A 716 CG CD CE NZ REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 LYS A 737 CG CD CE NZ REMARK 470 LYS A 754 CG CD CE NZ REMARK 470 GLU A 804 CG CD OE1 OE2 REMARK 470 GLU A 865 CG CD OE1 OE2 REMARK 470 LYS A 867 CG CD CE NZ REMARK 470 GLU A 872 CG CD OE1 OE2 REMARK 470 LYS A 875 CG CD CE NZ REMARK 470 LYS A 929 CG CD CE NZ REMARK 470 GLU A 985 CG CD OE1 OE2 REMARK 470 ARG A 986 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 988 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A1006 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 803 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 958 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 958 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A1007 CG - SD - CE ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 702 150.48 -49.92 REMARK 500 THR A 725 97.82 119.48 REMARK 500 ILE A 732 79.02 -118.60 REMARK 500 GLU A 734 -130.81 37.68 REMARK 500 LEU A 782 50.11 -92.59 REMARK 500 ARG A 836 -5.34 71.40 REMARK 500 ASP A 855 80.02 59.62 REMARK 500 ALA A 864 -134.48 48.97 REMARK 500 GLU A 872 -102.68 -85.22 REMARK 500 MET A1007 -1.84 -146.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 LIGAND IRE IS KNOWN AS GEFITINIB. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1023 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EB2 RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN (G719S) REMARK 900 RELATED ID: 2EB3 RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN (L858R) IN COMPLEX WITH AMPPNP REMARK 900 RELATED ID: 3VJN RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN (G719S/T790M) IN COMPLEX WITH AMPPNP REMARK 900 RELATED ID: 3VJO RELATED DB: PDB REMARK 900 WILD-TYPE EGFR KINASE DOMAIN IN COMPLEX WITH AMPPNP REMARK 900 RELATED ID: 3UG1 RELATED DB: PDB REMARK 900 MUTATED EGFR KINASE DOMAIN (G719S/T790M) IN THE APO FORM DBREF 3UG2 A 695 1022 UNP P00533 EGFR_HUMAN 695 1022 SEQADV 3UG2 GLY A 689 UNP P00533 EXPRESSION TAG SEQADV 3UG2 ALA A 690 UNP P00533 EXPRESSION TAG SEQADV 3UG2 MET A 691 UNP P00533 EXPRESSION TAG SEQADV 3UG2 GLY A 692 UNP P00533 EXPRESSION TAG SEQADV 3UG2 ILE A 693 UNP P00533 EXPRESSION TAG SEQADV 3UG2 ARG A 694 UNP P00533 EXPRESSION TAG SEQADV 3UG2 SER A 719 UNP P00533 GLY 719 ENGINEERED MUTATION SEQADV 3UG2 MET A 790 UNP P00533 THR 790 ENGINEERED MUTATION SEQRES 1 A 334 GLY ALA MET GLY ILE ARG SER GLY GLU ALA PRO ASN GLN SEQRES 2 A 334 ALA LEU LEU ARG ILE LEU LYS GLU THR GLU PHE LYS LYS SEQRES 3 A 334 ILE LYS VAL LEU SER SER GLY ALA PHE GLY THR VAL TYR SEQRES 4 A 334 LYS GLY LEU TRP ILE PRO GLU GLY GLU LYS VAL LYS ILE SEQRES 5 A 334 PRO VAL ALA ILE LYS GLU LEU ARG GLU ALA THR SER PRO SEQRES 6 A 334 LYS ALA ASN LYS GLU ILE LEU ASP GLU ALA TYR VAL MET SEQRES 7 A 334 ALA SER VAL ASP ASN PRO HIS VAL CYS ARG LEU LEU GLY SEQRES 8 A 334 ILE CYS LEU THR SER THR VAL GLN LEU ILE MET GLN LEU SEQRES 9 A 334 MET PRO PHE GLY CYS LEU LEU ASP TYR VAL ARG GLU HIS SEQRES 10 A 334 LYS ASP ASN ILE GLY SER GLN TYR LEU LEU ASN TRP CYS SEQRES 11 A 334 VAL GLN ILE ALA LYS GLY MET ASN TYR LEU GLU ASP ARG SEQRES 12 A 334 ARG LEU VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU SEQRES 13 A 334 VAL LYS THR PRO GLN HIS VAL LYS ILE THR ASP PHE GLY SEQRES 14 A 334 LEU ALA LYS LEU LEU GLY ALA GLU GLU LYS GLU TYR HIS SEQRES 15 A 334 ALA GLU GLY GLY LYS VAL PRO ILE LYS TRP MET ALA LEU SEQRES 16 A 334 GLU SER ILE LEU HIS ARG ILE TYR THR HIS GLN SER ASP SEQRES 17 A 334 VAL TRP SER TYR GLY VAL THR VAL TRP GLU LEU MET THR SEQRES 18 A 334 PHE GLY SER LYS PRO TYR ASP GLY ILE PRO ALA SER GLU SEQRES 19 A 334 ILE SER SER ILE LEU GLU LYS GLY GLU ARG LEU PRO GLN SEQRES 20 A 334 PRO PRO ILE CYS THR ILE ASP VAL TYR MET ILE MET VAL SEQRES 21 A 334 LYS CYS TRP MET ILE ASP ALA ASP SER ARG PRO LYS PHE SEQRES 22 A 334 ARG GLU LEU ILE ILE GLU PHE SER LYS MET ALA ARG ASP SEQRES 23 A 334 PRO GLN ARG TYR LEU VAL ILE GLN GLY ASP GLU ARG MET SEQRES 24 A 334 HIS LEU PRO SER PRO THR ASP SER ASN PHE TYR ARG ALA SEQRES 25 A 334 LEU MET ASP GLU GLU ASP MET ASP ASP VAL VAL ASP ALA SEQRES 26 A 334 ASP GLU TYR LEU ILE PRO GLN GLN GLY HET IRE A 1 31 HET MES A1023 12 HETNAM IRE GEFITINIB HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 IRE C22 H24 CL F N4 O3 FORMUL 3 MES C6 H13 N O4 S FORMUL 4 HOH *55(H2 O) HELIX 1 1 LYS A 708 THR A 710 5 3 HELIX 2 2 PRO A 753 SER A 768 1 16 HELIX 3 3 CYS A 797 LYS A 806 1 10 HELIX 4 4 ASP A 807 ILE A 809 5 3 HELIX 5 5 GLY A 810 ARG A 831 1 22 HELIX 6 6 ALA A 839 ARG A 841 5 3 HELIX 7 7 PRO A 877 MET A 881 5 5 HELIX 8 8 ALA A 882 ARG A 889 1 8 HELIX 9 9 THR A 892 THR A 909 1 18 HELIX 10 10 PRO A 919 GLY A 930 1 12 HELIX 11 11 THR A 940 CYS A 950 1 11 HELIX 12 12 ASP A 954 ARG A 958 5 5 HELIX 13 13 LYS A 960 ARG A 973 1 14 HELIX 14 14 ASP A 974 LEU A 979 1 6 HELIX 15 15 GLY A 983 MET A 987 5 5 HELIX 16 16 ASP A 1012 TYR A 1016 5 5 SHEET 1 A 5 PHE A 712 SER A 719 0 SHEET 2 A 5 VAL A 726 TRP A 731 -1 O VAL A 726 N LEU A 718 SHEET 3 A 5 ILE A 740 LYS A 745 -1 O ILE A 740 N TRP A 731 SHEET 4 A 5 GLN A 787 GLN A 791 -1 O MET A 790 N ALA A 743 SHEET 5 A 5 LEU A 777 CYS A 781 -1 N LEU A 778 O ILE A 789 SHEET 1 B 2 LEU A 833 VAL A 834 0 SHEET 2 B 2 LYS A 860 LEU A 861 -1 O LYS A 860 N VAL A 834 SHEET 1 C 2 VAL A 843 THR A 847 0 SHEET 2 C 2 HIS A 850 ILE A 853 -1 O HIS A 850 N THR A 847 SHEET 1 D 2 TYR A 869 HIS A 870 0 SHEET 2 D 2 ILE A 890 TYR A 891 -1 O TYR A 891 N TYR A 869 SITE 1 AC1 10 HOH A 36 SER A 719 ALA A 743 LYS A 745 SITE 2 AC1 10 LEU A 788 MET A 790 GLN A 791 MET A 793 SITE 3 AC1 10 PRO A 794 ASP A 800 SITE 1 AC2 6 ARG A 841 VAL A 876 PRO A 877 ILE A 878 SITE 2 AC2 6 LYS A 879 TRP A 880 CRYST1 143.675 143.675 143.675 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006960 0.00000