HEADER MEMBRANE PROTEIN 02-NOV-11 3UG9 TITLE CRYSTAL STRUCTURE OF THE CLOSED STATE OF CHANNELRHODOPSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEAL-TYPE OPSIN 1, ARCHAEAL-TYPE OPSIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHANNELOPSIN-1, CHLAMYOPSIN 4 LIGHT-GATED ION CHANNEL, COMPND 5 RETINAL BINDING PROTEIN, SENSORY OPSIN B; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CHIMERA PROTEIN OF ARCHAEAL-TYPE OPSIN 1 (UNP RESIDUES COMPND 8 24-245) AND ARCHAEAL-TYPE OPSIN 2 (UNP RESIDUES 207-309) FROM COMPND 9 CHLAMYDOMONAS REINHARDTII SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 GENE: ACOP1, ACOP2, CHLREDRAFT_182032, COP4, CSOB; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS MICROBIALRHODOPSIN, SEVEN-TRANSMEMBRANE, LIGHT-GATED CATION CHANNEL, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.E.KATO,R.ISHITANI,O.NUREKI REVDAT 6 20-NOV-24 3UG9 1 REMARK SEQADV LINK REVDAT 5 09-AUG-17 3UG9 1 SOURCE REMARK REVDAT 4 27-JUN-12 3UG9 1 TITLE REVDAT 3 22-FEB-12 3UG9 1 JRNL REVDAT 2 01-FEB-12 3UG9 1 JRNL REVDAT 1 25-JAN-12 3UG9 0 JRNL AUTH H.E.KATO,F.ZHANG,O.YIZHAR,C.RAMAKRISHNAN,T.NISHIZAWA, JRNL AUTH 2 K.HIRATA,J.ITO,Y.AITA,T.TSUKAZAKI,S.HAYASHI,P.HEGEMANN, JRNL AUTH 3 A.D.MATURANA,R.ISHITANI,K.DEISSEROTH,O.NUREKI JRNL TITL CRYSTAL STRUCTURE OF THE CHANNELRHODOPSIN LIGHT-GATED CATION JRNL TITL 2 CHANNEL JRNL REF NATURE V. 482 369 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22266941 JRNL DOI 10.1038/NATURE10870 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 16709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5733 - 5.2610 0.98 1350 151 0.2276 0.2258 REMARK 3 2 5.2610 - 4.1777 0.99 1269 141 0.1942 0.2441 REMARK 3 3 4.1777 - 3.6502 0.99 1278 143 0.1917 0.2418 REMARK 3 4 3.6502 - 3.3167 0.99 1258 139 0.1835 0.2275 REMARK 3 5 3.3167 - 3.0791 0.98 1249 139 0.1964 0.2578 REMARK 3 6 3.0791 - 2.8976 0.99 1247 138 0.1922 0.2912 REMARK 3 7 2.8976 - 2.7526 0.98 1250 138 0.1801 0.2731 REMARK 3 8 2.7526 - 2.6328 0.98 1224 137 0.1757 0.2342 REMARK 3 9 2.6328 - 2.5314 0.98 1238 137 0.2032 0.2422 REMARK 3 10 2.5314 - 2.4441 0.98 1207 134 0.2438 0.3349 REMARK 3 11 2.4441 - 2.3677 0.99 1245 139 0.2778 0.3384 REMARK 3 12 2.3677 - 2.3000 0.98 1222 136 0.2832 0.3226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 37.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.780 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.92620 REMARK 3 B22 (A**2) : -15.24610 REMARK 3 B33 (A**2) : 12.31990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2329 REMARK 3 ANGLE : 1.306 3151 REMARK 3 CHIRALITY : 0.086 356 REMARK 3 PLANARITY : 0.006 382 REMARK 3 DIHEDRAL : 19.077 799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 49:156) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9067 21.1278 17.7379 REMARK 3 T TENSOR REMARK 3 T11: 0.2890 T22: 0.3128 REMARK 3 T33: 0.5556 T12: -0.0090 REMARK 3 T13: -0.0368 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.3306 L22: 0.2033 REMARK 3 L33: 0.3972 L12: -0.0954 REMARK 3 L13: -0.3052 L23: -0.1755 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.0048 S13: -0.2926 REMARK 3 S21: 0.0521 S22: -0.0444 S23: -0.7804 REMARK 3 S31: 0.0152 S32: 0.0249 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 157:241) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2448 41.3803 13.7198 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.3025 REMARK 3 T33: 0.2196 T12: -0.0281 REMARK 3 T13: -0.0383 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.3886 L22: 0.1729 REMARK 3 L33: 0.1863 L12: -0.1300 REMARK 3 L13: -0.2106 L23: -0.0415 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.1264 S13: 0.0351 REMARK 3 S21: -0.2427 S22: 0.0847 S23: 0.0780 REMARK 3 S31: -0.0422 S32: 0.0053 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 242:342) OR CHAIN 'A' AND REMARK 3 (RESSEQ 401) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0656 46.9462 7.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.3281 T22: 0.2847 REMARK 3 T33: 0.2553 T12: -0.0612 REMARK 3 T13: 0.0509 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.1548 L22: 0.3542 REMARK 3 L33: 0.1438 L12: 0.1367 REMARK 3 L13: 0.4471 L23: -0.0759 REMARK 3 S TENSOR REMARK 3 S11: -0.1569 S12: 0.1671 S13: 0.1571 REMARK 3 S21: -0.2838 S22: 0.1859 S23: 0.0727 REMARK 3 S31: -0.0590 S32: 0.0812 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 500 DME, 100MM NA CITRATE REMARK 280 (PH6.0), 100MM MGCL2, 100MM NACL, 100MM (NH4)2SO4, LIPID CUBIC REMARK 280 PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.02450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.02450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.73550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.55700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.73550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.55700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.02450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.73550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.55700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.02450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.73550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.55700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.02450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 24 REMARK 465 THR A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 ASP A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 VAL A 31 REMARK 465 PRO A 32 REMARK 465 VAL A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 GLN A 36 REMARK 465 ASP A 37 REMARK 465 GLY A 38 REMARK 465 PRO A 39 REMARK 465 ASP A 40 REMARK 465 TYR A 41 REMARK 465 VAL A 42 REMARK 465 PHE A 43 REMARK 465 HIS A 44 REMARK 465 ARG A 45 REMARK 465 ALA A 46 REMARK 465 HIS A 47 REMARK 465 GLU A 48 REMARK 465 GLY A 110 REMARK 465 TYR A 111 REMARK 465 GLN A 112 REMARK 465 THR A 113 REMARK 465 TRP A 114 REMARK 465 LYS A 115 REMARK 465 SER A 116 REMARK 465 THR A 117 REMARK 465 ASN A 327 REMARK 465 ILE A 328 REMARK 465 GLY A 329 REMARK 465 GLY A 330 REMARK 465 THR A 331 REMARK 465 GLU A 332 REMARK 465 ALA A 343 REMARK 465 GLU A 344 REMARK 465 ALA A 345 REMARK 465 GLY A 346 REMARK 465 ALA A 347 REMARK 465 VAL A 348 REMARK 465 SER A 349 REMARK 465 SER A 350 REMARK 465 GLU A 351 REMARK 465 ASP A 352 REMARK 465 LEU A 353 REMARK 465 TYR A 354 REMARK 465 PHE A 355 REMARK 465 GLN A 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 MET A 50 CG SD CE REMARK 470 LEU A 51 CG CD1 CD2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 CYS A 118 SG REMARK 470 ASN A 182 CG OD1 ND2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 TYR A 211 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ARG A 246 NE CZ NH1 NH2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ILE A 333 CG1 CG2 CD1 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ASP A 341 CG OD1 OD2 REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 176 56.91 -142.31 REMARK 500 TYR A 184 121.74 -37.22 REMARK 500 ASN A 185 -168.97 -120.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 181 ASN A 182 149.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 501 REMARK 610 OLA A 502 REMARK 610 OLA A 503 REMARK 610 OLA A 504 REMARK 610 OLA A 505 REMARK 610 OLA A 506 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLA A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UGA RELATED DB: PDB DBREF 3UG9 A 24 245 UNP Q93WP2 Q93WP2_CHLRE 24 245 DBREF 3UG9 A 246 348 UNP Q8RUT8 Q8RUT8_CHLRE 207 309 SEQADV 3UG9 SER A 349 UNP Q8RUT8 EXPRESSION TAG SEQADV 3UG9 SER A 350 UNP Q8RUT8 EXPRESSION TAG SEQADV 3UG9 GLU A 351 UNP Q8RUT8 EXPRESSION TAG SEQADV 3UG9 ASP A 352 UNP Q8RUT8 EXPRESSION TAG SEQADV 3UG9 LEU A 353 UNP Q8RUT8 EXPRESSION TAG SEQADV 3UG9 TYR A 354 UNP Q8RUT8 EXPRESSION TAG SEQADV 3UG9 PHE A 355 UNP Q8RUT8 EXPRESSION TAG SEQADV 3UG9 GLN A 356 UNP Q8RUT8 EXPRESSION TAG SEQRES 1 A 333 SER THR GLY SER ASP ALA THR VAL PRO VAL ALA THR GLN SEQRES 2 A 333 ASP GLY PRO ASP TYR VAL PHE HIS ARG ALA HIS GLU ARG SEQRES 3 A 333 MET LEU PHE GLN THR SER TYR THR LEU GLU ASN ASN GLY SEQRES 4 A 333 SER VAL ILE CYS ILE PRO ASN ASN GLY GLN CYS PHE CYS SEQRES 5 A 333 LEU ALA TRP LEU LYS SER ASN GLY THR ASN ALA GLU LYS SEQRES 6 A 333 LEU ALA ALA ASN ILE LEU GLN TRP ILE THR PHE ALA LEU SEQRES 7 A 333 SER ALA LEU CYS LEU MET PHE TYR GLY TYR GLN THR TRP SEQRES 8 A 333 LYS SER THR CYS GLY TRP GLU GLU ILE TYR VAL ALA THR SEQRES 9 A 333 ILE GLU MET ILE LYS PHE ILE ILE GLU TYR PHE HIS GLU SEQRES 10 A 333 PHE ASP GLU PRO ALA VAL ILE TYR SER SER ASN GLY ASN SEQRES 11 A 333 LYS THR VAL TRP LEU ARG TYR ALA GLU TRP LEU LEU THR SEQRES 12 A 333 CYS PRO VAL ILE LEU ILE HIS LEU SER ASN LEU THR GLY SEQRES 13 A 333 LEU ALA ASN ASP TYR ASN LYS ARG THR MET GLY LEU LEU SEQRES 14 A 333 VAL SER ASP ILE GLY THR ILE VAL TRP GLY THR THR ALA SEQRES 15 A 333 ALA LEU SER LYS GLY TYR VAL ARG VAL ILE PHE PHE LEU SEQRES 16 A 333 MET GLY LEU CYS TYR GLY ILE TYR THR PHE PHE ASN ALA SEQRES 17 A 333 ALA LYS VAL TYR ILE GLU ALA TYR HIS THR VAL PRO LYS SEQRES 18 A 333 GLY ARG CYS ARG GLN VAL VAL THR GLY MET ALA TRP LEU SEQRES 19 A 333 PHE PHE VAL SER TRP GLY MET PHE PRO ILE LEU PHE ILE SEQRES 20 A 333 LEU GLY PRO GLU GLY PHE GLY VAL LEU SER VAL TYR GLY SEQRES 21 A 333 SER THR VAL GLY HIS THR ILE ILE ASP LEU MET SER LYS SEQRES 22 A 333 ASN CYS TRP GLY LEU LEU GLY HIS TYR LEU ARG VAL LEU SEQRES 23 A 333 ILE HIS GLU HIS ILE LEU ILE HIS GLY ASP ILE ARG LYS SEQRES 24 A 333 THR THR LYS LEU ASN ILE GLY GLY THR GLU ILE GLU VAL SEQRES 25 A 333 GLU THR LEU VAL GLU ASP GLU ALA GLU ALA GLY ALA VAL SEQRES 26 A 333 SER SER GLU ASP LEU TYR PHE GLN HET RET A 401 20 HET OLA A 501 13 HET OLA A 502 14 HET OLA A 503 9 HET OLA A 504 13 HET OLA A 505 10 HET OLA A 506 6 HETNAM RET RETINAL HETNAM OLA OLEIC ACID FORMUL 2 RET C20 H28 O FORMUL 3 OLA 6(C18 H34 O2) FORMUL 9 HOH *43(H2 O) HELIX 1 1 CYS A 75 LYS A 80 1 6 HELIX 2 2 THR A 84 TYR A 109 1 26 HELIX 3 3 GLY A 119 GLU A 140 1 22 HELIX 4 4 VAL A 156 SER A 175 1 20 HELIX 5 5 ASN A 185 SER A 208 1 24 HELIX 6 6 LYS A 209 VAL A 242 1 34 HELIX 7 7 GLY A 245 GLY A 272 1 28 HELIX 8 8 SER A 280 LYS A 296 1 17 HELIX 9 9 LYS A 296 GLY A 318 1 23 SHEET 1 A 2 THR A 57 GLU A 59 0 SHEET 2 A 2 VAL A 64 CYS A 66 -1 O VAL A 64 N GLU A 59 SHEET 1 B 2 ILE A 147 TYR A 148 0 SHEET 2 B 2 LYS A 154 THR A 155 -1 O THR A 155 N ILE A 147 SHEET 1 C 2 ILE A 320 THR A 324 0 SHEET 2 C 2 VAL A 335 VAL A 339 -1 O VAL A 335 N THR A 324 SSBOND 1 CYS A 66 CYS A 66 1555 3555 2.03 SSBOND 2 CYS A 73 CYS A 75 1555 3555 2.06 LINK NZ LYS A 296 C15 RET A 401 1555 1555 1.47 CISPEP 1 GLU A 143 PRO A 144 0 1.25 SITE 1 AC1 8 TRP A 163 CYS A 167 THR A 198 GLY A 202 SITE 2 AC1 8 TRP A 262 PHE A 265 SER A 295 LYS A 296 SITE 1 AC2 6 TRP A 120 LYS A 186 GLY A 190 CYS A 222 SITE 2 AC2 6 TYR A 223 TYR A 226 SITE 1 AC3 10 ILE A 135 HIS A 139 ASP A 142 GLU A 143 SITE 2 AC3 10 PRO A 144 ALA A 145 LEU A 158 ALA A 161 SITE 3 AC3 10 LEU A 165 THR A 204 SITE 1 AC4 1 HIS A 139 SITE 1 AC5 5 GLY A 210 ARG A 213 PHE A 217 GLY A 275 SITE 2 AC5 5 PHE A 276 SITE 1 AC6 1 GLY A 287 SITE 1 AC7 1 ILE A 93 CRYST1 59.471 139.114 90.049 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011105 0.00000