HEADER CYTOKINE 02-NOV-11 3UGN OBSLTE 09-MAY-12 3UGN 4EN0 TITLE CRYSTAL STRUCTURE OF LIGHT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 14; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 5 SYNONYM: HERPES VIRUS ENTRY MEDIATOR LIGAND, HVEM-L, HERPESVIRUS COMPND 6 ENTRY MEDIATOR LIGAND, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY COMPND 7 MEMBER 14, MEMBRANE FORM, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY COMPND 8 MEMBER 14, SOLUBLE FORM; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HVEML, LIGHT, TNFSF14, UNQ391/PRO726; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMT/BIP/V5-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, JELLY-ROLL, IMMUNITY, TNF SUPERFAMILY, KEYWDS 3 HVEM, DCR3, N-GLYCOSYLATION, MEMBRANE, SECRETED PROTEIN, CYTOKINE, KEYWDS 4 ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NETWORK, IFN EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAN,W.LIU,Y.PATSKOVSKY,U.A.RAMAGOPAL,J.B.BONANNO,S.G.NATHENSON, AUTHOR 2 S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC), AUTHOR 3 ATOMS-TO-ANIMALS: THE IMMUNE FUNCTION NETWORK (IFN) REVDAT 3 09-MAY-12 3UGN 1 OBSLTE REVDAT 2 28-DEC-11 3UGN 1 AUTHOR REVDAT 1 21-DEC-11 3UGN 0 JRNL AUTH C.ZHAN,W.LIU,Y.PATSKOVSKY,U.A.RAMAGOPAL,J.B.BONANNO, JRNL AUTH 2 S.G.NATHENSON,S.C.ALMO, JRNL AUTH 3 NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM JRNL TITL CRYSTAL STRUCTURE OF LIGHT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 18646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1291 - 4.9532 1.00 2663 144 0.2411 0.3084 REMARK 3 2 4.9532 - 3.9321 1.00 2558 130 0.1898 0.2517 REMARK 3 3 3.9321 - 3.4353 1.00 2538 119 0.2274 0.2591 REMARK 3 4 3.4353 - 3.1213 1.00 2490 156 0.2571 0.2912 REMARK 3 5 3.1213 - 2.8976 1.00 2496 149 0.2815 0.3279 REMARK 3 6 2.8976 - 2.7268 1.00 2518 118 0.3282 0.3668 REMARK 3 7 2.7268 - 2.5902 0.97 2427 140 0.3592 0.4033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 63.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.680 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -20.32130 REMARK 3 B22 (A**2) : 5.82120 REMARK 3 B33 (A**2) : 14.50010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3403 REMARK 3 ANGLE : 1.166 4620 REMARK 3 CHIRALITY : 0.073 514 REMARK 3 PLANARITY : 0.005 586 REMARK 3 DIHEDRAL : 18.005 1195 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 11:158) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9267 28.0134 13.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.4228 T22: 0.6520 REMARK 3 T33: 0.3416 T12: -0.2857 REMARK 3 T13: -0.2081 T23: 0.2970 REMARK 3 L TENSOR REMARK 3 L11: 1.8681 L22: 2.9813 REMARK 3 L33: 3.4135 L12: 0.5219 REMARK 3 L13: 0.5424 L23: -0.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.3316 S12: 0.4878 S13: 0.5088 REMARK 3 S21: -0.8023 S22: 0.5114 S23: 0.5386 REMARK 3 S31: -0.1077 S32: 0.4770 S33: -0.0019 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain B and resid 11:158) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2673 14.5484 31.0104 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.5547 REMARK 3 T33: 0.2787 T12: 0.1104 REMARK 3 T13: -0.0170 T23: 0.2662 REMARK 3 L TENSOR REMARK 3 L11: 2.5284 L22: 4.5589 REMARK 3 L33: 3.4342 L12: 2.4244 REMARK 3 L13: -0.4707 L23: 0.4807 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: -0.4290 S13: -0.2916 REMARK 3 S21: 0.5140 S22: 0.4291 S23: 0.2828 REMARK 3 S31: 0.1012 S32: 0.4586 S33: -0.2833 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain C and resid 11:158) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6183 14.0208 15.7096 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.4606 REMARK 3 T33: 0.8558 T12: -0.2613 REMARK 3 T13: -0.3124 T23: 0.3502 REMARK 3 L TENSOR REMARK 3 L11: 3.2610 L22: 2.8466 REMARK 3 L33: 3.4907 L12: -0.6610 REMARK 3 L13: -0.7342 L23: 0.0731 REMARK 3 S TENSOR REMARK 3 S11: -0.4145 S12: 0.3949 S13: 0.1424 REMARK 3 S21: -0.5471 S22: 0.2853 S23: 1.4481 REMARK 3 S31: 0.4546 S32: -0.0813 S33: -0.1175 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-11. REMARK 100 THE RCSB ID CODE IS RCSB068730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18664 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QE3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M NAH2PO4, 0.14M K2HPO4 AND 0.2M REMARK 280 NDSB-211, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 290.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.19100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.99050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.19100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.99050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.99050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.19100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.99050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.34950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.19100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 74 REMARK 465 SER A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80 REMARK 465 HIS A 81 REMARK 465 GLY A 82 REMARK 465 LEU A 83 REMARK 465 ILE A 84 REMARK 465 GLN A 85 REMARK 465 GLU A 86 REMARK 465 ARG A 87 REMARK 465 ARG A 88 REMARK 465 SER A 89 REMARK 465 HIS A 90 REMARK 465 GLU A 91 REMARK 465 VAL A 92 REMARK 465 SER A 192 REMARK 465 SER A 193 REMARK 465 SER A 194 REMARK 465 ARG B 74 REMARK 465 SER B 75 REMARK 465 HIS B 76 REMARK 465 HIS B 77 REMARK 465 HIS B 78 REMARK 465 HIS B 79 REMARK 465 HIS B 80 REMARK 465 HIS B 81 REMARK 465 GLY B 82 REMARK 465 LEU B 83 REMARK 465 ILE B 84 REMARK 465 GLN B 85 REMARK 465 GLU B 86 REMARK 465 ARG B 87 REMARK 465 ARG B 88 REMARK 465 SER B 89 REMARK 465 HIS B 90 REMARK 465 GLU B 91 REMARK 465 LEU B 105 REMARK 465 THR B 106 REMARK 465 GLY B 107 REMARK 465 GLY B 157 REMARK 465 LEU B 158 REMARK 465 ALA B 159 REMARK 465 ARG C 74 REMARK 465 SER C 75 REMARK 465 HIS C 76 REMARK 465 HIS C 77 REMARK 465 HIS C 78 REMARK 465 HIS C 79 REMARK 465 HIS C 80 REMARK 465 HIS C 81 REMARK 465 GLY C 82 REMARK 465 LEU C 83 REMARK 465 ILE C 84 REMARK 465 GLN C 85 REMARK 465 GLU C 86 REMARK 465 ARG C 87 REMARK 465 ARG C 88 REMARK 465 SER C 89 REMARK 465 HIS C 90 REMARK 465 GLU C 91 REMARK 465 LEU C 105 REMARK 465 THR C 106 REMARK 465 GLY C 107 REMARK 465 SER C 108 REMARK 465 GLY C 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 156 CG CD1 CD2 REMARK 470 LEU A 158 CG CD1 CD2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 156 CG CD1 CD2 REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 156 CB CG CD1 CD2 REMARK 470 TYR C 173 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 136 -61.45 -107.85 REMARK 500 CYS A 154 55.62 -140.86 REMARK 500 LEU A 158 -72.19 -129.62 REMARK 500 ALA A 159 163.32 173.17 REMARK 500 SER A 185 136.78 -179.71 REMARK 500 GLN B 117 -63.73 -122.84 REMARK 500 LEU B 179 -66.71 -125.39 REMARK 500 ASP B 221 70.15 53.34 REMARK 500 ALA C 101 162.57 178.38 REMARK 500 THR C 116 -55.95 -124.87 REMARK 500 ASP C 130 70.01 41.48 REMARK 500 CYS C 154 57.42 87.11 REMARK 500 PRO C 174 73.98 -65.73 REMARK 500 LEU C 179 -74.39 -86.65 REMARK 500 CYS C 187 -165.57 -171.53 REMARK 500 SER C 194 -3.39 71.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 242 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG A 242 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011104 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DIFFERENCE BETWEEN SEQUENCE AND UNP REFERENCE REFLECTS NATURAL REMARK 999 VARIATION DBREF 3UGN A 83 240 UNP O43557 TNF14_HUMAN 83 240 DBREF 3UGN B 83 240 UNP O43557 TNF14_HUMAN 83 240 DBREF 3UGN C 83 240 UNP O43557 TNF14_HUMAN 83 240 SEQADV 3UGN ARG A 74 UNP O43557 EXPRESSION TAG SEQADV 3UGN SER A 75 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS A 76 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS A 77 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS A 78 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS A 79 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS A 80 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS A 81 UNP O43557 EXPRESSION TAG SEQADV 3UGN GLY A 82 UNP O43557 EXPRESSION TAG SEQADV 3UGN GLU A 214 UNP O43557 LYS 214 SEE REMARK 999 SEQADV 3UGN ARG B 74 UNP O43557 EXPRESSION TAG SEQADV 3UGN SER B 75 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS B 76 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS B 77 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS B 78 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS B 79 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS B 80 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS B 81 UNP O43557 EXPRESSION TAG SEQADV 3UGN GLY B 82 UNP O43557 EXPRESSION TAG SEQADV 3UGN GLU B 214 UNP O43557 LYS 214 SEE REMARK 999 SEQADV 3UGN ARG C 74 UNP O43557 EXPRESSION TAG SEQADV 3UGN SER C 75 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS C 76 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS C 77 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS C 78 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS C 79 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS C 80 UNP O43557 EXPRESSION TAG SEQADV 3UGN HIS C 81 UNP O43557 EXPRESSION TAG SEQADV 3UGN GLY C 82 UNP O43557 EXPRESSION TAG SEQADV 3UGN GLU C 214 UNP O43557 LYS 214 SEE REMARK 999 SEQRES 1 A 167 ARG SER HIS HIS HIS HIS HIS HIS GLY LEU ILE GLN GLU SEQRES 2 A 167 ARG ARG SER HIS GLU VAL ASN PRO ALA ALA HIS LEU THR SEQRES 3 A 167 GLY ALA ASN SER SER LEU THR GLY SER GLY GLY PRO LEU SEQRES 4 A 167 LEU TRP GLU THR GLN LEU GLY LEU ALA PHE LEU ARG GLY SEQRES 5 A 167 LEU SER TYR HIS ASP GLY ALA LEU VAL VAL THR LYS ALA SEQRES 6 A 167 GLY TYR TYR TYR ILE TYR SER LYS VAL GLN LEU GLY GLY SEQRES 7 A 167 VAL GLY CYS PRO LEU GLY LEU ALA SER THR ILE THR HIS SEQRES 8 A 167 GLY LEU TYR LYS ARG THR PRO ARG TYR PRO GLU GLU LEU SEQRES 9 A 167 GLU LEU LEU VAL SER GLN GLN SER PRO CYS GLY ARG ALA SEQRES 10 A 167 THR SER SER SER ARG VAL TRP TRP ASP SER SER PHE LEU SEQRES 11 A 167 GLY GLY VAL VAL HIS LEU GLU ALA GLY GLU GLU VAL VAL SEQRES 12 A 167 VAL ARG VAL LEU ASP GLU ARG LEU VAL ARG LEU ARG ASP SEQRES 13 A 167 GLY THR ARG SER TYR PHE GLY ALA PHE MET VAL SEQRES 1 B 167 ARG SER HIS HIS HIS HIS HIS HIS GLY LEU ILE GLN GLU SEQRES 2 B 167 ARG ARG SER HIS GLU VAL ASN PRO ALA ALA HIS LEU THR SEQRES 3 B 167 GLY ALA ASN SER SER LEU THR GLY SER GLY GLY PRO LEU SEQRES 4 B 167 LEU TRP GLU THR GLN LEU GLY LEU ALA PHE LEU ARG GLY SEQRES 5 B 167 LEU SER TYR HIS ASP GLY ALA LEU VAL VAL THR LYS ALA SEQRES 6 B 167 GLY TYR TYR TYR ILE TYR SER LYS VAL GLN LEU GLY GLY SEQRES 7 B 167 VAL GLY CYS PRO LEU GLY LEU ALA SER THR ILE THR HIS SEQRES 8 B 167 GLY LEU TYR LYS ARG THR PRO ARG TYR PRO GLU GLU LEU SEQRES 9 B 167 GLU LEU LEU VAL SER GLN GLN SER PRO CYS GLY ARG ALA SEQRES 10 B 167 THR SER SER SER ARG VAL TRP TRP ASP SER SER PHE LEU SEQRES 11 B 167 GLY GLY VAL VAL HIS LEU GLU ALA GLY GLU GLU VAL VAL SEQRES 12 B 167 VAL ARG VAL LEU ASP GLU ARG LEU VAL ARG LEU ARG ASP SEQRES 13 B 167 GLY THR ARG SER TYR PHE GLY ALA PHE MET VAL SEQRES 1 C 167 ARG SER HIS HIS HIS HIS HIS HIS GLY LEU ILE GLN GLU SEQRES 2 C 167 ARG ARG SER HIS GLU VAL ASN PRO ALA ALA HIS LEU THR SEQRES 3 C 167 GLY ALA ASN SER SER LEU THR GLY SER GLY GLY PRO LEU SEQRES 4 C 167 LEU TRP GLU THR GLN LEU GLY LEU ALA PHE LEU ARG GLY SEQRES 5 C 167 LEU SER TYR HIS ASP GLY ALA LEU VAL VAL THR LYS ALA SEQRES 6 C 167 GLY TYR TYR TYR ILE TYR SER LYS VAL GLN LEU GLY GLY SEQRES 7 C 167 VAL GLY CYS PRO LEU GLY LEU ALA SER THR ILE THR HIS SEQRES 8 C 167 GLY LEU TYR LYS ARG THR PRO ARG TYR PRO GLU GLU LEU SEQRES 9 C 167 GLU LEU LEU VAL SER GLN GLN SER PRO CYS GLY ARG ALA SEQRES 10 C 167 THR SER SER SER ARG VAL TRP TRP ASP SER SER PHE LEU SEQRES 11 C 167 GLY GLY VAL VAL HIS LEU GLU ALA GLY GLU GLU VAL VAL SEQRES 12 C 167 VAL ARG VAL LEU ASP GLU ARG LEU VAL ARG LEU ARG ASP SEQRES 13 C 167 GLY THR ARG SER TYR PHE GLY ALA PHE MET VAL HET PO4 A 1 5 HET GOL A 241 6 HET NAG A 242 14 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL C3 H8 O3 FORMUL 6 NAG C8 H15 N O6 FORMUL 7 HOH *12(H2 O) HELIX 1 1 LEU A 105 GLY A 109 5 5 HELIX 2 2 SER A 185 ARG A 189 5 5 HELIX 3 3 ARG A 228 SER A 233 1 6 HELIX 4 4 ASP B 221 VAL B 225 5 5 HELIX 5 5 LEU C 156 SER C 160 5 5 SHEET 1 A 3 LEU A 113 GLU A 115 0 SHEET 2 A 3 ALA A 95 ASN A 102 -1 N THR A 99 O GLU A 115 SHEET 3 A 3 PHE A 122 ARG A 124 -1 O ARG A 124 N ALA A 95 SHEET 1 B 5 LEU A 113 GLU A 115 0 SHEET 2 B 5 ALA A 95 ASN A 102 -1 N THR A 99 O GLU A 115 SHEET 3 B 5 TYR A 234 MET A 239 -1 O ALA A 237 N ALA A 96 SHEET 4 B 5 GLY A 139 GLY A 151 -1 N LYS A 146 O TYR A 234 SHEET 5 B 5 TRP A 197 LEU A 209 -1 O ASP A 199 N LEU A 149 SHEET 1 C 5 SER A 127 HIS A 129 0 SHEET 2 C 5 ALA A 132 VAL A 134 -1 O VAL A 134 N SER A 127 SHEET 3 C 5 GLU A 214 LEU A 220 -1 O VAL A 215 N LEU A 133 SHEET 4 C 5 ILE A 162 ARG A 169 -1 N THR A 163 O LEU A 220 SHEET 5 C 5 GLU A 176 GLN A 184 -1 O SER A 182 N HIS A 164 SHEET 1 D 3 TRP B 114 GLU B 115 0 SHEET 2 D 3 ALA B 95 GLY B 100 -1 N THR B 99 O GLU B 115 SHEET 3 D 3 PHE B 122 ARG B 124 -1 O ARG B 124 N ALA B 95 SHEET 1 E 5 TRP B 114 GLU B 115 0 SHEET 2 E 5 ALA B 95 GLY B 100 -1 N THR B 99 O GLU B 115 SHEET 3 E 5 TYR B 234 MET B 239 -1 O PHE B 235 N LEU B 98 SHEET 4 E 5 GLY B 139 VAL B 152 -1 N TYR B 142 O PHE B 238 SHEET 5 E 5 VAL B 196 LEU B 209 -1 O VAL B 207 N TYR B 141 SHEET 1 F 5 LEU B 126 HIS B 129 0 SHEET 2 F 5 ALA B 132 VAL B 135 -1 O VAL B 134 N SER B 127 SHEET 3 F 5 GLU B 214 VAL B 219 -1 O VAL B 215 N LEU B 133 SHEET 4 F 5 ILE B 162 ARG B 169 -1 N ARG B 169 O GLU B 214 SHEET 5 F 5 LEU B 177 GLN B 184 -1 O SER B 182 N HIS B 164 SHEET 1 G 5 PHE C 122 ARG C 124 0 SHEET 2 G 5 ALA C 95 LEU C 98 -1 N ALA C 95 O ARG C 124 SHEET 3 G 5 TYR C 234 MET C 239 -1 O PHE C 235 N LEU C 98 SHEET 4 G 5 GLY C 139 GLY C 151 -1 N TYR C 142 O PHE C 238 SHEET 5 G 5 TRP C 197 LEU C 209 -1 O LEU C 209 N GLY C 139 SHEET 1 H 5 LEU C 126 HIS C 129 0 SHEET 2 H 5 ALA C 132 VAL C 135 -1 O VAL C 134 N SER C 127 SHEET 3 H 5 GLU C 214 VAL C 219 -1 O VAL C 215 N LEU C 133 SHEET 4 H 5 ILE C 162 ARG C 169 -1 N ARG C 169 O GLU C 214 SHEET 5 H 5 GLU C 176 GLN C 184 -1 O LEU C 179 N LEU C 166 SSBOND 1 CYS A 154 CYS A 187 1555 1555 2.04 SSBOND 2 CYS B 154 CYS B 187 1555 1555 2.03 SSBOND 3 CYS C 154 CYS C 187 1555 1555 2.00 SITE 1 AC1 5 GLY A 139 TYR A 140 MET A 239 VAL A 240 SITE 2 AC1 5 ARG B 124 SITE 1 AC2 8 GLN A 184 SER A 200 SER A 201 PHE A 202 SITE 2 AC2 8 GLN B 184 SER B 200 GLN C 184 SER C 200 SITE 1 AC3 5 HOH A 16 ASN A 102 SER A 104 LEU A 118 SITE 2 AC3 5 GLY A 119 CRYST1 94.699 99.981 124.382 90.00 90.00 90.00 I 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010560 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008040 0.00000