HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-NOV-11 3UIE TITLE CRYSTAL STRUCTURE OF ADENOSINE 5'-PHOSPHOSULFATE KINASE FROM TITLE 2 ARABIDOPSIS THALIANA IN COMPLEX WITH AMPPNP AND APS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLYL-SULFATE KINASE 1, CHLOROPLASTIC; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 77-276; COMPND 5 SYNONYM: ATP ADENOSINE-5'-PHOSPHOSULFATE 3'-PHOSPHOTRANSFERASE, COMPND 6 ADENOSINE-5'-PHOSPHOSULFATE KINASE, APS KINASE; COMPND 7 EC: 2.7.1.25; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AKN1, AT2G14750, F26C24.11, T6B13.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSSMANN FOLD, KINASE, CHLOROPLAST, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.E.RAVILIOUS,J.M.JEZ REVDAT 2 08-NOV-17 3UIE 1 REMARK REVDAT 1 25-JAN-12 3UIE 0 JRNL AUTH G.E.RAVILIOUS,A.NGUYEN,J.A.FRANCOIS,J.M.JEZ JRNL TITL STRUCTURAL BASIS AND EVOLUTION OF REDOX REGULATION IN PLANT JRNL TITL 2 ADENOSINE-5'-PHOSPHOSULFATE KINASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 309 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22184237 JRNL DOI 10.1073/PNAS.1115772108 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 61929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5403 - 3.8618 0.92 6284 339 0.1601 0.1768 REMARK 3 2 3.8618 - 3.0662 0.98 6607 385 0.1595 0.1812 REMARK 3 3 3.0662 - 2.6789 0.96 6498 341 0.1763 0.2094 REMARK 3 4 2.6789 - 2.4340 0.94 6327 312 0.1797 0.2079 REMARK 3 5 2.4340 - 2.2596 0.91 6119 336 0.1755 0.2387 REMARK 3 6 2.2596 - 2.1265 0.93 6279 335 0.1734 0.2141 REMARK 3 7 2.1265 - 2.0200 0.94 6353 311 0.1879 0.2274 REMARK 3 8 2.0200 - 1.9321 0.84 5674 310 0.1989 0.2459 REMARK 3 9 1.9321 - 1.8577 0.69 4666 248 0.2346 0.2752 REMARK 3 10 1.8577 - 1.7936 0.60 3962 243 0.2772 0.2909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 59.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78310 REMARK 3 B22 (A**2) : 13.03130 REMARK 3 B33 (A**2) : -12.24820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.74310 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4803 REMARK 3 ANGLE : 1.076 6534 REMARK 3 CHIRALITY : 0.061 723 REMARK 3 PLANARITY : 0.004 827 REMARK 3 DIHEDRAL : 22.163 1993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 5.4967 -0.3418 -13.0846 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.2548 REMARK 3 T33: 0.2050 T12: 0.0226 REMARK 3 T13: -0.0056 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4986 L22: 0.7942 REMARK 3 L33: 1.7133 L12: -0.2067 REMARK 3 L13: -0.4680 L23: 0.0107 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.0335 S13: -0.0188 REMARK 3 S21: -0.0639 S22: -0.0274 S23: 0.0014 REMARK 3 S31: 0.0806 S32: 0.0737 S33: 0.0357 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -11.2051 24.5241 -34.9406 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.2168 REMARK 3 T33: 0.2346 T12: 0.0899 REMARK 3 T13: 0.0214 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 1.8995 L22: 0.4261 REMARK 3 L33: 1.1220 L12: -0.4888 REMARK 3 L13: -0.2144 L23: -0.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: -0.1139 S13: -0.0214 REMARK 3 S21: 0.0444 S22: 0.0973 S23: 0.0237 REMARK 3 S31: -0.2000 S32: -0.0663 S33: -0.0399 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -2.6479 22.5570 -60.7723 REMARK 3 T TENSOR REMARK 3 T11: 0.2584 T22: 0.3465 REMARK 3 T33: 0.1905 T12: 0.0913 REMARK 3 T13: 0.0047 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.6938 L22: 0.6762 REMARK 3 L33: 1.4088 L12: -0.2874 REMARK 3 L13: -0.8855 L23: -0.0747 REMARK 3 S TENSOR REMARK 3 S11: 0.1318 S12: 0.5326 S13: 0.0013 REMARK 3 S21: -0.1431 S22: -0.1184 S23: 0.0135 REMARK 3 S31: -0.2180 S32: -0.2982 S33: -0.0276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068793. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : HIGH RESOLUTION DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.794 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 200 MM MAGNESIUM REMARK 280 CHLORIDE, 17.5 % PEG 2000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.56850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.65650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.56850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.65650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CHAIN A AND SYMMETRY MATE FORM CRYSTALLOGRAPHIC DIMER REMARK 300 CHAIN B AND C FORM NON-CRYSTALLOGRAPHIC DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OE1 GLU A 252 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 532 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 77 REMARK 465 SER A 78 REMARK 465 THR A 79 REMARK 465 ASN A 80 REMARK 465 ILE A 81 REMARK 465 LYS A 82 REMARK 465 TRP A 83 REMARK 465 HIS A 84 REMARK 465 GLU A 85 REMARK 465 ASN B 77 REMARK 465 SER B 78 REMARK 465 THR B 79 REMARK 465 ASN C 77 REMARK 465 SER C 78 REMARK 465 THR C 79 REMARK 465 ASN C 80 REMARK 465 ILE C 81 REMARK 465 LYS C 82 REMARK 465 TRP C 83 REMARK 465 HIS C 84 REMARK 465 GLU C 85 REMARK 465 ARG C 251 REMARK 465 GLU C 252 REMARK 465 GLY C 253 REMARK 465 GLY C 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 80 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 136 O HOH A 552 1.93 REMARK 500 O HOH C 505 O HOH C 513 2.05 REMARK 500 O HOH B 456 O HOH B 506 2.06 REMARK 500 O HOH C 415 O HOH C 500 2.07 REMARK 500 O HOH A 638 O HOH A 644 2.08 REMARK 500 O HOH B 481 O HOH B 512 2.11 REMARK 500 NH2 ARG C 192 OE1 GLU C 202 2.13 REMARK 500 O HOH B 462 O HOH B 546 2.16 REMARK 500 O HOH B 567 O HOH B 579 2.16 REMARK 500 O HOH A 619 O HOH A 624 2.17 REMARK 500 O HOH A 664 O HOH A 667 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 252 OE1 GLU A 252 2554 1.26 REMARK 500 OE1 GLU A 252 OE2 GLU A 252 2554 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 252 OE1 - CD - OE2 ANGL. DEV. = -22.1 DEGREES REMARK 500 GLU A 252 CG - CD - OE1 ANGL. DEV. = 21.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 149 -158.42 -96.52 REMARK 500 SER A 182 65.58 38.07 REMARK 500 ASP A 216 60.08 33.73 REMARK 500 ASN A 244 56.04 -150.37 REMARK 500 GLU A 252 172.51 125.95 REMARK 500 SER B 149 -153.69 -98.79 REMARK 500 SER B 182 67.98 38.80 REMARK 500 ASP B 216 53.91 34.05 REMARK 500 ASN B 244 45.04 -143.07 REMARK 500 ARG B 251 -55.01 -123.27 REMARK 500 SER C 149 -151.49 -99.97 REMARK 500 SER C 182 66.22 34.81 REMARK 500 ASP C 216 61.15 27.16 REMARK 500 ASN C 244 52.04 -153.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 471 O REMARK 620 2 HOH C 446 O 84.4 REMARK 620 3 HOH C 431 O 87.9 172.0 REMARK 620 4 SER C 115 OG 92.4 92.5 85.5 REMARK 620 5 ANP C 302 O2G 88.9 90.2 91.9 177.1 REMARK 620 6 ANP C 302 O1B 170.2 86.0 101.5 85.8 93.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 541 O REMARK 620 2 ANP A 402 O2G 94.7 REMARK 620 3 HOH A 575 O 87.2 88.8 REMARK 620 4 ANP A 402 O1B 87.2 97.7 171.8 REMARK 620 5 SER A 115 OG 91.6 172.4 87.3 86.9 REMARK 620 6 HOH A 509 O 168.0 95.0 86.0 98.5 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B 302 O2B REMARK 620 2 HOH B 443 O 173.5 REMARK 620 3 ANP B 302 O3G 94.0 91.8 REMARK 620 4 SER B 115 OG 84.2 89.9 178.2 REMARK 620 5 HOH B 439 O 92.3 84.5 94.8 85.3 REMARK 620 6 HOH B 474 O 92.5 90.1 90.9 89.2 172.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADX C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 303 DBREF 3UIE A 77 276 UNP Q43295 KAP1_ARATH 77 276 DBREF 3UIE B 77 276 UNP Q43295 KAP1_ARATH 77 276 DBREF 3UIE C 77 276 UNP Q43295 KAP1_ARATH 77 276 SEQRES 1 A 200 ASN SER THR ASN ILE LYS TRP HIS GLU CYS SER VAL GLU SEQRES 2 A 200 LYS VAL ASP ARG GLN ARG LEU LEU ASP GLN LYS GLY CYS SEQRES 3 A 200 VAL ILE TRP VAL THR GLY LEU SER GLY SER GLY LYS SER SEQRES 4 A 200 THR LEU ALA CYS ALA LEU ASN GLN MET LEU TYR GLN LYS SEQRES 5 A 200 GLY LYS LEU CYS TYR ILE LEU ASP GLY ASP ASN VAL ARG SEQRES 6 A 200 HIS GLY LEU ASN ARG ASP LEU SER PHE LYS ALA GLU ASP SEQRES 7 A 200 ARG ALA GLU ASN ILE ARG ARG VAL GLY GLU VAL ALA LYS SEQRES 8 A 200 LEU PHE ALA ASP ALA GLY ILE ILE CYS ILE ALA SER LEU SEQRES 9 A 200 ILE SER PRO TYR ARG THR ASP ARG ASP ALA CYS ARG SER SEQRES 10 A 200 LEU LEU PRO GLU GLY ASP PHE VAL GLU VAL PHE MET ASP SEQRES 11 A 200 VAL PRO LEU SER VAL CYS GLU ALA ARG ASP PRO LYS GLY SEQRES 12 A 200 LEU TYR LYS LEU ALA ARG ALA GLY LYS ILE LYS GLY PHE SEQRES 13 A 200 THR GLY ILE ASP ASP PRO TYR GLU PRO PRO LEU ASN CYS SEQRES 14 A 200 GLU ILE SER LEU GLY ARG GLU GLY GLY THR SER PRO ILE SEQRES 15 A 200 GLU MET ALA GLU LYS VAL VAL GLY TYR LEU ASP ASN LYS SEQRES 16 A 200 GLY TYR LEU GLN ALA SEQRES 1 B 200 ASN SER THR ASN ILE LYS TRP HIS GLU CYS SER VAL GLU SEQRES 2 B 200 LYS VAL ASP ARG GLN ARG LEU LEU ASP GLN LYS GLY CYS SEQRES 3 B 200 VAL ILE TRP VAL THR GLY LEU SER GLY SER GLY LYS SER SEQRES 4 B 200 THR LEU ALA CYS ALA LEU ASN GLN MET LEU TYR GLN LYS SEQRES 5 B 200 GLY LYS LEU CYS TYR ILE LEU ASP GLY ASP ASN VAL ARG SEQRES 6 B 200 HIS GLY LEU ASN ARG ASP LEU SER PHE LYS ALA GLU ASP SEQRES 7 B 200 ARG ALA GLU ASN ILE ARG ARG VAL GLY GLU VAL ALA LYS SEQRES 8 B 200 LEU PHE ALA ASP ALA GLY ILE ILE CYS ILE ALA SER LEU SEQRES 9 B 200 ILE SER PRO TYR ARG THR ASP ARG ASP ALA CYS ARG SER SEQRES 10 B 200 LEU LEU PRO GLU GLY ASP PHE VAL GLU VAL PHE MET ASP SEQRES 11 B 200 VAL PRO LEU SER VAL CYS GLU ALA ARG ASP PRO LYS GLY SEQRES 12 B 200 LEU TYR LYS LEU ALA ARG ALA GLY LYS ILE LYS GLY PHE SEQRES 13 B 200 THR GLY ILE ASP ASP PRO TYR GLU PRO PRO LEU ASN CYS SEQRES 14 B 200 GLU ILE SER LEU GLY ARG GLU GLY GLY THR SER PRO ILE SEQRES 15 B 200 GLU MET ALA GLU LYS VAL VAL GLY TYR LEU ASP ASN LYS SEQRES 16 B 200 GLY TYR LEU GLN ALA SEQRES 1 C 200 ASN SER THR ASN ILE LYS TRP HIS GLU CYS SER VAL GLU SEQRES 2 C 200 LYS VAL ASP ARG GLN ARG LEU LEU ASP GLN LYS GLY CYS SEQRES 3 C 200 VAL ILE TRP VAL THR GLY LEU SER GLY SER GLY LYS SER SEQRES 4 C 200 THR LEU ALA CYS ALA LEU ASN GLN MET LEU TYR GLN LYS SEQRES 5 C 200 GLY LYS LEU CYS TYR ILE LEU ASP GLY ASP ASN VAL ARG SEQRES 6 C 200 HIS GLY LEU ASN ARG ASP LEU SER PHE LYS ALA GLU ASP SEQRES 7 C 200 ARG ALA GLU ASN ILE ARG ARG VAL GLY GLU VAL ALA LYS SEQRES 8 C 200 LEU PHE ALA ASP ALA GLY ILE ILE CYS ILE ALA SER LEU SEQRES 9 C 200 ILE SER PRO TYR ARG THR ASP ARG ASP ALA CYS ARG SER SEQRES 10 C 200 LEU LEU PRO GLU GLY ASP PHE VAL GLU VAL PHE MET ASP SEQRES 11 C 200 VAL PRO LEU SER VAL CYS GLU ALA ARG ASP PRO LYS GLY SEQRES 12 C 200 LEU TYR LYS LEU ALA ARG ALA GLY LYS ILE LYS GLY PHE SEQRES 13 C 200 THR GLY ILE ASP ASP PRO TYR GLU PRO PRO LEU ASN CYS SEQRES 14 C 200 GLU ILE SER LEU GLY ARG GLU GLY GLY THR SER PRO ILE SEQRES 15 C 200 GLU MET ALA GLU LYS VAL VAL GLY TYR LEU ASP ASN LYS SEQRES 16 C 200 GLY TYR LEU GLN ALA HET ADX A 401 27 HET ANP A 402 31 HET MG A 403 1 HET ADX B 301 27 HET ANP B 302 31 HET MG B 303 1 HET ADX C 301 27 HET ANP C 302 31 HET MG C 303 1 HETNAM ADX ADENOSINE-5'-PHOSPHOSULFATE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 4 ADX 3(C10 H14 N5 O10 P S) FORMUL 5 ANP 3(C10 H17 N6 O12 P3) FORMUL 6 MG 3(MG 2+) FORMUL 13 HOH *479(H2 O) HELIX 1 1 GLU A 89 ASP A 98 1 10 HELIX 2 2 GLY A 113 LYS A 128 1 16 HELIX 3 3 GLY A 137 ARG A 141 1 5 HELIX 4 4 LYS A 151 ALA A 172 1 22 HELIX 5 5 TYR A 184 LEU A 194 1 11 HELIX 6 6 PRO A 208 ASP A 216 1 9 HELIX 7 7 GLY A 219 ALA A 226 1 8 HELIX 8 8 SER A 256 GLY A 272 1 17 HELIX 9 9 GLU B 89 ASP B 98 1 10 HELIX 10 10 GLY B 113 LYS B 128 1 16 HELIX 11 11 GLY B 137 ARG B 141 1 5 HELIX 12 12 LYS B 151 ALA B 172 1 22 HELIX 13 13 TYR B 184 LEU B 194 1 11 HELIX 14 14 PRO B 208 ASP B 216 1 9 HELIX 15 15 GLY B 219 ALA B 226 1 8 HELIX 16 16 SER B 256 LYS B 271 1 16 HELIX 17 17 GLU C 89 ASP C 98 1 10 HELIX 18 18 GLY C 113 LYS C 128 1 16 HELIX 19 19 GLY C 137 ARG C 141 1 5 HELIX 20 20 LYS C 151 ALA C 172 1 22 HELIX 21 21 TYR C 184 LEU C 194 1 11 HELIX 22 22 PRO C 208 ASP C 216 1 9 HELIX 23 23 GLY C 219 ALA C 226 1 8 HELIX 24 24 SER C 256 GLY C 272 1 17 SHEET 1 A 5 CYS A 132 ASP A 136 0 SHEET 2 A 5 ILE A 175 SER A 179 1 O ILE A 177 N LEU A 135 SHEET 3 A 5 CYS A 102 THR A 107 1 N ILE A 104 O CYS A 176 SHEET 4 A 5 PHE A 200 MET A 205 1 O VAL A 203 N TRP A 105 SHEET 5 A 5 ILE A 247 LEU A 249 1 O LEU A 249 N PHE A 204 SHEET 1 B 5 CYS B 132 ASP B 136 0 SHEET 2 B 5 ILE B 175 SER B 179 1 O SER B 179 N LEU B 135 SHEET 3 B 5 CYS B 102 THR B 107 1 N ILE B 104 O CYS B 176 SHEET 4 B 5 PHE B 200 MET B 205 1 O VAL B 203 N TRP B 105 SHEET 5 B 5 ILE B 247 LEU B 249 1 O LEU B 249 N PHE B 204 SHEET 1 C 5 CYS C 132 ASP C 136 0 SHEET 2 C 5 ILE C 175 SER C 179 1 O ILE C 177 N LEU C 135 SHEET 3 C 5 CYS C 102 THR C 107 1 N VAL C 106 O ALA C 178 SHEET 4 C 5 PHE C 200 MET C 205 1 O VAL C 201 N VAL C 103 SHEET 5 C 5 ILE C 247 LEU C 249 1 O LEU C 249 N PHE C 204 SSBOND 1 CYS A 86 CYS A 119 1555 2555 2.04 SSBOND 2 CYS B 86 CYS C 119 1555 1555 2.03 SSBOND 3 CYS B 119 CYS C 86 1555 1555 2.03 LINK MG MG C 303 O HOH C 471 1555 1555 1.84 LINK MG MG A 403 O HOH A 541 1555 1555 2.01 LINK O2G ANP A 402 MG MG A 403 1555 1555 2.07 LINK MG MG A 403 O HOH A 575 1555 1555 2.07 LINK MG MG C 303 O HOH C 446 1555 1555 2.07 LINK O2B ANP B 302 MG MG B 303 1555 1555 2.08 LINK MG MG B 303 O HOH B 443 1555 1555 2.09 LINK O3G ANP B 302 MG MG B 303 1555 1555 2.12 LINK OG SER B 115 MG MG B 303 1555 1555 2.13 LINK MG MG B 303 O HOH B 439 1555 1555 2.14 LINK O1B ANP A 402 MG MG A 403 1555 1555 2.18 LINK MG MG C 303 O HOH C 431 1555 1555 2.22 LINK OG SER A 115 MG MG A 403 1555 1555 2.24 LINK OG SER C 115 MG MG C 303 1555 1555 2.25 LINK O2G ANP C 302 MG MG C 303 1555 1555 2.25 LINK MG MG A 403 O HOH A 509 1555 1555 2.27 LINK O1B ANP C 302 MG MG C 303 1555 1555 2.27 LINK MG MG B 303 O HOH B 474 1555 1555 2.33 SITE 1 AC1 16 GLY A 137 ARG A 141 PHE A 150 ARG A 155 SITE 2 AC1 16 ASN A 158 LEU A 180 ILE A 181 SER A 182 SITE 3 AC1 16 PRO A 183 LYS A 218 LEU A 220 GLY A 231 SITE 4 AC1 16 PHE A 232 THR A 233 ANP A 402 HOH A 571 SITE 1 AC2 22 LEU A 109 SER A 110 GLY A 111 SER A 112 SITE 2 AC2 22 GLY A 113 LYS A 114 SER A 115 THR A 116 SITE 3 AC2 22 ILE A 181 ARG A 215 PRO A 217 LYS A 218 SITE 4 AC2 22 THR A 255 PRO A 257 MET A 260 ADX A 401 SITE 5 AC2 22 MG A 403 HOH A 541 HOH A 570 HOH A 571 SITE 6 AC2 22 HOH A 575 HOH A 588 SITE 1 AC3 5 SER A 115 ANP A 402 HOH A 509 HOH A 541 SITE 2 AC3 5 HOH A 575 SITE 1 AC4 15 GLY B 137 ARG B 141 PHE B 150 ARG B 155 SITE 2 AC4 15 ASN B 158 ILE B 159 LEU B 180 ILE B 181 SITE 3 AC4 15 SER B 182 PRO B 183 LYS B 218 LEU B 220 SITE 4 AC4 15 PHE B 232 ANP B 302 HOH B 427 SITE 1 AC5 22 LEU B 109 SER B 110 GLY B 111 SER B 112 SITE 2 AC5 22 GLY B 113 LYS B 114 SER B 115 THR B 116 SITE 3 AC5 22 ILE B 181 ARG B 215 PRO B 217 LYS B 218 SITE 4 AC5 22 THR B 255 PRO B 257 MET B 260 ADX B 301 SITE 5 AC5 22 MG B 303 HOH B 427 HOH B 439 HOH B 443 SITE 6 AC5 22 HOH B 497 HOH B 536 SITE 1 AC6 5 SER B 115 ANP B 302 HOH B 439 HOH B 443 SITE 2 AC6 5 HOH B 474 SITE 1 AC7 20 ASN B 80 ILE B 81 GLY C 137 ASP C 138 SITE 2 AC7 20 ARG C 141 PHE C 150 ARG C 155 ASN C 158 SITE 3 AC7 20 LEU C 180 ILE C 181 SER C 182 PRO C 183 SITE 4 AC7 20 LYS C 218 LEU C 220 LYS C 230 GLY C 231 SITE 5 AC7 20 PHE C 232 THR C 233 ANP C 302 HOH C 475 SITE 1 AC8 21 LEU C 109 SER C 110 GLY C 111 SER C 112 SITE 2 AC8 21 GLY C 113 LYS C 114 SER C 115 THR C 116 SITE 3 AC8 21 ASP C 138 ARG C 215 PRO C 217 LYS C 218 SITE 4 AC8 21 THR C 255 PRO C 257 MET C 260 ADX C 301 SITE 5 AC8 21 MG C 303 HOH C 446 HOH C 457 HOH C 465 SITE 6 AC8 21 HOH C 471 SITE 1 AC9 5 SER C 115 ANP C 302 HOH C 431 HOH C 446 SITE 2 AC9 5 HOH C 471 CRYST1 121.137 95.313 73.327 90.00 114.08 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008255 0.000000 0.003690 0.00000 SCALE2 0.000000 0.010492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014938 0.00000