data_3UKG # _entry.id 3UKG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UKG pdb_00003ukg 10.2210/pdb3ukg/pdb NDB NA1380 ? ? RCSB RCSB068866 ? ? WWPDB D_1000068866 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UKG _pdbx_database_status.recvd_initial_deposition_date 2011-11-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Matot, B.' 1 'Le Bihan, Y.-V.' 2 'Gasparini, S.' 3 'LeDu, M.H.' 4 # _citation.id primary _citation.title 'The orientation of the C-terminal domain of the Saccharomyces cerevisiae Rap1 protein is determined by its binding to DNA.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 3197 _citation.page_last 3207 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22139930 _citation.pdbx_database_id_DOI 10.1093/nar/gkr1166 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Matot, B.' 1 ? primary 'Le Bihan, Y.V.' 2 ? primary 'Lescasse, R.' 3 ? primary 'Perez, J.' 4 ? primary 'Miron, S.' 5 ? primary 'David, G.' 6 ? primary 'Castaing, B.' 7 ? primary 'Weber, P.' 8 ? primary 'Raynal, B.' 9 ? primary 'Zinn-Justin, S.' 10 ? primary 'Gasparini, S.' 11 ? primary 'Le Du, M.H.' 12 ? # _cell.entry_id 3UKG _cell.length_a 40.595 _cell.length_b 102.944 _cell.length_c 116.755 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UKG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA-binding protein RAP1' 28368.781 1 ? ? 'DNA Binding domain, UNP residues 360-601' ? 2 polymer syn 'telomeric DNA' 9398.094 1 ? ? ? ? 3 polymer syn 'telomeric DNA' 9668.173 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 5 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Repressor/activator site-binding protein, SBF-E, TUF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTK VLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRG PIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTNRPKRPGVPTPGNYNSAAKRA RN ; ;KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTK VLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRG PIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTNRPKRPGVPTPGNYNSAAKRA RN ; A ? 2 polydeoxyribonucleotide no no ;(DG)(DA)(DA)(DC)(DA)(DC)(DC)(DA)(DC)(DA)(DC)(DA)(DA)(DC)(DA)(DC)(DC)(DC)(DA)(DC) (DA)(DC)(DA)(DC)(DC)(DA)(DG)(DG)(DT)(DG)(DT) ; GAACACCACACAACACCCACACACCAGGTGT C ? 3 polydeoxyribonucleotide no no ;(DA)(DC)(DC)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DT)(DG)(DG)(DG)(DT)(DG)(DT)(DT)(DG)(DT) (DG)(DT)(DG)(DG)(DT)(DG)(DT)(DT)(DC)(DA)(DC) ; ACCTGGTGTGTGGGTGTTGTGTGGTGTTCAC D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ALA n 1 3 SER n 1 4 PHE n 1 5 THR n 1 6 ASP n 1 7 GLU n 1 8 GLU n 1 9 ASP n 1 10 GLU n 1 11 PHE n 1 12 ILE n 1 13 LEU n 1 14 ASP n 1 15 VAL n 1 16 VAL n 1 17 ARG n 1 18 LYS n 1 19 ASN n 1 20 PRO n 1 21 THR n 1 22 ARG n 1 23 ARG n 1 24 THR n 1 25 THR n 1 26 HIS n 1 27 THR n 1 28 LEU n 1 29 TYR n 1 30 ASP n 1 31 GLU n 1 32 ILE n 1 33 SER n 1 34 HIS n 1 35 TYR n 1 36 VAL n 1 37 PRO n 1 38 ASN n 1 39 HIS n 1 40 THR n 1 41 GLY n 1 42 ASN n 1 43 SER n 1 44 ILE n 1 45 ARG n 1 46 HIS n 1 47 ARG n 1 48 PHE n 1 49 ARG n 1 50 VAL n 1 51 TYR n 1 52 LEU n 1 53 SER n 1 54 LYS n 1 55 ARG n 1 56 LEU n 1 57 GLU n 1 58 TYR n 1 59 VAL n 1 60 TYR n 1 61 GLU n 1 62 VAL n 1 63 ASP n 1 64 LYS n 1 65 PHE n 1 66 GLY n 1 67 LYS n 1 68 LEU n 1 69 VAL n 1 70 ARG n 1 71 ASP n 1 72 ASP n 1 73 ASP n 1 74 GLY n 1 75 ASN n 1 76 LEU n 1 77 ILE n 1 78 LYS n 1 79 THR n 1 80 LYS n 1 81 VAL n 1 82 LEU n 1 83 PRO n 1 84 PRO n 1 85 SER n 1 86 ILE n 1 87 LYS n 1 88 ARG n 1 89 LYS n 1 90 PHE n 1 91 SER n 1 92 ALA n 1 93 ASP n 1 94 GLU n 1 95 ASP n 1 96 TYR n 1 97 THR n 1 98 LEU n 1 99 ALA n 1 100 ILE n 1 101 ALA n 1 102 VAL n 1 103 LYS n 1 104 LYS n 1 105 GLN n 1 106 PHE n 1 107 TYR n 1 108 ARG n 1 109 ASP n 1 110 LEU n 1 111 PHE n 1 112 GLN n 1 113 ILE n 1 114 ASP n 1 115 PRO n 1 116 ASP n 1 117 THR n 1 118 GLY n 1 119 ARG n 1 120 SER n 1 121 LEU n 1 122 ILE n 1 123 THR n 1 124 ASP n 1 125 GLU n 1 126 ASP n 1 127 THR n 1 128 PRO n 1 129 THR n 1 130 ALA n 1 131 ILE n 1 132 ALA n 1 133 ARG n 1 134 ARG n 1 135 ASN n 1 136 MET n 1 137 THR n 1 138 MET n 1 139 ASP n 1 140 PRO n 1 141 ASN n 1 142 HIS n 1 143 VAL n 1 144 PRO n 1 145 GLY n 1 146 SER n 1 147 GLU n 1 148 PRO n 1 149 ASN n 1 150 PHE n 1 151 ALA n 1 152 ALA n 1 153 TYR n 1 154 ARG n 1 155 THR n 1 156 GLN n 1 157 SER n 1 158 ARG n 1 159 ARG n 1 160 GLY n 1 161 PRO n 1 162 ILE n 1 163 ALA n 1 164 ARG n 1 165 GLU n 1 166 PHE n 1 167 PHE n 1 168 LYS n 1 169 HIS n 1 170 PHE n 1 171 ALA n 1 172 GLU n 1 173 GLU n 1 174 HIS n 1 175 ALA n 1 176 ALA n 1 177 HIS n 1 178 THR n 1 179 GLU n 1 180 ASN n 1 181 ALA n 1 182 TRP n 1 183 ARG n 1 184 ASP n 1 185 ARG n 1 186 PHE n 1 187 ARG n 1 188 LYS n 1 189 PHE n 1 190 LEU n 1 191 LEU n 1 192 ALA n 1 193 TYR n 1 194 GLY n 1 195 ILE n 1 196 ASP n 1 197 ASP n 1 198 TYR n 1 199 ILE n 1 200 SER n 1 201 TYR n 1 202 TYR n 1 203 GLU n 1 204 ALA n 1 205 GLU n 1 206 LYS n 1 207 ALA n 1 208 GLN n 1 209 ASN n 1 210 ARG n 1 211 GLU n 1 212 PRO n 1 213 GLU n 1 214 PRO n 1 215 MET n 1 216 LYS n 1 217 ASN n 1 218 LEU n 1 219 THR n 1 220 ASN n 1 221 ARG n 1 222 PRO n 1 223 LYS n 1 224 ARG n 1 225 PRO n 1 226 GLY n 1 227 VAL n 1 228 PRO n 1 229 THR n 1 230 PRO n 1 231 GLY n 1 232 ASN n 1 233 TYR n 1 234 ASN n 1 235 SER n 1 236 ALA n 1 237 ALA n 1 238 LYS n 1 239 ARG n 1 240 ALA n 1 241 ARG n 1 242 ASN n 2 1 DG n 2 2 DA n 2 3 DA n 2 4 DC n 2 5 DA n 2 6 DC n 2 7 DC n 2 8 DA n 2 9 DC n 2 10 DA n 2 11 DC n 2 12 DA n 2 13 DA n 2 14 DC n 2 15 DA n 2 16 DC n 2 17 DC n 2 18 DC n 2 19 DA n 2 20 DC n 2 21 DA n 2 22 DC n 2 23 DA n 2 24 DC n 2 25 DC n 2 26 DA n 2 27 DG n 2 28 DG n 2 29 DT n 2 30 DG n 2 31 DT n 3 1 DA n 3 2 DC n 3 3 DC n 3 4 DT n 3 5 DG n 3 6 DG n 3 7 DT n 3 8 DG n 3 9 DT n 3 10 DG n 3 11 DT n 3 12 DG n 3 13 DG n 3 14 DG n 3 15 DT n 3 16 DG n 3 17 DT n 3 18 DT n 3 19 DG n 3 20 DT n 3 21 DG n 3 22 DT n 3 23 DG n 3 24 DG n 3 25 DT n 3 26 DG n 3 27 DT n 3 28 DT n 3 29 DC n 3 30 DA n 3 31 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'RAP1, GRF1, TUF1, YNL216W, N1310' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 559292 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP RAP1_YEAST P11938 1 ;KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTK VLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRG PIAREFFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMKNLTNRPKRPGVPTPGNYNSAAKRA RN ; 360 ? 2 PDB 3UKG 3UKG 2 GAACACCACACAACACCCACACACCAGGTGT ? ? 3 PDB 3UKG 3UKG 3 ACCTGGTGTGTGGGTGTTGTGTGGTGTTCAC ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UKG A 1 ? 242 ? P11938 360 ? 601 ? 360 601 2 2 3UKG C 1 ? 31 ? 3UKG 1 ? 31 ? 1 31 3 3 3UKG D 1 ? 31 ? 3UKG 1 ? 31 ? 1 31 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UKG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_percent_sol 52.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '100mM Tris-HCl pH 8.0, 20% (v/v) PEGmme-550, 100mM CaCl2, and 5% (v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 140 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-11-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 3UKG _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 35.93 _reflns.d_resolution_high 2.95 _reflns.number_obs 10759 _reflns.number_all ? _reflns.percent_possible_obs 90.3 _reflns.pdbx_Rmerge_I_obs 0.138 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 53.93 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3UKG _refine.ls_number_reflns_obs 10759 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.93 _refine.ls_d_res_high 2.95 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1978 _refine.ls_R_factor_R_work 0.1913 _refine.ls_R_factor_R_free 0.2653 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.93 _refine.ls_number_reflns_R_free 961 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9021 _refine.correlation_coeff_Fo_to_Fc_free 0.8190 _refine.B_iso_mean 78.06 _refine.aniso_B[1][1] -11.8468 _refine.aniso_B[2][2] 20.4615 _refine.aniso_B[3][3] -8.6147 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1IGN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3UKG _refine_analyze.Luzzati_coordinate_error_obs 0.452 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1854 _refine_hist.pdbx_number_atoms_nucleic_acid 1271 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 3138 _refine_hist.d_res_high 2.95 _refine_hist.d_res_low 35.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.010 ? 2.00 3329 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.48 ? 2.00 4766 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 1411 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 49 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 343 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 3329 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? 5.00 0 SEMIHARMONIC 'X-RAY DIFFRACTION' t_omega_torsion 3.05 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 23.16 ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 424 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? 1.00 1 HARMONIC 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 3530 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.95 _refine_ls_shell.d_res_low 3.30 _refine_ls_shell.number_reflns_R_work 2645 _refine_ls_shell.R_factor_R_work 0.2228 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2943 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 9.14 _refine_ls_shell.number_reflns_R_free 266 _refine_ls_shell.number_reflns_all 2911 _refine_ls_shell.R_factor_all 0.2291 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UKG _struct.title 'Crystal structure of Rap1/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UKG _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text 'double Myb, transcription regulation, telomeres length regulation, telomeres protection, nucleus, DNA BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? ASN A 19 ? THR A 364 ASN A 378 1 ? 15 HELX_P HELX_P2 2 HIS A 26 ? SER A 33 ? HIS A 385 SER A 392 1 ? 8 HELX_P HELX_P3 3 THR A 40 ? LEU A 52 ? THR A 399 LEU A 411 1 ? 13 HELX_P HELX_P4 4 SER A 53 ? LEU A 56 ? SER A 412 LEU A 415 5 ? 4 HELX_P HELX_P5 5 SER A 91 ? GLN A 112 ? SER A 450 GLN A 471 1 ? 22 HELX_P HELX_P6 6 ALA A 163 ? HIS A 174 ? ALA A 522 HIS A 533 1 ? 12 HELX_P HELX_P7 7 THR A 178 ? PHE A 189 ? THR A 537 PHE A 548 1 ? 12 HELX_P HELX_P8 8 PHE A 189 ? GLY A 194 ? PHE A 548 GLY A 553 1 ? 6 HELX_P HELX_P9 9 GLY A 194 ? GLN A 208 ? GLY A 553 GLN A 567 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D CA . CA ? ? ? 1_555 A GLU 147 OE2 ? ? A CA 1 A GLU 506 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc2 metalc ? ? D CA . CA ? ? ? 1_555 A GLU 147 OE1 ? ? A CA 1 A GLU 506 1_555 ? ? ? ? ? ? ? 3.061 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 29 N3 ? ? C DG 1 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 29 O2 ? ? C DG 1 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 29 N4 ? ? C DG 1 D DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 26 O6 ? ? C DC 4 D DG 26 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog5 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 23 N1 ? ? C DC 7 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 23 O6 ? ? C DC 7 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 23 N2 ? ? C DC 7 D DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 22 N3 ? ? C DA 8 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 22 O4 ? ? C DA 8 D DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 21 N1 ? ? C DC 9 D DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 21 O6 ? ? C DC 9 D DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 21 N2 ? ? C DC 9 D DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 20 N3 ? ? C DA 10 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 20 O4 ? ? C DA 10 D DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 19 N1 ? ? C DC 11 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 19 O6 ? ? C DC 11 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 19 N2 ? ? C DC 11 D DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 18 N3 ? ? C DA 12 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 18 O4 ? ? C DA 12 D DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 17 N3 ? ? C DA 13 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 17 O4 ? ? C DA 13 D DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 16 N1 ? ? C DC 14 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 16 O6 ? ? C DC 14 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 16 N2 ? ? C DC 14 D DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 15 N3 ? ? C DA 15 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DA 15 N6 ? ? ? 1_555 C DT 15 O4 ? ? C DA 15 D DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 16 N3 ? ? ? 1_555 C DG 14 N1 ? ? C DC 16 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 16 N4 ? ? ? 1_555 C DG 14 O6 ? ? C DC 16 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 16 O2 ? ? ? 1_555 C DG 14 N2 ? ? C DC 16 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 17 N3 ? ? ? 1_555 C DG 13 N1 ? ? C DC 17 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 17 N4 ? ? ? 1_555 C DG 13 O6 ? ? C DC 17 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 17 O2 ? ? ? 1_555 C DG 13 N2 ? ? C DC 17 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 18 N3 ? ? ? 1_555 C DG 12 N1 ? ? C DC 18 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DC 18 N4 ? ? ? 1_555 C DG 12 O6 ? ? C DC 18 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 18 O2 ? ? ? 1_555 C DG 12 N2 ? ? C DC 18 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DA 19 N1 ? ? ? 1_555 C DT 11 N3 ? ? C DA 19 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DA 19 N6 ? ? ? 1_555 C DT 11 O4 ? ? C DA 19 D DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DC 20 N3 ? ? ? 1_555 C DG 10 N1 ? ? C DC 20 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 20 N4 ? ? ? 1_555 C DG 10 O6 ? ? C DC 20 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 20 O2 ? ? ? 1_555 C DG 10 N2 ? ? C DC 20 D DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DA 21 N1 ? ? ? 1_555 C DT 9 N3 ? ? C DA 21 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B DA 21 N6 ? ? ? 1_555 C DT 9 O4 ? ? C DA 21 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B DC 22 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 22 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B DC 22 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 22 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B DC 22 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 22 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B DA 23 N1 ? ? ? 1_555 C DT 7 N3 ? ? C DA 23 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B DA 23 N6 ? ? ? 1_555 C DT 7 O4 ? ? C DA 23 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B DC 24 N3 ? ? ? 1_555 C DG 6 N1 ? ? C DC 24 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B DC 24 N4 ? ? ? 1_555 C DG 6 O6 ? ? C DC 24 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B DC 24 O2 ? ? ? 1_555 C DG 6 N2 ? ? C DC 24 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B DC 25 N3 ? ? ? 1_555 C DG 5 N1 ? ? C DC 25 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B DC 25 N4 ? ? ? 1_555 C DG 5 O6 ? ? C DC 25 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B DC 25 O2 ? ? ? 1_555 C DG 5 N2 ? ? C DC 25 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B DA 26 N1 ? ? ? 1_555 C DT 4 N3 ? ? C DA 26 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B DA 26 N6 ? ? ? 1_555 C DT 4 O4 ? ? C DA 26 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B DG 27 N1 ? ? ? 1_555 C DC 3 N3 ? ? C DG 27 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B DG 27 N2 ? ? ? 1_555 C DC 3 O2 ? ? C DG 27 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B DG 27 O6 ? ? ? 1_555 C DC 3 N4 ? ? C DG 27 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B DG 28 N1 ? ? ? 1_555 C DC 2 N3 ? ? C DG 28 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B DG 28 N2 ? ? ? 1_555 C DC 2 O2 ? ? C DG 28 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B DG 28 O6 ? ? ? 1_555 C DC 2 N4 ? ? C DG 28 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B DT 29 N3 ? ? ? 1_555 C DA 1 N1 ? ? C DT 29 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B DT 29 O4 ? ? ? 1_555 C DA 1 N6 ? ? C DT 29 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 65 A . ? PHE 424 A GLY 66 A ? GLY 425 A 1 -2.72 2 LYS 67 A . ? LYS 426 A LEU 68 A ? LEU 427 A 1 4.34 3 PRO 115 A . ? PRO 474 A ASP 116 A ? ASP 475 A 1 0.56 4 PRO 140 A . ? PRO 499 A ASN 141 A ? ASN 500 A 1 7.21 5 ASN 141 A . ? ASN 500 A HIS 142 A ? HIS 501 A 1 6.58 6 ASN 149 A . ? ASN 508 A PHE 150 A ? PHE 509 A 1 -11.83 7 GLY 160 A . ? GLY 519 A PRO 161 A ? PRO 520 A 1 2.09 8 ALA 237 A . ? ALA 596 A LYS 238 A ? LYS 597 A 1 5.64 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 59 ? TYR A 60 ? VAL A 418 TYR A 419 A 2 LYS A 78 ? THR A 79 ? LYS A 437 THR A 438 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 59 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 418 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id THR _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 79 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id THR _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 438 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CA _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE CA A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 PRO A 144 ? PRO A 503 . ? 1_555 ? 2 AC1 3 GLY A 145 ? GLY A 504 . ? 1_555 ? 3 AC1 3 GLU A 147 ? GLU A 506 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UKG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UKG _atom_sites.fract_transf_matrix[1][1] 0.024634 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009714 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008565 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 360 360 LYS LYS A . n A 1 2 ALA 2 361 361 ALA ALA A . n A 1 3 SER 3 362 362 SER SER A . n A 1 4 PHE 4 363 363 PHE PHE A . n A 1 5 THR 5 364 364 THR THR A . n A 1 6 ASP 6 365 365 ASP ASP A . n A 1 7 GLU 7 366 366 GLU GLU A . n A 1 8 GLU 8 367 367 GLU GLU A . n A 1 9 ASP 9 368 368 ASP ASP A . n A 1 10 GLU 10 369 369 GLU GLU A . n A 1 11 PHE 11 370 370 PHE PHE A . n A 1 12 ILE 12 371 371 ILE ILE A . n A 1 13 LEU 13 372 372 LEU LEU A . n A 1 14 ASP 14 373 373 ASP ASP A . n A 1 15 VAL 15 374 374 VAL VAL A . n A 1 16 VAL 16 375 375 VAL VAL A . n A 1 17 ARG 17 376 376 ARG ARG A . n A 1 18 LYS 18 377 377 LYS LYS A . n A 1 19 ASN 19 378 378 ASN ASN A . n A 1 20 PRO 20 379 379 PRO PRO A . n A 1 21 THR 21 380 380 THR THR A . n A 1 22 ARG 22 381 381 ARG ARG A . n A 1 23 ARG 23 382 382 ARG ARG A . n A 1 24 THR 24 383 383 THR THR A . n A 1 25 THR 25 384 384 THR THR A . n A 1 26 HIS 26 385 385 HIS HIS A . n A 1 27 THR 27 386 386 THR THR A . n A 1 28 LEU 28 387 387 LEU LEU A . n A 1 29 TYR 29 388 388 TYR TYR A . n A 1 30 ASP 30 389 389 ASP ASP A . n A 1 31 GLU 31 390 390 GLU GLU A . n A 1 32 ILE 32 391 391 ILE ILE A . n A 1 33 SER 33 392 392 SER SER A . n A 1 34 HIS 34 393 393 HIS HIS A . n A 1 35 TYR 35 394 394 TYR TYR A . n A 1 36 VAL 36 395 395 VAL VAL A . n A 1 37 PRO 37 396 396 PRO PRO A . n A 1 38 ASN 38 397 397 ASN ASN A . n A 1 39 HIS 39 398 398 HIS HIS A . n A 1 40 THR 40 399 399 THR THR A . n A 1 41 GLY 41 400 400 GLY GLY A . n A 1 42 ASN 42 401 401 ASN ASN A . n A 1 43 SER 43 402 402 SER SER A . n A 1 44 ILE 44 403 403 ILE ILE A . n A 1 45 ARG 45 404 404 ARG ARG A . n A 1 46 HIS 46 405 405 HIS HIS A . n A 1 47 ARG 47 406 406 ARG ARG A . n A 1 48 PHE 48 407 407 PHE PHE A . n A 1 49 ARG 49 408 408 ARG ARG A . n A 1 50 VAL 50 409 409 VAL VAL A . n A 1 51 TYR 51 410 410 TYR TYR A . n A 1 52 LEU 52 411 411 LEU LEU A . n A 1 53 SER 53 412 412 SER SER A . n A 1 54 LYS 54 413 413 LYS LYS A . n A 1 55 ARG 55 414 414 ARG ARG A . n A 1 56 LEU 56 415 415 LEU LEU A . n A 1 57 GLU 57 416 416 GLU GLU A . n A 1 58 TYR 58 417 417 TYR TYR A . n A 1 59 VAL 59 418 418 VAL VAL A . n A 1 60 TYR 60 419 419 TYR TYR A . n A 1 61 GLU 61 420 420 GLU GLU A . n A 1 62 VAL 62 421 421 VAL VAL A . n A 1 63 ASP 63 422 422 ASP ASP A . n A 1 64 LYS 64 423 423 LYS LYS A . n A 1 65 PHE 65 424 424 PHE PHE A . n A 1 66 GLY 66 425 425 GLY GLY A . n A 1 67 LYS 67 426 426 LYS LYS A . n A 1 68 LEU 68 427 427 LEU LEU A . n A 1 69 VAL 69 428 428 VAL VAL A . n A 1 70 ARG 70 429 429 ARG ARG A . n A 1 71 ASP 71 430 430 ASP ASP A . n A 1 72 ASP 72 431 431 ASP ASP A . n A 1 73 ASP 73 432 432 ASP ASP A . n A 1 74 GLY 74 433 433 GLY GLY A . n A 1 75 ASN 75 434 434 ASN ASN A . n A 1 76 LEU 76 435 435 LEU LEU A . n A 1 77 ILE 77 436 436 ILE ILE A . n A 1 78 LYS 78 437 437 LYS LYS A . n A 1 79 THR 79 438 438 THR THR A . n A 1 80 LYS 80 439 439 LYS LYS A . n A 1 81 VAL 81 440 440 VAL VAL A . n A 1 82 LEU 82 441 441 LEU LEU A . n A 1 83 PRO 83 442 442 PRO PRO A . n A 1 84 PRO 84 443 443 PRO PRO A . n A 1 85 SER 85 444 444 SER SER A . n A 1 86 ILE 86 445 445 ILE ILE A . n A 1 87 LYS 87 446 446 LYS LYS A . n A 1 88 ARG 88 447 447 ARG ARG A . n A 1 89 LYS 89 448 448 LYS LYS A . n A 1 90 PHE 90 449 449 PHE PHE A . n A 1 91 SER 91 450 450 SER SER A . n A 1 92 ALA 92 451 451 ALA ALA A . n A 1 93 ASP 93 452 452 ASP ASP A . n A 1 94 GLU 94 453 453 GLU GLU A . n A 1 95 ASP 95 454 454 ASP ASP A . n A 1 96 TYR 96 455 455 TYR TYR A . n A 1 97 THR 97 456 456 THR THR A . n A 1 98 LEU 98 457 457 LEU LEU A . n A 1 99 ALA 99 458 458 ALA ALA A . n A 1 100 ILE 100 459 459 ILE ILE A . n A 1 101 ALA 101 460 460 ALA ALA A . n A 1 102 VAL 102 461 461 VAL VAL A . n A 1 103 LYS 103 462 462 LYS LYS A . n A 1 104 LYS 104 463 463 LYS LYS A . n A 1 105 GLN 105 464 464 GLN GLN A . n A 1 106 PHE 106 465 465 PHE PHE A . n A 1 107 TYR 107 466 466 TYR TYR A . n A 1 108 ARG 108 467 467 ARG ARG A . n A 1 109 ASP 109 468 468 ASP ASP A . n A 1 110 LEU 110 469 469 LEU LEU A . n A 1 111 PHE 111 470 470 PHE PHE A . n A 1 112 GLN 112 471 471 GLN GLN A . n A 1 113 ILE 113 472 472 ILE ILE A . n A 1 114 ASP 114 473 473 ASP ASP A . n A 1 115 PRO 115 474 474 PRO PRO A . n A 1 116 ASP 116 475 475 ASP ASP A . n A 1 117 THR 117 476 476 THR THR A . n A 1 118 GLY 118 477 477 GLY GLY A . n A 1 119 ARG 119 478 478 ARG ARG A . n A 1 120 SER 120 479 479 SER SER A . n A 1 121 LEU 121 480 ? ? ? A . n A 1 122 ILE 122 481 ? ? ? A . n A 1 123 THR 123 482 ? ? ? A . n A 1 124 ASP 124 483 ? ? ? A . n A 1 125 GLU 125 484 ? ? ? A . n A 1 126 ASP 126 485 ? ? ? A . n A 1 127 THR 127 486 ? ? ? A . n A 1 128 PRO 128 487 ? ? ? A . n A 1 129 THR 129 488 ? ? ? A . n A 1 130 ALA 130 489 ? ? ? A . n A 1 131 ILE 131 490 ? ? ? A . n A 1 132 ALA 132 491 ? ? ? A . n A 1 133 ARG 133 492 ? ? ? A . n A 1 134 ARG 134 493 ? ? ? A . n A 1 135 ASN 135 494 ? ? ? A . n A 1 136 MET 136 495 ? ? ? A . n A 1 137 THR 137 496 ? ? ? A . n A 1 138 MET 138 497 ? ? ? A . n A 1 139 ASP 139 498 ? ? ? A . n A 1 140 PRO 140 499 499 PRO PRO A . n A 1 141 ASN 141 500 500 ASN ASN A . n A 1 142 HIS 142 501 501 HIS HIS A . n A 1 143 VAL 143 502 502 VAL VAL A . n A 1 144 PRO 144 503 503 PRO PRO A . n A 1 145 GLY 145 504 504 GLY GLY A . n A 1 146 SER 146 505 505 SER SER A . n A 1 147 GLU 147 506 506 GLU GLU A . n A 1 148 PRO 148 507 507 PRO PRO A . n A 1 149 ASN 149 508 508 ASN ASN A . n A 1 150 PHE 150 509 509 PHE PHE A . n A 1 151 ALA 151 510 510 ALA ALA A . n A 1 152 ALA 152 511 511 ALA ALA A . n A 1 153 TYR 153 512 512 TYR TYR A . n A 1 154 ARG 154 513 513 ARG ARG A . n A 1 155 THR 155 514 514 THR THR A . n A 1 156 GLN 156 515 515 GLN GLN A . n A 1 157 SER 157 516 516 SER SER A . n A 1 158 ARG 158 517 517 ARG ARG A . n A 1 159 ARG 159 518 518 ARG ARG A . n A 1 160 GLY 160 519 519 GLY GLY A . n A 1 161 PRO 161 520 520 PRO PRO A . n A 1 162 ILE 162 521 521 ILE ILE A . n A 1 163 ALA 163 522 522 ALA ALA A . n A 1 164 ARG 164 523 523 ARG ARG A . n A 1 165 GLU 165 524 524 GLU GLU A . n A 1 166 PHE 166 525 525 PHE PHE A . n A 1 167 PHE 167 526 526 PHE PHE A . n A 1 168 LYS 168 527 527 LYS LYS A . n A 1 169 HIS 169 528 528 HIS HIS A . n A 1 170 PHE 170 529 529 PHE PHE A . n A 1 171 ALA 171 530 530 ALA ALA A . n A 1 172 GLU 172 531 531 GLU GLU A . n A 1 173 GLU 173 532 532 GLU GLU A . n A 1 174 HIS 174 533 533 HIS HIS A . n A 1 175 ALA 175 534 534 ALA ALA A . n A 1 176 ALA 176 535 535 ALA ALA A . n A 1 177 HIS 177 536 536 HIS HIS A . n A 1 178 THR 178 537 537 THR THR A . n A 1 179 GLU 179 538 538 GLU GLU A . n A 1 180 ASN 180 539 539 ASN ASN A . n A 1 181 ALA 181 540 540 ALA ALA A . n A 1 182 TRP 182 541 541 TRP TRP A . n A 1 183 ARG 183 542 542 ARG ARG A . n A 1 184 ASP 184 543 543 ASP ASP A . n A 1 185 ARG 185 544 544 ARG ARG A . n A 1 186 PHE 186 545 545 PHE PHE A . n A 1 187 ARG 187 546 546 ARG ARG A . n A 1 188 LYS 188 547 547 LYS LYS A . n A 1 189 PHE 189 548 548 PHE PHE A . n A 1 190 LEU 190 549 549 LEU LEU A . n A 1 191 LEU 191 550 550 LEU LEU A . n A 1 192 ALA 192 551 551 ALA ALA A . n A 1 193 TYR 193 552 552 TYR TYR A . n A 1 194 GLY 194 553 553 GLY GLY A . n A 1 195 ILE 195 554 554 ILE ILE A . n A 1 196 ASP 196 555 555 ASP ASP A . n A 1 197 ASP 197 556 556 ASP ASP A . n A 1 198 TYR 198 557 557 TYR TYR A . n A 1 199 ILE 199 558 558 ILE ILE A . n A 1 200 SER 200 559 559 SER SER A . n A 1 201 TYR 201 560 560 TYR TYR A . n A 1 202 TYR 202 561 561 TYR TYR A . n A 1 203 GLU 203 562 562 GLU GLU A . n A 1 204 ALA 204 563 563 ALA ALA A . n A 1 205 GLU 205 564 564 GLU GLU A . n A 1 206 LYS 206 565 565 LYS LYS A . n A 1 207 ALA 207 566 566 ALA ALA A . n A 1 208 GLN 208 567 567 GLN GLN A . n A 1 209 ASN 209 568 568 ASN ASN A . n A 1 210 ARG 210 569 569 ARG ARG A . n A 1 211 GLU 211 570 570 GLU GLU A . n A 1 212 PRO 212 571 571 PRO PRO A . n A 1 213 GLU 213 572 572 GLU GLU A . n A 1 214 PRO 214 573 573 PRO PRO A . n A 1 215 MET 215 574 574 MET MET A . n A 1 216 LYS 216 575 575 LYS LYS A . n A 1 217 ASN 217 576 576 ASN ASN A . n A 1 218 LEU 218 577 577 LEU LEU A . n A 1 219 THR 219 578 578 THR THR A . n A 1 220 ASN 220 579 579 ASN ASN A . n A 1 221 ARG 221 580 580 ARG ARG A . n A 1 222 PRO 222 581 581 PRO PRO A . n A 1 223 LYS 223 582 582 LYS LYS A . n A 1 224 ARG 224 583 583 ARG ARG A . n A 1 225 PRO 225 584 584 PRO PRO A . n A 1 226 GLY 226 585 585 GLY GLY A . n A 1 227 VAL 227 586 586 VAL VAL A . n A 1 228 PRO 228 587 587 PRO PRO A . n A 1 229 THR 229 588 588 THR THR A . n A 1 230 PRO 230 589 589 PRO PRO A . n A 1 231 GLY 231 590 590 GLY GLY A . n A 1 232 ASN 232 591 591 ASN ASN A . n A 1 233 TYR 233 592 592 TYR TYR A . n A 1 234 ASN 234 593 593 ASN ASN A . n A 1 235 SER 235 594 594 SER SER A . n A 1 236 ALA 236 595 595 ALA ALA A . n A 1 237 ALA 237 596 596 ALA ALA A . n A 1 238 LYS 238 597 597 LYS LYS A . n A 1 239 ARG 239 598 598 ARG ARG A . n A 1 240 ALA 240 599 599 ALA ALA A . n A 1 241 ARG 241 600 600 ARG ARG A . n A 1 242 ASN 242 601 601 ASN ASN A . n B 2 1 DG 1 1 1 DG G C . n B 2 2 DA 2 2 2 DA A C . n B 2 3 DA 3 3 3 DA A C . n B 2 4 DC 4 4 4 DC C C . n B 2 5 DA 5 5 5 DA A C . n B 2 6 DC 6 6 6 DC C C . n B 2 7 DC 7 7 7 DC C C . n B 2 8 DA 8 8 8 DA A C . n B 2 9 DC 9 9 9 DC C C . n B 2 10 DA 10 10 10 DA A C . n B 2 11 DC 11 11 11 DC C C . n B 2 12 DA 12 12 12 DA A C . n B 2 13 DA 13 13 13 DA A C . n B 2 14 DC 14 14 14 DC C C . n B 2 15 DA 15 15 15 DA A C . n B 2 16 DC 16 16 16 DC C C . n B 2 17 DC 17 17 17 DC C C . n B 2 18 DC 18 18 18 DC C C . n B 2 19 DA 19 19 19 DA A C . n B 2 20 DC 20 20 20 DC C C . n B 2 21 DA 21 21 21 DA A C . n B 2 22 DC 22 22 22 DC C C . n B 2 23 DA 23 23 23 DA A C . n B 2 24 DC 24 24 24 DC C C . n B 2 25 DC 25 25 25 DC C C . n B 2 26 DA 26 26 26 DA A C . n B 2 27 DG 27 27 27 DG G C . n B 2 28 DG 28 28 28 DG G C . n B 2 29 DT 29 29 29 DT T C . n B 2 30 DG 30 30 30 DG G C . n B 2 31 DT 31 31 31 DT T C . n C 3 1 DA 1 1 1 DA A D . n C 3 2 DC 2 2 2 DC C D . n C 3 3 DC 3 3 3 DC C D . n C 3 4 DT 4 4 4 DT T D . n C 3 5 DG 5 5 5 DG G D . n C 3 6 DG 6 6 6 DG G D . n C 3 7 DT 7 7 7 DT T D . n C 3 8 DG 8 8 8 DG G D . n C 3 9 DT 9 9 9 DT T D . n C 3 10 DG 10 10 10 DG G D . n C 3 11 DT 11 11 11 DT T D . n C 3 12 DG 12 12 12 DG G D . n C 3 13 DG 13 13 13 DG G D . n C 3 14 DG 14 14 14 DG G D . n C 3 15 DT 15 15 15 DT T D . n C 3 16 DG 16 16 16 DG G D . n C 3 17 DT 17 17 17 DT T D . n C 3 18 DT 18 18 18 DT T D . n C 3 19 DG 19 19 19 DG G D . n C 3 20 DT 20 20 20 DT T D . n C 3 21 DG 21 21 21 DG G D . n C 3 22 DT 22 22 22 DT T D . n C 3 23 DG 23 23 23 DG G D . n C 3 24 DG 24 24 24 DG G D . n C 3 25 DT 25 25 25 DT T D . n C 3 26 DG 26 26 26 DG G D . n C 3 27 DT 27 27 27 DT T D . n C 3 28 DT 28 28 28 DT T D . n C 3 29 DC 29 29 29 DC C D . n C 3 30 DA 30 30 30 DA A D . n C 3 31 DC 31 31 31 DC C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 1 1 CA CA A . E 5 HOH 1 2 2 HOH HOH A . E 5 HOH 2 4 4 HOH HOH A . E 5 HOH 3 5 5 HOH HOH A . E 5 HOH 4 6 6 HOH HOH A . E 5 HOH 5 7 7 HOH HOH A . E 5 HOH 6 11 11 HOH HOH A . E 5 HOH 7 12 12 HOH HOH A . E 5 HOH 8 13 13 HOH HOH A . E 5 HOH 9 14 14 HOH HOH A . F 5 HOH 1 32 1 HOH HOH C . F 5 HOH 2 33 8 HOH HOH C . G 5 HOH 1 32 3 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7750 ? 1 MORE -33 ? 1 'SSA (A^2)' 22490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id OE2 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id GLU _pdbx_struct_conn_angle.ptnr1_label_seq_id 147 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr1_auth_seq_id 506 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id CA _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id D _pdbx_struct_conn_angle.ptnr2_label_comp_id CA _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id CA _pdbx_struct_conn_angle.ptnr2_auth_seq_id 1 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OE1 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id GLU _pdbx_struct_conn_angle.ptnr3_label_seq_id 147 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id GLU _pdbx_struct_conn_angle.ptnr3_auth_seq_id 506 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 46.0 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-07 2 'Structure model' 1 1 2012-01-11 3 'Structure model' 1 2 2012-05-09 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 4 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 5 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 15 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -24.7280 8.9443 -24.8040 -0.3040 0.0160 0.3040 0.0326 0.0095 -0.1520 7.7624 3.6560 6.2454 0.3537 2.9104 2.9104 0.2384 0.3329 -0.4997 -0.4133 -0.2792 0.5151 0.5442 -0.5442 0.0409 'X-RAY DIFFRACTION' 2 ? refined -4.0240 35.0650 -16.8153 -0.3040 0.1824 0.3040 0.0191 -0.0099 0.0195 5.2410 4.0685 0.3647 2.1284 -0.0400 0.0331 0.0396 0.5442 0.5442 -0.3837 -0.1176 -0.3025 -0.5378 0.0492 0.0780 'X-RAY DIFFRACTION' 3 ? refined -19.5357 5.9875 -7.6423 -0.3040 -0.3040 0.3040 -0.0198 0.0206 0.0057 2.5594 3.0414 2.1242 1.5555 0.2468 -0.0363 0.2560 -0.0253 -0.5442 0.5442 -0.2521 -0.0608 0.5442 -0.0048 -0.0039 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 360 A 447 '{ A|360 - A|447 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 448 A 479 '{ A|448 - A|479 A|499 - A|601 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 499 A 601 '{ A|448 - A|479 A|499 - A|601 }' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 3 D 1 D 31 '{ C|1 -C|31 D|1 - D|31 }' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 BUSTER refinement 2.8.0 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 7 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 7 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.376 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.043 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 111.32 108.30 3.02 0.30 N 2 1 "O4'" C DA 2 ? ? "C1'" C DA 2 ? ? N9 C DA 2 ? ? 110.39 108.30 2.09 0.30 N 3 1 "C3'" C DA 2 ? ? "O3'" C DA 2 ? ? P C DA 3 ? ? 130.88 119.70 11.18 1.20 Y 4 1 "O4'" C DA 3 ? ? "C1'" C DA 3 ? ? N9 C DA 3 ? ? 114.06 108.30 5.76 0.30 N 5 1 "C3'" C DA 3 ? ? "O3'" C DA 3 ? ? P C DC 4 ? ? 131.46 119.70 11.76 1.20 Y 6 1 "O4'" C DC 4 ? ? "C1'" C DC 4 ? ? N1 C DC 4 ? ? 111.65 108.30 3.35 0.30 N 7 1 "C3'" C DC 4 ? ? "O3'" C DC 4 ? ? P C DA 5 ? ? 131.81 119.70 12.11 1.20 Y 8 1 "O4'" C DA 5 ? ? "C1'" C DA 5 ? ? N9 C DA 5 ? ? 117.06 108.30 8.76 0.30 N 9 1 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 115.51 108.30 7.21 0.30 N 10 1 "C3'" C DC 6 ? ? "O3'" C DC 6 ? ? P C DC 7 ? ? 132.99 119.70 13.29 1.20 Y 11 1 "O4'" C DC 7 ? ? "C1'" C DC 7 ? ? N1 C DC 7 ? ? 115.81 108.30 7.51 0.30 N 12 1 "O4'" C DA 8 ? ? "C1'" C DA 8 ? ? N9 C DA 8 ? ? 113.13 108.30 4.83 0.30 N 13 1 "C3'" C DA 8 ? ? "O3'" C DA 8 ? ? P C DC 9 ? ? 128.62 119.70 8.92 1.20 Y 14 1 "O4'" C DC 9 ? ? "C4'" C DC 9 ? ? "C3'" C DC 9 ? ? 101.26 104.50 -3.24 0.40 N 15 1 "C1'" C DC 9 ? ? "O4'" C DC 9 ? ? "C4'" C DC 9 ? ? 99.69 110.10 -10.41 1.00 N 16 1 N1 C DC 9 ? ? "C1'" C DC 9 ? ? "C2'" C DC 9 ? ? 125.63 114.30 11.33 1.40 N 17 1 "O4'" C DC 9 ? ? "C1'" C DC 9 ? ? N1 C DC 9 ? ? 114.82 108.30 6.52 0.30 N 18 1 "C3'" C DA 10 ? ? "O3'" C DA 10 ? ? P C DC 11 ? ? 128.62 119.70 8.92 1.20 Y 19 1 N1 C DC 11 ? ? "C1'" C DC 11 ? ? "C2'" C DC 11 ? ? 122.73 114.30 8.43 1.40 N 20 1 "O4'" C DC 11 ? ? "C1'" C DC 11 ? ? N1 C DC 11 ? ? 114.37 108.30 6.07 0.30 N 21 1 "C3'" C DC 11 ? ? "O3'" C DC 11 ? ? P C DA 12 ? ? 128.53 119.70 8.83 1.20 Y 22 1 "C3'" C DA 13 ? ? "O3'" C DA 13 ? ? P C DC 14 ? ? 127.67 119.70 7.97 1.20 Y 23 1 "C3'" C DC 14 ? ? "O3'" C DC 14 ? ? P C DA 15 ? ? 127.07 119.70 7.37 1.20 Y 24 1 "C3'" C DA 15 ? ? "O3'" C DA 15 ? ? P C DC 16 ? ? 127.75 119.70 8.05 1.20 Y 25 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 110.12 108.30 1.82 0.30 N 26 1 "C3'" C DC 16 ? ? "O3'" C DC 16 ? ? P C DC 17 ? ? 127.01 119.70 7.31 1.20 Y 27 1 "O4'" C DC 18 ? ? "C1'" C DC 18 ? ? N1 C DC 18 ? ? 110.74 108.30 2.44 0.30 N 28 1 "C3'" C DC 18 ? ? "O3'" C DC 18 ? ? P C DA 19 ? ? 128.23 119.70 8.53 1.20 Y 29 1 P C DA 19 ? ? "O5'" C DA 19 ? ? "C5'" C DA 19 ? ? 132.05 120.90 11.15 1.60 N 30 1 "C5'" C DA 19 ? ? "C4'" C DA 19 ? ? "C3'" C DA 19 ? ? 123.33 115.70 7.63 1.20 N 31 1 "C3'" C DA 19 ? ? "O3'" C DA 19 ? ? P C DC 20 ? ? 133.69 119.70 13.99 1.20 Y 32 1 "C3'" C DC 20 ? ? "C2'" C DC 20 ? ? "C1'" C DC 20 ? ? 96.33 102.40 -6.07 0.80 N 33 1 "O4'" C DA 21 ? ? "C1'" C DA 21 ? ? N9 C DA 21 ? ? 102.11 108.00 -5.89 0.70 N 34 1 "O4'" C DC 22 ? ? "C1'" C DC 22 ? ? N1 C DC 22 ? ? 113.22 108.30 4.92 0.30 N 35 1 "C3'" C DC 22 ? ? "O3'" C DC 22 ? ? P C DA 23 ? ? 133.78 119.70 14.08 1.20 Y 36 1 "O4'" C DA 23 ? ? "C4'" C DA 23 ? ? "C3'" C DA 23 ? ? 101.40 104.50 -3.10 0.40 N 37 1 "O4'" C DC 24 ? ? "C1'" C DC 24 ? ? N1 C DC 24 ? ? 114.60 108.30 6.30 0.30 N 38 1 "C3'" C DC 24 ? ? "O3'" C DC 24 ? ? P C DC 25 ? ? 129.98 119.70 10.28 1.20 Y 39 1 "O4'" C DC 25 ? ? "C1'" C DC 25 ? ? N1 C DC 25 ? ? 111.21 108.30 2.91 0.30 N 40 1 "C3'" C DG 27 ? ? "O3'" C DG 27 ? ? P C DG 28 ? ? 126.94 119.70 7.24 1.20 Y 41 1 "O4'" C DT 29 ? ? "C1'" C DT 29 ? ? N1 C DT 29 ? ? 111.68 108.30 3.38 0.30 N 42 1 "O4'" C DG 30 ? ? "C1'" C DG 30 ? ? N9 C DG 30 ? ? 113.02 108.30 4.72 0.30 N 43 1 "C3'" C DG 30 ? ? "O3'" C DG 30 ? ? P C DT 31 ? ? 129.99 119.70 10.29 1.20 Y 44 1 "C1'" C DT 31 ? ? "O4'" C DT 31 ? ? "C4'" C DT 31 ? ? 103.91 110.10 -6.19 1.00 N 45 1 "O4'" C DT 31 ? ? "C1'" C DT 31 ? ? N1 C DT 31 ? ? 117.61 108.30 9.31 0.30 N 46 1 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 112.73 108.30 4.43 0.30 N 47 1 "C3'" D DA 1 ? ? "O3'" D DA 1 ? ? P D DC 2 ? ? 130.93 119.70 11.23 1.20 Y 48 1 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 114.44 108.30 6.14 0.30 N 49 1 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 114.01 108.30 5.71 0.30 N 50 1 "O4'" D DT 7 ? ? "C1'" D DT 7 ? ? N1 D DT 7 ? ? 111.69 108.30 3.39 0.30 N 51 1 "C3'" D DT 7 ? ? "O3'" D DT 7 ? ? P D DG 8 ? ? 127.05 119.70 7.35 1.20 Y 52 1 "O4'" D DT 9 ? ? "C1'" D DT 9 ? ? "C2'" D DT 9 ? ? 100.53 105.90 -5.37 0.80 N 53 1 "O4'" D DG 10 ? ? "C1'" D DG 10 ? ? N9 D DG 10 ? ? 114.03 108.30 5.73 0.30 N 54 1 "C3'" D DG 10 ? ? "O3'" D DG 10 ? ? P D DT 11 ? ? 131.91 119.70 12.21 1.20 Y 55 1 N3 D DT 11 ? ? C2 D DT 11 ? ? O2 D DT 11 ? ? 118.19 122.30 -4.11 0.60 N 56 1 "O4'" D DG 13 ? ? "C1'" D DG 13 ? ? N9 D DG 13 ? ? 114.10 108.30 5.80 0.30 N 57 1 "O4'" D DT 15 ? ? "C1'" D DT 15 ? ? N1 D DT 15 ? ? 113.76 108.30 5.46 0.30 N 58 1 "O4'" D DT 18 ? ? "C1'" D DT 18 ? ? N1 D DT 18 ? ? 112.75 108.30 4.45 0.30 N 59 1 "C3'" D DG 19 ? ? "O3'" D DG 19 ? ? P D DT 20 ? ? 130.98 119.70 11.28 1.20 Y 60 1 "C3'" D DG 21 ? ? "O3'" D DG 21 ? ? P D DT 22 ? ? 127.07 119.70 7.37 1.20 Y 61 1 "O4'" D DT 22 ? ? "C1'" D DT 22 ? ? N1 D DT 22 ? ? 112.75 108.30 4.45 0.30 N 62 1 "C3'" D DT 22 ? ? "O3'" D DT 22 ? ? P D DG 23 ? ? 131.68 119.70 11.98 1.20 Y 63 1 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 113.22 108.30 4.92 0.30 N 64 1 "O4'" D DG 24 ? ? "C1'" D DG 24 ? ? N9 D DG 24 ? ? 113.39 108.30 5.09 0.30 N 65 1 "O4'" D DT 25 ? ? "C1'" D DT 25 ? ? N1 D DT 25 ? ? 110.58 108.30 2.28 0.30 N 66 1 "C3'" D DT 25 ? ? "O3'" D DT 25 ? ? P D DG 26 ? ? 127.79 119.70 8.09 1.20 Y 67 1 "O4'" D DG 26 ? ? "C1'" D DG 26 ? ? N9 D DG 26 ? ? 115.38 108.30 7.08 0.30 N 68 1 "O4'" D DT 27 ? ? "C1'" D DT 27 ? ? N1 D DT 27 ? ? 111.95 108.30 3.65 0.30 N 69 1 "C3'" D DT 27 ? ? "O3'" D DT 27 ? ? P D DT 28 ? ? 134.96 119.70 15.26 1.20 Y 70 1 "O4'" D DT 28 ? ? "C1'" D DT 28 ? ? N1 D DT 28 ? ? 113.50 108.30 5.20 0.30 N 71 1 "C3'" D DT 28 ? ? "O3'" D DT 28 ? ? P D DC 29 ? ? 129.15 119.70 9.46 1.20 Y 72 1 "O4'" D DC 29 ? ? "C1'" D DC 29 ? ? N1 D DC 29 ? ? 111.70 108.30 3.40 0.30 N 73 1 "O4'" D DC 31 ? ? "C1'" D DC 31 ? ? N1 D DC 31 ? ? 112.23 108.30 3.93 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 396 ? ? -43.80 -80.76 2 1 ASN A 397 ? ? -55.56 -3.14 3 1 GLU A 416 ? ? 65.57 -62.01 4 1 ASP A 430 ? ? -78.01 -165.73 5 1 SER A 444 ? ? -84.99 -157.49 6 1 ILE A 472 ? ? -122.74 -53.16 7 1 ASP A 473 ? ? 73.93 115.02 8 1 THR A 476 ? ? -133.08 -141.71 9 1 ARG A 478 ? ? 73.38 135.43 10 1 ASN A 500 ? ? 77.93 165.46 11 1 HIS A 501 ? ? -144.91 45.49 12 1 VAL A 502 ? ? 70.25 101.81 13 1 PRO A 507 ? ? -28.79 -50.06 14 1 ASN A 508 ? ? 28.50 123.64 15 1 PHE A 509 ? ? -173.84 -47.01 16 1 GLN A 515 ? ? 57.78 -123.11 17 1 PHE A 548 ? ? -108.81 -63.74 18 1 GLN A 567 ? ? -79.93 20.00 19 1 ASN A 568 ? ? 56.12 18.53 20 1 ARG A 583 ? ? -114.46 66.80 21 1 VAL A 586 ? ? 61.81 78.12 22 1 ASN A 591 ? ? -158.62 75.85 23 1 ALA A 596 ? ? 76.88 97.96 24 1 LYS A 597 ? ? 34.41 -121.24 25 1 ARG A 598 ? ? 16.23 59.26 26 1 ARG A 600 ? ? 52.54 19.60 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 582 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CD _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.label_seq_id 223 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 480 ? A LEU 121 2 1 Y 1 A ILE 481 ? A ILE 122 3 1 Y 1 A THR 482 ? A THR 123 4 1 Y 1 A ASP 483 ? A ASP 124 5 1 Y 1 A GLU 484 ? A GLU 125 6 1 Y 1 A ASP 485 ? A ASP 126 7 1 Y 1 A THR 486 ? A THR 127 8 1 Y 1 A PRO 487 ? A PRO 128 9 1 Y 1 A THR 488 ? A THR 129 10 1 Y 1 A ALA 489 ? A ALA 130 11 1 Y 1 A ILE 490 ? A ILE 131 12 1 Y 1 A ALA 491 ? A ALA 132 13 1 Y 1 A ARG 492 ? A ARG 133 14 1 Y 1 A ARG 493 ? A ARG 134 15 1 Y 1 A ASN 494 ? A ASN 135 16 1 Y 1 A MET 495 ? A MET 136 17 1 Y 1 A THR 496 ? A THR 137 18 1 Y 1 A MET 497 ? A MET 138 19 1 Y 1 A ASP 498 ? A ASP 139 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 DA OP3 O N N 75 DA P P N N 76 DA OP1 O N N 77 DA OP2 O N N 78 DA "O5'" O N N 79 DA "C5'" C N N 80 DA "C4'" C N R 81 DA "O4'" O N N 82 DA "C3'" C N S 83 DA "O3'" O N N 84 DA "C2'" C N N 85 DA "C1'" C N R 86 DA N9 N Y N 87 DA C8 C Y N 88 DA N7 N Y N 89 DA C5 C Y N 90 DA C6 C Y N 91 DA N6 N N N 92 DA N1 N Y N 93 DA C2 C Y N 94 DA N3 N Y N 95 DA C4 C Y N 96 DA HOP3 H N N 97 DA HOP2 H N N 98 DA "H5'" H N N 99 DA "H5''" H N N 100 DA "H4'" H N N 101 DA "H3'" H N N 102 DA "HO3'" H N N 103 DA "H2'" H N N 104 DA "H2''" H N N 105 DA "H1'" H N N 106 DA H8 H N N 107 DA H61 H N N 108 DA H62 H N N 109 DA H2 H N N 110 DC OP3 O N N 111 DC P P N N 112 DC OP1 O N N 113 DC OP2 O N N 114 DC "O5'" O N N 115 DC "C5'" C N N 116 DC "C4'" C N R 117 DC "O4'" O N N 118 DC "C3'" C N S 119 DC "O3'" O N N 120 DC "C2'" C N N 121 DC "C1'" C N R 122 DC N1 N N N 123 DC C2 C N N 124 DC O2 O N N 125 DC N3 N N N 126 DC C4 C N N 127 DC N4 N N N 128 DC C5 C N N 129 DC C6 C N N 130 DC HOP3 H N N 131 DC HOP2 H N N 132 DC "H5'" H N N 133 DC "H5''" H N N 134 DC "H4'" H N N 135 DC "H3'" H N N 136 DC "HO3'" H N N 137 DC "H2'" H N N 138 DC "H2''" H N N 139 DC "H1'" H N N 140 DC H41 H N N 141 DC H42 H N N 142 DC H5 H N N 143 DC H6 H N N 144 DG OP3 O N N 145 DG P P N N 146 DG OP1 O N N 147 DG OP2 O N N 148 DG "O5'" O N N 149 DG "C5'" C N N 150 DG "C4'" C N R 151 DG "O4'" O N N 152 DG "C3'" C N S 153 DG "O3'" O N N 154 DG "C2'" C N N 155 DG "C1'" C N R 156 DG N9 N Y N 157 DG C8 C Y N 158 DG N7 N Y N 159 DG C5 C Y N 160 DG C6 C N N 161 DG O6 O N N 162 DG N1 N N N 163 DG C2 C N N 164 DG N2 N N N 165 DG N3 N N N 166 DG C4 C Y N 167 DG HOP3 H N N 168 DG HOP2 H N N 169 DG "H5'" H N N 170 DG "H5''" H N N 171 DG "H4'" H N N 172 DG "H3'" H N N 173 DG "HO3'" H N N 174 DG "H2'" H N N 175 DG "H2''" H N N 176 DG "H1'" H N N 177 DG H8 H N N 178 DG H1 H N N 179 DG H21 H N N 180 DG H22 H N N 181 DT OP3 O N N 182 DT P P N N 183 DT OP1 O N N 184 DT OP2 O N N 185 DT "O5'" O N N 186 DT "C5'" C N N 187 DT "C4'" C N R 188 DT "O4'" O N N 189 DT "C3'" C N S 190 DT "O3'" O N N 191 DT "C2'" C N N 192 DT "C1'" C N R 193 DT N1 N N N 194 DT C2 C N N 195 DT O2 O N N 196 DT N3 N N N 197 DT C4 C N N 198 DT O4 O N N 199 DT C5 C N N 200 DT C7 C N N 201 DT C6 C N N 202 DT HOP3 H N N 203 DT HOP2 H N N 204 DT "H5'" H N N 205 DT "H5''" H N N 206 DT "H4'" H N N 207 DT "H3'" H N N 208 DT "HO3'" H N N 209 DT "H2'" H N N 210 DT "H2''" H N N 211 DT "H1'" H N N 212 DT H3 H N N 213 DT H71 H N N 214 DT H72 H N N 215 DT H73 H N N 216 DT H6 H N N 217 GLN N N N N 218 GLN CA C N S 219 GLN C C N N 220 GLN O O N N 221 GLN CB C N N 222 GLN CG C N N 223 GLN CD C N N 224 GLN OE1 O N N 225 GLN NE2 N N N 226 GLN OXT O N N 227 GLN H H N N 228 GLN H2 H N N 229 GLN HA H N N 230 GLN HB2 H N N 231 GLN HB3 H N N 232 GLN HG2 H N N 233 GLN HG3 H N N 234 GLN HE21 H N N 235 GLN HE22 H N N 236 GLN HXT H N N 237 GLU N N N N 238 GLU CA C N S 239 GLU C C N N 240 GLU O O N N 241 GLU CB C N N 242 GLU CG C N N 243 GLU CD C N N 244 GLU OE1 O N N 245 GLU OE2 O N N 246 GLU OXT O N N 247 GLU H H N N 248 GLU H2 H N N 249 GLU HA H N N 250 GLU HB2 H N N 251 GLU HB3 H N N 252 GLU HG2 H N N 253 GLU HG3 H N N 254 GLU HE2 H N N 255 GLU HXT H N N 256 GLY N N N N 257 GLY CA C N N 258 GLY C C N N 259 GLY O O N N 260 GLY OXT O N N 261 GLY H H N N 262 GLY H2 H N N 263 GLY HA2 H N N 264 GLY HA3 H N N 265 GLY HXT H N N 266 HIS N N N N 267 HIS CA C N S 268 HIS C C N N 269 HIS O O N N 270 HIS CB C N N 271 HIS CG C Y N 272 HIS ND1 N Y N 273 HIS CD2 C Y N 274 HIS CE1 C Y N 275 HIS NE2 N Y N 276 HIS OXT O N N 277 HIS H H N N 278 HIS H2 H N N 279 HIS HA H N N 280 HIS HB2 H N N 281 HIS HB3 H N N 282 HIS HD1 H N N 283 HIS HD2 H N N 284 HIS HE1 H N N 285 HIS HE2 H N N 286 HIS HXT H N N 287 HOH O O N N 288 HOH H1 H N N 289 HOH H2 H N N 290 ILE N N N N 291 ILE CA C N S 292 ILE C C N N 293 ILE O O N N 294 ILE CB C N S 295 ILE CG1 C N N 296 ILE CG2 C N N 297 ILE CD1 C N N 298 ILE OXT O N N 299 ILE H H N N 300 ILE H2 H N N 301 ILE HA H N N 302 ILE HB H N N 303 ILE HG12 H N N 304 ILE HG13 H N N 305 ILE HG21 H N N 306 ILE HG22 H N N 307 ILE HG23 H N N 308 ILE HD11 H N N 309 ILE HD12 H N N 310 ILE HD13 H N N 311 ILE HXT H N N 312 LEU N N N N 313 LEU CA C N S 314 LEU C C N N 315 LEU O O N N 316 LEU CB C N N 317 LEU CG C N N 318 LEU CD1 C N N 319 LEU CD2 C N N 320 LEU OXT O N N 321 LEU H H N N 322 LEU H2 H N N 323 LEU HA H N N 324 LEU HB2 H N N 325 LEU HB3 H N N 326 LEU HG H N N 327 LEU HD11 H N N 328 LEU HD12 H N N 329 LEU HD13 H N N 330 LEU HD21 H N N 331 LEU HD22 H N N 332 LEU HD23 H N N 333 LEU HXT H N N 334 LYS N N N N 335 LYS CA C N S 336 LYS C C N N 337 LYS O O N N 338 LYS CB C N N 339 LYS CG C N N 340 LYS CD C N N 341 LYS CE C N N 342 LYS NZ N N N 343 LYS OXT O N N 344 LYS H H N N 345 LYS H2 H N N 346 LYS HA H N N 347 LYS HB2 H N N 348 LYS HB3 H N N 349 LYS HG2 H N N 350 LYS HG3 H N N 351 LYS HD2 H N N 352 LYS HD3 H N N 353 LYS HE2 H N N 354 LYS HE3 H N N 355 LYS HZ1 H N N 356 LYS HZ2 H N N 357 LYS HZ3 H N N 358 LYS HXT H N N 359 MET N N N N 360 MET CA C N S 361 MET C C N N 362 MET O O N N 363 MET CB C N N 364 MET CG C N N 365 MET SD S N N 366 MET CE C N N 367 MET OXT O N N 368 MET H H N N 369 MET H2 H N N 370 MET HA H N N 371 MET HB2 H N N 372 MET HB3 H N N 373 MET HG2 H N N 374 MET HG3 H N N 375 MET HE1 H N N 376 MET HE2 H N N 377 MET HE3 H N N 378 MET HXT H N N 379 PHE N N N N 380 PHE CA C N S 381 PHE C C N N 382 PHE O O N N 383 PHE CB C N N 384 PHE CG C Y N 385 PHE CD1 C Y N 386 PHE CD2 C Y N 387 PHE CE1 C Y N 388 PHE CE2 C Y N 389 PHE CZ C Y N 390 PHE OXT O N N 391 PHE H H N N 392 PHE H2 H N N 393 PHE HA H N N 394 PHE HB2 H N N 395 PHE HB3 H N N 396 PHE HD1 H N N 397 PHE HD2 H N N 398 PHE HE1 H N N 399 PHE HE2 H N N 400 PHE HZ H N N 401 PHE HXT H N N 402 PRO N N N N 403 PRO CA C N S 404 PRO C C N N 405 PRO O O N N 406 PRO CB C N N 407 PRO CG C N N 408 PRO CD C N N 409 PRO OXT O N N 410 PRO H H N N 411 PRO HA H N N 412 PRO HB2 H N N 413 PRO HB3 H N N 414 PRO HG2 H N N 415 PRO HG3 H N N 416 PRO HD2 H N N 417 PRO HD3 H N N 418 PRO HXT H N N 419 SER N N N N 420 SER CA C N S 421 SER C C N N 422 SER O O N N 423 SER CB C N N 424 SER OG O N N 425 SER OXT O N N 426 SER H H N N 427 SER H2 H N N 428 SER HA H N N 429 SER HB2 H N N 430 SER HB3 H N N 431 SER HG H N N 432 SER HXT H N N 433 THR N N N N 434 THR CA C N S 435 THR C C N N 436 THR O O N N 437 THR CB C N R 438 THR OG1 O N N 439 THR CG2 C N N 440 THR OXT O N N 441 THR H H N N 442 THR H2 H N N 443 THR HA H N N 444 THR HB H N N 445 THR HG1 H N N 446 THR HG21 H N N 447 THR HG22 H N N 448 THR HG23 H N N 449 THR HXT H N N 450 TRP N N N N 451 TRP CA C N S 452 TRP C C N N 453 TRP O O N N 454 TRP CB C N N 455 TRP CG C Y N 456 TRP CD1 C Y N 457 TRP CD2 C Y N 458 TRP NE1 N Y N 459 TRP CE2 C Y N 460 TRP CE3 C Y N 461 TRP CZ2 C Y N 462 TRP CZ3 C Y N 463 TRP CH2 C Y N 464 TRP OXT O N N 465 TRP H H N N 466 TRP H2 H N N 467 TRP HA H N N 468 TRP HB2 H N N 469 TRP HB3 H N N 470 TRP HD1 H N N 471 TRP HE1 H N N 472 TRP HE3 H N N 473 TRP HZ2 H N N 474 TRP HZ3 H N N 475 TRP HH2 H N N 476 TRP HXT H N N 477 TYR N N N N 478 TYR CA C N S 479 TYR C C N N 480 TYR O O N N 481 TYR CB C N N 482 TYR CG C Y N 483 TYR CD1 C Y N 484 TYR CD2 C Y N 485 TYR CE1 C Y N 486 TYR CE2 C Y N 487 TYR CZ C Y N 488 TYR OH O N N 489 TYR OXT O N N 490 TYR H H N N 491 TYR H2 H N N 492 TYR HA H N N 493 TYR HB2 H N N 494 TYR HB3 H N N 495 TYR HD1 H N N 496 TYR HD2 H N N 497 TYR HE1 H N N 498 TYR HE2 H N N 499 TYR HH H N N 500 TYR HXT H N N 501 VAL N N N N 502 VAL CA C N S 503 VAL C C N N 504 VAL O O N N 505 VAL CB C N N 506 VAL CG1 C N N 507 VAL CG2 C N N 508 VAL OXT O N N 509 VAL H H N N 510 VAL H2 H N N 511 VAL HA H N N 512 VAL HB H N N 513 VAL HG11 H N N 514 VAL HG12 H N N 515 VAL HG13 H N N 516 VAL HG21 H N N 517 VAL HG22 H N N 518 VAL HG23 H N N 519 VAL HXT H N N 520 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PHE N CA sing N N 373 PHE N H sing N N 374 PHE N H2 sing N N 375 PHE CA C sing N N 376 PHE CA CB sing N N 377 PHE CA HA sing N N 378 PHE C O doub N N 379 PHE C OXT sing N N 380 PHE CB CG sing N N 381 PHE CB HB2 sing N N 382 PHE CB HB3 sing N N 383 PHE CG CD1 doub Y N 384 PHE CG CD2 sing Y N 385 PHE CD1 CE1 sing Y N 386 PHE CD1 HD1 sing N N 387 PHE CD2 CE2 doub Y N 388 PHE CD2 HD2 sing N N 389 PHE CE1 CZ doub Y N 390 PHE CE1 HE1 sing N N 391 PHE CE2 CZ sing Y N 392 PHE CE2 HE2 sing N N 393 PHE CZ HZ sing N N 394 PHE OXT HXT sing N N 395 PRO N CA sing N N 396 PRO N CD sing N N 397 PRO N H sing N N 398 PRO CA C sing N N 399 PRO CA CB sing N N 400 PRO CA HA sing N N 401 PRO C O doub N N 402 PRO C OXT sing N N 403 PRO CB CG sing N N 404 PRO CB HB2 sing N N 405 PRO CB HB3 sing N N 406 PRO CG CD sing N N 407 PRO CG HG2 sing N N 408 PRO CG HG3 sing N N 409 PRO CD HD2 sing N N 410 PRO CD HD3 sing N N 411 PRO OXT HXT sing N N 412 SER N CA sing N N 413 SER N H sing N N 414 SER N H2 sing N N 415 SER CA C sing N N 416 SER CA CB sing N N 417 SER CA HA sing N N 418 SER C O doub N N 419 SER C OXT sing N N 420 SER CB OG sing N N 421 SER CB HB2 sing N N 422 SER CB HB3 sing N N 423 SER OG HG sing N N 424 SER OXT HXT sing N N 425 THR N CA sing N N 426 THR N H sing N N 427 THR N H2 sing N N 428 THR CA C sing N N 429 THR CA CB sing N N 430 THR CA HA sing N N 431 THR C O doub N N 432 THR C OXT sing N N 433 THR CB OG1 sing N N 434 THR CB CG2 sing N N 435 THR CB HB sing N N 436 THR OG1 HG1 sing N N 437 THR CG2 HG21 sing N N 438 THR CG2 HG22 sing N N 439 THR CG2 HG23 sing N N 440 THR OXT HXT sing N N 441 TRP N CA sing N N 442 TRP N H sing N N 443 TRP N H2 sing N N 444 TRP CA C sing N N 445 TRP CA CB sing N N 446 TRP CA HA sing N N 447 TRP C O doub N N 448 TRP C OXT sing N N 449 TRP CB CG sing N N 450 TRP CB HB2 sing N N 451 TRP CB HB3 sing N N 452 TRP CG CD1 doub Y N 453 TRP CG CD2 sing Y N 454 TRP CD1 NE1 sing Y N 455 TRP CD1 HD1 sing N N 456 TRP CD2 CE2 doub Y N 457 TRP CD2 CE3 sing Y N 458 TRP NE1 CE2 sing Y N 459 TRP NE1 HE1 sing N N 460 TRP CE2 CZ2 sing Y N 461 TRP CE3 CZ3 doub Y N 462 TRP CE3 HE3 sing N N 463 TRP CZ2 CH2 doub Y N 464 TRP CZ2 HZ2 sing N N 465 TRP CZ3 CH2 sing Y N 466 TRP CZ3 HZ3 sing N N 467 TRP CH2 HH2 sing N N 468 TRP OXT HXT sing N N 469 TYR N CA sing N N 470 TYR N H sing N N 471 TYR N H2 sing N N 472 TYR CA C sing N N 473 TYR CA CB sing N N 474 TYR CA HA sing N N 475 TYR C O doub N N 476 TYR C OXT sing N N 477 TYR CB CG sing N N 478 TYR CB HB2 sing N N 479 TYR CB HB3 sing N N 480 TYR CG CD1 doub Y N 481 TYR CG CD2 sing Y N 482 TYR CD1 CE1 sing Y N 483 TYR CD1 HD1 sing N N 484 TYR CD2 CE2 doub Y N 485 TYR CD2 HD2 sing N N 486 TYR CE1 CZ doub Y N 487 TYR CE1 HE1 sing N N 488 TYR CE2 CZ sing Y N 489 TYR CE2 HE2 sing N N 490 TYR CZ OH sing N N 491 TYR OH HH sing N N 492 TYR OXT HXT sing N N 493 VAL N CA sing N N 494 VAL N H sing N N 495 VAL N H2 sing N N 496 VAL CA C sing N N 497 VAL CA CB sing N N 498 VAL CA HA sing N N 499 VAL C O doub N N 500 VAL C OXT sing N N 501 VAL CB CG1 sing N N 502 VAL CB CG2 sing N N 503 VAL CB HB sing N N 504 VAL CG1 HG11 sing N N 505 VAL CG1 HG12 sing N N 506 VAL CG1 HG13 sing N N 507 VAL CG2 HG21 sing N N 508 VAL CG2 HG22 sing N N 509 VAL CG2 HG23 sing N N 510 VAL OXT HXT sing N N 511 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3UKG 'double helix' 3UKG 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 29 1_555 0.458 0.331 0.329 30.226 20.455 5.672 1 C_DG1:DC29_D C 1 ? D 29 ? 19 1 1 B DC 4 1_555 C DG 26 1_555 -1.501 0.565 0.276 -1.248 -9.221 -31.741 2 C_DC4:DG26_D C 4 ? D 26 ? ? ? 1 B DC 7 1_555 C DG 23 1_555 0.813 -0.392 0.097 -3.454 -1.411 -3.422 3 C_DC7:DG23_D C 7 ? D 23 ? 19 1 1 B DA 8 1_555 C DT 22 1_555 -0.527 -0.172 0.426 -0.467 -7.342 2.521 4 C_DA8:DT22_D C 8 ? D 22 ? 20 1 1 B DC 9 1_555 C DG 21 1_555 -1.377 0.137 0.045 4.318 -3.223 -0.971 5 C_DC9:DG21_D C 9 ? D 21 ? 19 1 1 B DA 10 1_555 C DT 20 1_555 -0.481 -0.386 0.530 11.003 -7.546 -1.734 6 C_DA10:DT20_D C 10 ? D 20 ? 20 1 1 B DC 11 1_555 C DG 19 1_555 -0.718 0.001 0.156 4.135 -7.441 -6.654 7 C_DC11:DG19_D C 11 ? D 19 ? 19 1 1 B DA 12 1_555 C DT 18 1_555 -0.400 -0.041 0.591 6.533 -6.846 9.278 8 C_DA12:DT18_D C 12 ? D 18 ? 20 1 1 B DA 13 1_555 C DT 17 1_555 0.370 -0.059 -0.010 6.059 -6.628 5.578 9 C_DA13:DT17_D C 13 ? D 17 ? 20 1 1 B DC 14 1_555 C DG 16 1_555 0.358 0.073 -0.448 15.818 -11.350 -2.272 10 C_DC14:DG16_D C 14 ? D 16 ? 19 1 1 B DA 15 1_555 C DT 15 1_555 0.200 -0.274 -0.119 -7.809 -1.182 1.323 11 C_DA15:DT15_D C 15 ? D 15 ? 20 1 1 B DC 16 1_555 C DG 14 1_555 -0.311 -0.115 -0.274 5.071 -9.698 0.830 12 C_DC16:DG14_D C 16 ? D 14 ? 19 1 1 B DC 17 1_555 C DG 13 1_555 -0.332 -0.267 0.613 -13.416 -5.716 -2.881 13 C_DC17:DG13_D C 17 ? D 13 ? 19 1 1 B DC 18 1_555 C DG 12 1_555 -0.368 -0.280 -0.220 4.476 1.842 -0.657 14 C_DC18:DG12_D C 18 ? D 12 ? 19 1 1 B DA 19 1_555 C DT 11 1_555 -0.333 -0.402 0.010 -1.218 -20.860 -1.072 15 C_DA19:DT11_D C 19 ? D 11 ? 20 1 1 B DC 20 1_555 C DG 10 1_555 0.119 -0.323 -0.078 -7.034 9.838 -5.693 16 C_DC20:DG10_D C 20 ? D 10 ? 19 1 1 B DA 21 1_555 C DT 9 1_555 -0.303 -0.189 -0.205 0.727 0.795 3.587 17 C_DA21:DT9_D C 21 ? D 9 ? 20 1 1 B DC 22 1_555 C DG 8 1_555 0.161 -0.107 -0.383 6.562 -7.068 1.511 18 C_DC22:DG8_D C 22 ? D 8 ? 19 1 1 B DA 23 1_555 C DT 7 1_555 -0.374 -0.417 0.079 -11.500 -4.712 2.680 19 C_DA23:DT7_D C 23 ? D 7 ? 20 1 1 B DC 24 1_555 C DG 6 1_555 0.417 -0.032 0.241 0.012 -2.482 4.183 20 C_DC24:DG6_D C 24 ? D 6 ? 19 1 1 B DC 25 1_555 C DG 5 1_555 1.062 -0.365 0.235 -8.106 -2.594 2.418 21 C_DC25:DG5_D C 25 ? D 5 ? 19 1 1 B DA 26 1_555 C DT 4 1_555 -0.484 0.029 0.023 8.164 -10.554 2.871 22 C_DA26:DT4_D C 26 ? D 4 ? 20 1 1 B DG 27 1_555 C DC 3 1_555 0.263 0.211 0.459 8.283 -19.341 2.731 23 C_DG27:DC3_D C 27 ? D 3 ? 19 1 1 B DG 28 1_555 C DC 2 1_555 -0.196 -0.327 0.100 -0.515 -12.535 -1.933 24 C_DG28:DC2_D C 28 ? D 2 ? 19 1 1 B DT 29 1_555 C DA 1 1_555 -0.546 -0.118 0.062 -0.608 -24.402 6.031 25 C_DT29:DA1_D C 29 ? D 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 7 1_555 C DG 23 1_555 B DA 8 1_555 C DT 22 1_555 0.174 -0.396 3.195 -4.061 -1.196 30.962 -0.513 -1.075 3.159 -2.227 7.563 31.243 1 CC_DC7DA8:DT22DG23_DD C 7 ? D 23 ? C 8 ? D 22 ? 1 B DA 8 1_555 C DT 22 1_555 B DC 9 1_555 C DG 21 1_555 -0.057 0.704 3.336 5.654 -0.091 22.483 1.784 2.136 3.221 -0.230 -14.215 23.174 2 CC_DA8DC9:DG21DT22_DD C 8 ? D 22 ? C 9 ? D 21 ? 1 B DC 9 1_555 C DG 21 1_555 B DA 10 1_555 C DT 20 1_555 0.387 2.371 3.141 0.980 -8.301 55.339 2.964 -0.361 2.794 -8.881 -1.049 55.917 3 CC_DC9DA10:DT20DG21_DD C 9 ? D 21 ? C 10 ? D 20 ? 1 B DA 10 1_555 C DT 20 1_555 B DC 11 1_555 C DG 19 1_555 0.357 0.001 3.667 0.802 -0.496 31.036 0.108 -0.494 3.674 -0.927 -1.498 31.050 4 CC_DA10DC11:DG19DT20_DD C 10 ? D 20 ? C 11 ? D 19 ? 1 B DC 11 1_555 C DG 19 1_555 B DA 12 1_555 C DT 18 1_555 1.023 0.889 3.245 -3.060 -3.532 47.223 1.383 -1.513 3.106 -4.396 3.809 47.440 5 CC_DC11DA12:DT18DG19_DD C 11 ? D 19 ? C 12 ? D 18 ? 1 B DA 12 1_555 C DT 18 1_555 B DA 13 1_555 C DT 17 1_555 -0.511 -0.110 3.412 3.039 -3.269 37.444 0.268 1.200 3.359 -5.069 -4.713 37.700 6 CC_DA12DA13:DT17DT18_DD C 12 ? D 18 ? C 13 ? D 17 ? 1 B DA 13 1_555 C DT 17 1_555 B DC 14 1_555 C DG 16 1_555 0.074 -0.372 3.040 1.339 0.499 30.634 -0.794 0.105 3.034 0.944 -2.533 30.667 7 CC_DA13DC14:DG16DT17_DD C 13 ? D 17 ? C 14 ? D 16 ? 1 B DC 14 1_555 C DG 16 1_555 B DA 15 1_555 C DT 15 1_555 0.134 -0.815 3.953 -4.322 -0.116 41.928 -1.119 -0.724 3.923 -0.162 6.021 42.140 8 CC_DC14DA15:DT15DG16_DD C 14 ? D 16 ? C 15 ? D 15 ? 1 B DA 15 1_555 C DT 15 1_555 B DC 16 1_555 C DG 14 1_555 0.324 -1.233 3.239 0.743 -6.374 27.207 -0.986 -0.487 3.440 -13.315 -1.552 27.939 9 CC_DA15DC16:DG14DT15_DD C 15 ? D 15 ? C 16 ? D 14 ? 1 B DC 16 1_555 C DG 14 1_555 B DC 17 1_555 C DG 13 1_555 -1.027 -1.633 3.682 -9.605 6.790 27.462 -4.760 -0.251 3.355 13.542 19.158 29.830 10 CC_DC16DC17:DG13DG14_DD C 16 ? D 14 ? C 17 ? D 13 ? 1 B DC 17 1_555 C DG 13 1_555 B DC 18 1_555 C DG 12 1_555 -0.672 -0.089 2.904 5.963 4.205 22.760 -1.394 3.296 2.588 10.319 -14.636 23.886 11 CC_DC17DC18:DG12DG13_DD C 17 ? D 13 ? C 18 ? D 12 ? 1 B DC 18 1_555 C DG 12 1_555 B DA 19 1_555 C DT 11 1_555 -0.588 1.296 3.500 -3.073 4.250 39.147 1.368 0.474 3.649 6.308 4.561 39.483 12 CC_DC18DA19:DT11DG12_DD C 18 ? D 12 ? C 19 ? D 11 ? 1 B DA 19 1_555 C DT 11 1_555 B DC 20 1_555 C DG 10 1_555 0.666 0.191 3.546 -1.522 -2.565 40.975 0.573 -1.127 3.503 -3.658 2.170 41.079 13 CC_DA19DC20:DG10DT11_DD C 19 ? D 11 ? C 20 ? D 10 ? 1 B DC 20 1_555 C DG 10 1_555 B DA 21 1_555 C DT 9 1_555 -0.529 1.366 3.321 -0.871 -1.482 39.397 2.201 0.680 3.280 -2.198 1.292 39.433 14 CC_DC20DA21:DT9DG10_DD C 20 ? D 10 ? C 21 ? D 9 ? 1 B DA 21 1_555 C DT 9 1_555 B DC 22 1_555 C DG 8 1_555 0.189 -0.506 3.096 1.020 3.671 25.425 -2.104 -0.156 3.000 8.281 -2.301 25.705 15 CC_DA21DC22:DG8DT9_DD C 21 ? D 9 ? C 22 ? D 8 ? 1 B DC 22 1_555 C DG 8 1_555 B DA 23 1_555 C DT 7 1_555 1.517 -0.882 3.732 -0.264 1.491 36.701 -1.631 -2.448 3.684 2.367 0.419 36.732 16 CC_DC22DA23:DT7DG8_DD C 22 ? D 8 ? C 23 ? D 7 ? 1 B DA 23 1_555 C DT 7 1_555 B DC 24 1_555 C DG 6 1_555 -0.306 -0.634 3.223 3.957 2.657 29.559 -1.761 1.386 3.089 5.165 -7.693 29.932 17 CC_DA23DC24:DG6DT7_DD C 23 ? D 7 ? C 24 ? D 6 ? 1 B DC 24 1_555 C DG 6 1_555 B DC 25 1_555 C DG 5 1_555 0.071 -0.385 3.515 3.751 2.118 39.912 -0.820 0.355 3.483 3.092 -5.476 40.135 18 CC_DC24DC25:DG5DG6_DD C 24 ? D 6 ? C 25 ? D 5 ? 1 B DC 25 1_555 C DG 5 1_555 B DA 26 1_555 C DT 4 1_555 -0.141 0.798 2.946 3.582 -0.099 34.310 1.359 0.737 2.915 -0.167 -6.052 34.492 19 CC_DC25DA26:DT4DG5_DD C 25 ? D 5 ? C 26 ? D 4 ? 1 B DA 26 1_555 C DT 4 1_555 B DG 27 1_555 C DC 3 1_555 -0.499 0.300 3.334 -2.775 1.736 33.076 0.226 0.396 3.374 3.040 4.859 33.233 20 CC_DA26DG27:DC3DT4_DD C 26 ? D 4 ? C 27 ? D 3 ? 1 B DG 27 1_555 C DC 3 1_555 B DG 28 1_555 C DC 2 1_555 0.208 0.491 3.587 2.859 -0.372 36.933 0.828 0.093 3.588 -0.585 -4.504 37.041 21 CC_DG27DG28:DC2DC3_DD C 27 ? D 3 ? C 28 ? D 2 ? 1 B DG 28 1_555 C DC 2 1_555 B DT 29 1_555 C DA 1 1_555 0.556 -0.182 3.296 3.291 7.705 27.660 -2.098 -0.374 3.175 15.667 -6.691 28.877 22 CC_DG28DT29:DA1DC2_DD C 28 ? D 2 ? C 29 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1IGN _pdbx_initial_refinement_model.details 'PDB ENTRY 1IGN' #