HEADER OXIDOREDUCTASE 10-NOV-11 3UL3 TITLE STRUCTURAL INSIGHTS INTO THIOREDOXIN-2: A COMPONENT OF MALARIA TITLE 2 PARASITE PROTEIN SECRETION MACHINERY COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 29-156; COMPND 5 SYNONYM: THIOREDOXIN-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: MAL13P1.225, TRX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LEMO21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS THIOREDOXIN, PTEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHARMA,A.SHARMA,S.DIXIT,A.SHARMA REVDAT 4 20-MAR-24 3UL3 1 REMARK REVDAT 3 25-DEC-19 3UL3 1 JRNL REVDAT 2 08-NOV-17 3UL3 1 REMARK REVDAT 1 14-DEC-11 3UL3 0 JRNL AUTH A.SHARMA,A.SHARMA,S.DIXIT,A.SHARMA JRNL TITL STRUCTURAL INSIGHTS INTO THIOREDOXIN-2: A COMPONENT OF JRNL TITL 2 MALARIA PARASITE PROTEIN SECRETION MACHINERY. JRNL REF SCI REP V. 1 179 2011 JRNL REFN ESSN 2045-2322 JRNL PMID 22355694 JRNL DOI 10.1038/SREP00179 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 8635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2592 - 5.2754 0.96 1391 160 0.2503 0.2860 REMARK 3 2 5.2754 - 4.1888 0.98 1317 152 0.2038 0.2440 REMARK 3 3 4.1888 - 3.6597 0.97 1346 144 0.2352 0.2930 REMARK 3 4 3.6597 - 3.3253 0.96 1292 141 0.3078 0.3585 REMARK 3 5 3.3253 - 3.0871 0.93 1243 143 0.3390 0.3764 REMARK 3 6 3.0871 - 2.9051 0.88 1175 131 0.3675 0.3640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.50 REMARK 3 SHRINKAGE RADIUS : 0.16 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 110.7 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.800 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39820 REMARK 3 B22 (A**2) : 0.39820 REMARK 3 B33 (A**2) : -0.79640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.025 1624 REMARK 3 ANGLE : 1.688 2173 REMARK 3 CHIRALITY : 0.121 246 REMARK 3 PLANARITY : 0.007 266 REMARK 3 DIHEDRAL : 23.275 609 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 54:58) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7912 1.6050 -3.2648 REMARK 3 T TENSOR REMARK 3 T11: 1.4824 T22: 1.7136 REMARK 3 T33: 1.5847 T12: -0.2964 REMARK 3 T13: -0.9593 T23: -0.8304 REMARK 3 L TENSOR REMARK 3 L11: 6.7035 L22: 5.5050 REMARK 3 L33: 4.0334 L12: 4.7742 REMARK 3 L13: -4.5256 L23: -4.4215 REMARK 3 S TENSOR REMARK 3 S11: 0.1057 S12: 0.0594 S13: -0.4221 REMARK 3 S21: -0.1729 S22: 0.0670 S23: 0.4264 REMARK 3 S31: 0.5199 S32: -0.7989 S33: 0.6659 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 59:71) REMARK 3 ORIGIN FOR THE GROUP (A): -37.6128 -9.4057 -4.0906 REMARK 3 T TENSOR REMARK 3 T11: 1.0151 T22: 0.5401 REMARK 3 T33: 0.4046 T12: 0.2186 REMARK 3 T13: -0.2400 T23: -0.0869 REMARK 3 L TENSOR REMARK 3 L11: 9.9651 L22: 1.8336 REMARK 3 L33: 1.5445 L12: 4.2438 REMARK 3 L13: -3.8920 L23: -1.6859 REMARK 3 S TENSOR REMARK 3 S11: -0.4098 S12: -1.5840 S13: 1.4922 REMARK 3 S21: 1.1977 S22: 0.1393 S23: -0.0056 REMARK 3 S31: -1.8563 S32: -0.2206 S33: 0.4351 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 72:82) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7017 -25.0226 -5.5665 REMARK 3 T TENSOR REMARK 3 T11: 0.6675 T22: 0.7446 REMARK 3 T33: 0.2428 T12: 0.1941 REMARK 3 T13: -0.3608 T23: 0.0603 REMARK 3 L TENSOR REMARK 3 L11: 0.0205 L22: 4.8839 REMARK 3 L33: 5.6843 L12: 0.0184 REMARK 3 L13: 0.4395 L23: -2.3942 REMARK 3 S TENSOR REMARK 3 S11: -0.0699 S12: 1.4465 S13: 0.3630 REMARK 3 S21: -0.5876 S22: -1.2250 S23: -0.9218 REMARK 3 S31: 0.9716 S32: 1.6643 S33: -0.2741 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 83:112) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5143 -25.5386 -11.2663 REMARK 3 T TENSOR REMARK 3 T11: 0.8337 T22: 0.5988 REMARK 3 T33: 0.5678 T12: 0.0859 REMARK 3 T13: -0.1409 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 5.8451 L22: 6.5934 REMARK 3 L33: 5.7983 L12: -1.5144 REMARK 3 L13: 3.7105 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.0703 S12: 1.0301 S13: -0.0351 REMARK 3 S21: -1.0253 S22: -0.1223 S23: 0.1082 REMARK 3 S31: 0.3991 S32: 0.4630 S33: -0.0211 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 113:132) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8437 -22.8972 2.2458 REMARK 3 T TENSOR REMARK 3 T11: 0.6052 T22: 0.9765 REMARK 3 T33: 0.5663 T12: 0.1153 REMARK 3 T13: -0.1677 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 6.8752 L22: 8.2059 REMARK 3 L33: 2.0975 L12: -1.8375 REMARK 3 L13: 2.8778 L23: -0.7157 REMARK 3 S TENSOR REMARK 3 S11: -1.0964 S12: -1.1766 S13: -0.1323 REMARK 3 S21: 1.0953 S22: 0.7289 S23: 0.2533 REMARK 3 S31: -0.7135 S32: 0.4134 S33: 0.1741 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 133:145) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8282 -27.2217 -0.5685 REMARK 3 T TENSOR REMARK 3 T11: 0.9505 T22: 0.7352 REMARK 3 T33: 0.6710 T12: 0.4025 REMARK 3 T13: -0.0226 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 1.8747 L22: 5.4878 REMARK 3 L33: 2.3589 L12: 0.9629 REMARK 3 L13: 0.9824 L23: -1.4258 REMARK 3 S TENSOR REMARK 3 S11: -0.7633 S12: -0.7901 S13: -0.1215 REMARK 3 S21: 0.1678 S22: 0.9773 S23: 1.4500 REMARK 3 S31: 0.3947 S32: 0.0952 S33: -0.0028 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 146:156) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4048 -30.1204 -7.8448 REMARK 3 T TENSOR REMARK 3 T11: 0.7917 T22: 1.0075 REMARK 3 T33: 1.2468 T12: -0.0349 REMARK 3 T13: -0.3119 T23: -0.4072 REMARK 3 L TENSOR REMARK 3 L11: 7.8822 L22: 1.7995 REMARK 3 L33: 7.6834 L12: 0.9234 REMARK 3 L13: -1.7223 L23: -3.7296 REMARK 3 S TENSOR REMARK 3 S11: -0.5112 S12: -0.5692 S13: -0.0685 REMARK 3 S21: -1.0146 S22: -0.9529 S23: 2.2456 REMARK 3 S31: 0.6297 S32: -1.5877 S33: 0.4806 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 54:63) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0747 -10.9930 3.2196 REMARK 3 T TENSOR REMARK 3 T11: 1.3603 T22: 1.0525 REMARK 3 T33: 0.4764 T12: -0.1402 REMARK 3 T13: -0.3800 T23: -0.1570 REMARK 3 L TENSOR REMARK 3 L11: 9.2925 L22: 8.3642 REMARK 3 L33: 2.0351 L12: 3.9345 REMARK 3 L13: -1.9449 L23: -8.0756 REMARK 3 S TENSOR REMARK 3 S11: -1.6977 S12: 0.1123 S13: 2.3092 REMARK 3 S21: -1.2025 S22: -0.5413 S23: 0.0906 REMARK 3 S31: -2.4291 S32: 1.7156 S33: -2.1342 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 64:71) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1925 -10.1500 -4.3791 REMARK 3 T TENSOR REMARK 3 T11: 1.1799 T22: 0.5002 REMARK 3 T33: 0.6432 T12: 0.2723 REMARK 3 T13: -0.5661 T23: -0.1242 REMARK 3 L TENSOR REMARK 3 L11: 2.9862 L22: 4.2104 REMARK 3 L33: 6.8610 L12: 1.2329 REMARK 3 L13: 4.3472 L23: 0.3749 REMARK 3 S TENSOR REMARK 3 S11: -0.6696 S12: -0.0475 S13: 0.7984 REMARK 3 S21: 0.3808 S22: -0.8811 S23: -0.0014 REMARK 3 S31: -1.8769 S32: -1.6423 S33: -2.4740 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 72:99) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4691 -9.1203 -23.0729 REMARK 3 T TENSOR REMARK 3 T11: 0.8428 T22: 0.5643 REMARK 3 T33: 0.8644 T12: 0.1271 REMARK 3 T13: 0.0383 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 3.6291 L22: 2.5387 REMARK 3 L33: 6.9991 L12: -0.6283 REMARK 3 L13: 3.9442 L23: -0.3769 REMARK 3 S TENSOR REMARK 3 S11: -0.2110 S12: 0.5626 S13: -0.2572 REMARK 3 S21: -0.2592 S22: -0.1979 S23: -0.4742 REMARK 3 S31: 0.6056 S32: 0.7651 S33: 0.3247 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 100:112) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1361 -9.9248 -15.0765 REMARK 3 T TENSOR REMARK 3 T11: 0.7835 T22: 0.6764 REMARK 3 T33: 0.6650 T12: 0.1237 REMARK 3 T13: 0.1372 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 8.0151 L22: 7.0669 REMARK 3 L33: 5.4798 L12: -4.4911 REMARK 3 L13: 3.9569 L23: -0.7530 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: -0.3339 S13: -1.1605 REMARK 3 S21: -0.7107 S22: 0.2665 S23: -0.7997 REMARK 3 S31: 0.2744 S32: 0.4635 S33: -0.0430 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 113:132) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2825 0.9877 -14.2062 REMARK 3 T TENSOR REMARK 3 T11: 0.8343 T22: 0.6080 REMARK 3 T33: 0.5867 T12: 0.0808 REMARK 3 T13: -0.0978 T23: -0.1519 REMARK 3 L TENSOR REMARK 3 L11: 4.3399 L22: 5.4148 REMARK 3 L33: 8.5799 L12: 0.0777 REMARK 3 L13: 0.1698 L23: -0.0201 REMARK 3 S TENSOR REMARK 3 S11: -0.5856 S12: -0.7511 S13: 0.9870 REMARK 3 S21: 0.8942 S22: 0.1106 S23: 0.3746 REMARK 3 S31: -1.7243 S32: -0.8038 S33: 0.4733 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 133:145) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1953 0.2829 -17.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.8231 T22: 0.6449 REMARK 3 T33: 0.7826 T12: 0.0284 REMARK 3 T13: -0.2726 T23: 0.0959 REMARK 3 L TENSOR REMARK 3 L11: 7.4858 L22: 3.6764 REMARK 3 L33: 6.2608 L12: -0.0717 REMARK 3 L13: -1.7640 L23: -2.2088 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: -1.1939 S13: -0.4999 REMARK 3 S21: 1.9250 S22: 0.0385 S23: -0.9529 REMARK 3 S31: 0.0927 S32: 2.0206 S33: -0.0464 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 146:156) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7287 -5.1893 -22.4794 REMARK 3 T TENSOR REMARK 3 T11: 0.6111 T22: 1.3466 REMARK 3 T33: 1.3017 T12: 0.0898 REMARK 3 T13: 0.0295 T23: 0.0807 REMARK 3 L TENSOR REMARK 3 L11: 5.8755 L22: 7.9157 REMARK 3 L33: 5.0091 L12: 0.8457 REMARK 3 L13: -0.4246 L23: -1.4106 REMARK 3 S TENSOR REMARK 3 S11: 0.6989 S12: 0.3241 S13: 0.0577 REMARK 3 S21: -0.2548 S22: -0.1999 S23: -1.8834 REMARK 3 S31: 0.5463 S32: 2.8379 S33: -0.5733 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.125M BIS-TRIS PH 5.5, 2.2M AMMONIUM REMARK 280 SULFATE, 5MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.60267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.30133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.30133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.60267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 29 REMARK 465 THR B 30 REMARK 465 ASN B 31 REMARK 465 ASP B 32 REMARK 465 ASP B 33 REMARK 465 PRO B 34 REMARK 465 LEU B 35 REMARK 465 THR B 36 REMARK 465 PRO B 37 REMARK 465 LEU B 38 REMARK 465 ASN B 39 REMARK 465 ARG B 40 REMARK 465 PHE B 41 REMARK 465 ASP B 42 REMARK 465 LYS B 43 REMARK 465 TYR B 44 REMARK 465 TYR B 45 REMARK 465 LEU B 46 REMARK 465 ARG B 47 REMARK 465 MET B 48 REMARK 465 PHE B 49 REMARK 465 LYS B 50 REMARK 465 LYS B 51 REMARK 465 VAL B 52 REMARK 465 PRO B 53 REMARK 465 SER A 29 REMARK 465 THR A 30 REMARK 465 ASN A 31 REMARK 465 ASP A 32 REMARK 465 ASP A 33 REMARK 465 PRO A 34 REMARK 465 LEU A 35 REMARK 465 THR A 36 REMARK 465 PRO A 37 REMARK 465 LEU A 38 REMARK 465 ASN A 39 REMARK 465 ARG A 40 REMARK 465 PHE A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 TYR A 44 REMARK 465 TYR A 45 REMARK 465 LEU A 46 REMARK 465 ARG A 47 REMARK 465 MET A 48 REMARK 465 PHE A 49 REMARK 465 LYS A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 PRO A 53 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 55 CB CG CD1 CD2 REMARK 470 GLN B 56 CG CD OE1 NE2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 ASN B 58 CG OD1 ND2 REMARK 470 ILE B 62 CB CG1 CG2 CD1 REMARK 470 ILE B 63 CG1 CG2 CD1 REMARK 470 ASN B 64 CG OD1 ND2 REMARK 470 ASN B 67 CB CG OD1 ND2 REMARK 470 MET B 68 CG SD CE REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 GLN A 56 CB CG CD OE1 NE2 REMARK 470 GLN A 57 CB CG CD OE1 NE2 REMARK 470 ASN A 58 CB CG OD1 ND2 REMARK 470 SER A 60 CB OG REMARK 470 ASN A 61 CB CG OD1 ND2 REMARK 470 ILE A 62 CB CG1 CG2 CD1 REMARK 470 ILE A 63 CB CG1 CG2 CD1 REMARK 470 VAL A 66 CB CG1 CG2 REMARK 470 ASN A 67 CB CG OD1 ND2 REMARK 470 MET A 68 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 104 OH TYR A 104 1.54 REMARK 500 O ALA A 117 CG2 VAL A 122 1.97 REMARK 500 O HOH A 3 O HOH A 7 1.98 REMARK 500 OG SER A 145 OD1 ASP A 148 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 83 OD1 ASP A 111 6444 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 82 CB CYS B 82 SG -0.114 REMARK 500 CYS B 85 CB CYS B 85 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 67 9.59 86.66 REMARK 500 MET B 68 -86.30 -118.61 REMARK 500 ASN A 61 -87.32 159.06 REMARK 500 VAL A 66 -124.97 47.99 REMARK 500 ASN A 67 157.80 110.13 REMARK 500 LYS A 134 2.98 81.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 3UL3 B 29 156 UNP Q8IDP4 Q8IDP4_PLAF7 29 156 DBREF 3UL3 A 29 156 UNP Q8IDP4 Q8IDP4_PLAF7 29 156 SEQRES 1 B 128 SER THR ASN ASP ASP PRO LEU THR PRO LEU ASN ARG PHE SEQRES 2 B 128 ASP LYS TYR TYR LEU ARG MET PHE LYS LYS VAL PRO ARG SEQRES 3 B 128 LEU GLN GLN ASN GLY SER ASN ILE ILE ASN GLY VAL ASN SEQRES 4 B 128 MET LYS ASN THR VAL ILE VAL LEU TYR PHE PHE ALA LYS SEQRES 5 B 128 TRP CYS GLN ALA CYS THR MET GLN SER THR GLU MET ASP SEQRES 6 B 128 LYS LEU GLN LYS TYR TYR GLY LYS ARG ILE TYR LEU LEU SEQRES 7 B 128 LYS VAL ASP LEU ASP LYS ASN GLU SER LEU ALA ARG LYS SEQRES 8 B 128 PHE SER VAL LYS SER LEU PRO THR ILE ILE LEU LEU LYS SEQRES 9 B 128 ASN LYS THR MET LEU ALA ARG LYS ASP HIS PHE VAL SER SEQRES 10 B 128 SER ASN ASP LEU ILE ALA LEU ILE LYS LYS HIS SEQRES 1 A 128 SER THR ASN ASP ASP PRO LEU THR PRO LEU ASN ARG PHE SEQRES 2 A 128 ASP LYS TYR TYR LEU ARG MET PHE LYS LYS VAL PRO ARG SEQRES 3 A 128 LEU GLN GLN ASN GLY SER ASN ILE ILE ASN GLY VAL ASN SEQRES 4 A 128 MET LYS ASN THR VAL ILE VAL LEU TYR PHE PHE ALA LYS SEQRES 5 A 128 TRP CYS GLN ALA CYS THR MET GLN SER THR GLU MET ASP SEQRES 6 A 128 LYS LEU GLN LYS TYR TYR GLY LYS ARG ILE TYR LEU LEU SEQRES 7 A 128 LYS VAL ASP LEU ASP LYS ASN GLU SER LEU ALA ARG LYS SEQRES 8 A 128 PHE SER VAL LYS SER LEU PRO THR ILE ILE LEU LEU LYS SEQRES 9 A 128 ASN LYS THR MET LEU ALA ARG LYS ASP HIS PHE VAL SER SEQRES 10 A 128 SER ASN ASP LEU ILE ALA LEU ILE LYS LYS HIS FORMUL 3 HOH *30(H2 O) HELIX 1 1 CYS B 82 GLY B 100 1 19 HELIX 2 2 ASN B 113 PHE B 120 1 8 HELIX 3 3 SER B 145 LYS B 154 1 10 HELIX 4 4 CYS A 82 GLY A 100 1 19 HELIX 5 5 ASN A 113 PHE A 120 1 8 HELIX 6 6 SER A 145 HIS A 156 1 12 SHEET 1 A 4 ILE B 103 ASP B 109 0 SHEET 2 A 4 VAL B 72 PHE B 78 1 N VAL B 74 O TYR B 104 SHEET 3 A 4 THR B 127 LYS B 132 -1 O THR B 127 N PHE B 77 SHEET 4 A 4 THR B 135 LYS B 140 -1 O LEU B 137 N LEU B 130 SHEET 1 B 4 ILE A 103 ASP A 109 0 SHEET 2 B 4 VAL A 72 PHE A 78 1 N VAL A 74 O TYR A 104 SHEET 3 B 4 THR A 127 LYS A 132 -1 O ILE A 129 N LEU A 75 SHEET 4 B 4 THR A 135 LYS A 140 -1 O LYS A 140 N ILE A 128 CISPEP 1 LEU B 125 PRO B 126 0 -3.13 CISPEP 2 VAL A 66 ASN A 67 0 0.77 CISPEP 3 MET A 68 LYS A 69 0 3.50 CISPEP 4 LEU A 125 PRO A 126 0 -2.27 CRYST1 87.046 87.046 90.904 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011488 0.006633 0.000000 0.00000 SCALE2 0.000000 0.013265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011001 0.00000