data_3ULJ # _entry.id 3ULJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3ULJ pdb_00003ulj 10.2210/pdb3ulj/pdb RCSB RCSB068905 ? ? WWPDB D_1000068905 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-15 2 'Structure model' 1 1 2012-10-24 3 'Structure model' 1 2 2024-02-28 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3ULJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-11-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mayr, F.' 1 'Schuetz, A.' 2 'Doege, N.' 3 'Heinemann, U.' 4 # _citation.id primary _citation.title 'The Lin28 cold-shock domain remodels pre-let-7 microRNA.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 7492 _citation.page_last 7506 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22570413 _citation.pdbx_database_id_DOI 10.1093/nar/gks355 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mayr, F.' 1 ? primary 'Schutz, A.' 2 ? primary 'Doge, N.' 3 ? primary 'Heinemann, U.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lin28b, DNA-binding protein' 9942.231 2 ? ? 'unp residues 27-114' ? 2 non-polymer syn 'ACETATE ION' 59.044 8 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 272 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSDPQVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTG PGGNPCLGNE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSDPQVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTG PGGNPCLGNE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 PRO n 1 5 GLN n 1 6 VAL n 1 7 LEU n 1 8 ARG n 1 9 GLY n 1 10 SER n 1 11 GLY n 1 12 HIS n 1 13 CYS n 1 14 LYS n 1 15 TRP n 1 16 PHE n 1 17 ASN n 1 18 VAL n 1 19 ARG n 1 20 MET n 1 21 GLY n 1 22 PHE n 1 23 GLY n 1 24 PHE n 1 25 ILE n 1 26 SER n 1 27 MET n 1 28 THR n 1 29 SER n 1 30 ARG n 1 31 GLU n 1 32 GLY n 1 33 SER n 1 34 PRO n 1 35 LEU n 1 36 GLU n 1 37 ASN n 1 38 PRO n 1 39 VAL n 1 40 ASP n 1 41 VAL n 1 42 PHE n 1 43 VAL n 1 44 HIS n 1 45 GLN n 1 46 SER n 1 47 LYS n 1 48 LEU n 1 49 TYR n 1 50 MET n 1 51 GLU n 1 52 GLY n 1 53 PHE n 1 54 ARG n 1 55 SER n 1 56 LEU n 1 57 LYS n 1 58 GLU n 1 59 GLY n 1 60 GLU n 1 61 PRO n 1 62 VAL n 1 63 GLU n 1 64 PHE n 1 65 THR n 1 66 PHE n 1 67 LYS n 1 68 LYS n 1 69 SER n 1 70 SER n 1 71 LYS n 1 72 GLY n 1 73 PHE n 1 74 GLU n 1 75 SER n 1 76 LEU n 1 77 ARG n 1 78 VAL n 1 79 THR n 1 80 GLY n 1 81 PRO n 1 82 GLY n 1 83 GLY n 1 84 ASN n 1 85 PRO n 1 86 CYS n 1 87 LEU n 1 88 GLY n 1 89 ASN n 1 90 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Western clawed frog' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lin28b _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xenopus (Silurana) tropicalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 8364 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQLinkH _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 25 ? ? ? A . n A 1 2 SER 2 26 ? ? ? A . n A 1 3 ASP 3 27 ? ? ? A . n A 1 4 PRO 4 28 28 PRO PRO A . n A 1 5 GLN 5 29 29 GLN GLN A . n A 1 6 VAL 6 30 30 VAL VAL A . n A 1 7 LEU 7 31 31 LEU LEU A . n A 1 8 ARG 8 32 32 ARG ARG A . n A 1 9 GLY 9 33 33 GLY GLY A . n A 1 10 SER 10 34 34 SER SER A . n A 1 11 GLY 11 35 35 GLY GLY A . n A 1 12 HIS 12 36 36 HIS HIS A . n A 1 13 CYS 13 37 37 CYS CYS A . n A 1 14 LYS 14 38 38 LYS LYS A . n A 1 15 TRP 15 39 39 TRP TRP A . n A 1 16 PHE 16 40 40 PHE PHE A . n A 1 17 ASN 17 41 41 ASN ASN A . n A 1 18 VAL 18 42 42 VAL VAL A . n A 1 19 ARG 19 43 43 ARG ARG A . n A 1 20 MET 20 44 44 MET MET A . n A 1 21 GLY 21 45 45 GLY GLY A . n A 1 22 PHE 22 46 46 PHE PHE A . n A 1 23 GLY 23 47 47 GLY GLY A . n A 1 24 PHE 24 48 48 PHE PHE A . n A 1 25 ILE 25 49 49 ILE ILE A . n A 1 26 SER 26 50 50 SER SER A . n A 1 27 MET 27 51 51 MET MET A . n A 1 28 THR 28 52 52 THR THR A . n A 1 29 SER 29 53 53 SER SER A . n A 1 30 ARG 30 54 54 ARG ARG A . n A 1 31 GLU 31 55 55 GLU GLU A . n A 1 32 GLY 32 56 56 GLY GLY A . n A 1 33 SER 33 57 57 SER SER A . n A 1 34 PRO 34 58 58 PRO PRO A . n A 1 35 LEU 35 59 59 LEU LEU A . n A 1 36 GLU 36 60 60 GLU GLU A . n A 1 37 ASN 37 61 61 ASN ASN A . n A 1 38 PRO 38 62 62 PRO PRO A . n A 1 39 VAL 39 63 63 VAL VAL A . n A 1 40 ASP 40 64 64 ASP ASP A . n A 1 41 VAL 41 65 65 VAL VAL A . n A 1 42 PHE 42 66 66 PHE PHE A . n A 1 43 VAL 43 67 67 VAL VAL A . n A 1 44 HIS 44 68 68 HIS HIS A . n A 1 45 GLN 45 69 69 GLN GLN A . n A 1 46 SER 46 70 70 SER SER A . n A 1 47 LYS 47 71 71 LYS LYS A . n A 1 48 LEU 48 72 72 LEU LEU A . n A 1 49 TYR 49 73 73 TYR TYR A . n A 1 50 MET 50 74 74 MET MET A . n A 1 51 GLU 51 75 75 GLU GLU A . n A 1 52 GLY 52 76 76 GLY GLY A . n A 1 53 PHE 53 77 77 PHE PHE A . n A 1 54 ARG 54 78 78 ARG ARG A . n A 1 55 SER 55 79 79 SER SER A . n A 1 56 LEU 56 80 80 LEU LEU A . n A 1 57 LYS 57 81 81 LYS LYS A . n A 1 58 GLU 58 82 82 GLU GLU A . n A 1 59 GLY 59 83 83 GLY GLY A . n A 1 60 GLU 60 84 84 GLU GLU A . n A 1 61 PRO 61 85 85 PRO PRO A . n A 1 62 VAL 62 86 86 VAL VAL A . n A 1 63 GLU 63 87 87 GLU GLU A . n A 1 64 PHE 64 88 88 PHE PHE A . n A 1 65 THR 65 89 89 THR THR A . n A 1 66 PHE 66 90 90 PHE PHE A . n A 1 67 LYS 67 91 91 LYS LYS A . n A 1 68 LYS 68 92 92 LYS LYS A . n A 1 69 SER 69 93 93 SER SER A . n A 1 70 SER 70 94 94 SER SER A . n A 1 71 LYS 71 95 95 LYS LYS A . n A 1 72 GLY 72 96 96 GLY GLY A . n A 1 73 PHE 73 97 97 PHE PHE A . n A 1 74 GLU 74 98 98 GLU GLU A . n A 1 75 SER 75 99 99 SER SER A . n A 1 76 LEU 76 100 100 LEU LEU A . n A 1 77 ARG 77 101 101 ARG ARG A . n A 1 78 VAL 78 102 102 VAL VAL A . n A 1 79 THR 79 103 103 THR THR A . n A 1 80 GLY 80 104 104 GLY GLY A . n A 1 81 PRO 81 105 105 PRO PRO A . n A 1 82 GLY 82 106 106 GLY GLY A . n A 1 83 GLY 83 107 107 GLY GLY A . n A 1 84 ASN 84 108 108 ASN ASN A . n A 1 85 PRO 85 109 109 PRO PRO A . n A 1 86 CYS 86 110 110 CYS CYS A . n A 1 87 LEU 87 111 111 LEU LEU A . n A 1 88 GLY 88 112 112 GLY GLY A . n A 1 89 ASN 89 113 113 ASN ASN A . n A 1 90 GLU 90 114 114 GLU GLU A . n B 1 1 GLY 1 25 25 GLY GLY B . n B 1 2 SER 2 26 26 SER SER B . n B 1 3 ASP 3 27 27 ASP ASP B . n B 1 4 PRO 4 28 28 PRO PRO B . n B 1 5 GLN 5 29 29 GLN GLN B . n B 1 6 VAL 6 30 30 VAL VAL B . n B 1 7 LEU 7 31 31 LEU LEU B . n B 1 8 ARG 8 32 32 ARG ARG B . n B 1 9 GLY 9 33 33 GLY GLY B . n B 1 10 SER 10 34 34 SER SER B . n B 1 11 GLY 11 35 35 GLY GLY B . n B 1 12 HIS 12 36 36 HIS HIS B . n B 1 13 CYS 13 37 37 CYS CYS B . n B 1 14 LYS 14 38 38 LYS LYS B . n B 1 15 TRP 15 39 39 TRP TRP B . n B 1 16 PHE 16 40 40 PHE PHE B . n B 1 17 ASN 17 41 41 ASN ASN B . n B 1 18 VAL 18 42 42 VAL VAL B . n B 1 19 ARG 19 43 43 ARG ARG B . n B 1 20 MET 20 44 44 MET MET B . n B 1 21 GLY 21 45 45 GLY GLY B . n B 1 22 PHE 22 46 46 PHE PHE B . n B 1 23 GLY 23 47 47 GLY GLY B . n B 1 24 PHE 24 48 48 PHE PHE B . n B 1 25 ILE 25 49 49 ILE ILE B . n B 1 26 SER 26 50 50 SER SER B . n B 1 27 MET 27 51 51 MET MET B . n B 1 28 THR 28 52 52 THR THR B . n B 1 29 SER 29 53 53 SER SER B . n B 1 30 ARG 30 54 54 ARG ARG B . n B 1 31 GLU 31 55 55 GLU GLU B . n B 1 32 GLY 32 56 56 GLY GLY B . n B 1 33 SER 33 57 57 SER SER B . n B 1 34 PRO 34 58 58 PRO PRO B . n B 1 35 LEU 35 59 59 LEU LEU B . n B 1 36 GLU 36 60 60 GLU GLU B . n B 1 37 ASN 37 61 61 ASN ASN B . n B 1 38 PRO 38 62 62 PRO PRO B . n B 1 39 VAL 39 63 63 VAL VAL B . n B 1 40 ASP 40 64 64 ASP ASP B . n B 1 41 VAL 41 65 65 VAL VAL B . n B 1 42 PHE 42 66 66 PHE PHE B . n B 1 43 VAL 43 67 67 VAL VAL B . n B 1 44 HIS 44 68 68 HIS HIS B . n B 1 45 GLN 45 69 69 GLN GLN B . n B 1 46 SER 46 70 70 SER SER B . n B 1 47 LYS 47 71 71 LYS LYS B . n B 1 48 LEU 48 72 72 LEU LEU B . n B 1 49 TYR 49 73 73 TYR TYR B . n B 1 50 MET 50 74 74 MET MET B . n B 1 51 GLU 51 75 75 GLU GLU B . n B 1 52 GLY 52 76 76 GLY GLY B . n B 1 53 PHE 53 77 77 PHE PHE B . n B 1 54 ARG 54 78 78 ARG ARG B . n B 1 55 SER 55 79 79 SER SER B . n B 1 56 LEU 56 80 80 LEU LEU B . n B 1 57 LYS 57 81 81 LYS LYS B . n B 1 58 GLU 58 82 82 GLU GLU B . n B 1 59 GLY 59 83 83 GLY GLY B . n B 1 60 GLU 60 84 84 GLU GLU B . n B 1 61 PRO 61 85 85 PRO PRO B . n B 1 62 VAL 62 86 86 VAL VAL B . n B 1 63 GLU 63 87 87 GLU GLU B . n B 1 64 PHE 64 88 88 PHE PHE B . n B 1 65 THR 65 89 89 THR THR B . n B 1 66 PHE 66 90 90 PHE PHE B . n B 1 67 LYS 67 91 91 LYS LYS B . n B 1 68 LYS 68 92 92 LYS LYS B . n B 1 69 SER 69 93 93 SER SER B . n B 1 70 SER 70 94 94 SER SER B . n B 1 71 LYS 71 95 95 LYS LYS B . n B 1 72 GLY 72 96 96 GLY GLY B . n B 1 73 PHE 73 97 97 PHE PHE B . n B 1 74 GLU 74 98 98 GLU GLU B . n B 1 75 SER 75 99 99 SER SER B . n B 1 76 LEU 76 100 100 LEU LEU B . n B 1 77 ARG 77 101 101 ARG ARG B . n B 1 78 VAL 78 102 102 VAL VAL B . n B 1 79 THR 79 103 103 THR THR B . n B 1 80 GLY 80 104 104 GLY GLY B . n B 1 81 PRO 81 105 105 PRO PRO B . n B 1 82 GLY 82 106 106 GLY GLY B . n B 1 83 GLY 83 107 107 GLY GLY B . n B 1 84 ASN 84 108 108 ASN ASN B . n B 1 85 PRO 85 109 109 PRO PRO B . n B 1 86 CYS 86 110 110 CYS CYS B . n B 1 87 LEU 87 111 111 LEU LEU B . n B 1 88 GLY 88 112 112 GLY GLY B . n B 1 89 ASN 89 113 113 ASN ASN B . n B 1 90 GLU 90 114 114 GLU GLU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT 1 3 3 ACT ACT A . D 2 ACT 1 4 4 ACT ACT A . E 2 ACT 1 5 5 ACT ACT A . F 2 ACT 1 6 6 ACT ACT A . G 2 ACT 1 8 8 ACT ACT A . H 3 GOL 1 2 2 GOL GOL A . I 2 ACT 1 9 9 ACT ACT A . J 2 ACT 1 1 1 ACT ACT B . K 2 ACT 1 7 7 ACT ACT B . L 4 HOH 1 1 1 HOH HOH A . L 4 HOH 2 7 7 HOH HOH A . L 4 HOH 3 22 22 HOH HOH A . L 4 HOH 4 23 23 HOH HOH A . L 4 HOH 5 24 24 HOH HOH A . L 4 HOH 6 115 2 HOH HOH A . L 4 HOH 7 116 116 HOH HOH A . L 4 HOH 8 117 117 HOH HOH A . L 4 HOH 9 118 3 HOH HOH A . L 4 HOH 10 119 4 HOH HOH A . L 4 HOH 11 120 120 HOH HOH A . L 4 HOH 12 121 5 HOH HOH A . L 4 HOH 13 122 8 HOH HOH A . L 4 HOH 14 123 123 HOH HOH A . L 4 HOH 15 124 32 HOH HOH A . L 4 HOH 16 125 125 HOH HOH A . L 4 HOH 17 126 126 HOH HOH A . L 4 HOH 18 127 127 HOH HOH A . L 4 HOH 19 128 34 HOH HOH A . L 4 HOH 20 129 129 HOH HOH A . L 4 HOH 21 130 130 HOH HOH A . L 4 HOH 22 131 35 HOH HOH A . L 4 HOH 23 132 36 HOH HOH A . L 4 HOH 24 133 38 HOH HOH A . L 4 HOH 25 134 134 HOH HOH A . L 4 HOH 26 135 40 HOH HOH A . L 4 HOH 27 136 41 HOH HOH A . L 4 HOH 28 137 43 HOH HOH A . L 4 HOH 29 138 44 HOH HOH A . L 4 HOH 30 139 139 HOH HOH A . L 4 HOH 31 140 140 HOH HOH A . L 4 HOH 32 141 141 HOH HOH A . L 4 HOH 33 142 45 HOH HOH A . L 4 HOH 34 143 47 HOH HOH A . L 4 HOH 35 144 144 HOH HOH A . L 4 HOH 36 145 48 HOH HOH A . L 4 HOH 37 146 49 HOH HOH A . L 4 HOH 38 147 50 HOH HOH A . L 4 HOH 39 148 148 HOH HOH A . L 4 HOH 40 149 149 HOH HOH A . L 4 HOH 41 150 52 HOH HOH A . L 4 HOH 42 151 55 HOH HOH A . L 4 HOH 43 152 152 HOH HOH A . L 4 HOH 44 153 153 HOH HOH A . L 4 HOH 45 154 56 HOH HOH A . L 4 HOH 46 155 57 HOH HOH A . L 4 HOH 47 156 62 HOH HOH A . L 4 HOH 48 157 63 HOH HOH A . L 4 HOH 49 158 158 HOH HOH A . L 4 HOH 50 159 64 HOH HOH A . L 4 HOH 51 160 66 HOH HOH A . L 4 HOH 52 161 69 HOH HOH A . L 4 HOH 53 162 70 HOH HOH A . L 4 HOH 54 163 72 HOH HOH A . L 4 HOH 55 164 73 HOH HOH A . L 4 HOH 56 165 74 HOH HOH A . L 4 HOH 57 166 79 HOH HOH A . L 4 HOH 58 167 82 HOH HOH A . L 4 HOH 59 168 168 HOH HOH A . L 4 HOH 60 169 83 HOH HOH A . L 4 HOH 61 170 170 HOH HOH A . L 4 HOH 62 171 87 HOH HOH A . L 4 HOH 63 172 90 HOH HOH A . L 4 HOH 64 173 91 HOH HOH A . L 4 HOH 65 174 94 HOH HOH A . L 4 HOH 66 175 96 HOH HOH A . L 4 HOH 67 176 97 HOH HOH A . L 4 HOH 68 177 99 HOH HOH A . L 4 HOH 69 178 100 HOH HOH A . L 4 HOH 70 179 179 HOH HOH A . L 4 HOH 71 180 101 HOH HOH A . L 4 HOH 72 181 181 HOH HOH A . L 4 HOH 73 182 103 HOH HOH A . L 4 HOH 74 183 183 HOH HOH A . L 4 HOH 75 184 184 HOH HOH A . L 4 HOH 76 185 107 HOH HOH A . L 4 HOH 77 186 186 HOH HOH A . L 4 HOH 78 187 187 HOH HOH A . L 4 HOH 79 188 188 HOH HOH A . L 4 HOH 80 189 108 HOH HOH A . L 4 HOH 81 190 110 HOH HOH A . L 4 HOH 82 191 191 HOH HOH A . L 4 HOH 83 192 192 HOH HOH A . L 4 HOH 84 193 111 HOH HOH A . L 4 HOH 85 194 194 HOH HOH A . L 4 HOH 86 195 195 HOH HOH A . L 4 HOH 87 196 196 HOH HOH A . L 4 HOH 88 197 197 HOH HOH A . L 4 HOH 89 198 112 HOH HOH A . L 4 HOH 90 199 114 HOH HOH A . L 4 HOH 91 200 26 HOH HOH A . L 4 HOH 92 201 27 HOH HOH A . L 4 HOH 93 203 203 HOH HOH A . L 4 HOH 94 205 205 HOH HOH A . L 4 HOH 95 206 206 HOH HOH A . L 4 HOH 96 207 207 HOH HOH A . L 4 HOH 97 219 219 HOH HOH A . L 4 HOH 98 222 222 HOH HOH A . L 4 HOH 99 225 225 HOH HOH A . L 4 HOH 100 227 227 HOH HOH A . L 4 HOH 101 228 228 HOH HOH A . L 4 HOH 102 229 229 HOH HOH A . L 4 HOH 103 233 233 HOH HOH A . L 4 HOH 104 234 234 HOH HOH A . L 4 HOH 105 235 235 HOH HOH A . L 4 HOH 106 236 236 HOH HOH A . L 4 HOH 107 239 239 HOH HOH A . L 4 HOH 108 240 240 HOH HOH A . L 4 HOH 109 241 241 HOH HOH A . L 4 HOH 110 244 244 HOH HOH A . L 4 HOH 111 249 249 HOH HOH A . L 4 HOH 112 251 251 HOH HOH A . L 4 HOH 113 260 260 HOH HOH A . L 4 HOH 114 261 261 HOH HOH A . L 4 HOH 115 262 262 HOH HOH A . L 4 HOH 116 263 263 HOH HOH A . L 4 HOH 117 265 265 HOH HOH A . L 4 HOH 118 270 270 HOH HOH A . L 4 HOH 119 271 271 HOH HOH A . L 4 HOH 120 276 276 HOH HOH A . L 4 HOH 121 277 277 HOH HOH A . M 4 HOH 1 6 6 HOH HOH B . M 4 HOH 2 9 9 HOH HOH B . M 4 HOH 3 10 10 HOH HOH B . M 4 HOH 4 11 11 HOH HOH B . M 4 HOH 5 12 12 HOH HOH B . M 4 HOH 6 13 13 HOH HOH B . M 4 HOH 7 14 14 HOH HOH B . M 4 HOH 8 15 15 HOH HOH B . M 4 HOH 9 16 16 HOH HOH B . M 4 HOH 10 17 17 HOH HOH B . M 4 HOH 11 18 18 HOH HOH B . M 4 HOH 12 19 19 HOH HOH B . M 4 HOH 13 20 20 HOH HOH B . M 4 HOH 14 115 115 HOH HOH B . M 4 HOH 15 116 25 HOH HOH B . M 4 HOH 16 117 28 HOH HOH B . M 4 HOH 17 118 118 HOH HOH B . M 4 HOH 18 119 119 HOH HOH B . M 4 HOH 19 120 29 HOH HOH B . M 4 HOH 20 121 121 HOH HOH B . M 4 HOH 21 122 122 HOH HOH B . M 4 HOH 22 123 30 HOH HOH B . M 4 HOH 23 124 124 HOH HOH B . M 4 HOH 24 125 31 HOH HOH B . M 4 HOH 25 126 33 HOH HOH B . M 4 HOH 26 127 37 HOH HOH B . M 4 HOH 27 128 128 HOH HOH B . M 4 HOH 28 129 39 HOH HOH B . M 4 HOH 29 130 42 HOH HOH B . M 4 HOH 30 131 131 HOH HOH B . M 4 HOH 31 132 132 HOH HOH B . M 4 HOH 32 133 133 HOH HOH B . M 4 HOH 33 134 46 HOH HOH B . M 4 HOH 34 135 135 HOH HOH B . M 4 HOH 35 136 136 HOH HOH B . M 4 HOH 36 137 137 HOH HOH B . M 4 HOH 37 138 138 HOH HOH B . M 4 HOH 38 139 51 HOH HOH B . M 4 HOH 39 140 53 HOH HOH B . M 4 HOH 40 141 54 HOH HOH B . M 4 HOH 41 142 142 HOH HOH B . M 4 HOH 42 143 143 HOH HOH B . M 4 HOH 43 144 58 HOH HOH B . M 4 HOH 44 145 145 HOH HOH B . M 4 HOH 45 146 146 HOH HOH B . M 4 HOH 46 147 147 HOH HOH B . M 4 HOH 47 148 59 HOH HOH B . M 4 HOH 48 149 60 HOH HOH B . M 4 HOH 49 150 150 HOH HOH B . M 4 HOH 50 151 151 HOH HOH B . M 4 HOH 51 152 61 HOH HOH B . M 4 HOH 52 153 65 HOH HOH B . M 4 HOH 53 154 154 HOH HOH B . M 4 HOH 54 155 155 HOH HOH B . M 4 HOH 55 156 156 HOH HOH B . M 4 HOH 56 157 157 HOH HOH B . M 4 HOH 57 158 67 HOH HOH B . M 4 HOH 58 159 159 HOH HOH B . M 4 HOH 59 160 160 HOH HOH B . M 4 HOH 60 161 161 HOH HOH B . M 4 HOH 61 162 162 HOH HOH B . M 4 HOH 62 163 163 HOH HOH B . M 4 HOH 63 164 164 HOH HOH B . M 4 HOH 64 165 165 HOH HOH B . M 4 HOH 65 166 166 HOH HOH B . M 4 HOH 66 167 167 HOH HOH B . M 4 HOH 67 168 68 HOH HOH B . M 4 HOH 68 169 169 HOH HOH B . M 4 HOH 69 170 71 HOH HOH B . M 4 HOH 70 171 171 HOH HOH B . M 4 HOH 71 172 172 HOH HOH B . M 4 HOH 72 173 173 HOH HOH B . M 4 HOH 73 174 174 HOH HOH B . M 4 HOH 74 175 175 HOH HOH B . M 4 HOH 75 176 176 HOH HOH B . M 4 HOH 76 177 177 HOH HOH B . M 4 HOH 77 178 178 HOH HOH B . M 4 HOH 78 179 75 HOH HOH B . M 4 HOH 79 180 180 HOH HOH B . M 4 HOH 80 181 76 HOH HOH B . M 4 HOH 81 182 182 HOH HOH B . M 4 HOH 82 183 77 HOH HOH B . M 4 HOH 83 184 78 HOH HOH B . M 4 HOH 84 185 185 HOH HOH B . M 4 HOH 85 186 80 HOH HOH B . M 4 HOH 86 187 81 HOH HOH B . M 4 HOH 87 188 84 HOH HOH B . M 4 HOH 88 189 189 HOH HOH B . M 4 HOH 89 190 190 HOH HOH B . M 4 HOH 90 191 85 HOH HOH B . M 4 HOH 91 192 86 HOH HOH B . M 4 HOH 92 193 193 HOH HOH B . M 4 HOH 93 194 88 HOH HOH B . M 4 HOH 94 195 89 HOH HOH B . M 4 HOH 95 196 92 HOH HOH B . M 4 HOH 96 197 93 HOH HOH B . M 4 HOH 97 198 198 HOH HOH B . M 4 HOH 98 199 199 HOH HOH B . M 4 HOH 99 200 200 HOH HOH B . M 4 HOH 100 201 201 HOH HOH B . M 4 HOH 101 202 202 HOH HOH B . M 4 HOH 102 203 95 HOH HOH B . M 4 HOH 103 204 204 HOH HOH B . M 4 HOH 104 205 98 HOH HOH B . M 4 HOH 105 206 102 HOH HOH B . M 4 HOH 106 207 104 HOH HOH B . M 4 HOH 107 208 208 HOH HOH B . M 4 HOH 108 209 209 HOH HOH B . M 4 HOH 109 210 210 HOH HOH B . M 4 HOH 110 211 211 HOH HOH B . M 4 HOH 111 212 212 HOH HOH B . M 4 HOH 112 213 213 HOH HOH B . M 4 HOH 113 214 214 HOH HOH B . M 4 HOH 114 215 215 HOH HOH B . M 4 HOH 115 216 216 HOH HOH B . M 4 HOH 116 217 217 HOH HOH B . M 4 HOH 117 218 218 HOH HOH B . M 4 HOH 118 219 105 HOH HOH B . M 4 HOH 119 220 220 HOH HOH B . M 4 HOH 120 221 106 HOH HOH B . M 4 HOH 121 222 109 HOH HOH B . M 4 HOH 122 223 113 HOH HOH B . M 4 HOH 123 226 226 HOH HOH B . M 4 HOH 124 230 230 HOH HOH B . M 4 HOH 125 231 231 HOH HOH B . M 4 HOH 126 232 232 HOH HOH B . M 4 HOH 127 242 242 HOH HOH B . M 4 HOH 128 243 243 HOH HOH B . M 4 HOH 129 246 246 HOH HOH B . M 4 HOH 130 247 247 HOH HOH B . M 4 HOH 131 248 248 HOH HOH B . M 4 HOH 132 250 250 HOH HOH B . M 4 HOH 133 252 252 HOH HOH B . M 4 HOH 134 253 253 HOH HOH B . M 4 HOH 135 254 254 HOH HOH B . M 4 HOH 136 255 255 HOH HOH B . M 4 HOH 137 256 256 HOH HOH B . M 4 HOH 138 257 257 HOH HOH B . M 4 HOH 139 258 258 HOH HOH B . M 4 HOH 140 259 259 HOH HOH B . M 4 HOH 141 264 264 HOH HOH B . M 4 HOH 142 266 266 HOH HOH B . M 4 HOH 143 267 267 HOH HOH B . M 4 HOH 144 268 268 HOH HOH B . M 4 HOH 145 273 273 HOH HOH B . M 4 HOH 146 274 274 HOH HOH B . M 4 HOH 147 275 275 HOH HOH B . M 4 HOH 148 278 278 HOH HOH B . M 4 HOH 149 279 279 HOH HOH B . M 4 HOH 150 280 280 HOH HOH B . M 4 HOH 151 281 281 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 52.620 _cell.length_b 52.620 _cell.length_c 137.336 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3ULJ _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3ULJ _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 152 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3ULJ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '2.5 M sodium acetate, 0.1 M HEPES , pH 7.0, EVAPORATION' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2010-07-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98141 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98141 _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 # _reflns.entry_id 3ULJ _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 1.06 _reflns.d_resolution_low 32.30 _reflns.number_all 100674 _reflns.number_obs 100170 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI 17.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.06 _reflns_shell.d_res_low 1.087 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs 0.61 _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.pdbx_Rsym_value 0.61 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3ULJ _refine.ls_d_res_high 1.0600 _refine.ls_d_res_low 32.3000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_number_reflns_obs 100170 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1206 _refine.ls_R_factor_R_work 0.1196 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1391 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 5027 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.9469 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.1100 _refine.aniso_B[2][2] 0.1100 _refine.aniso_B[3][3] -0.1700 _refine.aniso_B[1][2] 0.0600 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9830 _refine.correlation_coeff_Fo_to_Fc_free 0.9770 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.0210 _refine.overall_SU_ML 0.0130 _refine.overall_SU_B 0.5600 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'pdb entry 312Z' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 66.980 _refine.B_iso_min 3.860 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.120 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1378 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 272 _refine_hist.number_atoms_total 1688 _refine_hist.d_res_high 1.0600 _refine_hist.d_res_low 32.3000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1613 0.013 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1199 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2193 1.573 1.988 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2921 0.878 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 225 6.453 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 71 35.360 22.394 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 283 12.272 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15 15.121 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 219 0.092 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1857 0.009 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 356 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 992 2.913 5.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 399 0.964 5.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1599 4.259 7.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 621 5.064 9.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 570 6.783 11.000 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2812 1.722 3.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.0600 _refine_ls_shell.d_res_low 1.0870 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 6894 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2260 _refine_ls_shell.R_factor_R_free 0.2320 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 363 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 7257 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3ULJ _struct.title 'Crystal structure of apo Lin28B cold shock domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3ULJ _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'beta barrel, cold shock domain fold, nucleic acid binding, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 4 ? M N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B4F6I0_XENTR _struct_ref.pdbx_db_accession B4F6I0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DPQVLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGPG GNPCLGNE ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3ULJ A 3 ? 90 ? B4F6I0 27 ? 114 ? 27 114 2 1 3ULJ B 3 ? 90 ? B4F6I0 27 ? 114 ? 27 114 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3ULJ GLY A 1 ? UNP B4F6I0 ? ? 'expression tag' 25 1 1 3ULJ SER A 2 ? UNP B4F6I0 ? ? 'expression tag' 26 2 2 3ULJ GLY B 1 ? UNP B4F6I0 ? ? 'expression tag' 25 3 2 3ULJ SER B 2 ? UNP B4F6I0 ? ? 'expression tag' 26 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_and_software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 2650 ? 3 MORE -11 ? 3 'SSA (A^2)' 9820 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,L 2 1 B,J,K,M 3 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.7786666667 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 46 ? LEU A 48 ? SER A 70 LEU A 72 5 ? 3 HELX_P HELX_P2 2 GLY A 80 ? ASN A 84 ? GLY A 104 ASN A 108 5 ? 5 HELX_P HELX_P3 3 SER B 46 ? LEU B 48 ? SER B 70 LEU B 72 5 ? 3 HELX_P HELX_P4 4 GLY B 80 ? ASN B 84 ? GLY B 104 ASN B 108 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 7 ? ASN A 17 ? LEU A 31 ASN A 41 A 2 PHE A 22 ? ARG A 30 ? PHE A 46 ARG A 54 A 3 SER A 33 ? HIS A 44 ? SER A 57 HIS A 68 A 4 GLY A 72 ? THR A 79 ? GLY A 96 THR A 103 A 5 PRO A 61 ? SER A 69 ? PRO A 85 SER A 93 A 6 LEU A 7 ? ASN A 17 ? LEU A 31 ASN A 41 B 1 LEU B 7 ? ASN B 17 ? LEU B 31 ASN B 41 B 2 PHE B 22 ? ARG B 30 ? PHE B 46 ARG B 54 B 3 SER B 33 ? HIS B 44 ? SER B 57 HIS B 68 B 4 GLY B 72 ? THR B 79 ? GLY B 96 THR B 103 B 5 PRO B 61 ? SER B 69 ? PRO B 85 SER B 93 B 6 LEU B 7 ? ASN B 17 ? LEU B 31 ASN B 41 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 12 ? N HIS A 36 O SER A 26 ? O SER A 50 A 2 3 N MET A 27 ? N MET A 51 O VAL A 39 ? O VAL A 63 A 3 4 N PHE A 42 ? N PHE A 66 O SER A 75 ? O SER A 99 A 4 5 O GLY A 72 ? O GLY A 96 N SER A 69 ? N SER A 93 A 5 6 O PHE A 66 ? O PHE A 90 N LEU A 7 ? N LEU A 31 B 1 2 N HIS B 12 ? N HIS B 36 O SER B 26 ? O SER B 50 B 2 3 N MET B 27 ? N MET B 51 O VAL B 39 ? O VAL B 63 B 3 4 N PHE B 42 ? N PHE B 66 O PHE B 73 ? O PHE B 97 B 4 5 O THR B 79 ? O THR B 103 N GLU B 63 ? N GLU B 87 B 5 6 O PHE B 66 ? O PHE B 90 N LEU B 7 ? N LEU B 31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 3 ? 6 'BINDING SITE FOR RESIDUE ACT A 3' AC2 Software A ACT 4 ? 6 'BINDING SITE FOR RESIDUE ACT A 4' AC3 Software A ACT 5 ? 3 'BINDING SITE FOR RESIDUE ACT A 5' AC4 Software A ACT 6 ? 5 'BINDING SITE FOR RESIDUE ACT A 6' AC5 Software A ACT 8 ? 7 'BINDING SITE FOR RESIDUE ACT A 8' AC6 Software A GOL 2 ? 8 'BINDING SITE FOR RESIDUE GOL A 2' AC7 Software A ACT 9 ? 5 'BINDING SITE FOR RESIDUE ACT A 9' AC8 Software B ACT 1 ? 4 'BINDING SITE FOR RESIDUE ACT B 1' AC9 Software B ACT 7 ? 4 'BINDING SITE FOR RESIDUE ACT B 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLN A 45 ? GLN A 69 . ? 1_555 ? 2 AC1 6 PHE A 53 ? PHE A 77 . ? 1_555 ? 3 AC1 6 ARG A 54 ? ARG A 78 . ? 1_555 ? 4 AC1 6 HOH L . ? HOH A 186 . ? 1_555 ? 5 AC1 6 HOH L . ? HOH A 227 . ? 1_555 ? 6 AC1 6 ARG B 8 ? ARG B 32 . ? 1_665 ? 7 AC2 6 GOL H . ? GOL A 2 . ? 1_555 ? 8 AC2 6 PHE A 73 ? PHE A 97 . ? 1_555 ? 9 AC2 6 GLU B 51 ? GLU B 75 . ? 4_565 ? 10 AC2 6 GLY B 52 ? GLY B 76 . ? 4_565 ? 11 AC2 6 HOH M . ? HOH B 134 . ? 4_565 ? 12 AC2 6 HOH M . ? HOH B 275 . ? 4_565 ? 13 AC3 3 LYS A 47 ? LYS A 71 . ? 1_555 ? 14 AC3 3 ARG A 77 ? ARG A 101 . ? 1_555 ? 15 AC3 3 HOH L . ? HOH A 185 . ? 1_555 ? 16 AC4 5 HIS A 44 ? HIS A 68 . ? 1_555 ? 17 AC4 5 LYS A 47 ? LYS A 71 . ? 1_555 ? 18 AC4 5 HOH L . ? HOH A 187 . ? 1_555 ? 19 AC4 5 ACT K . ? ACT B 7 . ? 4_565 ? 20 AC4 5 ARG B 19 ? ARG B 43 . ? 4_565 ? 21 AC5 7 PHE A 16 ? PHE A 40 . ? 1_555 ? 22 AC5 7 ASN A 17 ? ASN A 41 . ? 1_555 ? 23 AC5 7 VAL A 18 ? VAL A 42 . ? 1_555 ? 24 AC5 7 ARG A 19 ? ARG A 43 . ? 1_555 ? 25 AC5 7 HOH L . ? HOH A 194 . ? 1_555 ? 26 AC5 7 HOH L . ? HOH A 241 . ? 1_555 ? 27 AC5 7 HOH M . ? HOH B 139 . ? 1_665 ? 28 AC6 8 ACT D . ? ACT A 4 . ? 1_555 ? 29 AC6 8 ARG A 30 ? ARG A 54 . ? 1_555 ? 30 AC6 8 LYS A 68 ? LYS A 92 . ? 1_555 ? 31 AC6 8 PHE A 73 ? PHE A 97 . ? 1_555 ? 32 AC6 8 TRP B 15 ? TRP B 39 . ? 1_555 ? 33 AC6 8 ASN B 17 ? ASN B 41 . ? 1_555 ? 34 AC6 8 GLU B 58 ? GLU B 82 . ? 1_555 ? 35 AC6 8 HOH M . ? HOH B 134 . ? 4_565 ? 36 AC7 5 THR A 28 ? THR A 52 . ? 1_555 ? 37 AC7 5 SER A 29 ? SER A 53 . ? 1_555 ? 38 AC7 5 LYS B 68 ? LYS B 92 . ? 6_555 ? 39 AC7 5 SER B 69 ? SER B 93 . ? 6_555 ? 40 AC7 5 HOH M . ? HOH B 190 . ? 6_555 ? 41 AC8 4 ASN A 17 ? ASN A 41 . ? 4_455 ? 42 AC8 4 ASN B 89 ? ASN B 113 . ? 1_555 ? 43 AC8 4 HOH M . ? HOH B 242 . ? 1_555 ? 44 AC8 4 HOH M . ? HOH B 278 . ? 1_555 ? 45 AC9 4 ACT F . ? ACT A 6 . ? 4_455 ? 46 AC9 4 PHE A 42 ? PHE A 66 . ? 4_455 ? 47 AC9 4 GLU A 74 ? GLU A 98 . ? 4_455 ? 48 AC9 4 ARG B 19 ? ARG B 43 . ? 1_555 ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 25 ? A GLY 1 2 1 Y 1 A SER 26 ? A SER 2 3 1 Y 1 A ASP 27 ? A ASP 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ARG N N N N 8 ARG CA C N S 9 ARG C C N N 10 ARG O O N N 11 ARG CB C N N 12 ARG CG C N N 13 ARG CD C N N 14 ARG NE N N N 15 ARG CZ C N N 16 ARG NH1 N N N 17 ARG NH2 N N N 18 ARG OXT O N N 19 ARG H H N N 20 ARG H2 H N N 21 ARG HA H N N 22 ARG HB2 H N N 23 ARG HB3 H N N 24 ARG HG2 H N N 25 ARG HG3 H N N 26 ARG HD2 H N N 27 ARG HD3 H N N 28 ARG HE H N N 29 ARG HH11 H N N 30 ARG HH12 H N N 31 ARG HH21 H N N 32 ARG HH22 H N N 33 ARG HXT H N N 34 ASN N N N N 35 ASN CA C N S 36 ASN C C N N 37 ASN O O N N 38 ASN CB C N N 39 ASN CG C N N 40 ASN OD1 O N N 41 ASN ND2 N N N 42 ASN OXT O N N 43 ASN H H N N 44 ASN H2 H N N 45 ASN HA H N N 46 ASN HB2 H N N 47 ASN HB3 H N N 48 ASN HD21 H N N 49 ASN HD22 H N N 50 ASN HXT H N N 51 ASP N N N N 52 ASP CA C N S 53 ASP C C N N 54 ASP O O N N 55 ASP CB C N N 56 ASP CG C N N 57 ASP OD1 O N N 58 ASP OD2 O N N 59 ASP OXT O N N 60 ASP H H N N 61 ASP H2 H N N 62 ASP HA H N N 63 ASP HB2 H N N 64 ASP HB3 H N N 65 ASP HD2 H N N 66 ASP HXT H N N 67 CYS N N N N 68 CYS CA C N R 69 CYS C C N N 70 CYS O O N N 71 CYS CB C N N 72 CYS SG S N N 73 CYS OXT O N N 74 CYS H H N N 75 CYS H2 H N N 76 CYS HA H N N 77 CYS HB2 H N N 78 CYS HB3 H N N 79 CYS HG H N N 80 CYS HXT H N N 81 GLN N N N N 82 GLN CA C N S 83 GLN C C N N 84 GLN O O N N 85 GLN CB C N N 86 GLN CG C N N 87 GLN CD C N N 88 GLN OE1 O N N 89 GLN NE2 N N N 90 GLN OXT O N N 91 GLN H H N N 92 GLN H2 H N N 93 GLN HA H N N 94 GLN HB2 H N N 95 GLN HB3 H N N 96 GLN HG2 H N N 97 GLN HG3 H N N 98 GLN HE21 H N N 99 GLN HE22 H N N 100 GLN HXT H N N 101 GLU N N N N 102 GLU CA C N S 103 GLU C C N N 104 GLU O O N N 105 GLU CB C N N 106 GLU CG C N N 107 GLU CD C N N 108 GLU OE1 O N N 109 GLU OE2 O N N 110 GLU OXT O N N 111 GLU H H N N 112 GLU H2 H N N 113 GLU HA H N N 114 GLU HB2 H N N 115 GLU HB3 H N N 116 GLU HG2 H N N 117 GLU HG3 H N N 118 GLU HE2 H N N 119 GLU HXT H N N 120 GLY N N N N 121 GLY CA C N N 122 GLY C C N N 123 GLY O O N N 124 GLY OXT O N N 125 GLY H H N N 126 GLY H2 H N N 127 GLY HA2 H N N 128 GLY HA3 H N N 129 GLY HXT H N N 130 GOL C1 C N N 131 GOL O1 O N N 132 GOL C2 C N N 133 GOL O2 O N N 134 GOL C3 C N N 135 GOL O3 O N N 136 GOL H11 H N N 137 GOL H12 H N N 138 GOL HO1 H N N 139 GOL H2 H N N 140 GOL HO2 H N N 141 GOL H31 H N N 142 GOL H32 H N N 143 GOL HO3 H N N 144 HIS N N N N 145 HIS CA C N S 146 HIS C C N N 147 HIS O O N N 148 HIS CB C N N 149 HIS CG C Y N 150 HIS ND1 N Y N 151 HIS CD2 C Y N 152 HIS CE1 C Y N 153 HIS NE2 N Y N 154 HIS OXT O N N 155 HIS H H N N 156 HIS H2 H N N 157 HIS HA H N N 158 HIS HB2 H N N 159 HIS HB3 H N N 160 HIS HD1 H N N 161 HIS HD2 H N N 162 HIS HE1 H N N 163 HIS HE2 H N N 164 HIS HXT H N N 165 HOH O O N N 166 HOH H1 H N N 167 HOH H2 H N N 168 ILE N N N N 169 ILE CA C N S 170 ILE C C N N 171 ILE O O N N 172 ILE CB C N S 173 ILE CG1 C N N 174 ILE CG2 C N N 175 ILE CD1 C N N 176 ILE OXT O N N 177 ILE H H N N 178 ILE H2 H N N 179 ILE HA H N N 180 ILE HB H N N 181 ILE HG12 H N N 182 ILE HG13 H N N 183 ILE HG21 H N N 184 ILE HG22 H N N 185 ILE HG23 H N N 186 ILE HD11 H N N 187 ILE HD12 H N N 188 ILE HD13 H N N 189 ILE HXT H N N 190 LEU N N N N 191 LEU CA C N S 192 LEU C C N N 193 LEU O O N N 194 LEU CB C N N 195 LEU CG C N N 196 LEU CD1 C N N 197 LEU CD2 C N N 198 LEU OXT O N N 199 LEU H H N N 200 LEU H2 H N N 201 LEU HA H N N 202 LEU HB2 H N N 203 LEU HB3 H N N 204 LEU HG H N N 205 LEU HD11 H N N 206 LEU HD12 H N N 207 LEU HD13 H N N 208 LEU HD21 H N N 209 LEU HD22 H N N 210 LEU HD23 H N N 211 LEU HXT H N N 212 LYS N N N N 213 LYS CA C N S 214 LYS C C N N 215 LYS O O N N 216 LYS CB C N N 217 LYS CG C N N 218 LYS CD C N N 219 LYS CE C N N 220 LYS NZ N N N 221 LYS OXT O N N 222 LYS H H N N 223 LYS H2 H N N 224 LYS HA H N N 225 LYS HB2 H N N 226 LYS HB3 H N N 227 LYS HG2 H N N 228 LYS HG3 H N N 229 LYS HD2 H N N 230 LYS HD3 H N N 231 LYS HE2 H N N 232 LYS HE3 H N N 233 LYS HZ1 H N N 234 LYS HZ2 H N N 235 LYS HZ3 H N N 236 LYS HXT H N N 237 MET N N N N 238 MET CA C N S 239 MET C C N N 240 MET O O N N 241 MET CB C N N 242 MET CG C N N 243 MET SD S N N 244 MET CE C N N 245 MET OXT O N N 246 MET H H N N 247 MET H2 H N N 248 MET HA H N N 249 MET HB2 H N N 250 MET HB3 H N N 251 MET HG2 H N N 252 MET HG3 H N N 253 MET HE1 H N N 254 MET HE2 H N N 255 MET HE3 H N N 256 MET HXT H N N 257 PHE N N N N 258 PHE CA C N S 259 PHE C C N N 260 PHE O O N N 261 PHE CB C N N 262 PHE CG C Y N 263 PHE CD1 C Y N 264 PHE CD2 C Y N 265 PHE CE1 C Y N 266 PHE CE2 C Y N 267 PHE CZ C Y N 268 PHE OXT O N N 269 PHE H H N N 270 PHE H2 H N N 271 PHE HA H N N 272 PHE HB2 H N N 273 PHE HB3 H N N 274 PHE HD1 H N N 275 PHE HD2 H N N 276 PHE HE1 H N N 277 PHE HE2 H N N 278 PHE HZ H N N 279 PHE HXT H N N 280 PRO N N N N 281 PRO CA C N S 282 PRO C C N N 283 PRO O O N N 284 PRO CB C N N 285 PRO CG C N N 286 PRO CD C N N 287 PRO OXT O N N 288 PRO H H N N 289 PRO HA H N N 290 PRO HB2 H N N 291 PRO HB3 H N N 292 PRO HG2 H N N 293 PRO HG3 H N N 294 PRO HD2 H N N 295 PRO HD3 H N N 296 PRO HXT H N N 297 SER N N N N 298 SER CA C N S 299 SER C C N N 300 SER O O N N 301 SER CB C N N 302 SER OG O N N 303 SER OXT O N N 304 SER H H N N 305 SER H2 H N N 306 SER HA H N N 307 SER HB2 H N N 308 SER HB3 H N N 309 SER HG H N N 310 SER HXT H N N 311 THR N N N N 312 THR CA C N S 313 THR C C N N 314 THR O O N N 315 THR CB C N R 316 THR OG1 O N N 317 THR CG2 C N N 318 THR OXT O N N 319 THR H H N N 320 THR H2 H N N 321 THR HA H N N 322 THR HB H N N 323 THR HG1 H N N 324 THR HG21 H N N 325 THR HG22 H N N 326 THR HG23 H N N 327 THR HXT H N N 328 TRP N N N N 329 TRP CA C N S 330 TRP C C N N 331 TRP O O N N 332 TRP CB C N N 333 TRP CG C Y N 334 TRP CD1 C Y N 335 TRP CD2 C Y N 336 TRP NE1 N Y N 337 TRP CE2 C Y N 338 TRP CE3 C Y N 339 TRP CZ2 C Y N 340 TRP CZ3 C Y N 341 TRP CH2 C Y N 342 TRP OXT O N N 343 TRP H H N N 344 TRP H2 H N N 345 TRP HA H N N 346 TRP HB2 H N N 347 TRP HB3 H N N 348 TRP HD1 H N N 349 TRP HE1 H N N 350 TRP HE3 H N N 351 TRP HZ2 H N N 352 TRP HZ3 H N N 353 TRP HH2 H N N 354 TRP HXT H N N 355 TYR N N N N 356 TYR CA C N S 357 TYR C C N N 358 TYR O O N N 359 TYR CB C N N 360 TYR CG C Y N 361 TYR CD1 C Y N 362 TYR CD2 C Y N 363 TYR CE1 C Y N 364 TYR CE2 C Y N 365 TYR CZ C Y N 366 TYR OH O N N 367 TYR OXT O N N 368 TYR H H N N 369 TYR H2 H N N 370 TYR HA H N N 371 TYR HB2 H N N 372 TYR HB3 H N N 373 TYR HD1 H N N 374 TYR HD2 H N N 375 TYR HE1 H N N 376 TYR HE2 H N N 377 TYR HH H N N 378 TYR HXT H N N 379 VAL N N N N 380 VAL CA C N S 381 VAL C C N N 382 VAL O O N N 383 VAL CB C N N 384 VAL CG1 C N N 385 VAL CG2 C N N 386 VAL OXT O N N 387 VAL H H N N 388 VAL H2 H N N 389 VAL HA H N N 390 VAL HB H N N 391 VAL HG11 H N N 392 VAL HG12 H N N 393 VAL HG13 H N N 394 VAL HG21 H N N 395 VAL HG22 H N N 396 VAL HG23 H N N 397 VAL HXT H N N 398 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ARG N CA sing N N 7 ARG N H sing N N 8 ARG N H2 sing N N 9 ARG CA C sing N N 10 ARG CA CB sing N N 11 ARG CA HA sing N N 12 ARG C O doub N N 13 ARG C OXT sing N N 14 ARG CB CG sing N N 15 ARG CB HB2 sing N N 16 ARG CB HB3 sing N N 17 ARG CG CD sing N N 18 ARG CG HG2 sing N N 19 ARG CG HG3 sing N N 20 ARG CD NE sing N N 21 ARG CD HD2 sing N N 22 ARG CD HD3 sing N N 23 ARG NE CZ sing N N 24 ARG NE HE sing N N 25 ARG CZ NH1 sing N N 26 ARG CZ NH2 doub N N 27 ARG NH1 HH11 sing N N 28 ARG NH1 HH12 sing N N 29 ARG NH2 HH21 sing N N 30 ARG NH2 HH22 sing N N 31 ARG OXT HXT sing N N 32 ASN N CA sing N N 33 ASN N H sing N N 34 ASN N H2 sing N N 35 ASN CA C sing N N 36 ASN CA CB sing N N 37 ASN CA HA sing N N 38 ASN C O doub N N 39 ASN C OXT sing N N 40 ASN CB CG sing N N 41 ASN CB HB2 sing N N 42 ASN CB HB3 sing N N 43 ASN CG OD1 doub N N 44 ASN CG ND2 sing N N 45 ASN ND2 HD21 sing N N 46 ASN ND2 HD22 sing N N 47 ASN OXT HXT sing N N 48 ASP N CA sing N N 49 ASP N H sing N N 50 ASP N H2 sing N N 51 ASP CA C sing N N 52 ASP CA CB sing N N 53 ASP CA HA sing N N 54 ASP C O doub N N 55 ASP C OXT sing N N 56 ASP CB CG sing N N 57 ASP CB HB2 sing N N 58 ASP CB HB3 sing N N 59 ASP CG OD1 doub N N 60 ASP CG OD2 sing N N 61 ASP OD2 HD2 sing N N 62 ASP OXT HXT sing N N 63 CYS N CA sing N N 64 CYS N H sing N N 65 CYS N H2 sing N N 66 CYS CA C sing N N 67 CYS CA CB sing N N 68 CYS CA HA sing N N 69 CYS C O doub N N 70 CYS C OXT sing N N 71 CYS CB SG sing N N 72 CYS CB HB2 sing N N 73 CYS CB HB3 sing N N 74 CYS SG HG sing N N 75 CYS OXT HXT sing N N 76 GLN N CA sing N N 77 GLN N H sing N N 78 GLN N H2 sing N N 79 GLN CA C sing N N 80 GLN CA CB sing N N 81 GLN CA HA sing N N 82 GLN C O doub N N 83 GLN C OXT sing N N 84 GLN CB CG sing N N 85 GLN CB HB2 sing N N 86 GLN CB HB3 sing N N 87 GLN CG CD sing N N 88 GLN CG HG2 sing N N 89 GLN CG HG3 sing N N 90 GLN CD OE1 doub N N 91 GLN CD NE2 sing N N 92 GLN NE2 HE21 sing N N 93 GLN NE2 HE22 sing N N 94 GLN OXT HXT sing N N 95 GLU N CA sing N N 96 GLU N H sing N N 97 GLU N H2 sing N N 98 GLU CA C sing N N 99 GLU CA CB sing N N 100 GLU CA HA sing N N 101 GLU C O doub N N 102 GLU C OXT sing N N 103 GLU CB CG sing N N 104 GLU CB HB2 sing N N 105 GLU CB HB3 sing N N 106 GLU CG CD sing N N 107 GLU CG HG2 sing N N 108 GLU CG HG3 sing N N 109 GLU CD OE1 doub N N 110 GLU CD OE2 sing N N 111 GLU OE2 HE2 sing N N 112 GLU OXT HXT sing N N 113 GLY N CA sing N N 114 GLY N H sing N N 115 GLY N H2 sing N N 116 GLY CA C sing N N 117 GLY CA HA2 sing N N 118 GLY CA HA3 sing N N 119 GLY C O doub N N 120 GLY C OXT sing N N 121 GLY OXT HXT sing N N 122 GOL C1 O1 sing N N 123 GOL C1 C2 sing N N 124 GOL C1 H11 sing N N 125 GOL C1 H12 sing N N 126 GOL O1 HO1 sing N N 127 GOL C2 O2 sing N N 128 GOL C2 C3 sing N N 129 GOL C2 H2 sing N N 130 GOL O2 HO2 sing N N 131 GOL C3 O3 sing N N 132 GOL C3 H31 sing N N 133 GOL C3 H32 sing N N 134 GOL O3 HO3 sing N N 135 HIS N CA sing N N 136 HIS N H sing N N 137 HIS N H2 sing N N 138 HIS CA C sing N N 139 HIS CA CB sing N N 140 HIS CA HA sing N N 141 HIS C O doub N N 142 HIS C OXT sing N N 143 HIS CB CG sing N N 144 HIS CB HB2 sing N N 145 HIS CB HB3 sing N N 146 HIS CG ND1 sing Y N 147 HIS CG CD2 doub Y N 148 HIS ND1 CE1 doub Y N 149 HIS ND1 HD1 sing N N 150 HIS CD2 NE2 sing Y N 151 HIS CD2 HD2 sing N N 152 HIS CE1 NE2 sing Y N 153 HIS CE1 HE1 sing N N 154 HIS NE2 HE2 sing N N 155 HIS OXT HXT sing N N 156 HOH O H1 sing N N 157 HOH O H2 sing N N 158 ILE N CA sing N N 159 ILE N H sing N N 160 ILE N H2 sing N N 161 ILE CA C sing N N 162 ILE CA CB sing N N 163 ILE CA HA sing N N 164 ILE C O doub N N 165 ILE C OXT sing N N 166 ILE CB CG1 sing N N 167 ILE CB CG2 sing N N 168 ILE CB HB sing N N 169 ILE CG1 CD1 sing N N 170 ILE CG1 HG12 sing N N 171 ILE CG1 HG13 sing N N 172 ILE CG2 HG21 sing N N 173 ILE CG2 HG22 sing N N 174 ILE CG2 HG23 sing N N 175 ILE CD1 HD11 sing N N 176 ILE CD1 HD12 sing N N 177 ILE CD1 HD13 sing N N 178 ILE OXT HXT sing N N 179 LEU N CA sing N N 180 LEU N H sing N N 181 LEU N H2 sing N N 182 LEU CA C sing N N 183 LEU CA CB sing N N 184 LEU CA HA sing N N 185 LEU C O doub N N 186 LEU C OXT sing N N 187 LEU CB CG sing N N 188 LEU CB HB2 sing N N 189 LEU CB HB3 sing N N 190 LEU CG CD1 sing N N 191 LEU CG CD2 sing N N 192 LEU CG HG sing N N 193 LEU CD1 HD11 sing N N 194 LEU CD1 HD12 sing N N 195 LEU CD1 HD13 sing N N 196 LEU CD2 HD21 sing N N 197 LEU CD2 HD22 sing N N 198 LEU CD2 HD23 sing N N 199 LEU OXT HXT sing N N 200 LYS N CA sing N N 201 LYS N H sing N N 202 LYS N H2 sing N N 203 LYS CA C sing N N 204 LYS CA CB sing N N 205 LYS CA HA sing N N 206 LYS C O doub N N 207 LYS C OXT sing N N 208 LYS CB CG sing N N 209 LYS CB HB2 sing N N 210 LYS CB HB3 sing N N 211 LYS CG CD sing N N 212 LYS CG HG2 sing N N 213 LYS CG HG3 sing N N 214 LYS CD CE sing N N 215 LYS CD HD2 sing N N 216 LYS CD HD3 sing N N 217 LYS CE NZ sing N N 218 LYS CE HE2 sing N N 219 LYS CE HE3 sing N N 220 LYS NZ HZ1 sing N N 221 LYS NZ HZ2 sing N N 222 LYS NZ HZ3 sing N N 223 LYS OXT HXT sing N N 224 MET N CA sing N N 225 MET N H sing N N 226 MET N H2 sing N N 227 MET CA C sing N N 228 MET CA CB sing N N 229 MET CA HA sing N N 230 MET C O doub N N 231 MET C OXT sing N N 232 MET CB CG sing N N 233 MET CB HB2 sing N N 234 MET CB HB3 sing N N 235 MET CG SD sing N N 236 MET CG HG2 sing N N 237 MET CG HG3 sing N N 238 MET SD CE sing N N 239 MET CE HE1 sing N N 240 MET CE HE2 sing N N 241 MET CE HE3 sing N N 242 MET OXT HXT sing N N 243 PHE N CA sing N N 244 PHE N H sing N N 245 PHE N H2 sing N N 246 PHE CA C sing N N 247 PHE CA CB sing N N 248 PHE CA HA sing N N 249 PHE C O doub N N 250 PHE C OXT sing N N 251 PHE CB CG sing N N 252 PHE CB HB2 sing N N 253 PHE CB HB3 sing N N 254 PHE CG CD1 doub Y N 255 PHE CG CD2 sing Y N 256 PHE CD1 CE1 sing Y N 257 PHE CD1 HD1 sing N N 258 PHE CD2 CE2 doub Y N 259 PHE CD2 HD2 sing N N 260 PHE CE1 CZ doub Y N 261 PHE CE1 HE1 sing N N 262 PHE CE2 CZ sing Y N 263 PHE CE2 HE2 sing N N 264 PHE CZ HZ sing N N 265 PHE OXT HXT sing N N 266 PRO N CA sing N N 267 PRO N CD sing N N 268 PRO N H sing N N 269 PRO CA C sing N N 270 PRO CA CB sing N N 271 PRO CA HA sing N N 272 PRO C O doub N N 273 PRO C OXT sing N N 274 PRO CB CG sing N N 275 PRO CB HB2 sing N N 276 PRO CB HB3 sing N N 277 PRO CG CD sing N N 278 PRO CG HG2 sing N N 279 PRO CG HG3 sing N N 280 PRO CD HD2 sing N N 281 PRO CD HD3 sing N N 282 PRO OXT HXT sing N N 283 SER N CA sing N N 284 SER N H sing N N 285 SER N H2 sing N N 286 SER CA C sing N N 287 SER CA CB sing N N 288 SER CA HA sing N N 289 SER C O doub N N 290 SER C OXT sing N N 291 SER CB OG sing N N 292 SER CB HB2 sing N N 293 SER CB HB3 sing N N 294 SER OG HG sing N N 295 SER OXT HXT sing N N 296 THR N CA sing N N 297 THR N H sing N N 298 THR N H2 sing N N 299 THR CA C sing N N 300 THR CA CB sing N N 301 THR CA HA sing N N 302 THR C O doub N N 303 THR C OXT sing N N 304 THR CB OG1 sing N N 305 THR CB CG2 sing N N 306 THR CB HB sing N N 307 THR OG1 HG1 sing N N 308 THR CG2 HG21 sing N N 309 THR CG2 HG22 sing N N 310 THR CG2 HG23 sing N N 311 THR OXT HXT sing N N 312 TRP N CA sing N N 313 TRP N H sing N N 314 TRP N H2 sing N N 315 TRP CA C sing N N 316 TRP CA CB sing N N 317 TRP CA HA sing N N 318 TRP C O doub N N 319 TRP C OXT sing N N 320 TRP CB CG sing N N 321 TRP CB HB2 sing N N 322 TRP CB HB3 sing N N 323 TRP CG CD1 doub Y N 324 TRP CG CD2 sing Y N 325 TRP CD1 NE1 sing Y N 326 TRP CD1 HD1 sing N N 327 TRP CD2 CE2 doub Y N 328 TRP CD2 CE3 sing Y N 329 TRP NE1 CE2 sing Y N 330 TRP NE1 HE1 sing N N 331 TRP CE2 CZ2 sing Y N 332 TRP CE3 CZ3 doub Y N 333 TRP CE3 HE3 sing N N 334 TRP CZ2 CH2 doub Y N 335 TRP CZ2 HZ2 sing N N 336 TRP CZ3 CH2 sing Y N 337 TRP CZ3 HZ3 sing N N 338 TRP CH2 HH2 sing N N 339 TRP OXT HXT sing N N 340 TYR N CA sing N N 341 TYR N H sing N N 342 TYR N H2 sing N N 343 TYR CA C sing N N 344 TYR CA CB sing N N 345 TYR CA HA sing N N 346 TYR C O doub N N 347 TYR C OXT sing N N 348 TYR CB CG sing N N 349 TYR CB HB2 sing N N 350 TYR CB HB3 sing N N 351 TYR CG CD1 doub Y N 352 TYR CG CD2 sing Y N 353 TYR CD1 CE1 sing Y N 354 TYR CD1 HD1 sing N N 355 TYR CD2 CE2 doub Y N 356 TYR CD2 HD2 sing N N 357 TYR CE1 CZ doub Y N 358 TYR CE1 HE1 sing N N 359 TYR CE2 CZ sing Y N 360 TYR CE2 HE2 sing N N 361 TYR CZ OH sing N N 362 TYR OH HH sing N N 363 TYR OXT HXT sing N N 364 VAL N CA sing N N 365 VAL N H sing N N 366 VAL N H2 sing N N 367 VAL CA C sing N N 368 VAL CA CB sing N N 369 VAL CA HA sing N N 370 VAL C O doub N N 371 VAL C OXT sing N N 372 VAL CB CG1 sing N N 373 VAL CB CG2 sing N N 374 VAL CB HB sing N N 375 VAL CG1 HG11 sing N N 376 VAL CG1 HG12 sing N N 377 VAL CG1 HG13 sing N N 378 VAL CG2 HG21 sing N N 379 VAL CG2 HG22 sing N N 380 VAL CG2 HG23 sing N N 381 VAL OXT HXT sing N N 382 # _pdbx_initial_refinement_model.accession_code 3I2Z _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 3ULJ _atom_sites.fract_transf_matrix[1][1] 0.019004 _atom_sites.fract_transf_matrix[1][2] 0.010972 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021944 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007281 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_