HEADER GENE REGULATION/TRANSCRIPTION ACTIVATOR 11-NOV-11 3ULQ TITLE CRYSTAL STRUCTURE OF THE ANTI-ACTIVATOR RAPF COMPLEXED WITH THE TITLE 2 RESPONSE REGULATOR COMA DNA BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR ASPARTATE PHOSPHATASE F; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN COMA; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: DNA BINDING DOMAIN, UNP RESIDUES 146-214; COMPND 10 SYNONYM: COMPETENCE PROTEIN A; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: RAPF, YWHJ, BSU37460; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 9 ORGANISM_TAXID: 1423; SOURCE 10 GENE: COMA, COMA1, COMAA, BSU31680; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETRATRICOPEPTIDE REPEAT, RESPONSE REGULATOR HELIX-TURN-HELX DNA KEYWDS 2 BINDING, 3-HELIX BUNDLE, HYDROLASE-TRANSCRIPTION ACTIVATOR COMPLEX, KEYWDS 3 GENE REGULATION-TRANSCRIPTION ACTIVATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.BAKER,M.B.NEIDITCH REVDAT 3 13-SEP-23 3ULQ 1 REMARK SEQADV LINK REVDAT 2 25-JAN-12 3ULQ 1 JRNL REVDAT 1 04-JAN-12 3ULQ 0 JRNL AUTH M.D.BAKER,M.B.NEIDITCH JRNL TITL STRUCTURAL BASIS OF RESPONSE REGULATOR INHIBITION BY A JRNL TITL 2 BACTERIAL ANTI-ACTIVATOR PROTEIN. JRNL REF PLOS BIOL. V. 9 01226 2011 JRNL REFN ISSN 1544-9173 JRNL PMID 22215984 JRNL DOI 10.1371/JOURNAL.PBIO.1001226 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 33197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7630 - 5.2357 0.93 2592 157 0.1766 0.2038 REMARK 3 2 5.2357 - 4.1685 1.00 2697 145 0.1440 0.1693 REMARK 3 3 4.1685 - 3.6454 1.00 2642 161 0.1708 0.2114 REMARK 3 4 3.6454 - 3.3138 1.00 2652 129 0.2005 0.2170 REMARK 3 5 3.3138 - 3.0772 1.00 2643 148 0.2110 0.3098 REMARK 3 6 3.0772 - 2.8964 1.00 2613 121 0.2224 0.2676 REMARK 3 7 2.8964 - 2.7517 1.00 2606 166 0.2336 0.2661 REMARK 3 8 2.7517 - 2.6322 1.00 2602 139 0.2286 0.2587 REMARK 3 9 2.6322 - 2.5311 1.00 2617 138 0.2201 0.2840 REMARK 3 10 2.5311 - 2.4439 1.00 2619 116 0.2398 0.2584 REMARK 3 11 2.4439 - 2.3676 1.00 2619 138 0.2415 0.2963 REMARK 3 12 2.3676 - 2.3000 1.00 2609 128 0.2540 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 47.94 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73640 REMARK 3 B22 (A**2) : -2.12350 REMARK 3 B33 (A**2) : 2.85990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3726 REMARK 3 ANGLE : 1.033 5005 REMARK 3 CHIRALITY : 0.070 520 REMARK 3 PLANARITY : 0.003 640 REMARK 3 DIHEDRAL : 14.421 1413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:72) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1409 -4.8051 9.1091 REMARK 3 T TENSOR REMARK 3 T11: 0.3347 T22: 0.3922 REMARK 3 T33: 0.3405 T12: -0.0384 REMARK 3 T13: 0.0317 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.8200 L22: 6.5588 REMARK 3 L33: 2.8306 L12: 2.0031 REMARK 3 L13: -0.3264 L23: -0.8855 REMARK 3 S TENSOR REMARK 3 S11: 0.1247 S12: -0.3594 S13: 0.0880 REMARK 3 S21: 0.2950 S22: -0.2324 S23: 0.3440 REMARK 3 S31: -0.1386 S32: -0.0274 S33: -0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 94:133) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1516 -2.4085 17.0230 REMARK 3 T TENSOR REMARK 3 T11: 0.3901 T22: 0.4527 REMARK 3 T33: 0.3742 T12: -0.0818 REMARK 3 T13: 0.0029 T23: 0.0767 REMARK 3 L TENSOR REMARK 3 L11: 2.6558 L22: 1.9613 REMARK 3 L33: 1.7852 L12: 0.2505 REMARK 3 L13: 1.9240 L23: 1.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.2523 S13: -0.2504 REMARK 3 S21: 0.1947 S22: 0.1145 S23: 0.0106 REMARK 3 S31: 0.1582 S32: -0.1537 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 137:173) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1667 9.5289 22.5069 REMARK 3 T TENSOR REMARK 3 T11: 0.5238 T22: 0.4523 REMARK 3 T33: 0.4283 T12: -0.0649 REMARK 3 T13: 0.0236 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.4985 L22: 1.7404 REMARK 3 L33: 2.7620 L12: -0.3220 REMARK 3 L13: 1.6132 L23: 1.5190 REMARK 3 S TENSOR REMARK 3 S11: -0.1994 S12: 0.1581 S13: 0.1461 REMARK 3 S21: -0.0819 S22: 0.2927 S23: 0.1125 REMARK 3 S31: -0.8495 S32: -0.1438 S33: 0.0005 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 178:215) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8965 19.3464 32.2885 REMARK 3 T TENSOR REMARK 3 T11: 0.7363 T22: 0.3989 REMARK 3 T33: 0.4833 T12: 0.0598 REMARK 3 T13: 0.0100 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.2272 L22: 1.7789 REMARK 3 L33: 1.4712 L12: 0.9520 REMARK 3 L13: -0.7580 L23: 0.4774 REMARK 3 S TENSOR REMARK 3 S11: -0.2350 S12: -0.2290 S13: 0.5339 REMARK 3 S21: -0.1318 S22: 0.2628 S23: 0.2817 REMARK 3 S31: -0.9906 S32: -0.1704 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 218:254) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7832 22.2035 43.6955 REMARK 3 T TENSOR REMARK 3 T11: 0.7022 T22: 0.6566 REMARK 3 T33: 0.6325 T12: 0.1327 REMARK 3 T13: 0.0305 T23: -0.1219 REMARK 3 L TENSOR REMARK 3 L11: 1.8019 L22: 1.6560 REMARK 3 L33: 1.5483 L12: 0.6769 REMARK 3 L13: -1.5427 L23: 0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.2863 S12: -0.2636 S13: 0.2297 REMARK 3 S21: -0.3011 S22: 0.2344 S23: 0.5460 REMARK 3 S31: -0.4767 S32: 0.1241 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 258:295) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3174 18.2193 52.5816 REMARK 3 T TENSOR REMARK 3 T11: 0.5633 T22: 0.7352 REMARK 3 T33: 0.7955 T12: 0.1533 REMARK 3 T13: 0.0866 T23: -0.0955 REMARK 3 L TENSOR REMARK 3 L11: 0.9186 L22: 2.1136 REMARK 3 L33: 0.9906 L12: 0.0290 REMARK 3 L13: -0.4132 L23: -0.7337 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.2890 S13: -0.2630 REMARK 3 S21: 0.1634 S22: -0.1481 S23: 1.1381 REMARK 3 S31: -0.0956 S32: -0.8922 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 298:330) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0726 3.9727 55.0864 REMARK 3 T TENSOR REMARK 3 T11: 0.6725 T22: 0.7699 REMARK 3 T33: 0.9002 T12: 0.0886 REMARK 3 T13: 0.1618 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 0.5067 L22: 0.9556 REMARK 3 L33: 0.0413 L12: 0.1674 REMARK 3 L13: 0.0515 L23: 0.1608 REMARK 3 S TENSOR REMARK 3 S11: -0.1638 S12: 0.0978 S13: -0.6509 REMARK 3 S21: 0.4009 S22: -0.1926 S23: 1.1771 REMARK 3 S31: 0.3668 S32: -0.6136 S33: -0.0004 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 333:368) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5182 1.7304 57.3592 REMARK 3 T TENSOR REMARK 3 T11: 0.6740 T22: 0.6335 REMARK 3 T33: 0.4854 T12: 0.1385 REMARK 3 T13: 0.0776 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 2.7724 L22: 1.9990 REMARK 3 L33: 0.6509 L12: 0.3092 REMARK 3 L13: 0.1941 L23: -0.4495 REMARK 3 S TENSOR REMARK 3 S11: -0.2148 S12: -0.2192 S13: -0.0997 REMARK 3 S21: 0.2733 S22: -0.0532 S23: 0.5337 REMARK 3 S31: -0.4696 S32: -0.2655 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ULQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.280 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3Q15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% [W/V] PEG 8,000, 240 MM CALCIUM REMARK 280 ACETATE, 80 MM SODIUM CACODYLATE PH 6.5, AND 20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 57.65200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.71850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.65200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.71850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 VAL A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 4 REMARK 465 ILE A 5 REMARK 465 MET B 125 REMARK 465 GLY B 126 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 SER B 135 REMARK 465 SER B 136 REMARK 465 GLY B 137 REMARK 465 LEU B 138 REMARK 465 VAL B 139 REMARK 465 PRO B 140 REMARK 465 ARG B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 HIS B 144 REMARK 465 MET B 145 REMARK 465 SER B 146 REMARK 465 SER B 147 REMARK 465 GLN B 148 REMARK 465 LYS B 149 REMARK 465 GLU B 150 REMARK 465 GLN B 151 REMARK 465 ASP B 152 REMARK 465 ASP B 211 REMARK 465 GLY B 212 REMARK 465 VAL B 213 REMARK 465 LEU B 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 116 78.65 -100.52 REMARK 500 ASN A 256 55.98 -109.65 REMARK 500 LYS B 209 37.17 -75.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 382 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 40 O REMARK 620 2 MET A 43 O 79.1 REMARK 620 3 GLU A 45 OE1 95.5 70.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 382 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3Q15 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAPH COMPLEXED WITH SPO0F REMARK 900 RELATED ID: 2KRF RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF COMPETENCE REMARK 900 PROTEIN A DBREF 3ULQ A 2 381 UNP P71002 RAPF_BACSU 2 381 DBREF 3ULQ B 146 214 UNP P14204 CMPA_BACSU 146 214 SEQADV 3ULQ GLY A -1 UNP P71002 EXPRESSION TAG SEQADV 3ULQ SER A 0 UNP P71002 EXPRESSION TAG SEQADV 3ULQ VAL A 1 UNP P71002 EXPRESSION TAG SEQADV 3ULQ MET B 125 UNP P14204 EXPRESSION TAG SEQADV 3ULQ GLY B 126 UNP P14204 EXPRESSION TAG SEQADV 3ULQ SER B 127 UNP P14204 EXPRESSION TAG SEQADV 3ULQ SER B 128 UNP P14204 EXPRESSION TAG SEQADV 3ULQ HIS B 129 UNP P14204 EXPRESSION TAG SEQADV 3ULQ HIS B 130 UNP P14204 EXPRESSION TAG SEQADV 3ULQ HIS B 131 UNP P14204 EXPRESSION TAG SEQADV 3ULQ HIS B 132 UNP P14204 EXPRESSION TAG SEQADV 3ULQ HIS B 133 UNP P14204 EXPRESSION TAG SEQADV 3ULQ HIS B 134 UNP P14204 EXPRESSION TAG SEQADV 3ULQ SER B 135 UNP P14204 EXPRESSION TAG SEQADV 3ULQ SER B 136 UNP P14204 EXPRESSION TAG SEQADV 3ULQ GLY B 137 UNP P14204 EXPRESSION TAG SEQADV 3ULQ LEU B 138 UNP P14204 EXPRESSION TAG SEQADV 3ULQ VAL B 139 UNP P14204 EXPRESSION TAG SEQADV 3ULQ PRO B 140 UNP P14204 EXPRESSION TAG SEQADV 3ULQ ARG B 141 UNP P14204 EXPRESSION TAG SEQADV 3ULQ GLY B 142 UNP P14204 EXPRESSION TAG SEQADV 3ULQ SER B 143 UNP P14204 EXPRESSION TAG SEQADV 3ULQ HIS B 144 UNP P14204 EXPRESSION TAG SEQADV 3ULQ MET B 145 UNP P14204 EXPRESSION TAG SEQRES 1 A 383 GLY SER VAL THR GLY VAL ILE SER SER SER SER ILE GLY SEQRES 2 A 383 GLU LYS ILE ASN GLU TRP TYR MET TYR ILE ARG ARG PHE SEQRES 3 A 383 SER ILE PRO ASP ALA GLU TYR LEU ARG ARG GLU ILE LYS SEQRES 4 A 383 GLN GLU LEU ASP GLN MET GLU GLU ASP GLN ASP LEU HIS SEQRES 5 A 383 LEU TYR TYR SER LEU MET GLU PHE ARG HIS ASN LEU MET SEQRES 6 A 383 LEU GLU TYR LEU GLU PRO LEU GLU LYS MET ARG ILE GLU SEQRES 7 A 383 GLU GLN PRO ARG LEU SER ASP LEU LEU LEU GLU ILE ASP SEQRES 8 A 383 LYS LYS GLN ALA ARG LEU THR GLY LEU LEU GLU TYR TYR SEQRES 9 A 383 PHE ASN PHE PHE ARG GLY MET TYR GLU LEU ASP GLN ARG SEQRES 10 A 383 GLU TYR LEU SER ALA ILE LYS PHE PHE LYS LYS ALA GLU SEQRES 11 A 383 SER LYS LEU ILE PHE VAL LYS ASP ARG ILE GLU LYS ALA SEQRES 12 A 383 GLU PHE PHE PHE LYS MET SER GLU SER TYR TYR TYR MET SEQRES 13 A 383 LYS GLN THR TYR PHE SER MET ASP TYR ALA ARG GLN ALA SEQRES 14 A 383 TYR GLU ILE TYR LYS GLU HIS GLU ALA TYR ASN ILE ARG SEQRES 15 A 383 LEU LEU GLN CYS HIS SER LEU PHE ALA THR ASN PHE LEU SEQRES 16 A 383 ASP LEU LYS GLN TYR GLU ASP ALA ILE SER HIS PHE GLN SEQRES 17 A 383 LYS ALA TYR SER MET ALA GLU ALA GLU LYS GLN PRO GLN SEQRES 18 A 383 LEU MET GLY ARG THR LEU TYR ASN ILE GLY LEU CYS LYS SEQRES 19 A 383 ASN SER GLN SER GLN TYR GLU ASP ALA ILE PRO TYR PHE SEQRES 20 A 383 LYS ARG ALA ILE ALA VAL PHE GLU GLU SER ASN ILE LEU SEQRES 21 A 383 PRO SER LEU PRO GLN ALA TYR PHE LEU ILE THR GLN ILE SEQRES 22 A 383 HIS TYR LYS LEU GLY LYS ILE ASP LYS ALA HIS GLU TYR SEQRES 23 A 383 HIS SER LYS GLY MET ALA TYR SER GLN LYS ALA GLY ASP SEQRES 24 A 383 VAL ILE TYR LEU SER GLU PHE GLU PHE LEU LYS SER LEU SEQRES 25 A 383 TYR LEU SER GLY PRO ASP GLU GLU ALA ILE GLN GLY PHE SEQRES 26 A 383 PHE ASP PHE LEU GLU SER LYS MET LEU TYR ALA ASP LEU SEQRES 27 A 383 GLU ASP PHE ALA ILE ASP VAL ALA LYS TYR TYR HIS GLU SEQRES 28 A 383 ARG LYS ASN PHE GLN LYS ALA SER ALA TYR PHE LEU LYS SEQRES 29 A 383 VAL GLU GLN VAL ARG GLN LEU ILE GLN GLY GLY VAL SER SEQRES 30 A 383 LEU TYR GLU ILE GLU VAL SEQRES 1 B 90 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 90 LEU VAL PRO ARG GLY SER HIS MET SER SER GLN LYS GLU SEQRES 3 B 90 GLN ASP VAL LEU THR PRO ARG GLU CYS LEU ILE LEU GLN SEQRES 4 B 90 GLU VAL GLU LYS GLY PHE THR ASN GLN GLU ILE ALA ASP SEQRES 5 B 90 ALA LEU HIS LEU SER LYS ARG SER ILE GLU TYR SER LEU SEQRES 6 B 90 THR SER ILE PHE ASN LYS LEU ASN VAL GLY SER ARG THR SEQRES 7 B 90 GLU ALA VAL LEU ILE ALA LYS SER ASP GLY VAL LEU HET MN A 382 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN MN 2+ FORMUL 4 HOH *90(H2 O) HELIX 1 1 SER A 6 ARG A 23 1 18 HELIX 2 2 SER A 25 GLN A 42 1 18 HELIX 3 3 ASP A 46 GLU A 68 1 23 HELIX 4 4 PRO A 69 MET A 73 5 5 HELIX 5 5 ARG A 74 GLN A 78 5 5 HELIX 6 6 ARG A 80 GLN A 92 1 13 HELIX 7 7 GLN A 92 GLN A 114 1 23 HELIX 8 8 GLU A 116 SER A 129 1 14 HELIX 9 9 LYS A 130 VAL A 134 5 5 HELIX 10 10 ASP A 136 MET A 154 1 19 HELIX 11 11 GLN A 156 GLU A 173 1 18 HELIX 12 12 TYR A 177 LEU A 195 1 19 HELIX 13 13 GLN A 197 GLU A 215 1 19 HELIX 14 14 GLN A 217 GLN A 235 1 19 HELIX 15 15 GLN A 237 SER A 255 1 19 HELIX 16 16 ILE A 257 PRO A 259 5 3 HELIX 17 17 SER A 260 LEU A 275 1 16 HELIX 18 18 LYS A 277 GLY A 296 1 20 HELIX 19 19 ASP A 297 LEU A 312 1 16 HELIX 20 20 ASP A 316 LYS A 330 1 15 HELIX 21 21 LEU A 332 ARG A 350 1 19 HELIX 22 22 ASN A 352 GLN A 368 1 17 HELIX 23 23 THR B 155 LYS B 167 1 13 HELIX 24 24 THR B 170 HIS B 179 1 10 HELIX 25 25 SER B 181 LEU B 196 1 16 HELIX 26 26 SER B 200 LYS B 209 1 10 LINK O LEU A 40 MN MN A 382 1555 1555 2.33 LINK O MET A 43 MN MN A 382 1555 1555 2.26 LINK OE1 GLU A 45 MN MN A 382 1555 1555 2.26 CISPEP 1 GLY A 314 PRO A 315 0 1.26 SITE 1 AC1 3 LEU A 40 MET A 43 GLU A 45 CRYST1 115.304 81.437 78.346 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012764 0.00000