HEADER MEMBRANE PROTEIN/TRANSPORT PROTEIN 11-NOV-11 3ULY TITLE CRYSTAL STRUCTURE OF BROX BRO1 DOMAIN IN COMPLEX WITH THE C-TERMINAL TITLE 2 TAILS OF CHMP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRO1 DOMAIN-CONTAINING PROTEIN BROX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BROX BRO1 DOMAIN 2-411; COMPND 5 SYNONYM: BRO1 DOMAIN- AND CAAX MOTIF-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CHARGED MULTIVESICULAR BODY PROTEIN 5; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: C-TERMINAL TAILS OF CHMP5 151-219; COMPND 11 SYNONYM: CHROMATIN-MODIFYING PROTEIN 5, SNF7 DOMAIN-CONTAINING COMPND 12 PROTEIN 2, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 60, VPS60, COMPND 13 HVPS60; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BROFTI, BROX, C1ORF58; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: C9ORF83, CGI-34, CHMP5, HSPC177, PNAS-114, PNAS-2, SNF7DC2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS BETA-HAIRPIN, ESCRT-III, CHMPS, MEMBRANE PROTEIN-TRANSPORT PROTEIN KEYWDS 2 COMPLEX, BROX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.JIANG,R.L.MU,T.XIAO REVDAT 3 13-SEP-23 3ULY 1 REMARK REVDAT 2 23-MAY-12 3ULY 1 JRNL REVDAT 1 18-APR-12 3ULY 0 JRNL AUTH R.MU,V.DUSSUPT,J.JIANG,P.SETTE,V.RUDD,W.CHUENCHOR,N.F.BELLO, JRNL AUTH 2 F.BOUAMR,T.S.XIAO JRNL TITL TWO DISTINCT BINDING MODES DEFINE THE INTERACTION OF BROX JRNL TITL 2 WITH THE C-TERMINAL TAILS OF CHMP5 AND CHMP4B. JRNL REF STRUCTURE V. 20 887 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22484091 JRNL DOI 10.1016/J.STR.2012.03.001 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 14719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7232 - 4.4474 0.99 3164 164 0.1647 0.2006 REMARK 3 2 4.4474 - 3.5306 0.98 3038 176 0.1336 0.1655 REMARK 3 3 3.5306 - 3.0845 0.96 2921 161 0.1691 0.2649 REMARK 3 4 3.0845 - 2.8025 0.86 2678 134 0.2068 0.2417 REMARK 3 5 2.8025 - 2.6017 0.71 2176 107 0.2399 0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 59.61 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.36220 REMARK 3 B22 (A**2) : 2.15940 REMARK 3 B33 (A**2) : -16.52160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.39960 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3321 REMARK 3 ANGLE : 0.969 4491 REMARK 3 CHIRALITY : 0.069 488 REMARK 3 PLANARITY : 0.005 576 REMARK 3 DIHEDRAL : 14.768 1239 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.2706 -10.4393 3.5971 REMARK 3 T TENSOR REMARK 3 T11: 0.1747 T22: 0.1624 REMARK 3 T33: 0.1721 T12: 0.0519 REMARK 3 T13: 0.0315 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.0097 L22: 0.6402 REMARK 3 L33: 1.7986 L12: 0.4577 REMARK 3 L13: 0.6139 L23: 0.6753 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.2373 S13: -0.0216 REMARK 3 S21: -0.1918 S22: 0.0829 S23: -0.0310 REMARK 3 S31: -0.3048 S32: -0.0407 S33: -0.0118 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ULY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15918 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3R9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M MAGNESIUM ACETATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.18850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.01650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.18850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.01650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 17.18847 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.36730 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 380 REMARK 465 ASP A 381 REMARK 465 ASP A 382 REMARK 465 SER A 383 REMARK 465 VAL A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 PRO A 398 REMARK 465 ASP A 399 REMARK 465 ILE A 400 REMARK 465 LYS A 401 REMARK 465 PRO A 402 REMARK 465 GLN A 403 REMARK 465 LYS A 404 REMARK 465 ASP A 405 REMARK 465 THR A 406 REMARK 465 GLY A 407 REMARK 465 CYS A 408 REMARK 465 TYR A 409 REMARK 465 ILE A 410 REMARK 465 SER A 411 REMARK 465 ARG B 151 REMARK 465 SER B 152 REMARK 465 TYR B 153 REMARK 465 GLY B 154 REMARK 465 THR B 155 REMARK 465 PRO B 156 REMARK 465 GLU B 157 REMARK 465 LEU B 158 REMARK 465 ASP B 159 REMARK 465 GLU B 160 REMARK 465 ASP B 161 REMARK 465 ASP B 162 REMARK 465 LEU B 163 REMARK 465 GLU B 164 REMARK 465 ALA B 165 REMARK 465 GLU B 166 REMARK 465 LEU B 167 REMARK 465 ASP B 168 REMARK 465 ALA B 169 REMARK 465 LEU B 170 REMARK 465 GLY B 171 REMARK 465 ASP B 172 REMARK 465 GLU B 173 REMARK 465 LEU B 174 REMARK 465 LEU B 175 REMARK 465 ALA B 176 REMARK 465 ASP B 177 REMARK 465 GLU B 178 REMARK 465 ASP B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 TYR B 182 REMARK 465 LEU B 183 REMARK 465 ASP B 184 REMARK 465 GLU B 185 REMARK 465 ALA B 186 REMARK 465 ALA B 187 REMARK 465 SER B 188 REMARK 465 ALA B 189 REMARK 465 PRO B 190 REMARK 465 ALA B 191 REMARK 465 ILE B 192 REMARK 465 PRO B 193 REMARK 465 GLU B 194 REMARK 465 GLY B 195 REMARK 465 VAL B 196 REMARK 465 PRO B 197 REMARK 465 THR B 198 REMARK 465 ASP B 199 REMARK 465 PRO B 217 REMARK 465 ALA B 218 REMARK 465 SER B 219 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 GLY A 305 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 37 CZ NH1 NH2 REMARK 480 GLU A 55 CD OE1 OE2 REMARK 480 GLU A 77 N O REMARK 480 GLN A 99 CD OE1 NE2 REMARK 480 LYS A 171 CB CG CD CE NZ REMARK 480 GLU A 231 CG CD OE1 OE2 REMARK 480 GLU A 290 OE1 OE2 REMARK 480 GLU A 293 CG CD OE1 OE2 REMARK 480 LYS A 295 CG CD CE NZ REMARK 480 SER A 304 CA C O CB OG REMARK 480 HIS A 306 CB CG ND1 CD2 CE1 NE2 REMARK 480 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 325 NH1 NH2 REMARK 480 GLN A 341 CD OE1 NE2 REMARK 480 GLU A 343 CD OE1 OE2 REMARK 480 THR A 384 CB OG1 CG2 REMARK 480 LYS A 385 CG CD CE NZ REMARK 480 LYS A 387 CB CG CD CE NZ REMARK 480 GLU A 389 CG CD OE1 OE2 REMARK 480 GLU A 390 OE2 REMARK 480 GLU A 391 O CG CD OE1 OE2 REMARK 480 VAL A 392 CB CG1 CG2 REMARK 480 LYS B 203 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 21 -127.28 61.71 REMARK 500 LEU A 75 -75.53 -57.12 REMARK 500 THR A 79 -6.52 92.81 REMARK 500 HIS A 161 -58.91 -128.49 REMARK 500 CYS A 267 -60.63 -93.89 REMARK 500 GLU A 326 -61.18 -138.03 REMARK 500 TYR A 331 73.41 44.29 REMARK 500 VAL A 392 78.65 57.65 REMARK 500 LYS A 393 -120.33 -95.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 78 THR A 79 -146.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R9M RELATED DB: PDB REMARK 900 RELATED ID: 3UM0 RELATED DB: PDB REMARK 900 RELATED ID: 3UM1 RELATED DB: PDB REMARK 900 RELATED ID: 3UM2 RELATED DB: PDB REMARK 900 RELATED ID: 3UM3 RELATED DB: PDB DBREF 3ULY A 2 408 UNP Q5VW32 BROX_HUMAN 2 411 DBREF 3ULY B 151 219 UNP Q9NZZ3 CHMP5_HUMAN 151 219 SEQRES 1 A 410 THR HIS TRP PHE HIS ARG ASN PRO LEU LYS ALA THR ALA SEQRES 2 A 410 PRO VAL SER PHE ASN TYR TYR GLY VAL VAL THR GLY PRO SEQRES 3 A 410 SER ALA SER LYS ILE CYS ASN ASP LEU ARG SER SER ARG SEQRES 4 A 410 ALA ARG LEU LEU GLU LEU PHE THR ASP LEU SER CYS ASN SEQRES 5 A 410 PRO GLU MET MET LYS ASN ALA ALA ASP SER TYR PHE SER SEQRES 6 A 410 LEU LEU GLN GLY PHE ILE ASN SER LEU ASP GLU SER THR SEQRES 7 A 410 GLN GLU SER LYS LEU ARG TYR ILE GLN ASN PHE LYS TRP SEQRES 8 A 410 THR ASP THR LEU GLN GLY GLN VAL PRO SER ALA GLN GLN SEQRES 9 A 410 ASP ALA VAL PHE GLU LEU ILE SER MET GLY PHE ASN VAL SEQRES 10 A 410 ALA LEU TRP TYR THR LYS TYR ALA SER ARG LEU ALA GLY SEQRES 11 A 410 LYS GLU ASN ILE THR GLU ASP GLU ALA LYS GLU VAL HIS SEQRES 12 A 410 ARG SER LEU LYS ILE ALA ALA GLY ILE PHE LYS HIS LEU SEQRES 13 A 410 LYS GLU SER HIS LEU PRO LYS LEU ILE THR PRO ALA GLU SEQRES 14 A 410 LYS GLY ARG ASP LEU GLU SER ARG LEU ILE GLU ALA TYR SEQRES 15 A 410 VAL ILE GLN CYS GLN ALA GLU ALA GLN GLU VAL THR ILE SEQRES 16 A 410 ALA ARG ALA ILE GLU LEU LYS HIS ALA PRO GLY LEU ILE SEQRES 17 A 410 ALA ALA LEU ALA TYR GLU THR ALA ASN PHE TYR GLN LYS SEQRES 18 A 410 ALA ASP HIS THR LEU SER SER LEU GLU PRO ALA TYR SER SEQRES 19 A 410 ALA LYS TRP ARG LYS TYR LEU HIS LEU LYS MET CYS PHE SEQRES 20 A 410 TYR THR ALA TYR ALA TYR CYS TYR HIS GLY GLU THR LEU SEQRES 21 A 410 LEU ALA SER ASP LYS CYS GLY GLU ALA ILE ARG SER LEU SEQRES 22 A 410 GLN GLU ALA GLU LYS LEU TYR ALA LYS ALA GLU ALA LEU SEQRES 23 A 410 CYS LYS GLU TYR GLY GLU THR LYS GLY PRO GLY PRO THR SEQRES 24 A 410 VAL LYS PRO SER GLY HIS LEU PHE PHE ARG LYS LEU GLY SEQRES 25 A 410 ASN LEU VAL LYS ASN THR LEU GLU LYS CYS GLN ARG GLU SEQRES 26 A 410 ASN GLY PHE ILE TYR PHE GLN LYS ILE PRO THR GLU ALA SEQRES 27 A 410 PRO GLN LEU GLU LEU LYS ALA ASN TYR GLY LEU VAL GLU SEQRES 28 A 410 PRO ILE PRO PHE GLU PHE PRO PRO THR SER VAL GLN TRP SEQRES 29 A 410 THR PRO GLU THR LEU ALA ALA PHE ASP LEU THR LYS ARG SEQRES 30 A 410 PRO LYS ASP ASP SER THR LYS PRO LYS PRO GLU GLU GLU SEQRES 31 A 410 VAL LYS PRO VAL LYS GLU PRO ASP ILE LYS PRO GLN LYS SEQRES 32 A 410 ASP THR GLY CYS TYR ILE SER SEQRES 1 B 69 ARG SER TYR GLY THR PRO GLU LEU ASP GLU ASP ASP LEU SEQRES 2 B 69 GLU ALA GLU LEU ASP ALA LEU GLY ASP GLU LEU LEU ALA SEQRES 3 B 69 ASP GLU ASP SER SER TYR LEU ASP GLU ALA ALA SER ALA SEQRES 4 B 69 PRO ALA ILE PRO GLU GLY VAL PRO THR ASP THR LYS ASN SEQRES 5 B 69 LYS ASP GLY VAL LEU VAL ASP GLU PHE GLY LEU PRO GLN SEQRES 6 B 69 ILE PRO ALA SER HET GOL A 412 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *84(H2 O) HELIX 1 1 TYR A 20 VAL A 24 5 5 HELIX 2 2 GLY A 26 PHE A 47 1 22 HELIX 3 3 ASN A 53 GLN A 69 1 17 HELIX 4 4 GLY A 70 ILE A 72 5 3 HELIX 5 5 ASP A 106 GLY A 131 1 26 HELIX 6 6 THR A 136 HIS A 161 1 26 HELIX 7 7 LEU A 162 LEU A 165 5 4 HELIX 8 8 GLU A 176 LEU A 202 1 27 HELIX 9 9 ALA A 205 SER A 229 1 25 HELIX 10 10 GLU A 231 SER A 264 1 34 HELIX 11 11 CYS A 267 THR A 294 1 28 HELIX 12 12 HIS A 306 GLN A 324 1 19 HELIX 13 13 THR A 366 ALA A 372 1 7 HELIX 14 14 ASP A 374 ARG A 378 5 5 SHEET 1 A 2 PHE A 90 TRP A 92 0 SHEET 2 A 2 SER A 102 GLN A 104 -1 O GLN A 104 N PHE A 90 SSBOND 1 CYS A 267 CYS A 323 1555 1555 2.03 CISPEP 1 GLY A 328 PHE A 329 0 24.17 CISPEP 2 GLN A 333 LYS A 334 0 -1.82 SITE 1 AC1 5 LYS A 58 ASP A 62 GLU A 357 ASP A 374 SITE 2 AC1 5 THR A 376 CRYST1 172.377 46.033 68.557 90.00 104.52 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005801 0.000000 0.001502 0.00000 SCALE2 0.000000 0.021724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015068 0.00000