HEADER TRANSFERASE 14-NOV-11 3UMP TITLE CRYSTAL STRUCTURE OF THE PHOSPHOFRUCTOKINASE-2 FROM ESCHERICHIA COLI TITLE 2 IN COMPLEX WITH CESIUM AND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOFRUCTOKINASE ISOZYME 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHOFRUCTOKINASE-2; COMPND 5 EC: 2.7.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B1723, JW5280, PFK2, PFKB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21-D KEYWDS PFK-2, GLYCOLYSIS, TRANSFERASE, ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR H.M.PEREIRA,A.CANIUGUIR,M.BAEZ,R.CABRERA,R.C.GARRATT,J.BABUL REVDAT 3 28-FEB-24 3UMP 1 REMARK LINK REVDAT 2 24-JUL-13 3UMP 1 JRNL REVDAT 1 14-NOV-12 3UMP 0 JRNL AUTH M.BAEZ,R.CABRERA,H.M.PEREIRA,A.BLANCO,P.VILLALOBOS, JRNL AUTH 2 C.A.RAMIREZ-SARMIENTO,A.CANIUGUIR,V.GUIXE,R.C.GARRATT, JRNL AUTH 3 J.BABUL JRNL TITL A RIBOKINASE FAMILY CONSERVED MONOVALENT CATION BINDING SITE JRNL TITL 2 ENHANCES THE MGATP-INDUCED INHIBITION IN E. COLI JRNL TITL 3 PHOSPHOFRUCTOKINASE-2 JRNL REF BIOPHYS.J. V. 105 185 2013 JRNL REFN ISSN 0006-3495 JRNL PMID 23823238 JRNL DOI 10.1016/J.BPJ.2013.05.028 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 109841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0636 - 5.7437 0.93 3378 177 0.1608 0.1564 REMARK 3 2 5.7437 - 4.5600 0.93 3345 178 0.1511 0.1753 REMARK 3 3 4.5600 - 3.9839 0.92 3303 173 0.1327 0.1785 REMARK 3 4 3.9839 - 3.6197 0.94 3403 178 0.1512 0.1745 REMARK 3 5 3.6197 - 3.3604 0.95 3416 177 0.1712 0.2104 REMARK 3 6 3.3604 - 3.1623 0.95 3436 183 0.1732 0.2180 REMARK 3 7 3.1623 - 3.0039 0.93 3381 172 0.1727 0.2174 REMARK 3 8 3.0039 - 2.8732 0.96 3479 179 0.1673 0.1944 REMARK 3 9 2.8732 - 2.7626 0.97 3444 185 0.1672 0.1883 REMARK 3 10 2.7626 - 2.6673 0.97 3517 188 0.1800 0.2744 REMARK 3 11 2.6673 - 2.5839 0.97 3474 185 0.1797 0.2342 REMARK 3 12 2.5839 - 2.5100 0.98 3571 187 0.1835 0.2485 REMARK 3 13 2.5100 - 2.4439 0.97 3445 180 0.1717 0.2162 REMARK 3 14 2.4439 - 2.3843 0.97 3535 186 0.1830 0.2293 REMARK 3 15 2.3843 - 2.3301 0.97 3499 184 0.1795 0.2034 REMARK 3 16 2.3301 - 2.2805 0.98 3514 183 0.1726 0.2124 REMARK 3 17 2.2805 - 2.2349 0.98 3511 183 0.1754 0.2281 REMARK 3 18 2.2349 - 2.1927 0.98 3517 179 0.1628 0.2046 REMARK 3 19 2.1927 - 2.1536 0.98 3554 188 0.1730 0.2068 REMARK 3 20 2.1536 - 2.1171 0.98 3544 184 0.1828 0.2102 REMARK 3 21 2.1171 - 2.0829 0.98 3521 187 0.1926 0.2747 REMARK 3 22 2.0829 - 2.0509 0.98 3623 191 0.2012 0.2525 REMARK 3 23 2.0509 - 2.0207 0.98 3495 187 0.2047 0.2872 REMARK 3 24 2.0207 - 1.9922 0.98 3513 189 0.2220 0.2693 REMARK 3 25 1.9922 - 1.9653 0.98 3603 188 0.2231 0.2528 REMARK 3 26 1.9653 - 1.9398 0.98 3512 181 0.2318 0.2842 REMARK 3 27 1.9398 - 1.9155 0.98 3518 183 0.2404 0.2835 REMARK 3 28 1.9155 - 1.8925 0.98 3484 182 0.2633 0.2912 REMARK 3 29 1.8925 - 1.8705 0.98 3574 187 0.2601 0.2897 REMARK 3 30 1.8705 - 1.8490 0.89 3261 167 0.2743 0.3089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 27.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.74340 REMARK 3 B22 (A**2) : 2.66970 REMARK 3 B33 (A**2) : 0.07370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4824 REMARK 3 ANGLE : 1.369 6603 REMARK 3 CHIRALITY : 0.071 777 REMARK 3 PLANARITY : 0.005 836 REMARK 3 DIHEDRAL : 21.073 1795 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FRIEDEL PAIRS WERE USED FOR REFINEMENT REMARK 4 REMARK 4 3UMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000068946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97627 REMARK 200 MONOCHROMATOR : SI(311) AND SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.849 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG 4000, 0.1 M SODIUM ACETATE PH REMARK 280 4.75, 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.20250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.20250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 88.91400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 359 O HOH B 491 2.18 REMARK 500 OD2 ASP A 234 O HOH A 497 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 25 -54.79 79.74 REMARK 500 GLU B 25 -50.55 79.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 315 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 250 O REMARK 620 2 VAL A 252 O 88.0 REMARK 620 3 ALA A 286 O 77.5 101.5 REMARK 620 4 ASN A 289 O 75.7 163.0 80.2 REMARK 620 5 GLY A 291 O 104.2 89.4 169.1 89.8 REMARK 620 6 ARG A 293 O 151.1 85.6 76.2 111.1 103.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 313 O2B REMARK 620 2 ATP A 313 O1G 95.3 REMARK 620 3 HOH A 534 O 84.0 179.3 REMARK 620 4 HOH A 535 O 97.3 91.1 88.8 REMARK 620 5 HOH A 536 O 174.7 88.9 91.8 85.9 REMARK 620 6 HOH B 533 O 91.4 93.5 86.7 169.8 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 313 O1B REMARK 620 2 ATP A 313 O3G 97.6 REMARK 620 3 HOH A 530 O 91.4 86.3 REMARK 620 4 HOH A 532 O 85.7 170.2 84.4 REMARK 620 5 ATP B 312 O3G 93.5 95.7 174.4 93.3 REMARK 620 6 ATP B 312 O1G 92.1 95.5 175.8 93.6 1.4 REMARK 620 7 ATP B 312 O1B 176.0 86.3 87.8 90.3 87.1 88.5 REMARK 620 8 ATP B 312 O2B 176.3 84.8 86.0 91.5 89.0 90.4 2.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 314 O3G REMARK 620 2 ATP A 314 O1G 0.9 REMARK 620 3 ATP A 314 O1B 85.2 85.7 REMARK 620 4 ATP A 314 O2B 85.7 86.3 2.6 REMARK 620 5 HOH A 545 O 93.3 94.1 90.9 93.4 REMARK 620 6 ATP B 313 O1B 92.8 92.3 176.8 178.5 86.7 REMARK 620 7 ATP B 313 O3G 93.1 92.3 88.6 86.0 173.5 94.0 REMARK 620 8 HOH B 527 O 175.7 175.9 90.7 90.1 87.9 91.4 85.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 311 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 543 O REMARK 620 2 ATP B 313 O2B 92.6 REMARK 620 3 ATP B 313 O1G 85.1 94.1 REMARK 620 4 HOH B 317 O 162.8 103.7 88.2 REMARK 620 5 HOH B 448 O 77.0 168.2 79.4 86.2 REMARK 620 6 HOH B 542 O 89.1 92.0 171.7 95.7 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS B 315 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 250 O REMARK 620 2 VAL B 252 O 88.9 REMARK 620 3 ALA B 286 O 76.2 102.7 REMARK 620 4 ASN B 289 O 77.8 166.0 78.6 REMARK 620 5 GLY B 291 O 105.1 90.4 166.9 88.9 REMARK 620 6 ARG B 293 O 150.0 85.9 76.1 107.8 104.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS B 315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CQD RELATED DB: PDB REMARK 900 RELATED ID: 3UMO RELATED DB: PDB DBREF 3UMP A 1 309 UNP P06999 K6PF2_ECOLI 1 309 DBREF 3UMP B 1 309 UNP P06999 K6PF2_ECOLI 1 309 SEQRES 1 A 309 MET VAL ARG ILE TYR THR LEU THR LEU ALA PRO SER LEU SEQRES 2 A 309 ASP SER ALA THR ILE THR PRO GLN ILE TYR PRO GLU GLY SEQRES 3 A 309 LYS LEU ARG CYS THR ALA PRO VAL PHE GLU PRO GLY GLY SEQRES 4 A 309 GLY GLY ILE ASN VAL ALA ARG ALA ILE ALA HIS LEU GLY SEQRES 5 A 309 GLY SER ALA THR ALA ILE PHE PRO ALA GLY GLY ALA THR SEQRES 6 A 309 GLY GLU HIS LEU VAL SER LEU LEU ALA ASP GLU ASN VAL SEQRES 7 A 309 PRO VAL ALA THR VAL GLU ALA LYS ASP TRP THR ARG GLN SEQRES 8 A 309 ASN LEU HIS VAL HIS VAL GLU ALA SER GLY GLU GLN TYR SEQRES 9 A 309 ARG PHE VAL MET PRO GLY ALA ALA LEU ASN GLU ASP GLU SEQRES 10 A 309 PHE ARG GLN LEU GLU GLU GLN VAL LEU GLU ILE GLU SER SEQRES 11 A 309 GLY ALA ILE LEU VAL ILE SER GLY SER LEU PRO PRO GLY SEQRES 12 A 309 VAL LYS LEU GLU LYS LEU THR GLN LEU ILE SER ALA ALA SEQRES 13 A 309 GLN LYS GLN GLY ILE ARG CYS ILE VAL ASP SER SER GLY SEQRES 14 A 309 GLU ALA LEU SER ALA ALA LEU ALA ILE GLY ASN ILE GLU SEQRES 15 A 309 LEU VAL LYS PRO ASN GLN LYS GLU LEU SER ALA LEU VAL SEQRES 16 A 309 ASN ARG GLU LEU THR GLN PRO ASP ASP VAL ARG LYS ALA SEQRES 17 A 309 ALA GLN GLU ILE VAL ASN SER GLY LYS ALA LYS ARG VAL SEQRES 18 A 309 VAL VAL SER LEU GLY PRO GLN GLY ALA LEU GLY VAL ASP SEQRES 19 A 309 SER GLU ASN CYS ILE GLN VAL VAL PRO PRO PRO VAL LYS SEQRES 20 A 309 SER GLN SER THR VAL GLY ALA GLY ASP SER MET VAL GLY SEQRES 21 A 309 ALA MET THR LEU LYS LEU ALA GLU ASN ALA SER LEU GLU SEQRES 22 A 309 GLU MET VAL ARG PHE GLY VAL ALA ALA GLY SER ALA ALA SEQRES 23 A 309 THR LEU ASN GLN GLY THR ARG LEU CYS SER HIS ASP ASP SEQRES 24 A 309 THR GLN LYS ILE TYR ALA TYR LEU SER ARG SEQRES 1 B 309 MET VAL ARG ILE TYR THR LEU THR LEU ALA PRO SER LEU SEQRES 2 B 309 ASP SER ALA THR ILE THR PRO GLN ILE TYR PRO GLU GLY SEQRES 3 B 309 LYS LEU ARG CYS THR ALA PRO VAL PHE GLU PRO GLY GLY SEQRES 4 B 309 GLY GLY ILE ASN VAL ALA ARG ALA ILE ALA HIS LEU GLY SEQRES 5 B 309 GLY SER ALA THR ALA ILE PHE PRO ALA GLY GLY ALA THR SEQRES 6 B 309 GLY GLU HIS LEU VAL SER LEU LEU ALA ASP GLU ASN VAL SEQRES 7 B 309 PRO VAL ALA THR VAL GLU ALA LYS ASP TRP THR ARG GLN SEQRES 8 B 309 ASN LEU HIS VAL HIS VAL GLU ALA SER GLY GLU GLN TYR SEQRES 9 B 309 ARG PHE VAL MET PRO GLY ALA ALA LEU ASN GLU ASP GLU SEQRES 10 B 309 PHE ARG GLN LEU GLU GLU GLN VAL LEU GLU ILE GLU SER SEQRES 11 B 309 GLY ALA ILE LEU VAL ILE SER GLY SER LEU PRO PRO GLY SEQRES 12 B 309 VAL LYS LEU GLU LYS LEU THR GLN LEU ILE SER ALA ALA SEQRES 13 B 309 GLN LYS GLN GLY ILE ARG CYS ILE VAL ASP SER SER GLY SEQRES 14 B 309 GLU ALA LEU SER ALA ALA LEU ALA ILE GLY ASN ILE GLU SEQRES 15 B 309 LEU VAL LYS PRO ASN GLN LYS GLU LEU SER ALA LEU VAL SEQRES 16 B 309 ASN ARG GLU LEU THR GLN PRO ASP ASP VAL ARG LYS ALA SEQRES 17 B 309 ALA GLN GLU ILE VAL ASN SER GLY LYS ALA LYS ARG VAL SEQRES 18 B 309 VAL VAL SER LEU GLY PRO GLN GLY ALA LEU GLY VAL ASP SEQRES 19 B 309 SER GLU ASN CYS ILE GLN VAL VAL PRO PRO PRO VAL LYS SEQRES 20 B 309 SER GLN SER THR VAL GLY ALA GLY ASP SER MET VAL GLY SEQRES 21 B 309 ALA MET THR LEU LYS LEU ALA GLU ASN ALA SER LEU GLU SEQRES 22 B 309 GLU MET VAL ARG PHE GLY VAL ALA ALA GLY SER ALA ALA SEQRES 23 B 309 THR LEU ASN GLN GLY THR ARG LEU CYS SER HIS ASP ASP SEQRES 24 B 309 THR GLN LYS ILE TYR ALA TYR LEU SER ARG HET ATP A 313 31 HET MG A 310 1 HET MG A 311 1 HET CS A 315 1 HET MG A 312 1 HET ATP A 314 62 HET ATP B 312 62 HET MG B 311 1 HET ATP B 313 31 HET CS B 315 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CS CESIUM ION FORMUL 3 ATP 4(C10 H16 N5 O13 P3) FORMUL 4 MG 4(MG 2+) FORMUL 6 CS 2(CS 1+) FORMUL 13 HOH *438(H2 O) HELIX 1 1 GLY A 39 LEU A 51 1 13 HELIX 2 2 GLY A 62 GLU A 76 1 15 HELIX 3 3 ASN A 114 GLU A 127 1 14 HELIX 4 4 LYS A 145 GLN A 159 1 15 HELIX 5 5 SER A 168 ALA A 177 1 10 HELIX 6 6 ASN A 187 VAL A 195 1 9 HELIX 7 7 ASP A 203 SER A 215 1 13 HELIX 8 8 GLY A 226 GLN A 228 5 3 HELIX 9 9 GLY A 253 GLU A 268 1 16 HELIX 10 10 SER A 271 LEU A 288 1 18 HELIX 11 11 SER A 296 ARG A 309 1 14 HELIX 12 12 GLY B 39 LEU B 51 1 13 HELIX 13 13 GLY B 62 GLU B 76 1 15 HELIX 14 14 ASN B 114 LEU B 126 1 13 HELIX 15 15 LYS B 145 GLN B 159 1 15 HELIX 16 16 SER B 168 LEU B 176 1 9 HELIX 17 17 ASN B 187 VAL B 195 1 9 HELIX 18 18 ASP B 203 SER B 215 1 13 HELIX 19 19 GLY B 226 GLN B 228 5 3 HELIX 20 20 GLY B 253 GLU B 268 1 16 HELIX 21 21 SER B 271 LEU B 288 1 18 HELIX 22 22 SER B 296 SER B 308 1 13 SHEET 1 A 6 VAL A 80 GLU A 84 0 SHEET 2 A 6 ALA A 55 ALA A 61 1 N ALA A 61 O VAL A 83 SHEET 3 A 6 ILE A 4 LEU A 7 1 N THR A 6 O ILE A 58 SHEET 4 A 6 ILE A 133 SER A 137 1 O VAL A 135 N LEU A 7 SHEET 5 A 6 ARG A 162 ASP A 166 1 O ILE A 164 N ILE A 136 SHEET 6 A 6 LEU A 183 VAL A 184 1 O LEU A 183 N VAL A 165 SHEET 1 B 5 VAL A 34 GLY A 38 0 SHEET 2 B 5 SER A 12 THR A 19 -1 N ASP A 14 O GLU A 36 SHEET 3 B 5 LEU A 93 VAL A 97 1 O HIS A 94 N SER A 15 SHEET 4 B 5 GLN A 103 VAL A 107 -1 O TYR A 104 N VAL A 95 SHEET 5 B 5 LYS B 27 ARG B 29 1 O LEU B 28 N VAL A 107 SHEET 1 C 5 LYS A 27 ARG A 29 0 SHEET 2 C 5 GLN B 103 VAL B 107 1 O ARG B 105 N LEU A 28 SHEET 3 C 5 LEU B 93 VAL B 97 -1 N VAL B 95 O TYR B 104 SHEET 4 C 5 SER B 12 THR B 19 1 N SER B 15 O HIS B 94 SHEET 5 C 5 VAL B 34 GLY B 38 -1 O VAL B 34 N ALA B 16 SHEET 1 D 3 VAL A 221 SER A 224 0 SHEET 2 D 3 ALA A 230 VAL A 233 -1 O LEU A 231 N VAL A 223 SHEET 3 D 3 CYS A 238 VAL A 241 -1 O ILE A 239 N GLY A 232 SHEET 1 E 6 VAL B 80 GLU B 84 0 SHEET 2 E 6 THR B 56 ALA B 61 1 N ALA B 61 O VAL B 83 SHEET 3 E 6 ILE B 4 LEU B 7 1 N THR B 6 O ILE B 58 SHEET 4 E 6 ILE B 133 SER B 137 1 O VAL B 135 N LEU B 7 SHEET 5 E 6 ARG B 162 ASP B 166 1 O ILE B 164 N ILE B 136 SHEET 6 E 6 LEU B 183 VAL B 184 1 O LEU B 183 N VAL B 165 SHEET 1 F 3 VAL B 221 SER B 224 0 SHEET 2 F 3 ALA B 230 VAL B 233 -1 O LEU B 231 N VAL B 223 SHEET 3 F 3 CYS B 238 VAL B 241 -1 O ILE B 239 N GLY B 232 LINK O SER A 250 CS CS A 315 1555 1555 3.22 LINK O VAL A 252 CS CS A 315 1555 1555 2.97 LINK O ALA A 286 CS CS A 315 1555 1555 2.97 LINK O ASN A 289 CS CS A 315 1555 1555 3.01 LINK O GLY A 291 CS CS A 315 1555 1555 3.02 LINK O ARG A 293 CS CS A 315 1555 1555 3.07 LINK MG MG A 310 O2B ATP A 313 1555 1555 1.99 LINK MG MG A 310 O1G ATP A 313 1555 1555 2.11 LINK MG MG A 310 O HOH A 534 1555 1555 2.27 LINK MG MG A 310 O HOH A 535 1555 1555 2.15 LINK MG MG A 310 O HOH A 536 1555 1555 2.19 LINK MG MG A 310 O HOH B 533 1555 1555 2.36 LINK MG MG A 311 O1B ATP A 313 1555 1555 1.99 LINK MG MG A 311 O3G ATP A 313 1555 1555 2.10 LINK MG MG A 311 O HOH A 530 1555 1555 2.28 LINK MG MG A 311 O HOH A 532 1555 1555 2.10 LINK MG MG A 311 O3GBATP B 312 1555 1555 2.00 LINK MG MG A 311 O1GAATP B 312 1555 1555 2.15 LINK MG MG A 311 O1BBATP B 312 1555 1555 2.23 LINK MG MG A 311 O2BAATP B 312 1555 1555 2.25 LINK MG MG A 312 O3GBATP A 314 1555 1555 1.94 LINK MG MG A 312 O1GAATP A 314 1555 1555 2.09 LINK MG MG A 312 O1BBATP A 314 1555 1555 2.20 LINK MG MG A 312 O2BAATP A 314 1555 1555 2.22 LINK MG MG A 312 O HOH A 545 1555 1555 2.22 LINK MG MG A 312 O1B ATP B 313 1555 1555 2.08 LINK MG MG A 312 O3G ATP B 313 1555 1555 2.18 LINK MG MG A 312 O HOH B 527 1555 1555 2.34 LINK O HOH A 543 MG MG B 311 1555 1555 2.44 LINK O SER B 250 CS CS B 315 1555 1555 3.40 LINK O VAL B 252 CS CS B 315 1555 1555 2.97 LINK O ALA B 286 CS CS B 315 1555 1555 3.02 LINK O ASN B 289 CS CS B 315 1555 1555 2.90 LINK O GLY B 291 CS CS B 315 1555 1555 2.99 LINK O ARG B 293 CS CS B 315 1555 1555 3.04 LINK MG MG B 311 O2B ATP B 313 1555 1555 1.90 LINK MG MG B 311 O1G ATP B 313 1555 1555 2.30 LINK MG MG B 311 O HOH B 317 1555 1555 2.12 LINK MG MG B 311 O HOH B 448 1555 1555 2.32 LINK MG MG B 311 O HOH B 542 1555 1555 2.05 SITE 1 AC1 30 LYS A 185 ASN A 187 SER A 224 LEU A 225 SITE 2 AC1 30 GLY A 226 PRO A 227 GLY A 229 ALA A 254 SITE 3 AC1 30 GLY A 255 MET A 258 VAL A 280 GLY A 283 SITE 4 AC1 30 SER A 284 THR A 287 MG A 310 MG A 311 SITE 5 AC1 30 HOH A 320 HOH A 323 HOH A 326 HOH A 354 SITE 6 AC1 30 HOH A 510 HOH A 512 HOH A 530 HOH A 532 SITE 7 AC1 30 HOH A 534 HOH A 535 HOH A 536 LYS B 27 SITE 8 AC1 30 ATP B 312 HOH B 358 SITE 1 AC2 5 ATP A 313 HOH A 534 HOH A 535 HOH A 536 SITE 2 AC2 5 HOH B 533 SITE 1 AC3 4 ATP A 313 HOH A 530 HOH A 532 ATP B 312 SITE 1 AC4 6 SER A 250 VAL A 252 ALA A 286 ASN A 289 SITE 2 AC4 6 GLY A 291 ARG A 293 SITE 1 AC5 4 ATP A 314 HOH A 545 ATP B 313 HOH B 527 SITE 1 AC6 20 TYR A 23 PRO A 24 GLY A 26 LYS A 27 SITE 2 AC6 20 GLU A 102 MG A 312 HOH A 376 HOH A 411 SITE 3 AC6 20 HOH A 430 HOH A 494 HOH A 508 HOH A 529 SITE 4 AC6 20 HOH A 543 HOH A 544 HOH A 545 ASN B 187 SITE 5 AC6 20 LYS B 189 GLY B 226 THR B 251 ATP B 313 SITE 1 AC7 20 ASN A 187 GLY A 226 PRO A 227 MG A 311 SITE 2 AC7 20 ATP A 313 HOH A 463 HOH A 530 HOH A 532 SITE 3 AC7 20 TYR B 23 GLY B 26 LYS B 27 GLU B 102 SITE 4 AC7 20 HOH B 358 HOH B 386 HOH B 412 HOH B 418 SITE 5 AC7 20 HOH B 423 HOH B 494 HOH B 533 HOH B 534 SITE 1 AC8 5 HOH A 543 ATP B 313 HOH B 317 HOH B 448 SITE 2 AC8 5 HOH B 542 SITE 1 AC9 29 LYS A 27 MG A 312 ATP A 314 HOH A 411 SITE 2 AC9 29 HOH A 545 LYS B 185 ASN B 187 SER B 224 SITE 3 AC9 29 LEU B 225 GLY B 226 PRO B 227 GLY B 229 SITE 4 AC9 29 ALA B 254 GLY B 255 MET B 258 VAL B 280 SITE 5 AC9 29 GLY B 283 SER B 284 THR B 287 MG B 311 SITE 6 AC9 29 HOH B 317 HOH B 321 HOH B 340 HOH B 349 SITE 7 AC9 29 HOH B 408 HOH B 433 HOH B 448 HOH B 527 SITE 8 AC9 29 HOH B 542 SITE 1 BC1 6 SER B 250 VAL B 252 ALA B 286 ASN B 289 SITE 2 BC1 6 GLY B 291 ARG B 293 CRYST1 43.856 88.914 176.405 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005669 0.00000