HEADER RRNA BINDING PROTEIN/RNA 15-NOV-11 3UMY TITLE CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217A TTHL1 IN COMPLEX TITLE 2 WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (80-MER); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: FRAGMENT OF 23S RRNA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: RPLA, RPL1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL11(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A-PL/TTHL1 T217A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 12 ORGANISM_TAXID: 274; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL11(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PUC18/RRNATTH KEYWDS ROSSMANN FOLD, RIBOSOMAL PROTEIN, RRNA, RRNA BINDING, RIBOSOME, RRNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,N.A.NEVSKAYA,S.V.NIKONOV REVDAT 2 13-SEP-23 3UMY 1 REMARK SEQADV LINK REVDAT 1 31-OCT-12 3UMY 0 JRNL AUTH S.V.TISHCHENKO,E.Y.NIKONOVA,O.S.KOSTAREVA,A.G.GABDULKHAKOV, JRNL AUTH 2 A.V.SARSKIKH,W.PIENDL,S.V.NIKONOV,M.B.GARBER,N.A.NEVSKAYA JRNL TITL CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217A TTHL1 IN JRNL TITL 2 COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 32743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2021 - 4.3446 0.97 2705 143 0.1642 0.1923 REMARK 3 2 4.3446 - 3.4506 0.99 2643 139 0.1405 0.1710 REMARK 3 3 3.4506 - 3.0151 1.00 2623 138 0.1719 0.2145 REMARK 3 4 3.0151 - 2.7397 1.00 2626 138 0.2043 0.2605 REMARK 3 5 2.7397 - 2.5435 1.00 2609 137 0.2121 0.2868 REMARK 3 6 2.5435 - 2.3936 0.99 2566 135 0.2232 0.2686 REMARK 3 7 2.3936 - 2.2738 0.99 2584 136 0.2237 0.3021 REMARK 3 8 2.2738 - 2.1749 0.99 2581 136 0.2221 0.2830 REMARK 3 9 2.1749 - 2.0912 0.99 2546 134 0.2352 0.2917 REMARK 3 10 2.0912 - 2.0190 0.98 2532 134 0.2481 0.3487 REMARK 3 11 2.0190 - 1.9559 0.99 2544 134 0.2683 0.3223 REMARK 3 12 1.9559 - 1.9000 0.98 2546 134 0.2746 0.3239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.47 REMARK 3 B_SOL : 33.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03490 REMARK 3 B22 (A**2) : -1.96920 REMARK 3 B33 (A**2) : 1.93430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3729 REMARK 3 ANGLE : 1.139 5443 REMARK 3 CHIRALITY : 0.070 667 REMARK 3 PLANARITY : 0.007 396 REMARK 3 DIHEDRAL : 16.392 1641 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000068955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MONTEL 200 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.540 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.51 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3U4M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 -TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.55500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B2105 P G B2105 OP3 -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B2123 N1 - C6 - O6 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 37.79 -91.62 REMARK 500 GLU A 97 -6.39 -56.39 REMARK 500 GLU A 98 -70.58 -55.87 REMARK 500 ILE A 99 3.44 -64.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 42 OE2 REMARK 620 2 THR A 216 O 86.4 REMARK 620 3 C B2175 O2 103.0 138.5 REMARK 620 4 C B2175 O2' 153.5 75.6 79.4 REMARK 620 5 A B2176 O4' 130.6 121.3 83.0 75.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B2122 O4 REMARK 620 2 G B2123 O6 84.4 REMARK 620 3 HOH B2320 O 167.0 82.9 REMARK 620 4 HOH B2323 O 84.9 100.1 100.1 REMARK 620 5 HOH B2324 O 90.0 88.2 86.8 169.8 REMARK 620 6 HOH B2328 O 91.7 175.5 100.9 81.9 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B2125 O6 REMARK 620 2 HOH B2371 O 70.2 REMARK 620 3 HOH B2374 O 67.8 133.1 REMARK 620 4 HOH B2375 O 74.8 73.5 76.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B2128 O2 REMARK 620 2 C B2128 O2' 83.3 REMARK 620 3 A B2173 O2' 95.1 124.3 REMARK 620 4 HOH B2327 O 138.5 105.1 111.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B2155 OP2 REMARK 620 2 G B2157 O6 156.1 REMARK 620 3 HOH B2353 O 109.0 50.2 REMARK 620 4 HOH B2357 O 116.1 51.7 72.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U63 RELATED DB: PDB REMARK 900 THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-MRNA COMPLEX REMARK 900 RELATED ID: 2VPL RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN REMARK 900 FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII REMARK 900 RELATED ID: 2HW8 RELATED DB: PDB REMARK 900 STRUCTURE OF RIBOSOMAL PROTEIN L1-MRNA COMPLEX AT 2.1 RESOLUTION REMARK 900 RELATED ID: 1ZHO RELATED DB: PDB REMARK 900 THE STRUCTURE OF A RIBOSOMAL PROTEIN L1 IN COMPLEX WITH MRNA REMARK 900 RELATED ID: 1MZP RELATED DB: PDB REMARK 900 STRUCTURE OF THE L1 PROTUBERANCE IN THE RIBOSOME REMARK 900 RELATED ID: 3U4M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TTHL1 IN COMPLEX WITH 80NT REMARK 900 23S RNA FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: 3U42 RELATED DB: PDB REMARK 900 MUTANT RIBOSOMAL PROTEIN L1 FROM THERMUS THERMOPHILUS WITH REMARK 900 THREONINE 217 REPLACED BY VALINE REMARK 900 RELATED ID: 3U56 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MUTANT RIBOSOMAL PROTEIN T217V TTHL1 IN REMARK 900 COMPLEX WITH 80NT 23S RNA FROM THERMUS THERMOPHILUS DBREF 3UMY A 1 228 UNP P27150 RL1_THETH 2 229 DBREF 3UMY B 2105 2184 PDB 3UMY 3UMY 2105 2184 SEQADV 3UMY ALA A 217 UNP P27150 THR 218 ENGINEERED MUTATION SEQRES 1 A 228 PRO LYS HIS GLY LYS ARG TYR ARG ALA LEU LEU GLU LYS SEQRES 2 A 228 VAL ASP PRO ASN LYS ILE TYR THR ILE ASP GLU ALA ALA SEQRES 3 A 228 HIS LEU VAL LYS GLU LEU ALA THR ALA LYS PHE ASP GLU SEQRES 4 A 228 THR VAL GLU VAL HIS ALA LYS LEU GLY ILE ASP PRO ARG SEQRES 5 A 228 ARG SER ASP GLN ASN VAL ARG GLY THR VAL SER LEU PRO SEQRES 6 A 228 HIS GLY LEU GLY LYS GLN VAL ARG VAL LEU ALA ILE ALA SEQRES 7 A 228 LYS GLY GLU LYS ILE LYS GLU ALA GLU GLU ALA GLY ALA SEQRES 8 A 228 ASP TYR VAL GLY GLY GLU GLU ILE ILE GLN LYS ILE LEU SEQRES 9 A 228 ASP GLY TRP MET ASP PHE ASP ALA VAL VAL ALA THR PRO SEQRES 10 A 228 ASP VAL MET GLY ALA VAL GLY SER LYS LEU GLY ARG ILE SEQRES 11 A 228 LEU GLY PRO ARG GLY LEU LEU PRO ASN PRO LYS ALA GLY SEQRES 12 A 228 THR VAL GLY PHE ASN ILE GLY GLU ILE ILE ARG GLU ILE SEQRES 13 A 228 LYS ALA GLY ARG ILE GLU PHE ARG ASN ASP LYS THR GLY SEQRES 14 A 228 ALA ILE HIS ALA PRO VAL GLY LYS ALA SER PHE PRO PRO SEQRES 15 A 228 GLU LYS LEU ALA ASP ASN ILE ARG ALA PHE ILE ARG ALA SEQRES 16 A 228 LEU GLU ALA HIS LYS PRO GLU GLY ALA LYS GLY THR PHE SEQRES 17 A 228 LEU ARG SER VAL TYR VAL THR THR ALA MET GLY PRO SER SEQRES 18 A 228 VAL ARG ILE ASN PRO HIS SER SEQRES 1 B 80 G G G A U G C G U A G G A SEQRES 2 B 80 U A G G U G G G A G C C U SEQRES 3 B 80 G U G A A C C C C C G C C SEQRES 4 B 80 U C C G G G U G G G G G G SEQRES 5 B 80 G A G G C G C C G G U G A SEQRES 6 B 80 A A U A C C A C C C U U C SEQRES 7 B 80 C C HET CL A 301 1 HET CL A 302 1 HET SO4 A 303 5 HET NA A 304 1 HET MG B2201 1 HET MG B2202 1 HET MG B2203 1 HET MG B2204 1 HET SO4 B2205 5 HET SO4 B2206 5 HET SO4 B2207 5 HET SO4 B2208 5 HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION FORMUL 3 CL 2(CL 1-) FORMUL 5 SO4 5(O4 S 2-) FORMUL 6 NA NA 1+ FORMUL 7 MG 4(MG 2+) FORMUL 15 HOH *186(H2 O) HELIX 1 1 GLY A 4 GLU A 12 1 9 HELIX 2 2 THR A 21 VAL A 29 1 9 HELIX 3 3 LYS A 30 ALA A 33 5 4 HELIX 4 4 ARG A 53 ASN A 57 5 5 HELIX 5 5 GLU A 81 ALA A 89 1 9 HELIX 6 6 ILE A 99 ASP A 105 1 7 HELIX 7 7 VAL A 119 GLY A 132 1 14 HELIX 8 8 ASN A 148 ALA A 158 1 11 HELIX 9 9 PRO A 181 HIS A 199 1 19 SHEET 1 A 4 ALA A 170 LYS A 177 0 SHEET 2 A 4 THR A 40 LEU A 47 -1 N VAL A 41 O GLY A 176 SHEET 3 A 4 LEU A 209 THR A 216 -1 O THR A 215 N GLU A 42 SHEET 4 A 4 SER A 221 ARG A 223 -1 O VAL A 222 N VAL A 214 SHEET 1 B 2 ARG A 59 SER A 63 0 SHEET 2 B 2 ARG A 160 ARG A 164 -1 O ILE A 161 N VAL A 62 SHEET 1 C 3 TYR A 93 GLY A 95 0 SHEET 2 C 3 VAL A 74 ILE A 77 1 N ALA A 76 O TYR A 93 SHEET 3 C 3 ALA A 112 ALA A 115 1 O ALA A 112 N LEU A 75 LINK OE2 GLU A 42 NA NA A 304 1555 1555 2.73 LINK O THR A 216 NA NA A 304 1555 1555 2.68 LINK NA NA A 304 O2 C B2175 1555 1555 2.81 LINK NA NA A 304 O2' C B2175 1555 1555 2.96 LINK NA NA A 304 O4' A B2176 1555 1555 3.09 LINK O4 U B2122 MG MG B2201 1555 1555 2.59 LINK O6 G B2123 MG MG B2201 1555 1555 2.57 LINK O6 G B2125 MG MG B2204 1555 1555 2.85 LINK O2 C B2128 MG MG B2202 1555 1555 2.72 LINK O2' C B2128 MG MG B2202 1555 1555 2.84 LINK OP2 G B2155 MG MG B2203 1555 1555 2.79 LINK O6 G B2157 MG MG B2203 1555 1555 2.98 LINK O2' A B2173 MG MG B2202 1555 1555 2.74 LINK MG MG B2201 O HOH B2320 1555 1555 2.54 LINK MG MG B2201 O HOH B2323 1555 1555 2.71 LINK MG MG B2201 O HOH B2324 1555 1555 2.68 LINK MG MG B2201 O HOH B2328 1555 1555 2.64 LINK MG MG B2202 O HOH B2327 1555 1555 2.78 LINK MG MG B2203 O HOH B2353 1555 1555 2.81 LINK MG MG B2203 O HOH B2357 1555 1555 2.73 LINK MG MG B2204 O HOH B2371 1555 1555 2.81 LINK MG MG B2204 O HOH B2374 1555 1555 2.81 LINK MG MG B2204 O HOH B2375 1555 1555 2.68 SITE 1 AC1 5 SER A 211 VAL A 212 ARG A 223 ILE A 224 SITE 2 AC1 5 HOH A 441 SITE 1 AC2 1 PHE A 147 SITE 1 AC3 7 PRO A 1 LYS A 2 HIS A 3 ARG A 52 SITE 2 AC3 7 ARG A 53 SER A 54 HOH A 440 SITE 1 AC4 7 GLU A 42 THR A 215 THR A 216 ALA A 217 SITE 2 AC4 7 G B2123 C B2175 A B2176 SITE 1 AC5 6 U B2122 G B2123 HOH B2320 HOH B2323 SITE 2 AC5 6 HOH B2324 HOH B2328 SITE 1 AC6 5 C B2128 C B2129 A B2173 C B2174 SITE 2 AC6 5 HOH B2327 SITE 1 AC7 5 G B2155 G B2156 G B2157 HOH B2353 SITE 2 AC7 5 HOH B2357 SITE 1 AC8 4 G B2125 HOH B2371 HOH B2374 HOH B2375 SITE 1 AC9 4 LYS A 184 G B2156 HOH B2381 HOH B2383 SITE 1 BC1 3 C B2178 HOH B2346 HOH B2393 SITE 1 BC2 5 C B2139 C B2140 U B2150 G B2151 SITE 2 BC2 5 HOH B2388 SITE 1 BC3 2 G B2133 G B2157 CRYST1 67.110 68.820 88.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014901 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011257 0.00000