HEADER CELL CYCLE 17-NOV-11 3UOT TITLE CRYSTAL STRUCTURE OF MDC1 FHA DOMAIN IN COMPLEX WITH A PHOSPHORYLATED TITLE 2 PEPTIDE FROM THE MDC1 N-TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR OF DNA DAMAGE CHECKPOINT PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL FHA DOMAIN (RESIDUES 19-138); COMPND 5 SYNONYM: NUCLEAR FACTOR WITH BRCT DOMAINS 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MEDIATOR OF DNA DAMAGE CHECKPOINT PROTEIN 1; COMPND 9 CHAIN: D, E; COMPND 10 FRAGMENT: PHOSPHORYLATED N-TERMINUS (RESIDUES 1-10); COMPND 11 SYNONYM: NUCLEAR FACTOR WITH BRCT DOMAINS 1; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDC1, KIAA0170, NFBD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS FHA DOMAIN, DNA-DAMAGE, MDC1 DIMERIZATION, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.CLAPPERTON,J.LLOYD,L.F.HAIRE,J.LI,S.J.SMERDON REVDAT 2 18-JUL-12 3UOT 1 JRNL REVDAT 1 28-DEC-11 3UOT 0 JRNL AUTH S.JUNGMICHEL,J.A.CLAPPERTON,J.LLOYD,F.J.HARI,C.SPYCHER, JRNL AUTH 2 L.PAVIC,J.LI,L.F.HAIRE,M.BONALLI,D.H.LARSEN,C.LUKAS,J.LUKAS, JRNL AUTH 3 D.MACMILLAN,M.L.NIELSEN,M.STUCKI,S.J.SMERDON JRNL TITL THE MOLECULAR BASIS OF ATM-DEPENDENT DIMERIZATION OF THE JRNL TITL 2 MDC1 DNA DAMAGE CHECKPOINT MEDIATOR. JRNL REF NUCLEIC ACIDS RES. V. 40 3913 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22234878 JRNL DOI 10.1093/NAR/GKR1300 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 21805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.31000 REMARK 3 B22 (A**2) : -1.64000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.575 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1947 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2646 ; 1.481 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 6.485 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;38.972 ;23.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;16.498 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 291 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1473 ; 0.007 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0290 34.0600 29.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.0518 T22: 0.0836 REMARK 3 T33: 0.1195 T12: -0.0028 REMARK 3 T13: 0.0652 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.2447 L22: 2.8272 REMARK 3 L33: 1.4435 L12: 0.5038 REMARK 3 L13: 0.7483 L23: 0.0689 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.1017 S13: 0.0441 REMARK 3 S21: -0.2715 S22: 0.0842 S23: -0.5090 REMARK 3 S31: 0.0259 S32: 0.2387 S33: -0.0583 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8600 16.5200 19.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.1816 REMARK 3 T33: 0.1726 T12: -0.0193 REMARK 3 T13: -0.0343 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.8088 L22: 11.7073 REMARK 3 L33: 4.2255 L12: 4.4192 REMARK 3 L13: 0.6155 L23: 3.3628 REMARK 3 S TENSOR REMARK 3 S11: -0.2556 S12: 0.0527 S13: -0.1581 REMARK 3 S21: -0.4087 S22: 0.0914 S23: -0.2210 REMARK 3 S31: 0.5312 S32: -0.1376 S33: 0.1642 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 134 REMARK 3 ORIGIN FOR THE GROUP (A): -25.8490 26.4920 27.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0630 REMARK 3 T33: 0.0409 T12: -0.0359 REMARK 3 T13: -0.0294 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.4010 L22: 6.2845 REMARK 3 L33: 2.4845 L12: 0.5792 REMARK 3 L13: 0.1553 L23: 1.7257 REMARK 3 S TENSOR REMARK 3 S11: -0.2007 S12: 0.1581 S13: -0.0603 REMARK 3 S21: -0.4151 S22: 0.1970 S23: 0.4219 REMARK 3 S31: 0.0128 S32: -0.0672 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 3 E 9 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2370 43.6040 20.2090 REMARK 3 T TENSOR REMARK 3 T11: 0.2702 T22: 0.1954 REMARK 3 T33: 0.1263 T12: -0.0408 REMARK 3 T13: -0.0637 T23: 0.1148 REMARK 3 L TENSOR REMARK 3 L11: 0.2365 L22: 11.3137 REMARK 3 L33: 2.4682 L12: -1.3827 REMARK 3 L13: 0.0492 L23: 2.4902 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: 0.0628 S13: 0.0558 REMARK 3 S21: -0.6635 S22: -0.0105 S23: -0.3175 REMARK 3 S31: -0.5548 S32: 0.2545 S33: -0.0064 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3UOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-11. REMARK 100 THE RCSB ID CODE IS RCSB069022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.961 REMARK 200 MONOCHROMATOR : 0.870 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% V/V ETHANOL, 0.1M SODIUM ACETATE REMARK 280 PH 5.5, MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.24250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.04050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.04050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.24250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 136 REMARK 465 LEU A 137 REMARK 465 PRO A 138 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 465 GLN B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 GLU B 22 REMARK 465 SER B 23 REMARK 465 LEU B 24 REMARK 465 ARG B 25 REMARK 465 CYS B 26 REMARK 465 ASN B 27 REMARK 465 VAL B 135 REMARK 465 SER B 136 REMARK 465 LEU B 137 REMARK 465 PRO B 138 REMARK 465 MET D 1 REMARK 465 ASP D 10 REMARK 465 MET E 1 REMARK 465 ASP E 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU D 2 CG CD OE1 OE2 REMARK 470 GLU E 2 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 67 43.44 -81.83 REMARK 500 CYS A 92 30.33 -96.27 REMARK 500 LYS A 105 157.07 171.55 REMARK 500 ALA A 124 -118.80 51.65 REMARK 500 ALA B 124 -116.39 50.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 102 PRO B 103 146.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 139 DISTANCE = 5.48 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UN0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MDC1 FHA DOMAIN DBREF 3UOT A 19 138 UNP Q14676 MDC1_HUMAN 19 138 DBREF 3UOT B 19 138 UNP Q14676 MDC1_HUMAN 19 138 DBREF 3UOT D 1 10 UNP Q14676 MDC1_HUMAN 1 10 DBREF 3UOT E 1 10 UNP Q14676 MDC1_HUMAN 1 10 SEQADV 3UOT GLY A 17 UNP Q14676 EXPRESSION TAG SEQADV 3UOT SER A 18 UNP Q14676 EXPRESSION TAG SEQADV 3UOT GLY B 17 UNP Q14676 EXPRESSION TAG SEQADV 3UOT SER B 18 UNP Q14676 EXPRESSION TAG SEQADV 3UOT MSE D 6 UNP Q14676 ALA 6 ENGINEERED MUTATION SEQADV 3UOT MSE E 6 UNP Q14676 ALA 6 ENGINEERED MUTATION SEQRES 1 A 122 GLY SER GLN SER SER GLU SER LEU ARG CYS ASN VAL GLU SEQRES 2 A 122 PRO VAL GLY ARG LEU HIS ILE PHE SER GLY ALA HIS GLY SEQRES 3 A 122 PRO GLU LYS ASP PHE PRO LEU HIS LEU GLY LYS ASN VAL SEQRES 4 A 122 VAL GLY ARG MSE PRO ASP CYS SER VAL ALA LEU PRO PHE SEQRES 5 A 122 PRO SER ILE SER LYS GLN HIS ALA GLU ILE GLU ILE LEU SEQRES 6 A 122 ALA TRP ASP LYS ALA PRO ILE LEU ARG ASP CYS GLY SER SEQRES 7 A 122 LEU ASN GLY THR GLN ILE LEU ARG PRO PRO LYS VAL LEU SEQRES 8 A 122 SER PRO GLY VAL SER HIS ARG LEU ARG ASP GLN GLU LEU SEQRES 9 A 122 ILE LEU PHE ALA ASP LEU LEU CYS GLN TYR HIS ARG LEU SEQRES 10 A 122 ASP VAL SER LEU PRO SEQRES 1 B 122 GLY SER GLN SER SER GLU SER LEU ARG CYS ASN VAL GLU SEQRES 2 B 122 PRO VAL GLY ARG LEU HIS ILE PHE SER GLY ALA HIS GLY SEQRES 3 B 122 PRO GLU LYS ASP PHE PRO LEU HIS LEU GLY LYS ASN VAL SEQRES 4 B 122 VAL GLY ARG MSE PRO ASP CYS SER VAL ALA LEU PRO PHE SEQRES 5 B 122 PRO SER ILE SER LYS GLN HIS ALA GLU ILE GLU ILE LEU SEQRES 6 B 122 ALA TRP ASP LYS ALA PRO ILE LEU ARG ASP CYS GLY SER SEQRES 7 B 122 LEU ASN GLY THR GLN ILE LEU ARG PRO PRO LYS VAL LEU SEQRES 8 B 122 SER PRO GLY VAL SER HIS ARG LEU ARG ASP GLN GLU LEU SEQRES 9 B 122 ILE LEU PHE ALA ASP LEU LEU CYS GLN TYR HIS ARG LEU SEQRES 10 B 122 ASP VAL SER LEU PRO SEQRES 1 D 10 MET GLU ASP TPO GLN MSE ILE ASP TRP ASP SEQRES 1 E 10 MET GLU ASP TPO GLN MSE ILE ASP TRP ASP MODRES 3UOT MSE A 59 MET SELENOMETHIONINE MODRES 3UOT MSE B 59 MET SELENOMETHIONINE MODRES 3UOT TPO D 4 THR PHOSPHOTHREONINE MODRES 3UOT MSE D 6 MET SELENOMETHIONINE MODRES 3UOT TPO E 4 THR PHOSPHOTHREONINE MODRES 3UOT MSE E 6 MET SELENOMETHIONINE HET MSE A 59 8 HET MSE B 59 8 HET TPO D 4 11 HET MSE D 6 8 HET TPO E 4 11 HET MSE E 6 8 HETNAM MSE SELENOMETHIONINE HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 5 HOH *150(H2 O) HELIX 1 1 SER A 20 ARG A 25 1 6 SHEET 1 A 6 LYS A 45 LEU A 49 0 SHEET 2 A 6 GLY A 32 ILE A 36 -1 N ILE A 36 O LYS A 45 SHEET 3 A 6 LEU A 126 ARG A 132 -1 O GLN A 129 N HIS A 35 SHEET 4 A 6 LEU A 120 PHE A 123 -1 N PHE A 123 O LEU A 126 SHEET 5 A 6 THR A 98 ILE A 100 -1 N GLN A 99 O LEU A 122 SHEET 6 A 6 LYS A 105 VAL A 106 -1 O LYS A 105 N ILE A 100 SHEET 1 B 5 VAL A 64 ALA A 65 0 SHEET 2 B 5 GLY A 52 GLY A 57 1 N VAL A 55 O VAL A 64 SHEET 3 B 5 ALA A 76 ILE A 80 -1 O ILE A 80 N GLY A 52 SHEET 4 B 5 ILE A 88 ASP A 91 -1 O ILE A 88 N GLU A 79 SHEET 5 B 5 HIS A 113 ARG A 114 -1 O HIS A 113 N LEU A 89 SHEET 1 C 6 LYS B 45 LEU B 49 0 SHEET 2 C 6 GLY B 32 ILE B 36 -1 N ILE B 36 O LYS B 45 SHEET 3 C 6 LEU B 126 ARG B 132 -1 O GLN B 129 N HIS B 35 SHEET 4 C 6 LEU B 120 PHE B 123 -1 N ILE B 121 O CYS B 128 SHEET 5 C 6 THR B 98 ILE B 100 -1 N GLN B 99 O LEU B 122 SHEET 6 C 6 LYS B 105 VAL B 106 -1 O LYS B 105 N ILE B 100 SHEET 1 D 5 VAL B 64 ALA B 65 0 SHEET 2 D 5 GLY B 52 GLY B 57 1 N VAL B 55 O VAL B 64 SHEET 3 D 5 ALA B 76 ILE B 80 -1 O ALA B 76 N VAL B 56 SHEET 4 D 5 ILE B 88 ASP B 91 -1 O ARG B 90 N GLU B 77 SHEET 5 D 5 HIS B 113 ARG B 114 -1 O HIS B 113 N LEU B 89 LINK C ARG A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N PRO A 60 1555 1555 1.35 LINK C ARG B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N PRO B 60 1555 1555 1.35 LINK C ASP D 3 N TPO D 4 1555 1555 1.33 LINK C TPO D 4 N GLN D 5 1555 1555 1.33 LINK C GLN D 5 N MSE D 6 1555 1555 1.33 LINK C MSE D 6 N ILE D 7 1555 1555 1.33 LINK C ASP E 3 N TPO E 4 1555 1555 1.33 LINK C TPO E 4 N GLN E 5 1555 1555 1.34 LINK C GLN E 5 N MSE E 6 1555 1555 1.33 LINK C MSE E 6 N ILE E 7 1555 1555 1.34 CISPEP 1 ARG A 102 PRO A 103 0 -5.98 CRYST1 58.485 59.880 72.081 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013873 0.00000