data_3UP1 # _entry.id 3UP1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UP1 pdb_00003up1 10.2210/pdb3up1/pdb RCSB RCSB069030 ? ? WWPDB D_1000069030 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-02-08 2 'Structure model' 1 1 2012-08-22 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2022-12-21 5 'Structure model' 2 2 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' pdbx_struct_special_symmetry 14 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 15 3 'Structure model' pdbx_validate_close_contact 16 3 'Structure model' struct_asym 17 3 'Structure model' struct_conn 18 3 'Structure model' struct_ref_seq_dif 19 3 'Structure model' struct_site 20 3 'Structure model' struct_site_gen 21 4 'Structure model' chem_comp 22 4 'Structure model' database_2 23 4 'Structure model' struct_ref_seq_dif 24 5 'Structure model' chem_comp_atom 25 5 'Structure model' chem_comp_bond 26 5 'Structure model' pdbx_entry_details 27 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_entity.formula_weight' 17 3 'Structure model' '_entity.pdbx_description' 18 3 'Structure model' '_entity.pdbx_number_of_molecules' 19 3 'Structure model' '_entity.type' 20 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 3 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 22 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_asym_id' 23 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_comp_id' 24 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_seq_id' 25 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_asym_id' 26 3 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_comp_id' 27 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 28 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 29 3 'Structure model' '_struct_conn.pdbx_dist_value' 30 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 31 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 37 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 3 'Structure model' '_struct_ref_seq_dif.details' 44 4 'Structure model' '_chem_comp.pdbx_synonyms' 45 4 'Structure model' '_database_2.pdbx_DOI' 46 4 'Structure model' '_database_2.pdbx_database_accession' 47 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.entry_id 3UP1 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-11-17 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'McElroy, C.A.' 1 'Holland, P.J.' 2 'Walsh, S.T.R.' 3 # _citation.id primary _citation.title 'Structural reorganization of the interleukin-7 signaling complex.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 2503 _citation.page_last 2508 _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22308406 _citation.pdbx_database_id_DOI 10.1073/pnas.1116582109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'McElroy, C.A.' 1 ? primary 'Holland, P.J.' 2 ? primary 'Zhao, P.' 3 ? primary 'Lim, J.M.' 4 ? primary 'Wells, L.' 5 ? primary 'Eisenstein, E.' 6 ? primary 'Walsh, S.T.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Interleukin-7 receptor subunit alpha' 25691.020 2 ? ? ? ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? 3 non-polymer man alpha-L-fucopyranose 164.156 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 6 non-polymer man 2-acetamido-2-deoxy-beta-D-galactopyranose 221.208 1 ? ? ? ? 7 water nat water 18.015 135 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IL-7 receptor subunit alpha, IL-7R subunit alpha, IL-7R-alpha, IL-7RA, CDw127' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMESGYAQNGDLEDAELDDYSFSCYSQLEVNGSQHSLTCAFEDPDVNTTNLEFEICGALVEVKCLNFRKLQEIYFIET KKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDEN KWTHVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSSGEMD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMESGYAQNGDLEDAELDDYSFSCYSQLEVNGSQHSLTCAFEDPDVNTTNLEFEICGALVEVKCLNFRKLQEIYFIET KKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDEN KWTHVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSSGEMD ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 alpha-L-fucopyranose FUC 4 'SULFATE ION' SO4 5 GLYCEROL GOL 6 2-acetamido-2-deoxy-beta-D-galactopyranose NGA 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLU n 1 6 SER n 1 7 GLY n 1 8 TYR n 1 9 ALA n 1 10 GLN n 1 11 ASN n 1 12 GLY n 1 13 ASP n 1 14 LEU n 1 15 GLU n 1 16 ASP n 1 17 ALA n 1 18 GLU n 1 19 LEU n 1 20 ASP n 1 21 ASP n 1 22 TYR n 1 23 SER n 1 24 PHE n 1 25 SER n 1 26 CYS n 1 27 TYR n 1 28 SER n 1 29 GLN n 1 30 LEU n 1 31 GLU n 1 32 VAL n 1 33 ASN n 1 34 GLY n 1 35 SER n 1 36 GLN n 1 37 HIS n 1 38 SER n 1 39 LEU n 1 40 THR n 1 41 CYS n 1 42 ALA n 1 43 PHE n 1 44 GLU n 1 45 ASP n 1 46 PRO n 1 47 ASP n 1 48 VAL n 1 49 ASN n 1 50 THR n 1 51 THR n 1 52 ASN n 1 53 LEU n 1 54 GLU n 1 55 PHE n 1 56 GLU n 1 57 ILE n 1 58 CYS n 1 59 GLY n 1 60 ALA n 1 61 LEU n 1 62 VAL n 1 63 GLU n 1 64 VAL n 1 65 LYS n 1 66 CYS n 1 67 LEU n 1 68 ASN n 1 69 PHE n 1 70 ARG n 1 71 LYS n 1 72 LEU n 1 73 GLN n 1 74 GLU n 1 75 ILE n 1 76 TYR n 1 77 PHE n 1 78 ILE n 1 79 GLU n 1 80 THR n 1 81 LYS n 1 82 LYS n 1 83 PHE n 1 84 LEU n 1 85 LEU n 1 86 ILE n 1 87 GLY n 1 88 LYS n 1 89 SER n 1 90 ASN n 1 91 ILE n 1 92 CYS n 1 93 VAL n 1 94 LYS n 1 95 VAL n 1 96 GLY n 1 97 GLU n 1 98 LYS n 1 99 SER n 1 100 LEU n 1 101 THR n 1 102 CYS n 1 103 LYS n 1 104 LYS n 1 105 ILE n 1 106 ASP n 1 107 LEU n 1 108 THR n 1 109 THR n 1 110 ILE n 1 111 VAL n 1 112 LYS n 1 113 PRO n 1 114 GLU n 1 115 ALA n 1 116 PRO n 1 117 PHE n 1 118 ASP n 1 119 LEU n 1 120 SER n 1 121 VAL n 1 122 VAL n 1 123 TYR n 1 124 ARG n 1 125 GLU n 1 126 GLY n 1 127 ALA n 1 128 ASN n 1 129 ASP n 1 130 PHE n 1 131 VAL n 1 132 VAL n 1 133 THR n 1 134 PHE n 1 135 ASN n 1 136 THR n 1 137 SER n 1 138 HIS n 1 139 LEU n 1 140 GLN n 1 141 LYS n 1 142 LYS n 1 143 TYR n 1 144 VAL n 1 145 LYS n 1 146 VAL n 1 147 LEU n 1 148 MET n 1 149 HIS n 1 150 ASP n 1 151 VAL n 1 152 ALA n 1 153 TYR n 1 154 ARG n 1 155 GLN n 1 156 GLU n 1 157 LYS n 1 158 ASP n 1 159 GLU n 1 160 ASN n 1 161 LYS n 1 162 TRP n 1 163 THR n 1 164 HIS n 1 165 VAL n 1 166 ASN n 1 167 LEU n 1 168 SER n 1 169 SER n 1 170 THR n 1 171 LYS n 1 172 LEU n 1 173 THR n 1 174 LEU n 1 175 LEU n 1 176 GLN n 1 177 ARG n 1 178 LYS n 1 179 LEU n 1 180 GLN n 1 181 PRO n 1 182 ALA n 1 183 ALA n 1 184 MET n 1 185 TYR n 1 186 GLU n 1 187 ILE n 1 188 LYS n 1 189 VAL n 1 190 ARG n 1 191 SER n 1 192 ILE n 1 193 PRO n 1 194 ASP n 1 195 HIS n 1 196 TYR n 1 197 PHE n 1 198 LYS n 1 199 GLY n 1 200 PHE n 1 201 TRP n 1 202 SER n 1 203 GLU n 1 204 TRP n 1 205 SER n 1 206 PRO n 1 207 SER n 1 208 TYR n 1 209 TYR n 1 210 PHE n 1 211 ARG n 1 212 THR n 1 213 PRO n 1 214 GLU n 1 215 ILE n 1 216 ASN n 1 217 ASN n 1 218 SER n 1 219 SER n 1 220 GLY n 1 221 GLU n 1 222 MET n 1 223 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene IL7R _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name Drosophila _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32281 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Schneider S2 insect cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMT-BipA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 NGA 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-galactopyranose ;N-acetyl-beta-D-galactosamine; 2-acetamido-2-deoxy-beta-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-D-GALACTOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc NGA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAcb NGA 'COMMON NAME' GMML 1.0 N-acetyl-b-D-galactopyranosamine NGA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GalpNAc NGA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 MET 4 0 ? ? ? A . n A 1 5 GLU 5 1 ? ? ? A . n A 1 6 SER 6 2 ? ? ? A . n A 1 7 GLY 7 3 ? ? ? A . n A 1 8 TYR 8 4 ? ? ? A . n A 1 9 ALA 9 5 ? ? ? A . n A 1 10 GLN 10 6 ? ? ? A . n A 1 11 ASN 11 7 ? ? ? A . n A 1 12 GLY 12 8 ? ? ? A . n A 1 13 ASP 13 9 ? ? ? A . n A 1 14 LEU 14 10 ? ? ? A . n A 1 15 GLU 15 11 ? ? ? A . n A 1 16 ASP 16 12 12 ASP ASP A . n A 1 17 ALA 17 13 13 ALA ALA A . n A 1 18 GLU 18 14 14 GLU GLU A . n A 1 19 LEU 19 15 15 LEU LEU A . n A 1 20 ASP 20 16 16 ASP ASP A . n A 1 21 ASP 21 17 17 ASP ASP A . n A 1 22 TYR 22 18 18 TYR TYR A . n A 1 23 SER 23 19 19 SER SER A . n A 1 24 PHE 24 20 20 PHE PHE A . n A 1 25 SER 25 21 21 SER SER A . n A 1 26 CYS 26 22 22 CYS CYS A . n A 1 27 TYR 27 23 23 TYR TYR A . n A 1 28 SER 28 24 24 SER SER A . n A 1 29 GLN 29 25 25 GLN GLN A . n A 1 30 LEU 30 26 26 LEU LEU A . n A 1 31 GLU 31 27 27 GLU GLU A . n A 1 32 VAL 32 28 28 VAL VAL A . n A 1 33 ASN 33 29 29 ASN ASN A . n A 1 34 GLY 34 30 30 GLY GLY A . n A 1 35 SER 35 31 31 SER SER A . n A 1 36 GLN 36 32 32 GLN GLN A . n A 1 37 HIS 37 33 33 HIS HIS A . n A 1 38 SER 38 34 34 SER SER A . n A 1 39 LEU 39 35 35 LEU LEU A . n A 1 40 THR 40 36 36 THR THR A . n A 1 41 CYS 41 37 37 CYS CYS A . n A 1 42 ALA 42 38 38 ALA ALA A . n A 1 43 PHE 43 39 39 PHE PHE A . n A 1 44 GLU 44 40 40 GLU GLU A . n A 1 45 ASP 45 41 41 ASP ASP A . n A 1 46 PRO 46 42 42 PRO PRO A . n A 1 47 ASP 47 43 43 ASP ASP A . n A 1 48 VAL 48 44 44 VAL VAL A . n A 1 49 ASN 49 45 45 ASN ASN A . n A 1 50 THR 50 46 46 THR THR A . n A 1 51 THR 51 47 47 THR THR A . n A 1 52 ASN 52 48 48 ASN ASN A . n A 1 53 LEU 53 49 49 LEU LEU A . n A 1 54 GLU 54 50 50 GLU GLU A . n A 1 55 PHE 55 51 51 PHE PHE A . n A 1 56 GLU 56 52 52 GLU GLU A . n A 1 57 ILE 57 53 53 ILE ILE A . n A 1 58 CYS 58 54 54 CYS CYS A . n A 1 59 GLY 59 55 55 GLY GLY A . n A 1 60 ALA 60 56 56 ALA ALA A . n A 1 61 LEU 61 57 57 LEU LEU A . n A 1 62 VAL 62 58 58 VAL VAL A . n A 1 63 GLU 63 59 59 GLU GLU A . n A 1 64 VAL 64 60 60 VAL VAL A . n A 1 65 LYS 65 61 61 LYS LYS A . n A 1 66 CYS 66 62 62 CYS CYS A . n A 1 67 LEU 67 63 63 LEU LEU A . n A 1 68 ASN 68 64 64 ASN ASN A . n A 1 69 PHE 69 65 65 PHE PHE A . n A 1 70 ARG 70 66 66 ARG ARG A . n A 1 71 LYS 71 67 67 LYS LYS A . n A 1 72 LEU 72 68 68 LEU LEU A . n A 1 73 GLN 73 69 69 GLN GLN A . n A 1 74 GLU 74 70 70 GLU GLU A . n A 1 75 ILE 75 71 71 ILE ILE A . n A 1 76 TYR 76 72 72 TYR TYR A . n A 1 77 PHE 77 73 73 PHE PHE A . n A 1 78 ILE 78 74 74 ILE ILE A . n A 1 79 GLU 79 75 75 GLU GLU A . n A 1 80 THR 80 76 76 THR THR A . n A 1 81 LYS 81 77 77 LYS LYS A . n A 1 82 LYS 82 78 78 LYS LYS A . n A 1 83 PHE 83 79 79 PHE PHE A . n A 1 84 LEU 84 80 80 LEU LEU A . n A 1 85 LEU 85 81 81 LEU LEU A . n A 1 86 ILE 86 82 82 ILE ILE A . n A 1 87 GLY 87 83 83 GLY GLY A . n A 1 88 LYS 88 84 84 LYS LYS A . n A 1 89 SER 89 85 85 SER SER A . n A 1 90 ASN 90 86 86 ASN ASN A . n A 1 91 ILE 91 87 87 ILE ILE A . n A 1 92 CYS 92 88 88 CYS CYS A . n A 1 93 VAL 93 89 89 VAL VAL A . n A 1 94 LYS 94 90 90 LYS LYS A . n A 1 95 VAL 95 91 91 VAL VAL A . n A 1 96 GLY 96 92 92 GLY GLY A . n A 1 97 GLU 97 93 93 GLU GLU A . n A 1 98 LYS 98 94 94 LYS LYS A . n A 1 99 SER 99 95 95 SER SER A . n A 1 100 LEU 100 96 96 LEU LEU A . n A 1 101 THR 101 97 97 THR THR A . n A 1 102 CYS 102 98 98 CYS CYS A . n A 1 103 LYS 103 99 99 LYS LYS A . n A 1 104 LYS 104 100 100 LYS LYS A . n A 1 105 ILE 105 101 101 ILE ILE A . n A 1 106 ASP 106 102 102 ASP ASP A . n A 1 107 LEU 107 103 103 LEU LEU A . n A 1 108 THR 108 104 104 THR THR A . n A 1 109 THR 109 105 105 THR THR A . n A 1 110 ILE 110 106 106 ILE ILE A . n A 1 111 VAL 111 107 107 VAL VAL A . n A 1 112 LYS 112 108 108 LYS LYS A . n A 1 113 PRO 113 109 109 PRO PRO A . n A 1 114 GLU 114 110 110 GLU GLU A . n A 1 115 ALA 115 111 111 ALA ALA A . n A 1 116 PRO 116 112 112 PRO PRO A . n A 1 117 PHE 117 113 113 PHE PHE A . n A 1 118 ASP 118 114 114 ASP ASP A . n A 1 119 LEU 119 115 115 LEU LEU A . n A 1 120 SER 120 116 116 SER SER A . n A 1 121 VAL 121 117 117 VAL VAL A . n A 1 122 VAL 122 118 118 VAL VAL A . n A 1 123 TYR 123 119 119 TYR TYR A . n A 1 124 ARG 124 120 120 ARG ARG A . n A 1 125 GLU 125 121 121 GLU GLU A . n A 1 126 GLY 126 122 122 GLY GLY A . n A 1 127 ALA 127 123 123 ALA ALA A . n A 1 128 ASN 128 124 124 ASN ASN A . n A 1 129 ASP 129 125 125 ASP ASP A . n A 1 130 PHE 130 126 126 PHE PHE A . n A 1 131 VAL 131 127 127 VAL VAL A . n A 1 132 VAL 132 128 128 VAL VAL A . n A 1 133 THR 133 129 129 THR THR A . n A 1 134 PHE 134 130 130 PHE PHE A . n A 1 135 ASN 135 131 131 ASN ASN A . n A 1 136 THR 136 132 132 THR THR A . n A 1 137 SER 137 133 133 SER SER A . n A 1 138 HIS 138 134 134 HIS HIS A . n A 1 139 LEU 139 135 135 LEU LEU A . n A 1 140 GLN 140 136 136 GLN GLN A . n A 1 141 LYS 141 137 137 LYS LYS A . n A 1 142 LYS 142 138 138 LYS LYS A . n A 1 143 TYR 143 139 139 TYR TYR A . n A 1 144 VAL 144 140 140 VAL VAL A . n A 1 145 LYS 145 141 141 LYS LYS A . n A 1 146 VAL 146 142 142 VAL VAL A . n A 1 147 LEU 147 143 143 LEU LEU A . n A 1 148 MET 148 144 144 MET MET A . n A 1 149 HIS 149 145 145 HIS HIS A . n A 1 150 ASP 150 146 146 ASP ASP A . n A 1 151 VAL 151 147 147 VAL VAL A . n A 1 152 ALA 152 148 148 ALA ALA A . n A 1 153 TYR 153 149 149 TYR TYR A . n A 1 154 ARG 154 150 150 ARG ARG A . n A 1 155 GLN 155 151 151 GLN GLN A . n A 1 156 GLU 156 152 152 GLU GLU A . n A 1 157 LYS 157 153 153 LYS LYS A . n A 1 158 ASP 158 154 154 ASP ASP A . n A 1 159 GLU 159 155 155 GLU GLU A . n A 1 160 ASN 160 156 156 ASN ASN A . n A 1 161 LYS 161 157 157 LYS LYS A . n A 1 162 TRP 162 158 158 TRP TRP A . n A 1 163 THR 163 159 159 THR THR A . n A 1 164 HIS 164 160 160 HIS HIS A . n A 1 165 VAL 165 161 161 VAL VAL A . n A 1 166 ASN 166 162 162 ASN ASN A . n A 1 167 LEU 167 163 163 LEU LEU A . n A 1 168 SER 168 164 164 SER SER A . n A 1 169 SER 169 165 165 SER SER A . n A 1 170 THR 170 166 166 THR THR A . n A 1 171 LYS 171 167 167 LYS LYS A . n A 1 172 LEU 172 168 168 LEU LEU A . n A 1 173 THR 173 169 169 THR THR A . n A 1 174 LEU 174 170 170 LEU LEU A . n A 1 175 LEU 175 171 171 LEU LEU A . n A 1 176 GLN 176 172 172 GLN GLN A . n A 1 177 ARG 177 173 173 ARG ARG A . n A 1 178 LYS 178 174 174 LYS LYS A . n A 1 179 LEU 179 175 175 LEU LEU A . n A 1 180 GLN 180 176 176 GLN GLN A . n A 1 181 PRO 181 177 177 PRO PRO A . n A 1 182 ALA 182 178 178 ALA ALA A . n A 1 183 ALA 183 179 179 ALA ALA A . n A 1 184 MET 184 180 180 MET MET A . n A 1 185 TYR 185 181 181 TYR TYR A . n A 1 186 GLU 186 182 182 GLU GLU A . n A 1 187 ILE 187 183 183 ILE ILE A . n A 1 188 LYS 188 184 184 LYS LYS A . n A 1 189 VAL 189 185 185 VAL VAL A . n A 1 190 ARG 190 186 186 ARG ARG A . n A 1 191 SER 191 187 187 SER SER A . n A 1 192 ILE 192 188 188 ILE ILE A . n A 1 193 PRO 193 189 189 PRO PRO A . n A 1 194 ASP 194 190 190 ASP ASP A . n A 1 195 HIS 195 191 191 HIS HIS A . n A 1 196 TYR 196 192 192 TYR TYR A . n A 1 197 PHE 197 193 193 PHE PHE A . n A 1 198 LYS 198 194 194 LYS LYS A . n A 1 199 GLY 199 195 195 GLY GLY A . n A 1 200 PHE 200 196 196 PHE PHE A . n A 1 201 TRP 201 197 197 TRP TRP A . n A 1 202 SER 202 198 198 SER SER A . n A 1 203 GLU 203 199 199 GLU GLU A . n A 1 204 TRP 204 200 200 TRP TRP A . n A 1 205 SER 205 201 201 SER SER A . n A 1 206 PRO 206 202 202 PRO PRO A . n A 1 207 SER 207 203 203 SER SER A . n A 1 208 TYR 208 204 204 TYR TYR A . n A 1 209 TYR 209 205 205 TYR TYR A . n A 1 210 PHE 210 206 206 PHE PHE A . n A 1 211 ARG 211 207 207 ARG ARG A . n A 1 212 THR 212 208 208 THR THR A . n A 1 213 PRO 213 209 209 PRO PRO A . n A 1 214 GLU 214 210 210 GLU GLU A . n A 1 215 ILE 215 211 211 ILE ILE A . n A 1 216 ASN 216 212 212 ASN ASN A . n A 1 217 ASN 217 213 ? ? ? A . n A 1 218 SER 218 214 ? ? ? A . n A 1 219 SER 219 215 ? ? ? A . n A 1 220 GLY 220 216 ? ? ? A . n A 1 221 GLU 221 217 ? ? ? A . n A 1 222 MET 222 218 ? ? ? A . n A 1 223 ASP 223 219 ? ? ? A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 SER 2 -2 ? ? ? B . n B 1 3 HIS 3 -1 ? ? ? B . n B 1 4 MET 4 0 ? ? ? B . n B 1 5 GLU 5 1 ? ? ? B . n B 1 6 SER 6 2 ? ? ? B . n B 1 7 GLY 7 3 ? ? ? B . n B 1 8 TYR 8 4 ? ? ? B . n B 1 9 ALA 9 5 ? ? ? B . n B 1 10 GLN 10 6 ? ? ? B . n B 1 11 ASN 11 7 ? ? ? B . n B 1 12 GLY 12 8 ? ? ? B . n B 1 13 ASP 13 9 ? ? ? B . n B 1 14 LEU 14 10 ? ? ? B . n B 1 15 GLU 15 11 ? ? ? B . n B 1 16 ASP 16 12 ? ? ? B . n B 1 17 ALA 17 13 ? ? ? B . n B 1 18 GLU 18 14 ? ? ? B . n B 1 19 LEU 19 15 ? ? ? B . n B 1 20 ASP 20 16 16 ASP ALA B . n B 1 21 ASP 21 17 17 ASP ASP B . n B 1 22 TYR 22 18 18 TYR TYR B . n B 1 23 SER 23 19 19 SER SER B . n B 1 24 PHE 24 20 20 PHE PHE B . n B 1 25 SER 25 21 21 SER SER B . n B 1 26 CYS 26 22 22 CYS CYS B . n B 1 27 TYR 27 23 23 TYR TYR B . n B 1 28 SER 28 24 24 SER SER B . n B 1 29 GLN 29 25 25 GLN GLN B . n B 1 30 LEU 30 26 26 LEU LEU B . n B 1 31 GLU 31 27 27 GLU GLU B . n B 1 32 VAL 32 28 28 VAL VAL B . n B 1 33 ASN 33 29 29 ASN ASN B . n B 1 34 GLY 34 30 30 GLY GLY B . n B 1 35 SER 35 31 31 SER SER B . n B 1 36 GLN 36 32 32 GLN GLN B . n B 1 37 HIS 37 33 33 HIS HIS B . n B 1 38 SER 38 34 34 SER SER B . n B 1 39 LEU 39 35 35 LEU LEU B . n B 1 40 THR 40 36 36 THR THR B . n B 1 41 CYS 41 37 37 CYS CYS B . n B 1 42 ALA 42 38 38 ALA ALA B . n B 1 43 PHE 43 39 39 PHE PHE B . n B 1 44 GLU 44 40 40 GLU GLU B . n B 1 45 ASP 45 41 41 ASP ASP B . n B 1 46 PRO 46 42 42 PRO PRO B . n B 1 47 ASP 47 43 43 ASP ASP B . n B 1 48 VAL 48 44 44 VAL VAL B . n B 1 49 ASN 49 45 45 ASN ASN B . n B 1 50 THR 50 46 46 THR THR B . n B 1 51 THR 51 47 47 THR THR B . n B 1 52 ASN 52 48 48 ASN ASN B . n B 1 53 LEU 53 49 49 LEU LEU B . n B 1 54 GLU 54 50 50 GLU GLU B . n B 1 55 PHE 55 51 51 PHE PHE B . n B 1 56 GLU 56 52 52 GLU GLU B . n B 1 57 ILE 57 53 53 ILE ILE B . n B 1 58 CYS 58 54 54 CYS CYS B . n B 1 59 GLY 59 55 55 GLY GLY B . n B 1 60 ALA 60 56 56 ALA ALA B . n B 1 61 LEU 61 57 57 LEU LEU B . n B 1 62 VAL 62 58 58 VAL VAL B . n B 1 63 GLU 63 59 59 GLU GLU B . n B 1 64 VAL 64 60 60 VAL VAL B . n B 1 65 LYS 65 61 61 LYS LYS B . n B 1 66 CYS 66 62 62 CYS CYS B . n B 1 67 LEU 67 63 63 LEU LEU B . n B 1 68 ASN 68 64 64 ASN ASN B . n B 1 69 PHE 69 65 65 PHE PHE B . n B 1 70 ARG 70 66 66 ARG ARG B . n B 1 71 LYS 71 67 67 LYS LYS B . n B 1 72 LEU 72 68 68 LEU LEU B . n B 1 73 GLN 73 69 69 GLN GLN B . n B 1 74 GLU 74 70 70 GLU GLU B . n B 1 75 ILE 75 71 71 ILE ILE B . n B 1 76 TYR 76 72 72 TYR TYR B . n B 1 77 PHE 77 73 73 PHE PHE B . n B 1 78 ILE 78 74 74 ILE ILE B . n B 1 79 GLU 79 75 75 GLU GLU B . n B 1 80 THR 80 76 76 THR THR B . n B 1 81 LYS 81 77 77 LYS LYS B . n B 1 82 LYS 82 78 78 LYS LYS B . n B 1 83 PHE 83 79 79 PHE PHE B . n B 1 84 LEU 84 80 80 LEU LEU B . n B 1 85 LEU 85 81 81 LEU LEU B . n B 1 86 ILE 86 82 82 ILE ILE B . n B 1 87 GLY 87 83 83 GLY GLY B . n B 1 88 LYS 88 84 84 LYS LYS B . n B 1 89 SER 89 85 85 SER SER B . n B 1 90 ASN 90 86 86 ASN ASN B . n B 1 91 ILE 91 87 87 ILE ILE B . n B 1 92 CYS 92 88 88 CYS CYS B . n B 1 93 VAL 93 89 89 VAL VAL B . n B 1 94 LYS 94 90 90 LYS LYS B . n B 1 95 VAL 95 91 91 VAL VAL B . n B 1 96 GLY 96 92 92 GLY GLY B . n B 1 97 GLU 97 93 93 GLU GLU B . n B 1 98 LYS 98 94 94 LYS LYS B . n B 1 99 SER 99 95 95 SER SER B . n B 1 100 LEU 100 96 96 LEU LEU B . n B 1 101 THR 101 97 97 THR THR B . n B 1 102 CYS 102 98 98 CYS CYS B . n B 1 103 LYS 103 99 99 LYS LYS B . n B 1 104 LYS 104 100 100 LYS LYS B . n B 1 105 ILE 105 101 101 ILE ILE B . n B 1 106 ASP 106 102 102 ASP ASP B . n B 1 107 LEU 107 103 103 LEU LEU B . n B 1 108 THR 108 104 104 THR THR B . n B 1 109 THR 109 105 105 THR THR B . n B 1 110 ILE 110 106 106 ILE ILE B . n B 1 111 VAL 111 107 107 VAL VAL B . n B 1 112 LYS 112 108 108 LYS LYS B . n B 1 113 PRO 113 109 109 PRO PRO B . n B 1 114 GLU 114 110 110 GLU GLU B . n B 1 115 ALA 115 111 111 ALA ALA B . n B 1 116 PRO 116 112 112 PRO PRO B . n B 1 117 PHE 117 113 113 PHE PHE B . n B 1 118 ASP 118 114 114 ASP ASP B . n B 1 119 LEU 119 115 115 LEU LEU B . n B 1 120 SER 120 116 116 SER SER B . n B 1 121 VAL 121 117 117 VAL VAL B . n B 1 122 VAL 122 118 118 VAL VAL B . n B 1 123 TYR 123 119 119 TYR TYR B . n B 1 124 ARG 124 120 120 ARG ARG B . n B 1 125 GLU 125 121 121 GLU GLU B . n B 1 126 GLY 126 122 122 GLY GLY B . n B 1 127 ALA 127 123 123 ALA ALA B . n B 1 128 ASN 128 124 124 ASN ASN B . n B 1 129 ASP 129 125 125 ASP ASP B . n B 1 130 PHE 130 126 126 PHE PHE B . n B 1 131 VAL 131 127 127 VAL VAL B . n B 1 132 VAL 132 128 128 VAL VAL B . n B 1 133 THR 133 129 129 THR THR B . n B 1 134 PHE 134 130 130 PHE PHE B . n B 1 135 ASN 135 131 131 ASN ASN B . n B 1 136 THR 136 132 132 THR THR B . n B 1 137 SER 137 133 133 SER SER B . n B 1 138 HIS 138 134 134 HIS HIS B . n B 1 139 LEU 139 135 135 LEU LEU B . n B 1 140 GLN 140 136 136 GLN GLN B . n B 1 141 LYS 141 137 137 LYS LYS B . n B 1 142 LYS 142 138 138 LYS LYS B . n B 1 143 TYR 143 139 139 TYR TYR B . n B 1 144 VAL 144 140 140 VAL VAL B . n B 1 145 LYS 145 141 141 LYS LYS B . n B 1 146 VAL 146 142 142 VAL VAL B . n B 1 147 LEU 147 143 143 LEU LEU B . n B 1 148 MET 148 144 144 MET MET B . n B 1 149 HIS 149 145 145 HIS HIS B . n B 1 150 ASP 150 146 146 ASP ASP B . n B 1 151 VAL 151 147 147 VAL VAL B . n B 1 152 ALA 152 148 148 ALA ALA B . n B 1 153 TYR 153 149 149 TYR TYR B . n B 1 154 ARG 154 150 150 ARG ARG B . n B 1 155 GLN 155 151 151 GLN GLN B . n B 1 156 GLU 156 152 152 GLU GLU B . n B 1 157 LYS 157 153 153 LYS LYS B . n B 1 158 ASP 158 154 154 ASP ASP B . n B 1 159 GLU 159 155 155 GLU GLU B . n B 1 160 ASN 160 156 156 ASN ASN B . n B 1 161 LYS 161 157 157 LYS LYS B . n B 1 162 TRP 162 158 158 TRP TRP B . n B 1 163 THR 163 159 159 THR THR B . n B 1 164 HIS 164 160 160 HIS HIS B . n B 1 165 VAL 165 161 161 VAL VAL B . n B 1 166 ASN 166 162 162 ASN ASN B . n B 1 167 LEU 167 163 163 LEU LEU B . n B 1 168 SER 168 164 164 SER SER B . n B 1 169 SER 169 165 165 SER SER B . n B 1 170 THR 170 166 166 THR THR B . n B 1 171 LYS 171 167 167 LYS LYS B . n B 1 172 LEU 172 168 168 LEU LEU B . n B 1 173 THR 173 169 169 THR THR B . n B 1 174 LEU 174 170 170 LEU LEU B . n B 1 175 LEU 175 171 171 LEU LEU B . n B 1 176 GLN 176 172 172 GLN GLN B . n B 1 177 ARG 177 173 173 ARG ARG B . n B 1 178 LYS 178 174 174 LYS LYS B . n B 1 179 LEU 179 175 175 LEU LEU B . n B 1 180 GLN 180 176 176 GLN GLN B . n B 1 181 PRO 181 177 177 PRO PRO B . n B 1 182 ALA 182 178 178 ALA ALA B . n B 1 183 ALA 183 179 179 ALA ALA B . n B 1 184 MET 184 180 180 MET MET B . n B 1 185 TYR 185 181 181 TYR TYR B . n B 1 186 GLU 186 182 182 GLU GLU B . n B 1 187 ILE 187 183 183 ILE ILE B . n B 1 188 LYS 188 184 184 LYS LYS B . n B 1 189 VAL 189 185 185 VAL VAL B . n B 1 190 ARG 190 186 186 ARG ARG B . n B 1 191 SER 191 187 187 SER SER B . n B 1 192 ILE 192 188 188 ILE ILE B . n B 1 193 PRO 193 189 189 PRO PRO B . n B 1 194 ASP 194 190 190 ASP ASP B . n B 1 195 HIS 195 191 191 HIS HIS B . n B 1 196 TYR 196 192 192 TYR TYR B . n B 1 197 PHE 197 193 193 PHE PHE B . n B 1 198 LYS 198 194 194 LYS LYS B . n B 1 199 GLY 199 195 195 GLY GLY B . n B 1 200 PHE 200 196 196 PHE PHE B . n B 1 201 TRP 201 197 197 TRP TRP B . n B 1 202 SER 202 198 198 SER SER B . n B 1 203 GLU 203 199 199 GLU GLU B . n B 1 204 TRP 204 200 200 TRP TRP B . n B 1 205 SER 205 201 201 SER SER B . n B 1 206 PRO 206 202 202 PRO PRO B . n B 1 207 SER 207 203 203 SER SER B . n B 1 208 TYR 208 204 204 TYR TYR B . n B 1 209 TYR 209 205 205 TYR TYR B . n B 1 210 PHE 210 206 206 PHE PHE B . n B 1 211 ARG 211 207 207 ARG ARG B . n B 1 212 THR 212 208 208 THR THR B . n B 1 213 PRO 213 209 209 PRO PRO B . n B 1 214 GLU 214 210 210 GLU GLU B . n B 1 215 ILE 215 211 211 ILE ILE B . n B 1 216 ASN 216 212 ? ? ? B . n B 1 217 ASN 217 213 ? ? ? B . n B 1 218 SER 218 214 ? ? ? B . n B 1 219 SER 219 215 ? ? ? B . n B 1 220 GLY 220 216 ? ? ? B . n B 1 221 GLU 221 217 ? ? ? B . n B 1 222 MET 222 218 ? ? ? B . n B 1 223 ASP 223 219 ? ? ? B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 NAG 1 C NAG 1 F NAG 901 n C 2 NAG 2 C NAG 2 F NAG 903 n D 2 NAG 1 D NAG 1 G NAG 904 n D 2 NAG 2 D NAG 2 G NAG 906 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FUC 1 903 902 FUC FUC A . F 4 SO4 1 904 3 SO4 SO4 A . G 4 SO4 1 905 4 SO4 SO4 A . H 5 GOL 1 906 5 GOL GOL A . I 3 FUC 1 303 905 FUC FUC B . J 6 NGA 1 304 907 NGA NGA B . K 4 SO4 1 305 1 SO4 SO4 B . L 4 SO4 1 306 2 SO4 SO4 B . M 4 SO4 1 307 5 SO4 SO4 B . N 5 GOL 1 308 1 GOL GOL B . O 5 GOL 1 309 2 GOL GOL B . P 5 GOL 1 310 3 GOL GOL B . Q 7 HOH 1 1001 1 HOH HOH A . Q 7 HOH 2 1002 2 HOH HOH A . Q 7 HOH 3 1003 3 HOH HOH A . Q 7 HOH 4 1004 4 HOH HOH A . Q 7 HOH 5 1005 5 HOH HOH A . Q 7 HOH 6 1006 6 HOH HOH A . Q 7 HOH 7 1007 7 HOH HOH A . Q 7 HOH 8 1008 10 HOH HOH A . Q 7 HOH 9 1009 11 HOH HOH A . Q 7 HOH 10 1010 12 HOH HOH A . Q 7 HOH 11 1011 14 HOH HOH A . Q 7 HOH 12 1012 15 HOH HOH A . Q 7 HOH 13 1013 19 HOH HOH A . Q 7 HOH 14 1014 21 HOH HOH A . Q 7 HOH 15 1015 22 HOH HOH A . Q 7 HOH 16 1016 23 HOH HOH A . Q 7 HOH 17 1017 25 HOH HOH A . Q 7 HOH 18 1018 26 HOH HOH A . Q 7 HOH 19 1019 27 HOH HOH A . Q 7 HOH 20 1020 29 HOH HOH A . Q 7 HOH 21 1021 33 HOH HOH A . Q 7 HOH 22 1022 36 HOH HOH A . Q 7 HOH 23 1023 38 HOH HOH A . Q 7 HOH 24 1024 39 HOH HOH A . Q 7 HOH 25 1025 40 HOH HOH A . Q 7 HOH 26 1026 41 HOH HOH A . Q 7 HOH 27 1027 42 HOH HOH A . Q 7 HOH 28 1028 43 HOH HOH A . Q 7 HOH 29 1029 44 HOH HOH A . Q 7 HOH 30 1030 45 HOH HOH A . Q 7 HOH 31 1031 46 HOH HOH A . Q 7 HOH 32 1032 48 HOH HOH A . Q 7 HOH 33 1033 49 HOH HOH A . Q 7 HOH 34 1034 50 HOH HOH A . Q 7 HOH 35 1035 51 HOH HOH A . Q 7 HOH 36 1036 52 HOH HOH A . Q 7 HOH 37 1037 56 HOH HOH A . Q 7 HOH 38 1038 58 HOH HOH A . Q 7 HOH 39 1039 59 HOH HOH A . Q 7 HOH 40 1040 60 HOH HOH A . Q 7 HOH 41 1041 64 HOH HOH A . Q 7 HOH 42 1042 67 HOH HOH A . Q 7 HOH 43 1043 68 HOH HOH A . Q 7 HOH 44 1044 71 HOH HOH A . Q 7 HOH 45 1045 73 HOH HOH A . Q 7 HOH 46 1046 74 HOH HOH A . Q 7 HOH 47 1047 81 HOH HOH A . Q 7 HOH 48 1048 88 HOH HOH A . Q 7 HOH 49 1049 91 HOH HOH A . Q 7 HOH 50 1050 92 HOH HOH A . Q 7 HOH 51 1051 93 HOH HOH A . Q 7 HOH 52 1052 95 HOH HOH A . Q 7 HOH 53 1053 97 HOH HOH A . Q 7 HOH 54 1054 100 HOH HOH A . Q 7 HOH 55 1055 101 HOH HOH A . Q 7 HOH 56 1056 102 HOH HOH A . Q 7 HOH 57 1057 103 HOH HOH A . Q 7 HOH 58 1058 104 HOH HOH A . Q 7 HOH 59 1059 107 HOH HOH A . Q 7 HOH 60 1060 109 HOH HOH A . Q 7 HOH 61 1061 110 HOH HOH A . Q 7 HOH 62 1062 111 HOH HOH A . Q 7 HOH 63 1063 112 HOH HOH A . Q 7 HOH 64 1064 113 HOH HOH A . Q 7 HOH 65 1065 118 HOH HOH A . Q 7 HOH 66 1066 121 HOH HOH A . Q 7 HOH 67 1067 122 HOH HOH A . Q 7 HOH 68 1068 123 HOH HOH A . Q 7 HOH 69 1069 124 HOH HOH A . Q 7 HOH 70 1070 125 HOH HOH A . Q 7 HOH 71 1071 126 HOH HOH A . Q 7 HOH 72 1072 131 HOH HOH A . Q 7 HOH 73 1073 132 HOH HOH A . R 7 HOH 1 401 8 HOH HOH B . R 7 HOH 2 402 9 HOH HOH B . R 7 HOH 3 403 13 HOH HOH B . R 7 HOH 4 404 16 HOH HOH B . R 7 HOH 5 405 17 HOH HOH B . R 7 HOH 6 406 18 HOH HOH B . R 7 HOH 7 407 20 HOH HOH B . R 7 HOH 8 408 24 HOH HOH B . R 7 HOH 9 409 28 HOH HOH B . R 7 HOH 10 410 30 HOH HOH B . R 7 HOH 11 411 31 HOH HOH B . R 7 HOH 12 412 32 HOH HOH B . R 7 HOH 13 413 34 HOH HOH B . R 7 HOH 14 414 35 HOH HOH B . R 7 HOH 15 415 37 HOH HOH B . R 7 HOH 16 416 47 HOH HOH B . R 7 HOH 17 417 53 HOH HOH B . R 7 HOH 18 418 54 HOH HOH B . R 7 HOH 19 419 55 HOH HOH B . R 7 HOH 20 420 57 HOH HOH B . R 7 HOH 21 421 61 HOH HOH B . R 7 HOH 22 422 62 HOH HOH B . R 7 HOH 23 423 63 HOH HOH B . R 7 HOH 24 424 65 HOH HOH B . R 7 HOH 25 425 66 HOH HOH B . R 7 HOH 26 426 69 HOH HOH B . R 7 HOH 27 427 70 HOH HOH B . R 7 HOH 28 428 72 HOH HOH B . R 7 HOH 29 429 75 HOH HOH B . R 7 HOH 30 430 76 HOH HOH B . R 7 HOH 31 431 77 HOH HOH B . R 7 HOH 32 432 78 HOH HOH B . R 7 HOH 33 433 79 HOH HOH B . R 7 HOH 34 434 80 HOH HOH B . R 7 HOH 35 435 82 HOH HOH B . R 7 HOH 36 436 83 HOH HOH B . R 7 HOH 37 437 84 HOH HOH B . R 7 HOH 38 438 85 HOH HOH B . R 7 HOH 39 439 86 HOH HOH B . R 7 HOH 40 440 87 HOH HOH B . R 7 HOH 41 441 89 HOH HOH B . R 7 HOH 42 442 90 HOH HOH B . R 7 HOH 43 443 94 HOH HOH B . R 7 HOH 44 444 96 HOH HOH B . R 7 HOH 45 445 98 HOH HOH B . R 7 HOH 46 446 99 HOH HOH B . R 7 HOH 47 447 105 HOH HOH B . R 7 HOH 48 448 106 HOH HOH B . R 7 HOH 49 449 108 HOH HOH B . R 7 HOH 50 450 114 HOH HOH B . R 7 HOH 51 451 115 HOH HOH B . R 7 HOH 52 452 116 HOH HOH B . R 7 HOH 53 453 117 HOH HOH B . R 7 HOH 54 454 119 HOH HOH B . R 7 HOH 55 455 120 HOH HOH B . R 7 HOH 56 456 127 HOH HOH B . R 7 HOH 57 457 128 HOH HOH B . R 7 HOH 58 458 129 HOH HOH B . R 7 HOH 59 459 130 HOH HOH B . R 7 HOH 60 460 133 HOH HOH B . R 7 HOH 61 461 134 HOH HOH B . R 7 HOH 62 462 135 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 153 ? CG ? A LYS 157 CG 2 1 Y 1 A LYS 153 ? CD ? A LYS 157 CD 3 1 Y 1 A LYS 153 ? CE ? A LYS 157 CE 4 1 Y 1 A LYS 153 ? NZ ? A LYS 157 NZ 5 1 Y 1 A ASN 156 ? CG ? A ASN 160 CG 6 1 Y 1 A ASN 156 ? OD1 ? A ASN 160 OD1 7 1 Y 1 A ASN 156 ? ND2 ? A ASN 160 ND2 8 1 Y 1 B ASP 16 ? CG ? B ASP 20 CG 9 1 Y 1 B ASP 16 ? OD1 ? B ASP 20 OD1 10 1 Y 1 B ASP 16 ? OD2 ? B ASP 20 OD2 11 1 Y 1 B ASN 29 ? CG ? B ASN 33 CG 12 1 Y 1 B ASN 29 ? OD1 ? B ASN 33 OD1 13 1 Y 1 B ASN 29 ? ND2 ? B ASN 33 ND2 14 1 Y 1 B LYS 61 ? CG ? B LYS 65 CG 15 1 Y 1 B LYS 61 ? CD ? B LYS 65 CD 16 1 Y 1 B LYS 61 ? CE ? B LYS 65 CE 17 1 Y 1 B LYS 61 ? NZ ? B LYS 65 NZ 18 1 Y 1 B GLU 121 ? CG ? B GLU 125 CG 19 1 Y 1 B GLU 121 ? CD ? B GLU 125 CD 20 1 Y 1 B GLU 121 ? OE1 ? B GLU 125 OE1 21 1 Y 1 B GLU 121 ? OE2 ? B GLU 125 OE2 22 1 Y 1 B ASP 154 ? CG ? B ASP 158 CG 23 1 Y 1 B ASP 154 ? OD1 ? B ASP 158 OD1 24 1 Y 1 B ASP 154 ? OD2 ? B ASP 158 OD2 25 1 Y 1 B ASN 156 ? CG ? B ASN 160 CG 26 1 Y 1 B ASN 156 ? OD1 ? B ASN 160 OD1 27 1 Y 1 B ASN 156 ? ND2 ? B ASN 160 ND2 28 1 N 1 C NAG 1 ? O1 ? C NAG 1 O1 29 1 N 1 D NAG 1 ? O1 ? D NAG 1 O1 30 1 N 1 A FUC 903 ? O1 ? E FUC 1 O1 31 1 N 1 B FUC 303 ? O1 ? I FUC 1 O1 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.7.2_869 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 EPMR . ? ? ? ? phasing ? ? ? # _cell.entry_id 3UP1 _cell.length_a 81.424 _cell.length_b 101.259 _cell.length_c 151.994 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UP1 _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3UP1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.05 _exptl_crystal.density_percent_sol 59.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '1.26M (NH4)2SO4, 0.1 M Tris-HCl pH 8.5, 0.2 M Li2SO4, VAPOR DIFFUSION, SITTING DROP, temperature 292K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-11-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03337 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-D _diffrn_source.pdbx_wavelength 1.03337 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3UP1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.150 _reflns.number_obs 34331 _reflns.number_all ? _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.700 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3UP1 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 34199 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 14.93 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.214 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.700 _refine.ls_number_reflns_R_free 2634 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 3.31140 _refine.aniso_B[2][2] -2.81080 _refine.aniso_B[3][3] -0.50060 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] -0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.36 _refine.solvent_model_param_bsol 39.51 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.790 _refine.pdbx_overall_phase_error 28.040 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3227 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 139 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 3501 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 14.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 3460 'X-RAY DIFFRACTION' ? f_angle_d 1.240 ? ? 4677 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.078 ? ? 1284 'X-RAY DIFFRACTION' ? f_chiral_restr 0.086 ? ? 531 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 569 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.1500 2.1890 1574 0.5972 95.00 0.6045 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.1890 2.2310 1623 0.5064 97.00 0.4702 . . 126 . . . . 'X-RAY DIFFRACTION' . 2.2310 2.2764 1612 0.4378 97.00 0.4996 . . 122 . . . . 'X-RAY DIFFRACTION' . 2.2764 2.3257 1650 0.3910 99.00 0.4838 . . 136 . . . . 'X-RAY DIFFRACTION' . 2.3257 2.3796 1612 0.3422 99.00 0.4728 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.3796 2.4388 1650 0.2737 100.00 0.3469 . . 140 . . . . 'X-RAY DIFFRACTION' . 2.4388 2.5045 1659 0.2444 100.00 0.3253 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.5045 2.5778 1630 0.2293 100.00 0.3525 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.5778 2.6606 1680 0.2264 100.00 0.2659 . . 125 . . . . 'X-RAY DIFFRACTION' . 2.6606 2.7551 1670 0.2412 100.00 0.2397 . . 128 . . . . 'X-RAY DIFFRACTION' . 2.7551 2.8646 1665 0.2382 100.00 0.2844 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.8646 2.9940 1664 0.2297 100.00 0.3161 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.9940 3.1505 1649 0.2364 100.00 0.2801 . . 156 . . . . 'X-RAY DIFFRACTION' . 3.1505 3.3458 1683 0.2235 100.00 0.2981 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.3458 3.6008 1676 0.2027 100.00 0.2398 . . 140 . . . . 'X-RAY DIFFRACTION' . 3.6008 3.9570 1698 0.1701 100.00 0.2062 . . 129 . . . . 'X-RAY DIFFRACTION' . 3.9570 4.5156 1683 0.1476 100.00 0.1729 . . 148 . . . . 'X-RAY DIFFRACTION' . 4.5156 5.6378 1721 0.1428 100.00 0.1795 . . 155 . . . . 'X-RAY DIFFRACTION' . 5.6378 14.9269 1766 0.1937 100.00 0.2216 . . 147 . . . . # _struct.entry_id 3UP1 _struct.title 'Crystal structure of the unliganded human interleukin-7 receptor extracellular domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UP1 _struct_keywords.text 'cytokine receptor, fibronectin type 3 fold, membrane and soluble, glycosylation, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 3 ? J N N 6 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 7 ? R N N 7 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code IL7RA_HUMAN _struct_ref.pdbx_db_accession P16871 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ESGYAQNGDLEDAELDDYSFSCYSQLEVNGSQHSLTCAFEDPDVNTTNLEFEICGALVEVKCLNFRKLQEIYFIETKKFL LIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVIYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTH VNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSSGEMD ; _struct_ref.pdbx_align_begin 21 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UP1 A 5 ? 223 ? P16871 21 ? 239 ? 1 219 2 1 3UP1 B 5 ? 223 ? P16871 21 ? 239 ? 1 219 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UP1 GLY A 1 ? UNP P16871 ? ? 'expression tag' -3 1 1 3UP1 SER A 2 ? UNP P16871 ? ? 'expression tag' -2 2 1 3UP1 HIS A 3 ? UNP P16871 ? ? 'expression tag' -1 3 1 3UP1 MET A 4 ? UNP P16871 ? ? 'expression tag' 0 4 1 3UP1 VAL A 122 ? UNP P16871 ILE 138 variant 118 5 2 3UP1 GLY B 1 ? UNP P16871 ? ? 'expression tag' -3 6 2 3UP1 SER B 2 ? UNP P16871 ? ? 'expression tag' -2 7 2 3UP1 HIS B 3 ? UNP P16871 ? ? 'expression tag' -1 8 2 3UP1 MET B 4 ? UNP P16871 ? ? 'expression tag' 0 9 2 3UP1 VAL B 122 ? UNP P16871 ILE 138 variant 118 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3890 ? 1 MORE -58 ? 1 'SSA (A^2)' 22950 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 18 ? TYR A 22 ? GLU A 14 TYR A 18 5 ? 5 HELX_P HELX_P2 2 THR A 108 ? ILE A 110 ? THR A 104 ILE A 106 5 ? 3 HELX_P HELX_P3 3 THR A 136 ? LYS A 141 ? THR A 132 LYS A 137 5 ? 6 HELX_P HELX_P4 4 ARG A 177 ? LEU A 179 ? ARG A 173 LEU A 175 5 ? 3 HELX_P HELX_P5 5 ASP B 106 ? ILE B 110 ? ASP B 102 ILE B 106 5 ? 5 HELX_P HELX_P6 6 HIS B 138 ? TYR B 143 ? HIS B 134 TYR B 139 1 ? 6 HELX_P HELX_P7 7 ARG B 177 ? LEU B 179 ? ARG B 173 LEU B 175 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 22 A CYS 37 1_555 ? ? ? ? ? ? ? 2.057 ? ? disulf2 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 66 SG ? ? A CYS 54 A CYS 62 1_555 ? ? ? ? ? ? ? 2.054 ? ? disulf3 disulf ? ? A CYS 92 SG ? ? ? 1_555 A CYS 102 SG ? ? A CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf4 disulf ? ? B CYS 26 SG ? ? ? 1_555 B CYS 41 SG ? ? B CYS 22 B CYS 37 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf5 disulf ? ? B CYS 58 SG ? ? ? 1_555 B CYS 66 SG ? ? B CYS 54 B CYS 62 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf6 disulf ? ? B CYS 92 SG ? ? ? 1_555 B CYS 102 SG ? ? B CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? 2.039 ? ? covale1 covale one ? B SER 137 OG ? ? ? 1_555 J NGA . C1 ? ? B SER 133 B NGA 304 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale2 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.454 ? ? covale3 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.446 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NGA J . ? SER B 137 ? NGA B 304 ? 1_555 SER B 133 ? 1_555 C1 OG SER 3 NGA None Carbohydrate 2 CYS A 26 ? CYS A 41 ? CYS A 22 ? 1_555 CYS A 37 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 58 ? CYS A 66 ? CYS A 54 ? 1_555 CYS A 62 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 92 ? CYS A 102 ? CYS A 88 ? 1_555 CYS A 98 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 26 ? CYS B 41 ? CYS B 22 ? 1_555 CYS B 37 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 58 ? CYS B 66 ? CYS B 54 ? 1_555 CYS B 62 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS B 92 ? CYS B 102 ? CYS B 88 ? 1_555 CYS B 98 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 3 ? D ? 4 ? E ? 4 ? F ? 4 ? G ? 3 ? H ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 24 ? ASN A 33 ? PHE A 20 ASN A 29 A 2 GLN A 36 ? PHE A 43 ? GLN A 32 PHE A 39 A 3 ILE A 75 ? THR A 80 ? ILE A 71 THR A 76 A 4 ARG A 70 ? LEU A 72 ? ARG A 66 LEU A 68 B 1 CYS A 66 ? ASN A 68 ? CYS A 62 ASN A 64 B 2 LEU A 53 ? CYS A 58 ? LEU A 49 CYS A 54 B 3 LYS A 88 ? VAL A 95 ? LYS A 84 VAL A 91 B 4 LYS A 98 ? ASP A 106 ? LYS A 94 ASP A 102 C 1 PHE A 117 ? ARG A 124 ? PHE A 113 ARG A 120 C 2 ASP A 129 ? ASN A 135 ? ASP A 125 ASN A 131 C 3 LYS A 171 ? LEU A 175 ? LYS A 167 LEU A 171 D 1 THR A 163 ? LEU A 167 ? THR A 159 LEU A 163 D 2 LEU A 147 ? GLN A 155 ? LEU A 143 GLN A 151 D 3 MET A 184 ? PRO A 193 ? MET A 180 PRO A 189 D 4 TYR A 208 ? ARG A 211 ? TYR A 204 ARG A 207 E 1 PHE B 24 ? ASN B 33 ? PHE B 20 ASN B 29 E 2 GLN B 36 ? PHE B 43 ? GLN B 32 PHE B 39 E 3 ILE B 75 ? THR B 80 ? ILE B 71 THR B 76 E 4 ARG B 70 ? LEU B 72 ? ARG B 66 LEU B 68 F 1 CYS B 66 ? ASN B 68 ? CYS B 62 ASN B 64 F 2 GLU B 54 ? CYS B 58 ? GLU B 50 CYS B 54 F 3 SER B 89 ? VAL B 95 ? SER B 85 VAL B 91 F 4 LYS B 98 ? ILE B 105 ? LYS B 94 ILE B 101 G 1 PHE B 117 ? ARG B 124 ? PHE B 113 ARG B 120 G 2 ASP B 129 ? ASN B 135 ? ASP B 125 ASN B 131 G 3 LYS B 171 ? LEU B 175 ? LYS B 167 LEU B 171 H 1 THR B 163 ? LEU B 167 ? THR B 159 LEU B 163 H 2 LEU B 147 ? GLN B 155 ? LEU B 143 GLN B 151 H 3 MET B 184 ? PRO B 193 ? MET B 180 PRO B 189 H 4 TYR B 208 ? ARG B 211 ? TYR B 204 ARG B 207 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 27 ? N TYR A 23 O THR A 40 ? O THR A 36 A 2 3 N CYS A 41 ? N CYS A 37 O TYR A 76 ? O TYR A 72 A 3 4 O ILE A 75 ? O ILE A 71 N LEU A 72 ? N LEU A 68 B 1 2 O LEU A 67 ? O LEU A 63 N ILE A 57 ? N ILE A 53 B 2 3 N CYS A 58 ? N CYS A 54 O ASN A 90 ? O ASN A 86 B 3 4 N SER A 89 ? N SER A 85 O ILE A 105 ? O ILE A 101 C 1 2 N ARG A 124 ? N ARG A 120 O ASP A 129 ? O ASP A 125 C 2 3 N PHE A 130 ? N PHE A 126 O LEU A 174 ? O LEU A 170 D 1 2 O LEU A 167 ? O LEU A 163 N HIS A 149 ? N HIS A 145 D 2 3 N ARG A 154 ? N ARG A 150 O GLU A 186 ? O GLU A 182 D 3 4 N TYR A 185 ? N TYR A 181 O PHE A 210 ? O PHE A 206 E 1 2 N TYR B 27 ? N TYR B 23 O THR B 40 ? O THR B 36 E 2 3 N HIS B 37 ? N HIS B 33 O THR B 80 ? O THR B 76 E 3 4 O ILE B 75 ? O ILE B 71 N LEU B 72 ? N LEU B 68 F 1 2 O LEU B 67 ? O LEU B 63 N ILE B 57 ? N ILE B 53 F 2 3 N CYS B 58 ? N CYS B 54 O ASN B 90 ? O ASN B 86 F 3 4 N SER B 89 ? N SER B 85 O ILE B 105 ? O ILE B 101 G 1 2 N PHE B 117 ? N PHE B 113 O ASN B 135 ? O ASN B 131 G 2 3 N VAL B 132 ? N VAL B 128 O LEU B 172 ? O LEU B 168 H 1 2 O LEU B 167 ? O LEU B 163 N HIS B 149 ? N HIS B 145 H 2 3 N ALA B 152 ? N ALA B 148 O LYS B 188 ? O LYS B 184 H 3 4 N ILE B 187 ? N ILE B 183 O TYR B 208 ? O TYR B 204 # _pdbx_entry_details.entry_id 3UP1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND2 A ASN 131 ? ? C1 C NAG 1 ? ? 1.71 2 1 ND2 B ASN 131 ? ? C1 D NAG 1 ? ? 1.95 3 1 CG2 B VAL 142 ? ? C8 B NGA 304 ? ? 2.09 4 1 O4 B NGA 304 ? ? O B HOH 438 ? ? 2.11 5 1 CB B SER 133 ? ? O5 B NGA 304 ? ? 2.17 6 1 OG B SER 133 ? ? O5 B NGA 304 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 59 ? ? 68.42 -19.40 2 1 GLN A 69 ? ? 54.47 78.14 3 1 GLU A 70 ? ? 69.30 -10.32 4 1 TYR A 139 ? ? -99.30 -75.42 5 1 LYS A 157 ? ? 93.18 -164.62 6 1 TYR A 192 ? ? 71.29 -59.58 7 1 ASN B 29 ? ? -154.91 74.23 8 1 VAL B 60 ? ? -177.61 143.88 9 1 GLU B 70 ? ? 74.41 -2.60 10 1 ASP B 154 ? ? 82.97 -62.63 11 1 TYR B 192 ? ? 70.87 -65.83 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 156 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LYS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 157 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 147.12 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id SER _pdbx_struct_mod_residue.label_seq_id 137 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id SER _pdbx_struct_mod_residue.auth_seq_id 133 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 1056 ? Q HOH . 2 1 A HOH 1057 ? Q HOH . # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 44.5496 15.9318 51.0651 0.2831 0.1690 0.2260 -0.0550 -0.0307 -0.0450 2.4211 2.6827 2.5128 -0.3850 0.4485 1.5505 -0.1317 -0.1870 -0.0330 -0.0075 -0.1306 0.2739 0.0257 -0.2241 0.2183 'X-RAY DIFFRACTION' 2 ? refined 54.8300 37.1663 72.5353 0.2555 0.1763 0.1415 -0.0556 0.0084 -0.0380 2.3109 3.4678 1.3194 0.9812 0.6548 0.4755 0.0154 -0.1456 0.0569 0.0263 -0.0058 0.1815 -0.2399 0.0313 -0.0041 'X-RAY DIFFRACTION' 3 ? refined 62.1800 43.8543 33.4318 0.3683 0.2197 0.2581 -0.0031 0.0506 0.0019 3.8788 2.7472 2.7388 2.6633 0.7066 1.2303 0.3877 -0.3297 0.2205 0.5648 -0.3534 0.1760 0.0855 -0.1107 -0.0211 'X-RAY DIFFRACTION' 4 ? refined 51.5579 20.4381 14.5609 0.1926 0.3098 0.2003 -0.0634 -0.0014 0.0500 0.6396 3.9127 4.4931 -0.0237 -0.6513 2.3099 0.1444 0.0993 0.0168 -0.0191 0.0091 -0.1584 0.0368 -0.3547 -0.1673 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resid 12:107)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain A and resid 108:212)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain B and resid 16:102)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain B and resid 103:211)' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A MET 0 ? A MET 4 5 1 Y 1 A GLU 1 ? A GLU 5 6 1 Y 1 A SER 2 ? A SER 6 7 1 Y 1 A GLY 3 ? A GLY 7 8 1 Y 1 A TYR 4 ? A TYR 8 9 1 Y 1 A ALA 5 ? A ALA 9 10 1 Y 1 A GLN 6 ? A GLN 10 11 1 Y 1 A ASN 7 ? A ASN 11 12 1 Y 1 A GLY 8 ? A GLY 12 13 1 Y 1 A ASP 9 ? A ASP 13 14 1 Y 1 A LEU 10 ? A LEU 14 15 1 Y 1 A GLU 11 ? A GLU 15 16 1 Y 1 A ASN 213 ? A ASN 217 17 1 Y 1 A SER 214 ? A SER 218 18 1 Y 1 A SER 215 ? A SER 219 19 1 Y 1 A GLY 216 ? A GLY 220 20 1 Y 1 A GLU 217 ? A GLU 221 21 1 Y 1 A MET 218 ? A MET 222 22 1 Y 1 A ASP 219 ? A ASP 223 23 1 Y 1 B GLY -3 ? B GLY 1 24 1 Y 1 B SER -2 ? B SER 2 25 1 Y 1 B HIS -1 ? B HIS 3 26 1 Y 1 B MET 0 ? B MET 4 27 1 Y 1 B GLU 1 ? B GLU 5 28 1 Y 1 B SER 2 ? B SER 6 29 1 Y 1 B GLY 3 ? B GLY 7 30 1 Y 1 B TYR 4 ? B TYR 8 31 1 Y 1 B ALA 5 ? B ALA 9 32 1 Y 1 B GLN 6 ? B GLN 10 33 1 Y 1 B ASN 7 ? B ASN 11 34 1 Y 1 B GLY 8 ? B GLY 12 35 1 Y 1 B ASP 9 ? B ASP 13 36 1 Y 1 B LEU 10 ? B LEU 14 37 1 Y 1 B GLU 11 ? B GLU 15 38 1 Y 1 B ASP 12 ? B ASP 16 39 1 Y 1 B ALA 13 ? B ALA 17 40 1 Y 1 B GLU 14 ? B GLU 18 41 1 Y 1 B LEU 15 ? B LEU 19 42 1 Y 1 B ASN 212 ? B ASN 216 43 1 Y 1 B ASN 213 ? B ASN 217 44 1 Y 1 B SER 214 ? B SER 218 45 1 Y 1 B SER 215 ? B SER 219 46 1 Y 1 B GLY 216 ? B GLY 220 47 1 Y 1 B GLU 217 ? B GLU 221 48 1 Y 1 B MET 218 ? B MET 222 49 1 Y 1 B ASP 219 ? B ASP 223 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FUC C1 C N R 88 FUC C2 C N S 89 FUC C3 C N R 90 FUC C4 C N S 91 FUC C5 C N S 92 FUC C6 C N N 93 FUC O1 O N N 94 FUC O2 O N N 95 FUC O3 O N N 96 FUC O4 O N N 97 FUC O5 O N N 98 FUC H1 H N N 99 FUC H2 H N N 100 FUC H3 H N N 101 FUC H4 H N N 102 FUC H5 H N N 103 FUC H61 H N N 104 FUC H62 H N N 105 FUC H63 H N N 106 FUC HO1 H N N 107 FUC HO2 H N N 108 FUC HO3 H N N 109 FUC HO4 H N N 110 GLN N N N N 111 GLN CA C N S 112 GLN C C N N 113 GLN O O N N 114 GLN CB C N N 115 GLN CG C N N 116 GLN CD C N N 117 GLN OE1 O N N 118 GLN NE2 N N N 119 GLN OXT O N N 120 GLN H H N N 121 GLN H2 H N N 122 GLN HA H N N 123 GLN HB2 H N N 124 GLN HB3 H N N 125 GLN HG2 H N N 126 GLN HG3 H N N 127 GLN HE21 H N N 128 GLN HE22 H N N 129 GLN HXT H N N 130 GLU N N N N 131 GLU CA C N S 132 GLU C C N N 133 GLU O O N N 134 GLU CB C N N 135 GLU CG C N N 136 GLU CD C N N 137 GLU OE1 O N N 138 GLU OE2 O N N 139 GLU OXT O N N 140 GLU H H N N 141 GLU H2 H N N 142 GLU HA H N N 143 GLU HB2 H N N 144 GLU HB3 H N N 145 GLU HG2 H N N 146 GLU HG3 H N N 147 GLU HE2 H N N 148 GLU HXT H N N 149 GLY N N N N 150 GLY CA C N N 151 GLY C C N N 152 GLY O O N N 153 GLY OXT O N N 154 GLY H H N N 155 GLY H2 H N N 156 GLY HA2 H N N 157 GLY HA3 H N N 158 GLY HXT H N N 159 GOL C1 C N N 160 GOL O1 O N N 161 GOL C2 C N N 162 GOL O2 O N N 163 GOL C3 C N N 164 GOL O3 O N N 165 GOL H11 H N N 166 GOL H12 H N N 167 GOL HO1 H N N 168 GOL H2 H N N 169 GOL HO2 H N N 170 GOL H31 H N N 171 GOL H32 H N N 172 GOL HO3 H N N 173 HIS N N N N 174 HIS CA C N S 175 HIS C C N N 176 HIS O O N N 177 HIS CB C N N 178 HIS CG C Y N 179 HIS ND1 N Y N 180 HIS CD2 C Y N 181 HIS CE1 C Y N 182 HIS NE2 N Y N 183 HIS OXT O N N 184 HIS H H N N 185 HIS H2 H N N 186 HIS HA H N N 187 HIS HB2 H N N 188 HIS HB3 H N N 189 HIS HD1 H N N 190 HIS HD2 H N N 191 HIS HE1 H N N 192 HIS HE2 H N N 193 HIS HXT H N N 194 HOH O O N N 195 HOH H1 H N N 196 HOH H2 H N N 197 ILE N N N N 198 ILE CA C N S 199 ILE C C N N 200 ILE O O N N 201 ILE CB C N S 202 ILE CG1 C N N 203 ILE CG2 C N N 204 ILE CD1 C N N 205 ILE OXT O N N 206 ILE H H N N 207 ILE H2 H N N 208 ILE HA H N N 209 ILE HB H N N 210 ILE HG12 H N N 211 ILE HG13 H N N 212 ILE HG21 H N N 213 ILE HG22 H N N 214 ILE HG23 H N N 215 ILE HD11 H N N 216 ILE HD12 H N N 217 ILE HD13 H N N 218 ILE HXT H N N 219 LEU N N N N 220 LEU CA C N S 221 LEU C C N N 222 LEU O O N N 223 LEU CB C N N 224 LEU CG C N N 225 LEU CD1 C N N 226 LEU CD2 C N N 227 LEU OXT O N N 228 LEU H H N N 229 LEU H2 H N N 230 LEU HA H N N 231 LEU HB2 H N N 232 LEU HB3 H N N 233 LEU HG H N N 234 LEU HD11 H N N 235 LEU HD12 H N N 236 LEU HD13 H N N 237 LEU HD21 H N N 238 LEU HD22 H N N 239 LEU HD23 H N N 240 LEU HXT H N N 241 LYS N N N N 242 LYS CA C N S 243 LYS C C N N 244 LYS O O N N 245 LYS CB C N N 246 LYS CG C N N 247 LYS CD C N N 248 LYS CE C N N 249 LYS NZ N N N 250 LYS OXT O N N 251 LYS H H N N 252 LYS H2 H N N 253 LYS HA H N N 254 LYS HB2 H N N 255 LYS HB3 H N N 256 LYS HG2 H N N 257 LYS HG3 H N N 258 LYS HD2 H N N 259 LYS HD3 H N N 260 LYS HE2 H N N 261 LYS HE3 H N N 262 LYS HZ1 H N N 263 LYS HZ2 H N N 264 LYS HZ3 H N N 265 LYS HXT H N N 266 MET N N N N 267 MET CA C N S 268 MET C C N N 269 MET O O N N 270 MET CB C N N 271 MET CG C N N 272 MET SD S N N 273 MET CE C N N 274 MET OXT O N N 275 MET H H N N 276 MET H2 H N N 277 MET HA H N N 278 MET HB2 H N N 279 MET HB3 H N N 280 MET HG2 H N N 281 MET HG3 H N N 282 MET HE1 H N N 283 MET HE2 H N N 284 MET HE3 H N N 285 MET HXT H N N 286 NAG C1 C N R 287 NAG C2 C N R 288 NAG C3 C N R 289 NAG C4 C N S 290 NAG C5 C N R 291 NAG C6 C N N 292 NAG C7 C N N 293 NAG C8 C N N 294 NAG N2 N N N 295 NAG O1 O N N 296 NAG O3 O N N 297 NAG O4 O N N 298 NAG O5 O N N 299 NAG O6 O N N 300 NAG O7 O N N 301 NAG H1 H N N 302 NAG H2 H N N 303 NAG H3 H N N 304 NAG H4 H N N 305 NAG H5 H N N 306 NAG H61 H N N 307 NAG H62 H N N 308 NAG H81 H N N 309 NAG H82 H N N 310 NAG H83 H N N 311 NAG HN2 H N N 312 NAG HO1 H N N 313 NAG HO3 H N N 314 NAG HO4 H N N 315 NAG HO6 H N N 316 NGA C1 C N R 317 NGA C2 C N R 318 NGA C3 C N R 319 NGA C4 C N R 320 NGA C5 C N R 321 NGA C6 C N N 322 NGA C7 C N N 323 NGA C8 C N N 324 NGA N2 N N N 325 NGA O1 O N N 326 NGA O3 O N N 327 NGA O4 O N N 328 NGA O5 O N N 329 NGA O6 O N N 330 NGA O7 O N N 331 NGA H1 H N N 332 NGA H2 H N N 333 NGA H3 H N N 334 NGA H4 H N N 335 NGA H5 H N N 336 NGA H61 H N N 337 NGA H62 H N N 338 NGA H81 H N N 339 NGA H82 H N N 340 NGA H83 H N N 341 NGA HN2 H N N 342 NGA HO1 H N N 343 NGA HO3 H N N 344 NGA HO4 H N N 345 NGA HO6 H N N 346 PHE N N N N 347 PHE CA C N S 348 PHE C C N N 349 PHE O O N N 350 PHE CB C N N 351 PHE CG C Y N 352 PHE CD1 C Y N 353 PHE CD2 C Y N 354 PHE CE1 C Y N 355 PHE CE2 C Y N 356 PHE CZ C Y N 357 PHE OXT O N N 358 PHE H H N N 359 PHE H2 H N N 360 PHE HA H N N 361 PHE HB2 H N N 362 PHE HB3 H N N 363 PHE HD1 H N N 364 PHE HD2 H N N 365 PHE HE1 H N N 366 PHE HE2 H N N 367 PHE HZ H N N 368 PHE HXT H N N 369 PRO N N N N 370 PRO CA C N S 371 PRO C C N N 372 PRO O O N N 373 PRO CB C N N 374 PRO CG C N N 375 PRO CD C N N 376 PRO OXT O N N 377 PRO H H N N 378 PRO HA H N N 379 PRO HB2 H N N 380 PRO HB3 H N N 381 PRO HG2 H N N 382 PRO HG3 H N N 383 PRO HD2 H N N 384 PRO HD3 H N N 385 PRO HXT H N N 386 SER N N N N 387 SER CA C N S 388 SER C C N N 389 SER O O N N 390 SER CB C N N 391 SER OG O N N 392 SER OXT O N N 393 SER H H N N 394 SER H2 H N N 395 SER HA H N N 396 SER HB2 H N N 397 SER HB3 H N N 398 SER HG H N N 399 SER HXT H N N 400 SO4 S S N N 401 SO4 O1 O N N 402 SO4 O2 O N N 403 SO4 O3 O N N 404 SO4 O4 O N N 405 THR N N N N 406 THR CA C N S 407 THR C C N N 408 THR O O N N 409 THR CB C N R 410 THR OG1 O N N 411 THR CG2 C N N 412 THR OXT O N N 413 THR H H N N 414 THR H2 H N N 415 THR HA H N N 416 THR HB H N N 417 THR HG1 H N N 418 THR HG21 H N N 419 THR HG22 H N N 420 THR HG23 H N N 421 THR HXT H N N 422 TRP N N N N 423 TRP CA C N S 424 TRP C C N N 425 TRP O O N N 426 TRP CB C N N 427 TRP CG C Y N 428 TRP CD1 C Y N 429 TRP CD2 C Y N 430 TRP NE1 N Y N 431 TRP CE2 C Y N 432 TRP CE3 C Y N 433 TRP CZ2 C Y N 434 TRP CZ3 C Y N 435 TRP CH2 C Y N 436 TRP OXT O N N 437 TRP H H N N 438 TRP H2 H N N 439 TRP HA H N N 440 TRP HB2 H N N 441 TRP HB3 H N N 442 TRP HD1 H N N 443 TRP HE1 H N N 444 TRP HE3 H N N 445 TRP HZ2 H N N 446 TRP HZ3 H N N 447 TRP HH2 H N N 448 TRP HXT H N N 449 TYR N N N N 450 TYR CA C N S 451 TYR C C N N 452 TYR O O N N 453 TYR CB C N N 454 TYR CG C Y N 455 TYR CD1 C Y N 456 TYR CD2 C Y N 457 TYR CE1 C Y N 458 TYR CE2 C Y N 459 TYR CZ C Y N 460 TYR OH O N N 461 TYR OXT O N N 462 TYR H H N N 463 TYR H2 H N N 464 TYR HA H N N 465 TYR HB2 H N N 466 TYR HB3 H N N 467 TYR HD1 H N N 468 TYR HD2 H N N 469 TYR HE1 H N N 470 TYR HE2 H N N 471 TYR HH H N N 472 TYR HXT H N N 473 VAL N N N N 474 VAL CA C N S 475 VAL C C N N 476 VAL O O N N 477 VAL CB C N N 478 VAL CG1 C N N 479 VAL CG2 C N N 480 VAL OXT O N N 481 VAL H H N N 482 VAL H2 H N N 483 VAL HA H N N 484 VAL HB H N N 485 VAL HG11 H N N 486 VAL HG12 H N N 487 VAL HG13 H N N 488 VAL HG21 H N N 489 VAL HG22 H N N 490 VAL HG23 H N N 491 VAL HXT H N N 492 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FUC C1 C2 sing N N 83 FUC C1 O1 sing N N 84 FUC C1 O5 sing N N 85 FUC C1 H1 sing N N 86 FUC C2 C3 sing N N 87 FUC C2 O2 sing N N 88 FUC C2 H2 sing N N 89 FUC C3 C4 sing N N 90 FUC C3 O3 sing N N 91 FUC C3 H3 sing N N 92 FUC C4 C5 sing N N 93 FUC C4 O4 sing N N 94 FUC C4 H4 sing N N 95 FUC C5 C6 sing N N 96 FUC C5 O5 sing N N 97 FUC C5 H5 sing N N 98 FUC C6 H61 sing N N 99 FUC C6 H62 sing N N 100 FUC C6 H63 sing N N 101 FUC O1 HO1 sing N N 102 FUC O2 HO2 sing N N 103 FUC O3 HO3 sing N N 104 FUC O4 HO4 sing N N 105 GLN N CA sing N N 106 GLN N H sing N N 107 GLN N H2 sing N N 108 GLN CA C sing N N 109 GLN CA CB sing N N 110 GLN CA HA sing N N 111 GLN C O doub N N 112 GLN C OXT sing N N 113 GLN CB CG sing N N 114 GLN CB HB2 sing N N 115 GLN CB HB3 sing N N 116 GLN CG CD sing N N 117 GLN CG HG2 sing N N 118 GLN CG HG3 sing N N 119 GLN CD OE1 doub N N 120 GLN CD NE2 sing N N 121 GLN NE2 HE21 sing N N 122 GLN NE2 HE22 sing N N 123 GLN OXT HXT sing N N 124 GLU N CA sing N N 125 GLU N H sing N N 126 GLU N H2 sing N N 127 GLU CA C sing N N 128 GLU CA CB sing N N 129 GLU CA HA sing N N 130 GLU C O doub N N 131 GLU C OXT sing N N 132 GLU CB CG sing N N 133 GLU CB HB2 sing N N 134 GLU CB HB3 sing N N 135 GLU CG CD sing N N 136 GLU CG HG2 sing N N 137 GLU CG HG3 sing N N 138 GLU CD OE1 doub N N 139 GLU CD OE2 sing N N 140 GLU OE2 HE2 sing N N 141 GLU OXT HXT sing N N 142 GLY N CA sing N N 143 GLY N H sing N N 144 GLY N H2 sing N N 145 GLY CA C sing N N 146 GLY CA HA2 sing N N 147 GLY CA HA3 sing N N 148 GLY C O doub N N 149 GLY C OXT sing N N 150 GLY OXT HXT sing N N 151 GOL C1 O1 sing N N 152 GOL C1 C2 sing N N 153 GOL C1 H11 sing N N 154 GOL C1 H12 sing N N 155 GOL O1 HO1 sing N N 156 GOL C2 O2 sing N N 157 GOL C2 C3 sing N N 158 GOL C2 H2 sing N N 159 GOL O2 HO2 sing N N 160 GOL C3 O3 sing N N 161 GOL C3 H31 sing N N 162 GOL C3 H32 sing N N 163 GOL O3 HO3 sing N N 164 HIS N CA sing N N 165 HIS N H sing N N 166 HIS N H2 sing N N 167 HIS CA C sing N N 168 HIS CA CB sing N N 169 HIS CA HA sing N N 170 HIS C O doub N N 171 HIS C OXT sing N N 172 HIS CB CG sing N N 173 HIS CB HB2 sing N N 174 HIS CB HB3 sing N N 175 HIS CG ND1 sing Y N 176 HIS CG CD2 doub Y N 177 HIS ND1 CE1 doub Y N 178 HIS ND1 HD1 sing N N 179 HIS CD2 NE2 sing Y N 180 HIS CD2 HD2 sing N N 181 HIS CE1 NE2 sing Y N 182 HIS CE1 HE1 sing N N 183 HIS NE2 HE2 sing N N 184 HIS OXT HXT sing N N 185 HOH O H1 sing N N 186 HOH O H2 sing N N 187 ILE N CA sing N N 188 ILE N H sing N N 189 ILE N H2 sing N N 190 ILE CA C sing N N 191 ILE CA CB sing N N 192 ILE CA HA sing N N 193 ILE C O doub N N 194 ILE C OXT sing N N 195 ILE CB CG1 sing N N 196 ILE CB CG2 sing N N 197 ILE CB HB sing N N 198 ILE CG1 CD1 sing N N 199 ILE CG1 HG12 sing N N 200 ILE CG1 HG13 sing N N 201 ILE CG2 HG21 sing N N 202 ILE CG2 HG22 sing N N 203 ILE CG2 HG23 sing N N 204 ILE CD1 HD11 sing N N 205 ILE CD1 HD12 sing N N 206 ILE CD1 HD13 sing N N 207 ILE OXT HXT sing N N 208 LEU N CA sing N N 209 LEU N H sing N N 210 LEU N H2 sing N N 211 LEU CA C sing N N 212 LEU CA CB sing N N 213 LEU CA HA sing N N 214 LEU C O doub N N 215 LEU C OXT sing N N 216 LEU CB CG sing N N 217 LEU CB HB2 sing N N 218 LEU CB HB3 sing N N 219 LEU CG CD1 sing N N 220 LEU CG CD2 sing N N 221 LEU CG HG sing N N 222 LEU CD1 HD11 sing N N 223 LEU CD1 HD12 sing N N 224 LEU CD1 HD13 sing N N 225 LEU CD2 HD21 sing N N 226 LEU CD2 HD22 sing N N 227 LEU CD2 HD23 sing N N 228 LEU OXT HXT sing N N 229 LYS N CA sing N N 230 LYS N H sing N N 231 LYS N H2 sing N N 232 LYS CA C sing N N 233 LYS CA CB sing N N 234 LYS CA HA sing N N 235 LYS C O doub N N 236 LYS C OXT sing N N 237 LYS CB CG sing N N 238 LYS CB HB2 sing N N 239 LYS CB HB3 sing N N 240 LYS CG CD sing N N 241 LYS CG HG2 sing N N 242 LYS CG HG3 sing N N 243 LYS CD CE sing N N 244 LYS CD HD2 sing N N 245 LYS CD HD3 sing N N 246 LYS CE NZ sing N N 247 LYS CE HE2 sing N N 248 LYS CE HE3 sing N N 249 LYS NZ HZ1 sing N N 250 LYS NZ HZ2 sing N N 251 LYS NZ HZ3 sing N N 252 LYS OXT HXT sing N N 253 MET N CA sing N N 254 MET N H sing N N 255 MET N H2 sing N N 256 MET CA C sing N N 257 MET CA CB sing N N 258 MET CA HA sing N N 259 MET C O doub N N 260 MET C OXT sing N N 261 MET CB CG sing N N 262 MET CB HB2 sing N N 263 MET CB HB3 sing N N 264 MET CG SD sing N N 265 MET CG HG2 sing N N 266 MET CG HG3 sing N N 267 MET SD CE sing N N 268 MET CE HE1 sing N N 269 MET CE HE2 sing N N 270 MET CE HE3 sing N N 271 MET OXT HXT sing N N 272 NAG C1 C2 sing N N 273 NAG C1 O1 sing N N 274 NAG C1 O5 sing N N 275 NAG C1 H1 sing N N 276 NAG C2 C3 sing N N 277 NAG C2 N2 sing N N 278 NAG C2 H2 sing N N 279 NAG C3 C4 sing N N 280 NAG C3 O3 sing N N 281 NAG C3 H3 sing N N 282 NAG C4 C5 sing N N 283 NAG C4 O4 sing N N 284 NAG C4 H4 sing N N 285 NAG C5 C6 sing N N 286 NAG C5 O5 sing N N 287 NAG C5 H5 sing N N 288 NAG C6 O6 sing N N 289 NAG C6 H61 sing N N 290 NAG C6 H62 sing N N 291 NAG C7 C8 sing N N 292 NAG C7 N2 sing N N 293 NAG C7 O7 doub N N 294 NAG C8 H81 sing N N 295 NAG C8 H82 sing N N 296 NAG C8 H83 sing N N 297 NAG N2 HN2 sing N N 298 NAG O1 HO1 sing N N 299 NAG O3 HO3 sing N N 300 NAG O4 HO4 sing N N 301 NAG O6 HO6 sing N N 302 NGA C1 C2 sing N N 303 NGA C1 O1 sing N N 304 NGA C1 O5 sing N N 305 NGA C1 H1 sing N N 306 NGA C2 C3 sing N N 307 NGA C2 N2 sing N N 308 NGA C2 H2 sing N N 309 NGA C3 C4 sing N N 310 NGA C3 O3 sing N N 311 NGA C3 H3 sing N N 312 NGA C4 C5 sing N N 313 NGA C4 O4 sing N N 314 NGA C4 H4 sing N N 315 NGA C5 C6 sing N N 316 NGA C5 O5 sing N N 317 NGA C5 H5 sing N N 318 NGA C6 O6 sing N N 319 NGA C6 H61 sing N N 320 NGA C6 H62 sing N N 321 NGA C7 C8 sing N N 322 NGA C7 N2 sing N N 323 NGA C7 O7 doub N N 324 NGA C8 H81 sing N N 325 NGA C8 H82 sing N N 326 NGA C8 H83 sing N N 327 NGA N2 HN2 sing N N 328 NGA O1 HO1 sing N N 329 NGA O3 HO3 sing N N 330 NGA O4 HO4 sing N N 331 NGA O6 HO6 sing N N 332 PHE N CA sing N N 333 PHE N H sing N N 334 PHE N H2 sing N N 335 PHE CA C sing N N 336 PHE CA CB sing N N 337 PHE CA HA sing N N 338 PHE C O doub N N 339 PHE C OXT sing N N 340 PHE CB CG sing N N 341 PHE CB HB2 sing N N 342 PHE CB HB3 sing N N 343 PHE CG CD1 doub Y N 344 PHE CG CD2 sing Y N 345 PHE CD1 CE1 sing Y N 346 PHE CD1 HD1 sing N N 347 PHE CD2 CE2 doub Y N 348 PHE CD2 HD2 sing N N 349 PHE CE1 CZ doub Y N 350 PHE CE1 HE1 sing N N 351 PHE CE2 CZ sing Y N 352 PHE CE2 HE2 sing N N 353 PHE CZ HZ sing N N 354 PHE OXT HXT sing N N 355 PRO N CA sing N N 356 PRO N CD sing N N 357 PRO N H sing N N 358 PRO CA C sing N N 359 PRO CA CB sing N N 360 PRO CA HA sing N N 361 PRO C O doub N N 362 PRO C OXT sing N N 363 PRO CB CG sing N N 364 PRO CB HB2 sing N N 365 PRO CB HB3 sing N N 366 PRO CG CD sing N N 367 PRO CG HG2 sing N N 368 PRO CG HG3 sing N N 369 PRO CD HD2 sing N N 370 PRO CD HD3 sing N N 371 PRO OXT HXT sing N N 372 SER N CA sing N N 373 SER N H sing N N 374 SER N H2 sing N N 375 SER CA C sing N N 376 SER CA CB sing N N 377 SER CA HA sing N N 378 SER C O doub N N 379 SER C OXT sing N N 380 SER CB OG sing N N 381 SER CB HB2 sing N N 382 SER CB HB3 sing N N 383 SER OG HG sing N N 384 SER OXT HXT sing N N 385 SO4 S O1 doub N N 386 SO4 S O2 doub N N 387 SO4 S O3 sing N N 388 SO4 S O4 sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 VAL N CA sing N N 458 VAL N H sing N N 459 VAL N H2 sing N N 460 VAL CA C sing N N 461 VAL CA CB sing N N 462 VAL CA HA sing N N 463 VAL C O doub N N 464 VAL C OXT sing N N 465 VAL CB CG1 sing N N 466 VAL CB CG2 sing N N 467 VAL CB HB sing N N 468 VAL CG1 HG11 sing N N 469 VAL CG1 HG12 sing N N 470 VAL CG1 HG13 sing N N 471 VAL CG2 HG21 sing N N 472 VAL CG2 HG22 sing N N 473 VAL CG2 HG23 sing N N 474 VAL OXT HXT sing N N 475 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # _atom_sites.entry_id 3UP1 _atom_sites.fract_transf_matrix[1][1] 0.012281 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009876 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006579 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ # loop_ #