HEADER IMMUNE SYSTEM 17-NOV-11 3UP1 TITLE CRYSTAL STRUCTURE OF THE UNLIGANDED HUMAN INTERLEUKIN-7 RECEPTOR TITLE 2 EXTRACELLULAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-7 RECEPTOR SUBUNIT ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IL-7 RECEPTOR SUBUNIT ALPHA, IL-7R SUBUNIT ALPHA, IL-7R- COMPND 5 ALPHA, IL-7RA, CDW127; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL7R; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32281; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SCHNEIDER S2 INSECT CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMT-BIPA KEYWDS CYTOKINE RECEPTOR, FIBRONECTIN TYPE 3 FOLD, MEMBRANE AND SOLUBLE, KEYWDS 2 GLYCOSYLATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.A.MCELROY,P.J.HOLLAND,S.T.R.WALSH REVDAT 4 21-DEC-22 3UP1 1 SEQADV HETSYN REVDAT 3 29-JUL-20 3UP1 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 22-AUG-12 3UP1 1 JRNL REVDAT 1 08-FEB-12 3UP1 0 JRNL AUTH C.A.MCELROY,P.J.HOLLAND,P.ZHAO,J.M.LIM,L.WELLS,E.EISENSTEIN, JRNL AUTH 2 S.T.WALSH JRNL TITL STRUCTURAL REORGANIZATION OF THE INTERLEUKIN-7 SIGNALING JRNL TITL 2 COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 2503 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22308406 JRNL DOI 10.1073/PNAS.1116582109 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9269 - 5.6378 1.00 1766 147 0.1937 0.2216 REMARK 3 2 5.6378 - 4.5156 1.00 1721 155 0.1428 0.1795 REMARK 3 3 4.5156 - 3.9570 1.00 1683 148 0.1476 0.1729 REMARK 3 4 3.9570 - 3.6008 1.00 1698 129 0.1701 0.2062 REMARK 3 5 3.6008 - 3.3458 1.00 1676 140 0.2027 0.2398 REMARK 3 6 3.3458 - 3.1505 1.00 1683 137 0.2235 0.2981 REMARK 3 7 3.1505 - 2.9940 1.00 1649 156 0.2364 0.2801 REMARK 3 8 2.9940 - 2.8646 1.00 1664 144 0.2297 0.3161 REMARK 3 9 2.8646 - 2.7551 1.00 1665 143 0.2382 0.2844 REMARK 3 10 2.7551 - 2.6606 1.00 1670 128 0.2412 0.2397 REMARK 3 11 2.6606 - 2.5778 1.00 1680 125 0.2264 0.2659 REMARK 3 12 2.5778 - 2.5045 1.00 1630 147 0.2293 0.3525 REMARK 3 13 2.5045 - 2.4388 1.00 1659 142 0.2444 0.3253 REMARK 3 14 2.4388 - 2.3796 1.00 1650 140 0.2737 0.3469 REMARK 3 15 2.3796 - 2.3257 0.99 1612 143 0.3422 0.4728 REMARK 3 16 2.3257 - 2.2764 0.99 1650 136 0.3910 0.4838 REMARK 3 17 2.2764 - 2.2310 0.97 1612 122 0.4378 0.4996 REMARK 3 18 2.2310 - 2.1890 0.97 1623 126 0.5064 0.4702 REMARK 3 19 2.1890 - 2.1500 0.95 1574 126 0.5972 0.6045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 39.51 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.790 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.31140 REMARK 3 B22 (A**2) : -2.81080 REMARK 3 B33 (A**2) : -0.50060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3460 REMARK 3 ANGLE : 1.240 4677 REMARK 3 CHIRALITY : 0.086 531 REMARK 3 PLANARITY : 0.004 569 REMARK 3 DIHEDRAL : 16.078 1284 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 12:107) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5496 15.9318 51.0651 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 0.1690 REMARK 3 T33: 0.2260 T12: -0.0550 REMARK 3 T13: -0.0307 T23: -0.0450 REMARK 3 L TENSOR REMARK 3 L11: 2.4211 L22: 2.6827 REMARK 3 L33: 2.5128 L12: -0.3850 REMARK 3 L13: 0.4485 L23: 1.5505 REMARK 3 S TENSOR REMARK 3 S11: -0.1317 S12: -0.1870 S13: -0.0330 REMARK 3 S21: -0.0075 S22: -0.1306 S23: 0.2739 REMARK 3 S31: 0.0257 S32: -0.2241 S33: 0.2183 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 108:212) REMARK 3 ORIGIN FOR THE GROUP (A): 54.8300 37.1663 72.5353 REMARK 3 T TENSOR REMARK 3 T11: 0.2555 T22: 0.1763 REMARK 3 T33: 0.1415 T12: -0.0556 REMARK 3 T13: 0.0084 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 2.3109 L22: 3.4678 REMARK 3 L33: 1.3194 L12: 0.9812 REMARK 3 L13: 0.6548 L23: 0.4755 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.1456 S13: 0.0569 REMARK 3 S21: 0.0263 S22: -0.0058 S23: 0.1815 REMARK 3 S31: -0.2399 S32: 0.0313 S33: -0.0041 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 16:102) REMARK 3 ORIGIN FOR THE GROUP (A): 62.1800 43.8543 33.4318 REMARK 3 T TENSOR REMARK 3 T11: 0.3683 T22: 0.2197 REMARK 3 T33: 0.2581 T12: -0.0031 REMARK 3 T13: 0.0506 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.8788 L22: 2.7472 REMARK 3 L33: 2.7388 L12: 2.6633 REMARK 3 L13: 0.7066 L23: 1.2303 REMARK 3 S TENSOR REMARK 3 S11: 0.3877 S12: -0.3297 S13: 0.2205 REMARK 3 S21: 0.5648 S22: -0.3534 S23: 0.1760 REMARK 3 S31: 0.0855 S32: -0.1107 S33: -0.0211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 103:211) REMARK 3 ORIGIN FOR THE GROUP (A): 51.5579 20.4381 14.5609 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.3098 REMARK 3 T33: 0.2003 T12: -0.0634 REMARK 3 T13: -0.0014 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 0.6396 L22: 3.9127 REMARK 3 L33: 4.4931 L12: -0.0237 REMARK 3 L13: -0.6513 L23: 2.3099 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: 0.0993 S13: 0.0168 REMARK 3 S21: -0.0191 S22: 0.0091 S23: -0.1584 REMARK 3 S31: 0.0368 S32: -0.3547 S33: -0.1673 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03337 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26M (NH4)2SO4, 0.1 M TRIS-HCL PH REMARK 280 8.5, 0.2 M LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.71200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.62950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.99700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.71200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.62950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.99700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.71200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.62950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.99700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.71200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.62950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.99700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1056 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1057 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLU A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 TYR A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 ASN A 213 REMARK 465 SER A 214 REMARK 465 SER A 215 REMARK 465 GLY A 216 REMARK 465 GLU A 217 REMARK 465 MET A 218 REMARK 465 ASP A 219 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLU B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 TYR B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 ASN B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 ASP B 12 REMARK 465 ALA B 13 REMARK 465 GLU B 14 REMARK 465 LEU B 15 REMARK 465 ASN B 212 REMARK 465 ASN B 213 REMARK 465 SER B 214 REMARK 465 SER B 215 REMARK 465 GLY B 216 REMARK 465 GLU B 217 REMARK 465 MET B 218 REMARK 465 ASP B 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 ASN A 156 CG OD1 ND2 REMARK 470 ASP B 16 CG OD1 OD2 REMARK 470 ASN B 29 CG OD1 ND2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 ASN B 156 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 131 C1 NAG C 1 1.71 REMARK 500 ND2 ASN B 131 C1 NAG D 1 1.95 REMARK 500 CG2 VAL B 142 C8 NGA B 304 2.09 REMARK 500 O4 NGA B 304 O HOH B 438 2.11 REMARK 500 CB SER B 133 O5 NGA B 304 2.17 REMARK 500 OG SER B 133 O5 NGA B 304 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 59 -19.40 68.42 REMARK 500 GLN A 69 78.14 54.47 REMARK 500 GLU A 70 -10.32 69.30 REMARK 500 TYR A 139 -75.42 -99.30 REMARK 500 LYS A 157 -164.62 93.18 REMARK 500 TYR A 192 -59.58 71.29 REMARK 500 ASN B 29 74.23 -154.91 REMARK 500 VAL B 60 143.88 -177.61 REMARK 500 GLU B 70 -2.60 74.41 REMARK 500 ASP B 154 -62.63 82.97 REMARK 500 TYR B 192 -65.83 70.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 156 LYS A 157 147.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG C 1 REMARK 610 NAG D 1 REMARK 610 FUC A 903 REMARK 610 FUC B 303 DBREF 3UP1 A 1 219 UNP P16871 IL7RA_HUMAN 21 239 DBREF 3UP1 B 1 219 UNP P16871 IL7RA_HUMAN 21 239 SEQADV 3UP1 GLY A -3 UNP P16871 EXPRESSION TAG SEQADV 3UP1 SER A -2 UNP P16871 EXPRESSION TAG SEQADV 3UP1 HIS A -1 UNP P16871 EXPRESSION TAG SEQADV 3UP1 MET A 0 UNP P16871 EXPRESSION TAG SEQADV 3UP1 VAL A 118 UNP P16871 ILE 138 VARIANT SEQADV 3UP1 GLY B -3 UNP P16871 EXPRESSION TAG SEQADV 3UP1 SER B -2 UNP P16871 EXPRESSION TAG SEQADV 3UP1 HIS B -1 UNP P16871 EXPRESSION TAG SEQADV 3UP1 MET B 0 UNP P16871 EXPRESSION TAG SEQADV 3UP1 VAL B 118 UNP P16871 ILE 138 VARIANT SEQRES 1 A 223 GLY SER HIS MET GLU SER GLY TYR ALA GLN ASN GLY ASP SEQRES 2 A 223 LEU GLU ASP ALA GLU LEU ASP ASP TYR SER PHE SER CYS SEQRES 3 A 223 TYR SER GLN LEU GLU VAL ASN GLY SER GLN HIS SER LEU SEQRES 4 A 223 THR CYS ALA PHE GLU ASP PRO ASP VAL ASN THR THR ASN SEQRES 5 A 223 LEU GLU PHE GLU ILE CYS GLY ALA LEU VAL GLU VAL LYS SEQRES 6 A 223 CYS LEU ASN PHE ARG LYS LEU GLN GLU ILE TYR PHE ILE SEQRES 7 A 223 GLU THR LYS LYS PHE LEU LEU ILE GLY LYS SER ASN ILE SEQRES 8 A 223 CYS VAL LYS VAL GLY GLU LYS SER LEU THR CYS LYS LYS SEQRES 9 A 223 ILE ASP LEU THR THR ILE VAL LYS PRO GLU ALA PRO PHE SEQRES 10 A 223 ASP LEU SER VAL VAL TYR ARG GLU GLY ALA ASN ASP PHE SEQRES 11 A 223 VAL VAL THR PHE ASN THR SER HIS LEU GLN LYS LYS TYR SEQRES 12 A 223 VAL LYS VAL LEU MET HIS ASP VAL ALA TYR ARG GLN GLU SEQRES 13 A 223 LYS ASP GLU ASN LYS TRP THR HIS VAL ASN LEU SER SER SEQRES 14 A 223 THR LYS LEU THR LEU LEU GLN ARG LYS LEU GLN PRO ALA SEQRES 15 A 223 ALA MET TYR GLU ILE LYS VAL ARG SER ILE PRO ASP HIS SEQRES 16 A 223 TYR PHE LYS GLY PHE TRP SER GLU TRP SER PRO SER TYR SEQRES 17 A 223 TYR PHE ARG THR PRO GLU ILE ASN ASN SER SER GLY GLU SEQRES 18 A 223 MET ASP SEQRES 1 B 223 GLY SER HIS MET GLU SER GLY TYR ALA GLN ASN GLY ASP SEQRES 2 B 223 LEU GLU ASP ALA GLU LEU ASP ASP TYR SER PHE SER CYS SEQRES 3 B 223 TYR SER GLN LEU GLU VAL ASN GLY SER GLN HIS SER LEU SEQRES 4 B 223 THR CYS ALA PHE GLU ASP PRO ASP VAL ASN THR THR ASN SEQRES 5 B 223 LEU GLU PHE GLU ILE CYS GLY ALA LEU VAL GLU VAL LYS SEQRES 6 B 223 CYS LEU ASN PHE ARG LYS LEU GLN GLU ILE TYR PHE ILE SEQRES 7 B 223 GLU THR LYS LYS PHE LEU LEU ILE GLY LYS SER ASN ILE SEQRES 8 B 223 CYS VAL LYS VAL GLY GLU LYS SER LEU THR CYS LYS LYS SEQRES 9 B 223 ILE ASP LEU THR THR ILE VAL LYS PRO GLU ALA PRO PHE SEQRES 10 B 223 ASP LEU SER VAL VAL TYR ARG GLU GLY ALA ASN ASP PHE SEQRES 11 B 223 VAL VAL THR PHE ASN THR SER HIS LEU GLN LYS LYS TYR SEQRES 12 B 223 VAL LYS VAL LEU MET HIS ASP VAL ALA TYR ARG GLN GLU SEQRES 13 B 223 LYS ASP GLU ASN LYS TRP THR HIS VAL ASN LEU SER SER SEQRES 14 B 223 THR LYS LEU THR LEU LEU GLN ARG LYS LEU GLN PRO ALA SEQRES 15 B 223 ALA MET TYR GLU ILE LYS VAL ARG SER ILE PRO ASP HIS SEQRES 16 B 223 TYR PHE LYS GLY PHE TRP SER GLU TRP SER PRO SER TYR SEQRES 17 B 223 TYR PHE ARG THR PRO GLU ILE ASN ASN SER SER GLY GLU SEQRES 18 B 223 MET ASP MODRES 3UP1 SER B 133 SER GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET FUC A 903 10 HET SO4 A 904 5 HET SO4 A 905 5 HET GOL A 906 6 HET FUC B 303 10 HET NGA B 304 14 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HET GOL B 308 6 HET GOL B 309 6 HET GOL B 310 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 FUC 2(C6 H12 O5) FORMUL 6 SO4 5(O4 S 2-) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 10 NGA C8 H15 N O6 FORMUL 17 HOH *135(H2 O) HELIX 1 1 GLU A 14 TYR A 18 5 5 HELIX 2 2 THR A 104 ILE A 106 5 3 HELIX 3 3 THR A 132 LYS A 137 5 6 HELIX 4 4 ARG A 173 LEU A 175 5 3 HELIX 5 5 ASP B 102 ILE B 106 5 5 HELIX 6 6 HIS B 134 TYR B 139 1 6 HELIX 7 7 ARG B 173 LEU B 175 5 3 SHEET 1 A 4 PHE A 20 ASN A 29 0 SHEET 2 A 4 GLN A 32 PHE A 39 -1 O THR A 36 N TYR A 23 SHEET 3 A 4 ILE A 71 THR A 76 -1 O TYR A 72 N CYS A 37 SHEET 4 A 4 ARG A 66 LEU A 68 -1 N LEU A 68 O ILE A 71 SHEET 1 B 4 CYS A 62 ASN A 64 0 SHEET 2 B 4 LEU A 49 CYS A 54 -1 N ILE A 53 O LEU A 63 SHEET 3 B 4 LYS A 84 VAL A 91 -1 O ASN A 86 N CYS A 54 SHEET 4 B 4 LYS A 94 ASP A 102 -1 O ILE A 101 N SER A 85 SHEET 1 C 3 PHE A 113 ARG A 120 0 SHEET 2 C 3 ASP A 125 ASN A 131 -1 O ASP A 125 N ARG A 120 SHEET 3 C 3 LYS A 167 LEU A 171 -1 O LEU A 170 N PHE A 126 SHEET 1 D 4 THR A 159 LEU A 163 0 SHEET 2 D 4 LEU A 143 GLN A 151 -1 N HIS A 145 O LEU A 163 SHEET 3 D 4 MET A 180 PRO A 189 -1 O GLU A 182 N ARG A 150 SHEET 4 D 4 TYR A 204 ARG A 207 -1 O PHE A 206 N TYR A 181 SHEET 1 E 4 PHE B 20 ASN B 29 0 SHEET 2 E 4 GLN B 32 PHE B 39 -1 O THR B 36 N TYR B 23 SHEET 3 E 4 ILE B 71 THR B 76 -1 O THR B 76 N HIS B 33 SHEET 4 E 4 ARG B 66 LEU B 68 -1 N LEU B 68 O ILE B 71 SHEET 1 F 4 CYS B 62 ASN B 64 0 SHEET 2 F 4 GLU B 50 CYS B 54 -1 N ILE B 53 O LEU B 63 SHEET 3 F 4 SER B 85 VAL B 91 -1 O ASN B 86 N CYS B 54 SHEET 4 F 4 LYS B 94 ILE B 101 -1 O ILE B 101 N SER B 85 SHEET 1 G 3 PHE B 113 ARG B 120 0 SHEET 2 G 3 ASP B 125 ASN B 131 -1 O ASN B 131 N PHE B 113 SHEET 3 G 3 LYS B 167 LEU B 171 -1 O LEU B 168 N VAL B 128 SHEET 1 H 4 THR B 159 LEU B 163 0 SHEET 2 H 4 LEU B 143 GLN B 151 -1 N HIS B 145 O LEU B 163 SHEET 3 H 4 MET B 180 PRO B 189 -1 O LYS B 184 N ALA B 148 SHEET 4 H 4 TYR B 204 ARG B 207 -1 O TYR B 204 N ILE B 183 SSBOND 1 CYS A 22 CYS A 37 1555 1555 2.06 SSBOND 2 CYS A 54 CYS A 62 1555 1555 2.05 SSBOND 3 CYS A 88 CYS A 98 1555 1555 2.06 SSBOND 4 CYS B 22 CYS B 37 1555 1555 2.04 SSBOND 5 CYS B 54 CYS B 62 1555 1555 2.03 SSBOND 6 CYS B 88 CYS B 98 1555 1555 2.04 LINK OG SER B 133 C1 NGA B 304 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 CRYST1 81.424 101.259 151.994 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006579 0.00000