HEADER TRANSFERASE/TRANSFERASE INHIBITOR 18-NOV-11 3UPX TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH INHIBITOR UW1300 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CALMODULIN-DOMAIN PROTEIN KINASE, PUTATIVE; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: AAG53993, CDPK1, TGGT1_059880, TGVEG_042030; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT,E.T.LARSON REVDAT 3 28-FEB-24 3UPX 1 REMARK SEQADV REVDAT 2 18-APR-12 3UPX 1 JRNL REVDAT 1 14-MAR-12 3UPX 0 JRNL AUTH E.T.LARSON,K.K.OJO,R.C.MURPHY,S.M.JOHNSON,Z.ZHANG,J.E.KIM, JRNL AUTH 2 D.J.LEIBLY,A.M.FOX,M.C.REID,E.J.DALE,B.G.PERERA,J.KIM, JRNL AUTH 3 S.N.HEWITT,W.G.HOL,C.L.VERLINDE,E.FAN,W.C.VAN VOORHIS, JRNL AUTH 4 D.J.MALY,E.A.MERRITT JRNL TITL MULTIPLE DETERMINANTS FOR SELECTIVE INHIBITION OF JRNL TITL 2 APICOMPLEXAN CALCIUM-DEPENDENT PROTEIN KINASE CDPK1. JRNL REF J.MED.CHEM. V. 55 2803 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22369268 JRNL DOI 10.1021/JM201725V REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.M.J.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.J.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 20436472 REMARK 1 DOI 10.1038/NSMB.1818 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, REMARK 1 AUTH 2 B.G.K.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.MULLER, REMARK 1 AUTH 3 C.L.M.J.VERLINDE,S.H.NAKAZAWA,W.G.J.HOL,F.S.BUCKNER, REMARK 1 AUTH 4 A.J.NAPULI,C.A.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY REMARK 1 TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF REMARK 1 TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM C. PARVUM REMARK 1 TITL 3 AND T. GONDII REMARK 1 REF ACS MED.CHEM.LETT. V. 1 331 2010 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 21116453 REMARK 1 DOI 10.1021/ML100096T REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 20868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.68000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3614 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2468 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4870 ; 1.093 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6003 ; 0.816 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 5.170 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;36.471 ;24.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 668 ;14.529 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.128 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3985 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8100 14.7550 40.2710 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.0506 REMARK 3 T33: 0.0694 T12: -0.0326 REMARK 3 T13: -0.0520 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 4.7642 L22: 5.0992 REMARK 3 L33: 4.1015 L12: -1.3328 REMARK 3 L13: 1.0336 L23: -1.8790 REMARK 3 S TENSOR REMARK 3 S11: -0.1123 S12: -0.0633 S13: 0.1904 REMARK 3 S21: 0.3779 S22: 0.0266 S23: -0.1122 REMARK 3 S31: -0.3416 S32: 0.0739 S33: 0.0857 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4490 13.0230 24.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0156 REMARK 3 T33: 0.1286 T12: 0.0104 REMARK 3 T13: -0.0018 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.9331 L22: 1.6368 REMARK 3 L33: 3.7805 L12: -0.0024 REMARK 3 L13: 0.2881 L23: -0.9523 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0141 S13: -0.0593 REMARK 3 S21: -0.0379 S22: -0.0516 S23: -0.1971 REMARK 3 S31: 0.0332 S32: 0.2084 S33: 0.0552 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5830 20.6540 8.4080 REMARK 3 T TENSOR REMARK 3 T11: 0.0775 T22: 0.0903 REMARK 3 T33: 0.0124 T12: 0.0296 REMARK 3 T13: 0.0182 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.7042 L22: 2.6481 REMARK 3 L33: 2.1645 L12: 0.3941 REMARK 3 L13: -0.0528 L23: -0.0248 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: 0.3673 S13: -0.0245 REMARK 3 S21: -0.3761 S22: -0.0394 S23: -0.1142 REMARK 3 S31: 0.1836 S32: 0.1440 S33: 0.0925 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7020 33.4980 36.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.2487 T22: 0.2062 REMARK 3 T33: 0.1890 T12: 0.0493 REMARK 3 T13: -0.0649 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.2263 L22: 4.1840 REMARK 3 L33: 35.8797 L12: -0.6669 REMARK 3 L13: -2.6864 L23: 10.8555 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: 0.0653 S13: -0.0240 REMARK 3 S21: 0.4897 S22: -0.1238 S23: -0.1062 REMARK 3 S31: 0.1656 S32: -0.8084 S33: 0.0622 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 364 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): 36.9900 27.4830 53.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.5486 T22: 0.3281 REMARK 3 T33: 0.3718 T12: 0.0342 REMARK 3 T13: -0.1775 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.8796 L22: 10.0105 REMARK 3 L33: 2.0562 L12: -1.2382 REMARK 3 L13: -1.7437 L23: 0.8538 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: 0.2156 S13: -0.1837 REMARK 3 S21: 0.3129 S22: -0.0175 S23: -0.1627 REMARK 3 S31: 0.1968 S32: -0.1544 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 40.2310 36.5360 21.8810 REMARK 3 T TENSOR REMARK 3 T11: 0.0479 T22: 0.0284 REMARK 3 T33: 0.1246 T12: -0.0032 REMARK 3 T13: -0.0045 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 9.7832 L22: 4.2258 REMARK 3 L33: 6.9592 L12: -3.2385 REMARK 3 L13: -2.9604 L23: 2.6822 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: 0.0098 S13: 0.4888 REMARK 3 S21: 0.0788 S22: 0.1422 S23: -0.1354 REMARK 3 S31: -0.4108 S32: 0.0655 S33: -0.2501 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3UPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20869 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.271 REMARK 200 RESOLUTION RANGE LOW (A) : 39.743 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : 0.61500 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3350, 0.275 M AMMONIUM REMARK 280 CITRATE, 5 MM DTT, 2 MM UW1300, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.46500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 MET A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 GLU A 314 REMARK 465 GLN A 315 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 465 ASP A 319 REMARK 465 MET A 390 REMARK 465 LYS A 391 REMARK 465 GLY A 392 REMARK 465 GLN A 393 REMARK 465 ALA A 413 REMARK 465 VAL A 414 REMARK 465 ASP A 415 REMARK 465 PHE A 416 REMARK 465 ASP A 417 REMARK 465 LYS A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 TYR A 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ASP A 188 CG OD1 OD2 REMARK 470 LYS A 266 CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 ILE A 422 CG1 CG2 CD1 REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 486 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -15.80 75.59 REMARK 500 ASP A 107 116.11 -160.73 REMARK 500 SER A 142 54.00 -100.84 REMARK 500 LYS A 169 30.96 70.47 REMARK 500 ARG A 173 -35.59 75.76 REMARK 500 LYS A 187 -72.22 -71.08 REMARK 500 ASP A 433 -36.08 -39.59 REMARK 500 ASP A 473 136.34 -39.57 REMARK 500 ASN A 488 -61.84 71.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B6A A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UPZ RELATED DB: PDB REMARK 900 RELATED ID: 3UQF RELATED DB: PDB REMARK 900 RELATED ID: 3UQG RELATED DB: PDB REMARK 900 RELATED ID: 3V51 RELATED DB: PDB REMARK 900 RELATED ID: 3V5P RELATED DB: PDB REMARK 900 RELATED ID: 3V5T RELATED DB: PDB DBREF 3UPX A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 3UPX GLY A 24 UNP Q9BJF5 EXPRESSION TAG SEQADV 3UPX PRO A 25 UNP Q9BJF5 EXPRESSION TAG SEQADV 3UPX GLY A 26 UNP Q9BJF5 EXPRESSION TAG SEQADV 3UPX SER A 27 UNP Q9BJF5 EXPRESSION TAG SEQADV 3UPX MET A 28 UNP Q9BJF5 EXPRESSION TAG SEQADV 3UPX MET A 29 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET B6A A 1 25 HETNAM B6A [2-AMINO-1-(PIPERIDIN-4-YLMETHYL)-1H-BENZIMIDAZOL-6- HETNAM 2 B6A YL](PHENYL)METHANONE FORMUL 2 B6A C20 H22 N4 O FORMUL 3 HOH *36(H2 O) HELIX 1 1 ILE A 46 ARG A 50 1 5 HELIX 2 2 ASP A 92 LEU A 106 1 15 HELIX 3 3 GLU A 135 ILE A 141 1 7 HELIX 4 4 SER A 147 ASN A 168 1 22 HELIX 5 5 LYS A 176 GLU A 178 5 3 HELIX 6 6 LYS A 207 LYS A 211 5 5 HELIX 7 7 ALA A 219 GLY A 225 1 7 HELIX 8 8 GLU A 229 GLY A 246 1 18 HELIX 9 9 ASN A 254 GLY A 265 1 12 HELIX 10 10 LEU A 271 VAL A 277 5 7 HELIX 11 11 SER A 278 LEU A 289 1 12 HELIX 12 12 SER A 298 ASP A 304 1 7 HELIX 13 13 HIS A 305 LYS A 313 1 9 HELIX 14 14 LEU A 323 ASP A 368 1 46 HELIX 15 15 ASP A 376 MET A 388 1 13 HELIX 16 16 ASP A 399 ASP A 412 1 14 HELIX 17 17 GLU A 423 ASP A 451 1 29 HELIX 18 18 SER A 460 SER A 470 1 11 HELIX 19 19 ASP A 473 ASP A 485 1 13 HELIX 20 20 ASP A 493 LEU A 504 1 12 SHEET 1 A 5 TYR A 51 GLY A 60 0 SHEET 2 A 5 GLY A 63 ASP A 70 -1 O LEU A 67 N GLN A 54 SHEET 3 A 5 GLU A 76 SER A 83 -1 O VAL A 79 N ILE A 66 SHEET 4 A 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N PHE A 118 O TYR A 125 SHEET 1 B 2 LEU A 180 LEU A 182 0 SHEET 2 B 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 C 2 ILE A 458 SER A 459 0 SHEET 2 C 2 GLU A 491 VAL A 492 -1 O VAL A 492 N ILE A 458 SITE 1 AC1 12 LEU A 57 VAL A 65 ALA A 78 LYS A 80 SITE 2 AC1 12 MET A 112 LEU A 126 GLU A 129 TYR A 131 SITE 3 AC1 12 GLU A 135 LEU A 181 ILE A 194 ASP A 195 CRYST1 48.290 72.930 66.920 90.00 101.02 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020708 0.000000 0.004033 0.00000 SCALE2 0.000000 0.013712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015224 0.00000