HEADER TRANSFERASE 20-NOV-11 3UQC TITLE STRUCTURE OF THE INTRACELLULAR KINASE HOMOLOGY DOMAIN OF RV3910 AT 2.2 TITLE 2 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE CONSERVED TRANSMEMBRANE PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 678-963; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MT4029, RV3910; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KINASE KEYWDS 2 FOLD, FHAA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ALBER,C.L.GEE,S.R.BLAIR,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 4 13-SEP-23 3UQC 1 REMARK REVDAT 3 17-JUL-19 3UQC 1 REMARK REVDAT 2 08-NOV-17 3UQC 1 REMARK REVDAT 1 08-FEB-12 3UQC 0 JRNL AUTH C.L.GEE,K.G.PAPAVINASASUNDARAM,S.R.BLAIR,C.E.BAER, JRNL AUTH 2 A.M.FALICK,D.S.KING,J.E.GRIFFIN,H.VENGHATAKRISHNAN, JRNL AUTH 3 A.ZUKAUSKAS,J.R.WEI,R.K.DHIMAN,D.C.CRICK,E.J.RUBIN, JRNL AUTH 4 C.M.SASSETTI,T.ALBER JRNL TITL A PHOSPHORYLATED PSEUDOKINASE COMPLEX CONTROLS CELL WALL JRNL TITL 2 SYNTHESIS IN MYCOBACTERIA. JRNL REF SCI.SIGNAL. V. 5 RA7 2012 JRNL REFN ESSN 1937-9145 JRNL PMID 22275220 JRNL DOI 10.1126/SCISIGNAL.2002525 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 46003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8876 - 5.7977 1.00 2669 153 0.1728 0.1962 REMARK 3 2 5.7977 - 4.6030 1.00 2604 140 0.1756 0.2050 REMARK 3 3 4.6030 - 4.0215 1.00 2606 144 0.1505 0.1805 REMARK 3 4 4.0215 - 3.6539 1.00 2579 138 0.1744 0.2047 REMARK 3 5 3.6539 - 3.3921 1.00 2584 115 0.1905 0.2297 REMARK 3 6 3.3921 - 3.1922 1.00 2572 140 0.2000 0.2669 REMARK 3 7 3.1922 - 3.0323 1.00 2579 151 0.2137 0.2620 REMARK 3 8 3.0323 - 2.9004 1.00 2547 142 0.2222 0.2645 REMARK 3 9 2.9004 - 2.7887 1.00 2545 138 0.2213 0.2799 REMARK 3 10 2.7887 - 2.6925 1.00 2567 128 0.2385 0.2508 REMARK 3 11 2.6925 - 2.6083 1.00 2592 119 0.2412 0.3070 REMARK 3 12 2.6083 - 2.5338 1.00 2543 147 0.2423 0.3345 REMARK 3 13 2.5338 - 2.4671 1.00 2551 141 0.2393 0.3216 REMARK 3 14 2.4671 - 2.4069 1.00 2566 138 0.2477 0.2888 REMARK 3 15 2.4069 - 2.3522 1.00 2549 130 0.2488 0.3272 REMARK 3 16 2.3522 - 2.3021 1.00 2546 142 0.2597 0.3001 REMARK 3 17 2.3021 - 2.2560 0.97 2459 139 0.2715 0.3195 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 47.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.48570 REMARK 3 B22 (A**2) : -6.10860 REMARK 3 B33 (A**2) : 13.59440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.70620 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7524 REMARK 3 ANGLE : 0.991 10289 REMARK 3 CHIRALITY : 0.071 1206 REMARK 3 PLANARITY : 0.004 1384 REMARK 3 DIHEDRAL : 13.047 2764 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000069076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115872 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46032 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.256 REMARK 200 RESOLUTION RANGE LOW (A) : 47.891 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34400 REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX - PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OUK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7-0.8 M SUCCINATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.69100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -3 REMARK 465 ALA A -2 REMARK 465 PHE A -1 REMARK 465 ASP A 0 REMARK 465 ALA A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 ASP A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 ASP A 14 REMARK 465 ASP A 15 REMARK 465 VAL A 262 REMARK 465 ALA A 263 REMARK 465 ASP A 264 REMARK 465 ARG A 265 REMARK 465 THR A 266 REMARK 465 GLU A 267 REMARK 465 VAL A 268 REMARK 465 LEU A 269 REMARK 465 GLY A 270 REMARK 465 PRO A 271 REMARK 465 ILE A 272 REMARK 465 ASP A 273 REMARK 465 GLU A 274 REMARK 465 ALA A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 SER A 278 REMARK 465 ALA A 279 REMARK 465 ALA A 280 REMARK 465 PRO A 281 REMARK 465 ARG A 282 REMARK 465 ILE B -3 REMARK 465 ALA B -2 REMARK 465 PHE B -1 REMARK 465 ASP B 0 REMARK 465 ALA B 1 REMARK 465 LEU B 2 REMARK 465 ARG B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 5 REMARK 465 ASP B 6 REMARK 465 ARG B 7 REMARK 465 GLU B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 ASP B 14 REMARK 465 ASP B 15 REMARK 465 VAL B 16 REMARK 465 GLN B 17 REMARK 465 VAL B 262 REMARK 465 ALA B 263 REMARK 465 ASP B 264 REMARK 465 ARG B 265 REMARK 465 THR B 266 REMARK 465 GLU B 267 REMARK 465 VAL B 268 REMARK 465 LEU B 269 REMARK 465 GLY B 270 REMARK 465 PRO B 271 REMARK 465 ILE B 272 REMARK 465 ASP B 273 REMARK 465 GLU B 274 REMARK 465 ALA B 275 REMARK 465 PRO B 276 REMARK 465 VAL B 277 REMARK 465 SER B 278 REMARK 465 ALA B 279 REMARK 465 ALA B 280 REMARK 465 PRO B 281 REMARK 465 ARG B 282 REMARK 465 ILE C -3 REMARK 465 ALA C -2 REMARK 465 PHE C -1 REMARK 465 ASP C 0 REMARK 465 ALA C 1 REMARK 465 LEU C 2 REMARK 465 ARG C 3 REMARK 465 GLU C 4 REMARK 465 PRO C 5 REMARK 465 ASP C 6 REMARK 465 ARG C 7 REMARK 465 GLU C 8 REMARK 465 SER C 9 REMARK 465 SER C 10 REMARK 465 ALA C 11 REMARK 465 PRO C 12 REMARK 465 ALA C 263 REMARK 465 ASP C 264 REMARK 465 ARG C 265 REMARK 465 THR C 266 REMARK 465 GLU C 267 REMARK 465 VAL C 268 REMARK 465 LEU C 269 REMARK 465 GLY C 270 REMARK 465 PRO C 271 REMARK 465 ILE C 272 REMARK 465 ASP C 273 REMARK 465 GLU C 274 REMARK 465 ALA C 275 REMARK 465 PRO C 276 REMARK 465 VAL C 277 REMARK 465 SER C 278 REMARK 465 ALA C 279 REMARK 465 ALA C 280 REMARK 465 PRO C 281 REMARK 465 ARG C 282 REMARK 465 ILE D -3 REMARK 465 ALA D -2 REMARK 465 PHE D -1 REMARK 465 ASP D 0 REMARK 465 ALA D 1 REMARK 465 LEU D 2 REMARK 465 ARG D 3 REMARK 465 GLU D 4 REMARK 465 PRO D 5 REMARK 465 ASP D 6 REMARK 465 ARG D 7 REMARK 465 GLU D 8 REMARK 465 SER D 9 REMARK 465 SER D 10 REMARK 465 ALA D 11 REMARK 465 PRO D 12 REMARK 465 PRO D 13 REMARK 465 ASP D 14 REMARK 465 ASP D 264 REMARK 465 ARG D 265 REMARK 465 THR D 266 REMARK 465 GLU D 267 REMARK 465 VAL D 268 REMARK 465 LEU D 269 REMARK 465 GLY D 270 REMARK 465 PRO D 271 REMARK 465 ILE D 272 REMARK 465 ASP D 273 REMARK 465 GLU D 274 REMARK 465 ALA D 275 REMARK 465 PRO D 276 REMARK 465 VAL D 277 REMARK 465 SER D 278 REMARK 465 ALA D 279 REMARK 465 ALA D 280 REMARK 465 PRO D 281 REMARK 465 ARG D 282 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 PRO C 13 CG CD REMARK 470 ASP C 14 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 17 CG CD OE1 NE2 REMARK 480 ARG A 99 CD NE CZ NH1 REMARK 480 ARG A 143 CD NE CZ NH1 NH2 REMARK 480 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 480 PHE A 230 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 226 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 238 NE CZ NH1 NH2 REMARK 480 ARG B 247 CD NE CZ NH1 NH2 REMARK 480 GLN C 17 CD NE2 REMARK 480 ARG C 99 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 129 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 143 CD NE CZ NH1 NH2 REMARK 480 ARG C 212 NE CZ NH1 NH2 REMARK 480 ARG C 226 CG CD NE CZ NH1 NH2 REMARK 480 PHE C 230 CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLN D 17 CD OE1 NE2 REMARK 480 GLU D 73 CG CD OE1 OE2 REMARK 480 ARG D 80 CG CD NE CZ NH1 NH2 REMARK 480 ARG D 91 CG CD NE CZ NH1 NH2 REMARK 480 ARG D 99 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG D 204 CD NE CZ NH1 NH2 REMARK 480 ARG D 212 CG CD NE CZ NH1 NH2 REMARK 480 ASP D 243 CB CG OD1 OD2 REMARK 480 ARG D 247 CG CD NE CZ NH1 NH2 REMARK 480 GLN D 258 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG A 226 OD1 ASP B 227 1545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 197 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO C 197 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 PRO D 197 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 25 70.66 59.36 REMARK 500 HIS A 152 139.57 -175.18 REMARK 500 PRO A 197 48.07 -88.67 REMARK 500 PRO A 199 44.72 -75.12 REMARK 500 GLU A 200 -112.75 45.26 REMARK 500 ALA A 201 -130.26 64.19 REMARK 500 LEU B 32 -64.16 -107.18 REMARK 500 HIS B 152 138.98 -176.03 REMARK 500 ASP B 243 -78.91 -58.90 REMARK 500 ALA C 25 66.86 60.67 REMARK 500 PRO C 40 48.46 -89.14 REMARK 500 SER C 121 70.55 51.01 REMARK 500 HIS C 152 140.55 -175.78 REMARK 500 ILE C 224 -63.69 -95.32 REMARK 500 ALA D 100 -63.85 -99.85 REMARK 500 SER D 121 70.45 52.65 REMARK 500 HIS D 152 139.09 -176.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 199 GLU A 200 146.85 REMARK 500 PRO B 169 ALA B 170 149.61 REMARK 500 PRO D 169 ALA D 170 147.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OTV RELATED DB: PDB REMARK 900 RELATED ID: 3OUK RELATED DB: PDB REMARK 900 RELATED ID: RV3910 RELATED DB: TARGETDB REMARK 900 RELATED ID: 3OUN RELATED DB: PDB DBREF 3UQC A -3 282 UNP O05435 O05435_MYCTU 678 963 DBREF 3UQC B -3 282 UNP O05435 O05435_MYCTU 678 963 DBREF 3UQC C -3 282 UNP O05435 O05435_MYCTU 678 963 DBREF 3UQC D -3 282 UNP O05435 O05435_MYCTU 678 963 SEQRES 1 A 286 ILE ALA PHE ASP ALA LEU ARG GLU PRO ASP ARG GLU SER SEQRES 2 A 286 SER ALA PRO PRO ASP ASP VAL GLN LEU VAL PRO GLY ALA SEQRES 3 A 286 ARG ILE ALA ASN GLY ARG TYR ARG LEU LEU ILE PHE HIS SEQRES 4 A 286 GLY GLY VAL PRO PRO LEU GLN PHE TRP GLN ALA LEU ASP SEQRES 5 A 286 THR ALA LEU ASP ARG GLN VAL ALA LEU THR PHE VAL ASP SEQRES 6 A 286 PRO GLN GLY VAL LEU PRO ASP ASP VAL LEU GLN GLU THR SEQRES 7 A 286 LEU SER ARG THR LEU ARG LEU SER ARG ILE ASP LYS PRO SEQRES 8 A 286 GLY VAL ALA ARG VAL LEU ASP VAL VAL HIS THR ARG ALA SEQRES 9 A 286 GLY GLY LEU VAL VAL ALA GLU TRP ILE ARG GLY GLY SER SEQRES 10 A 286 LEU GLN GLU VAL ALA ASP THR SER PRO SER PRO VAL GLY SEQRES 11 A 286 ALA ILE ARG ALA MET GLN SER LEU ALA ALA ALA ALA ASP SEQRES 12 A 286 ALA ALA HIS ARG ALA GLY VAL ALA LEU SER ILE ASP HIS SEQRES 13 A 286 PRO SER ARG VAL ARG VAL SER ILE ASP GLY ASP VAL VAL SEQRES 14 A 286 LEU ALA TYR PRO ALA THR MET PRO ASP ALA ASN PRO GLN SEQRES 15 A 286 ASP ASP ILE ARG GLY ILE GLY ALA SER LEU TYR ALA LEU SEQRES 16 A 286 LEU VAL ASN ARG TRP PRO LEU PRO GLU ALA GLY VAL ARG SEQRES 17 A 286 SER GLY LEU ALA PRO ALA GLU ARG ASP THR ALA GLY GLN SEQRES 18 A 286 PRO ILE GLU PRO ALA ASP ILE ASP ARG ASP ILE PRO PHE SEQRES 19 A 286 GLN ILE SER ALA VAL ALA ALA ARG SER VAL GLN GLY ASP SEQRES 20 A 286 GLY GLY ILE ARG SER ALA SER THR LEU LEU ASN LEU MET SEQRES 21 A 286 GLN GLN ALA THR ALA VAL ALA ASP ARG THR GLU VAL LEU SEQRES 22 A 286 GLY PRO ILE ASP GLU ALA PRO VAL SER ALA ALA PRO ARG SEQRES 1 B 286 ILE ALA PHE ASP ALA LEU ARG GLU PRO ASP ARG GLU SER SEQRES 2 B 286 SER ALA PRO PRO ASP ASP VAL GLN LEU VAL PRO GLY ALA SEQRES 3 B 286 ARG ILE ALA ASN GLY ARG TYR ARG LEU LEU ILE PHE HIS SEQRES 4 B 286 GLY GLY VAL PRO PRO LEU GLN PHE TRP GLN ALA LEU ASP SEQRES 5 B 286 THR ALA LEU ASP ARG GLN VAL ALA LEU THR PHE VAL ASP SEQRES 6 B 286 PRO GLN GLY VAL LEU PRO ASP ASP VAL LEU GLN GLU THR SEQRES 7 B 286 LEU SER ARG THR LEU ARG LEU SER ARG ILE ASP LYS PRO SEQRES 8 B 286 GLY VAL ALA ARG VAL LEU ASP VAL VAL HIS THR ARG ALA SEQRES 9 B 286 GLY GLY LEU VAL VAL ALA GLU TRP ILE ARG GLY GLY SER SEQRES 10 B 286 LEU GLN GLU VAL ALA ASP THR SER PRO SER PRO VAL GLY SEQRES 11 B 286 ALA ILE ARG ALA MET GLN SER LEU ALA ALA ALA ALA ASP SEQRES 12 B 286 ALA ALA HIS ARG ALA GLY VAL ALA LEU SER ILE ASP HIS SEQRES 13 B 286 PRO SER ARG VAL ARG VAL SER ILE ASP GLY ASP VAL VAL SEQRES 14 B 286 LEU ALA TYR PRO ALA THR MET PRO ASP ALA ASN PRO GLN SEQRES 15 B 286 ASP ASP ILE ARG GLY ILE GLY ALA SER LEU TYR ALA LEU SEQRES 16 B 286 LEU VAL ASN ARG TRP PRO LEU PRO GLU ALA GLY VAL ARG SEQRES 17 B 286 SER GLY LEU ALA PRO ALA GLU ARG ASP THR ALA GLY GLN SEQRES 18 B 286 PRO ILE GLU PRO ALA ASP ILE ASP ARG ASP ILE PRO PHE SEQRES 19 B 286 GLN ILE SER ALA VAL ALA ALA ARG SER VAL GLN GLY ASP SEQRES 20 B 286 GLY GLY ILE ARG SER ALA SER THR LEU LEU ASN LEU MET SEQRES 21 B 286 GLN GLN ALA THR ALA VAL ALA ASP ARG THR GLU VAL LEU SEQRES 22 B 286 GLY PRO ILE ASP GLU ALA PRO VAL SER ALA ALA PRO ARG SEQRES 1 C 286 ILE ALA PHE ASP ALA LEU ARG GLU PRO ASP ARG GLU SER SEQRES 2 C 286 SER ALA PRO PRO ASP ASP VAL GLN LEU VAL PRO GLY ALA SEQRES 3 C 286 ARG ILE ALA ASN GLY ARG TYR ARG LEU LEU ILE PHE HIS SEQRES 4 C 286 GLY GLY VAL PRO PRO LEU GLN PHE TRP GLN ALA LEU ASP SEQRES 5 C 286 THR ALA LEU ASP ARG GLN VAL ALA LEU THR PHE VAL ASP SEQRES 6 C 286 PRO GLN GLY VAL LEU PRO ASP ASP VAL LEU GLN GLU THR SEQRES 7 C 286 LEU SER ARG THR LEU ARG LEU SER ARG ILE ASP LYS PRO SEQRES 8 C 286 GLY VAL ALA ARG VAL LEU ASP VAL VAL HIS THR ARG ALA SEQRES 9 C 286 GLY GLY LEU VAL VAL ALA GLU TRP ILE ARG GLY GLY SER SEQRES 10 C 286 LEU GLN GLU VAL ALA ASP THR SER PRO SER PRO VAL GLY SEQRES 11 C 286 ALA ILE ARG ALA MET GLN SER LEU ALA ALA ALA ALA ASP SEQRES 12 C 286 ALA ALA HIS ARG ALA GLY VAL ALA LEU SER ILE ASP HIS SEQRES 13 C 286 PRO SER ARG VAL ARG VAL SER ILE ASP GLY ASP VAL VAL SEQRES 14 C 286 LEU ALA TYR PRO ALA THR MET PRO ASP ALA ASN PRO GLN SEQRES 15 C 286 ASP ASP ILE ARG GLY ILE GLY ALA SER LEU TYR ALA LEU SEQRES 16 C 286 LEU VAL ASN ARG TRP PRO LEU PRO GLU ALA GLY VAL ARG SEQRES 17 C 286 SER GLY LEU ALA PRO ALA GLU ARG ASP THR ALA GLY GLN SEQRES 18 C 286 PRO ILE GLU PRO ALA ASP ILE ASP ARG ASP ILE PRO PHE SEQRES 19 C 286 GLN ILE SER ALA VAL ALA ALA ARG SER VAL GLN GLY ASP SEQRES 20 C 286 GLY GLY ILE ARG SER ALA SER THR LEU LEU ASN LEU MET SEQRES 21 C 286 GLN GLN ALA THR ALA VAL ALA ASP ARG THR GLU VAL LEU SEQRES 22 C 286 GLY PRO ILE ASP GLU ALA PRO VAL SER ALA ALA PRO ARG SEQRES 1 D 286 ILE ALA PHE ASP ALA LEU ARG GLU PRO ASP ARG GLU SER SEQRES 2 D 286 SER ALA PRO PRO ASP ASP VAL GLN LEU VAL PRO GLY ALA SEQRES 3 D 286 ARG ILE ALA ASN GLY ARG TYR ARG LEU LEU ILE PHE HIS SEQRES 4 D 286 GLY GLY VAL PRO PRO LEU GLN PHE TRP GLN ALA LEU ASP SEQRES 5 D 286 THR ALA LEU ASP ARG GLN VAL ALA LEU THR PHE VAL ASP SEQRES 6 D 286 PRO GLN GLY VAL LEU PRO ASP ASP VAL LEU GLN GLU THR SEQRES 7 D 286 LEU SER ARG THR LEU ARG LEU SER ARG ILE ASP LYS PRO SEQRES 8 D 286 GLY VAL ALA ARG VAL LEU ASP VAL VAL HIS THR ARG ALA SEQRES 9 D 286 GLY GLY LEU VAL VAL ALA GLU TRP ILE ARG GLY GLY SER SEQRES 10 D 286 LEU GLN GLU VAL ALA ASP THR SER PRO SER PRO VAL GLY SEQRES 11 D 286 ALA ILE ARG ALA MET GLN SER LEU ALA ALA ALA ALA ASP SEQRES 12 D 286 ALA ALA HIS ARG ALA GLY VAL ALA LEU SER ILE ASP HIS SEQRES 13 D 286 PRO SER ARG VAL ARG VAL SER ILE ASP GLY ASP VAL VAL SEQRES 14 D 286 LEU ALA TYR PRO ALA THR MET PRO ASP ALA ASN PRO GLN SEQRES 15 D 286 ASP ASP ILE ARG GLY ILE GLY ALA SER LEU TYR ALA LEU SEQRES 16 D 286 LEU VAL ASN ARG TRP PRO LEU PRO GLU ALA GLY VAL ARG SEQRES 17 D 286 SER GLY LEU ALA PRO ALA GLU ARG ASP THR ALA GLY GLN SEQRES 18 D 286 PRO ILE GLU PRO ALA ASP ILE ASP ARG ASP ILE PRO PHE SEQRES 19 D 286 GLN ILE SER ALA VAL ALA ALA ARG SER VAL GLN GLY ASP SEQRES 20 D 286 GLY GLY ILE ARG SER ALA SER THR LEU LEU ASN LEU MET SEQRES 21 D 286 GLN GLN ALA THR ALA VAL ALA ASP ARG THR GLU VAL LEU SEQRES 22 D 286 GLY PRO ILE ASP GLU ALA PRO VAL SER ALA ALA PRO ARG HET SIN B 301 8 HETNAM SIN SUCCINIC ACID FORMUL 5 SIN C4 H6 O4 FORMUL 6 HOH *326(H2 O) HELIX 1 1 PRO A 67 ARG A 83 1 17 HELIX 2 2 LEU A 114 ASP A 119 1 6 HELIX 3 3 SER A 123 ALA A 144 1 22 HELIX 4 4 HIS A 152 SER A 154 5 3 HELIX 5 5 ASN A 176 ASN A 194 1 19 HELIX 6 6 GLU A 220 ASP A 225 1 6 HELIX 7 7 PRO A 229 GLN A 241 1 13 HELIX 8 8 SER A 248 ALA A 261 1 14 HELIX 9 9 PRO B 67 ARG B 83 1 17 HELIX 10 10 LEU B 114 ASP B 119 1 6 HELIX 11 11 SER B 123 ALA B 144 1 22 HELIX 12 12 HIS B 152 SER B 154 5 3 HELIX 13 13 ASN B 176 ASN B 194 1 19 HELIX 14 14 GLU B 220 ASP B 225 1 6 HELIX 15 15 PRO B 229 GLN B 241 1 13 HELIX 16 16 SER B 248 ALA B 261 1 14 HELIX 17 17 PRO C 67 LEU C 81 1 15 HELIX 18 18 SER C 82 ILE C 84 5 3 HELIX 19 19 LEU C 114 ASP C 119 1 6 HELIX 20 20 SER C 123 ALA C 144 1 22 HELIX 21 21 HIS C 152 SER C 154 5 3 HELIX 22 22 ASN C 176 ASN C 194 1 19 HELIX 23 23 GLU C 220 ASP C 225 1 6 HELIX 24 24 PRO C 229 GLN C 241 1 13 HELIX 25 25 SER C 248 VAL C 262 1 15 HELIX 26 26 PRO D 67 ARG D 83 1 17 HELIX 27 27 LEU D 114 ASP D 119 1 6 HELIX 28 28 SER D 123 ALA D 144 1 22 HELIX 29 29 HIS D 152 SER D 154 5 3 HELIX 30 30 ASN D 176 ASN D 194 1 19 HELIX 31 31 GLU D 220 ASP D 225 1 6 HELIX 32 32 PRO D 229 GLN D 241 1 13 HELIX 33 33 SER D 248 ALA D 263 1 16 SHEET 1 A 6 ARG A 23 ILE A 24 0 SHEET 2 A 6 TYR A 29 GLY A 36 -1 O TYR A 29 N ILE A 24 SHEET 3 A 6 GLN A 42 ASP A 48 -1 O PHE A 43 N GLY A 36 SHEET 4 A 6 ARG A 53 PHE A 59 -1 O ARG A 53 N ASP A 48 SHEET 5 A 6 GLY A 101 GLU A 107 -1 O ALA A 106 N ALA A 56 SHEET 6 A 6 VAL A 92 THR A 98 -1 N ASP A 94 O VAL A 105 SHEET 1 B 3 GLY A 111 SER A 113 0 SHEET 2 B 3 VAL A 156 SER A 159 -1 O VAL A 158 N GLY A 112 SHEET 3 B 3 VAL A 164 LEU A 166 -1 O VAL A 165 N ARG A 157 SHEET 1 C 2 ARG A 195 TRP A 196 0 SHEET 2 C 2 ALA A 208 PRO A 209 1 O ALA A 208 N TRP A 196 SHEET 1 D 6 ARG B 23 ILE B 24 0 SHEET 2 D 6 TYR B 29 PHE B 34 -1 O TYR B 29 N ILE B 24 SHEET 3 D 6 GLN B 42 ASP B 48 -1 O GLN B 45 N ILE B 33 SHEET 4 D 6 ARG B 53 PHE B 59 -1 O ARG B 53 N ASP B 48 SHEET 5 D 6 GLY B 101 GLU B 107 -1 O ALA B 106 N ALA B 56 SHEET 6 D 6 VAL B 92 THR B 98 -1 N LEU B 93 O VAL B 105 SHEET 1 E 3 GLY B 111 SER B 113 0 SHEET 2 E 3 VAL B 156 SER B 159 -1 O VAL B 158 N GLY B 112 SHEET 3 E 3 VAL B 164 LEU B 166 -1 O VAL B 165 N ARG B 157 SHEET 1 F 6 ARG C 23 ILE C 24 0 SHEET 2 F 6 TYR C 29 GLY C 36 -1 O TYR C 29 N ILE C 24 SHEET 3 F 6 LEU C 41 ASP C 48 -1 O PHE C 43 N GLY C 36 SHEET 4 F 6 ARG C 53 VAL C 60 -1 O ARG C 53 N ASP C 48 SHEET 5 F 6 GLY C 102 GLU C 107 -1 O GLY C 102 N VAL C 60 SHEET 6 F 6 VAL C 92 HIS C 97 -1 N ASP C 94 O VAL C 105 SHEET 1 G 3 GLY C 111 SER C 113 0 SHEET 2 G 3 VAL C 156 SER C 159 -1 O VAL C 158 N GLY C 112 SHEET 3 G 3 VAL C 164 LEU C 166 -1 O VAL C 165 N ARG C 157 SHEET 1 H 6 ARG D 23 ILE D 24 0 SHEET 2 H 6 TYR D 29 GLY D 36 -1 O TYR D 29 N ILE D 24 SHEET 3 H 6 LEU D 41 ASP D 48 -1 O PHE D 43 N HIS D 35 SHEET 4 H 6 ARG D 53 VAL D 60 -1 O ARG D 53 N ASP D 48 SHEET 5 H 6 GLY D 102 GLU D 107 -1 O GLY D 102 N VAL D 60 SHEET 6 H 6 VAL D 92 HIS D 97 -1 N VAL D 96 O LEU D 103 SHEET 1 I 3 GLY D 111 SER D 113 0 SHEET 2 I 3 VAL D 156 SER D 159 -1 O VAL D 158 N GLY D 112 SHEET 3 I 3 VAL D 164 LEU D 166 -1 O VAL D 165 N ARG D 157 CISPEP 1 PRO A 39 PRO A 40 0 3.58 CISPEP 2 PRO B 39 PRO B 40 0 0.18 CISPEP 3 PRO C 39 PRO C 40 0 2.43 CISPEP 4 PRO D 39 PRO D 40 0 6.20 SITE 1 AC1 4 GLU B 200 GLY B 202 HOH B 475 HOH B 536 CRYST1 57.974 59.382 144.031 90.00 97.34 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017249 0.000000 0.002222 0.00000 SCALE2 0.000000 0.016840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007000 0.00000