HEADER TRANSFERASE/TRANSFERASE INHIBITOR 20-NOV-11 3UQF TITLE C-SRC KINASE DOMAIN IN COMPLEX WITH BKI RM-1-89 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 251-533); COMPND 5 SYNONYM: PROTO-ONCOGENE C-SRC, PP60C-SRC, P60-SRC; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYROSINE PROTEIN KINASE, ATP-BINDING, KINASE DOMAIN, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT,E.T.LARSON REVDAT 3 28-FEB-24 3UQF 1 REMARK SEQADV REVDAT 2 18-APR-12 3UQF 1 JRNL REVDAT 1 14-MAR-12 3UQF 0 JRNL AUTH E.T.LARSON,K.K.OJO,R.C.MURPHY,S.M.JOHNSON,Z.ZHANG,J.E.KIM, JRNL AUTH 2 D.J.LEIBLY,A.M.FOX,M.C.REID,E.J.DALE,B.G.PERERA,J.KIM, JRNL AUTH 3 S.N.HEWITT,W.G.HOL,C.L.VERLINDE,E.FAN,W.C.VAN VOORHIS, JRNL AUTH 4 D.J.MALY,E.A.MERRITT JRNL TITL MULTIPLE DETERMINANTS FOR SELECTIVE INHIBITION OF JRNL TITL 2 APICOMPLEXAN CALCIUM-DEPENDENT PROTEIN KINASE CDPK1. JRNL REF J.MED.CHEM. V. 55 2803 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22369268 JRNL DOI 10.1021/JM201725V REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.M.J.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.J.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 PMID 20436472 REMARK 1 DOI 10.1038/NSMB.1818 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, REMARK 1 AUTH 2 B.G.K.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.MULLER, REMARK 1 AUTH 3 C.L.M.J.VERLINDE,S.H.NAKAZAWA,W.G.J.HOL,F.S.BUCKNER, REMARK 1 AUTH 4 A.J.NAPULI,C.A.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY REMARK 1 TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF REMARK 1 TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM C. PARVUM REMARK 1 TITL 3 AND T. GONDII REMARK 1 REF ACS MED.CHEM.LETT. V. 1 331 2010 REMARK 1 REFN ISSN 1948-5875 REMARK 1 PMID 21116453 REMARK 1 DOI 10.1021/ML100096T REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 32963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2326 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4050 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : 0.55000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.283 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4216 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2873 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5730 ; 1.194 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6964 ; 0.958 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 5.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;36.784 ;23.702 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 701 ;13.620 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;11.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4640 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 856 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8390 -40.0200 16.5190 REMARK 3 T TENSOR REMARK 3 T11: 0.3243 T22: 0.1030 REMARK 3 T33: 0.0776 T12: 0.0011 REMARK 3 T13: 0.0349 T23: 0.0849 REMARK 3 L TENSOR REMARK 3 L11: 4.7550 L22: 4.3276 REMARK 3 L33: 9.3149 L12: 0.4184 REMARK 3 L13: 1.1703 L23: 0.2681 REMARK 3 S TENSOR REMARK 3 S11: -0.1742 S12: -0.2336 S13: -0.2051 REMARK 3 S21: -0.0615 S22: 0.1220 S23: -0.0002 REMARK 3 S31: 0.4377 S32: 0.1469 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2100 -29.7970 15.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.5875 T22: 0.5162 REMARK 3 T33: 0.2719 T12: -0.2199 REMARK 3 T13: -0.1605 T23: 0.1803 REMARK 3 L TENSOR REMARK 3 L11: 4.0277 L22: 20.1450 REMARK 3 L33: 13.2881 L12: -0.2451 REMARK 3 L13: 0.1008 L23: -16.3523 REMARK 3 S TENSOR REMARK 3 S11: 0.2182 S12: -0.4450 S13: 0.0434 REMARK 3 S21: 0.2039 S22: -1.9137 S23: -2.0254 REMARK 3 S31: -0.2526 S32: 1.6104 S33: 1.6955 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 319 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1700 -29.9150 1.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.0693 REMARK 3 T33: 0.1269 T12: 0.0026 REMARK 3 T13: 0.0151 T23: 0.0531 REMARK 3 L TENSOR REMARK 3 L11: 0.7545 L22: 1.5340 REMARK 3 L33: 1.6297 L12: 0.1521 REMARK 3 L13: 0.1060 L23: -0.4201 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: -0.0227 S13: -0.0207 REMARK 3 S21: 0.2691 S22: 0.0341 S23: 0.1409 REMARK 3 S31: 0.0086 S32: 0.0752 S33: 0.0477 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 404 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4950 -32.0590 -4.1220 REMARK 3 T TENSOR REMARK 3 T11: 0.0740 T22: 0.1876 REMARK 3 T33: 0.2021 T12: 0.0443 REMARK 3 T13: -0.0571 T23: 0.0705 REMARK 3 L TENSOR REMARK 3 L11: 8.5589 L22: 0.7742 REMARK 3 L33: 6.4672 L12: -2.0215 REMARK 3 L13: -1.2816 L23: 1.6563 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.1008 S13: 0.3729 REMARK 3 S21: 0.0591 S22: 0.1438 S23: -0.1282 REMARK 3 S31: 0.2420 S32: 0.4514 S33: -0.1972 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 439 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9020 -26.4430 -14.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.1637 REMARK 3 T33: 0.1153 T12: -0.0432 REMARK 3 T13: 0.0163 T23: 0.0814 REMARK 3 L TENSOR REMARK 3 L11: 1.3699 L22: 1.8543 REMARK 3 L33: 0.8920 L12: -0.7958 REMARK 3 L13: 0.7860 L23: -0.1670 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.2673 S13: 0.0023 REMARK 3 S21: -0.1675 S22: -0.0746 S23: -0.1139 REMARK 3 S31: -0.0854 S32: 0.2980 S33: 0.1140 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 256 B 306 REMARK 3 ORIGIN FOR THE GROUP (A): -5.7790 -69.1140 -42.1520 REMARK 3 T TENSOR REMARK 3 T11: 0.9614 T22: 0.1236 REMARK 3 T33: 0.1366 T12: -0.0045 REMARK 3 T13: 0.1161 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 2.5203 L22: 2.7489 REMARK 3 L33: 9.2901 L12: -2.1944 REMARK 3 L13: 2.6272 L23: -1.7252 REMARK 3 S TENSOR REMARK 3 S11: 0.2849 S12: 0.3748 S13: -0.2259 REMARK 3 S21: -0.6824 S22: -0.2193 S23: 0.1358 REMARK 3 S31: 2.0512 S32: 0.3863 S33: -0.0655 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 307 B 329 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2130 -57.6050 -37.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.1631 REMARK 3 T33: 0.1197 T12: -0.0519 REMARK 3 T13: 0.0114 T23: 0.1091 REMARK 3 L TENSOR REMARK 3 L11: 0.8120 L22: 1.2161 REMARK 3 L33: 11.1579 L12: -0.5404 REMARK 3 L13: 0.3356 L23: 2.8379 REMARK 3 S TENSOR REMARK 3 S11: 0.1117 S12: -0.1081 S13: 0.0348 REMARK 3 S21: -0.1487 S22: -0.1013 S23: -0.0350 REMARK 3 S31: -0.0497 S32: -0.6723 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 330 B 403 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4280 -61.7610 -24.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.0909 REMARK 3 T33: 0.1437 T12: 0.0465 REMARK 3 T13: 0.0274 T23: 0.0513 REMARK 3 L TENSOR REMARK 3 L11: 0.1539 L22: 2.5283 REMARK 3 L33: 2.6187 L12: 0.1588 REMARK 3 L13: 0.4936 L23: -0.2869 REMARK 3 S TENSOR REMARK 3 S11: -0.0395 S12: -0.0119 S13: -0.0251 REMARK 3 S21: -0.3995 S22: 0.0610 S23: -0.1734 REMARK 3 S31: 0.1569 S32: -0.0128 S33: -0.0215 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 404 B 477 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5980 -64.5690 -14.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.1616 REMARK 3 T33: 0.1572 T12: 0.0238 REMARK 3 T13: -0.0003 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.8067 L22: 1.6599 REMARK 3 L33: 2.3121 L12: 0.1208 REMARK 3 L13: 0.9469 L23: -0.7369 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: -0.0911 S13: -0.0530 REMARK 3 S21: 0.0323 S22: 0.0218 S23: 0.1610 REMARK 3 S31: 0.0963 S32: -0.3305 S33: -0.0004 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 478 B 533 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2440 -53.8800 -7.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.1030 REMARK 3 T33: 0.1265 T12: 0.0719 REMARK 3 T13: -0.0080 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.0724 L22: 1.7612 REMARK 3 L33: 1.3815 L12: 1.2662 REMARK 3 L13: 0.5007 L23: 0.4068 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.1831 S13: 0.0754 REMARK 3 S21: 0.1833 S22: -0.1470 S23: 0.0612 REMARK 3 S31: -0.1141 S32: -0.1409 S33: 0.1015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3UQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 41.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG 4000, 100 MM MES PH 6.5, 5 MM REMARK 280 SODIUM ACETATE, 2.0 MM RM-1-89 IN 10% DMSO, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 MET A 250 REMARK 465 GLN A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 ALA A 256 REMARK 465 LYS A 257 REMARK 465 ARG A 409 REMARK 465 LEU A 410 REMARK 465 ILE A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLN A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 PHE A 424 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 MET B 250 REMARK 465 GLN B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 LEU B 297 REMARK 465 LYS B 298 REMARK 465 PRO B 299 REMARK 465 GLY B 300 REMARK 465 THR B 301 REMARK 465 MET B 302 REMARK 465 SER B 303 REMARK 465 LEU B 407 REMARK 465 ALA B 408 REMARK 465 ARG B 409 REMARK 465 LEU B 410 REMARK 465 ILE B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLN B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 465 PHE B 424 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 278 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 301 OG1 CG2 REMARK 470 SER A 303 OG REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 501 CG CD CE NZ REMARK 470 GLU B 265 CG CD OE1 OE2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 GLN B 275 CG CD OE1 NE2 REMARK 470 CYS B 277 SG REMARK 470 PHE B 278 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 GLU B 310 CG CD OE1 OE2 REMARK 470 GLN B 312 CG CD OE1 NE2 REMARK 470 VAL B 313 CG1 CG2 REMARK 470 GLU B 332 CG CD OE1 OE2 REMARK 470 LYS B 501 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 270 -62.59 -95.69 REMARK 500 ARG A 385 -10.78 82.25 REMARK 500 ASP A 386 44.00 -150.04 REMARK 500 ASP A 404 83.95 58.57 REMARK 500 GLU B 270 -63.30 -95.85 REMARK 500 ASN B 287 19.45 57.88 REMARK 500 ARG B 385 -11.27 83.38 REMARK 500 ASP B 386 44.81 -149.62 REMARK 500 ASP B 404 84.01 59.31 REMARK 500 PHE B 405 -70.50 -89.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BK5 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BK5 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UPX RELATED DB: PDB REMARK 900 RELATED ID: 3UPZ RELATED DB: PDB REMARK 900 RELATED ID: 3UQG RELATED DB: PDB REMARK 900 RELATED ID: 3V51 RELATED DB: PDB REMARK 900 RELATED ID: 3V5P RELATED DB: PDB REMARK 900 RELATED ID: 3V5T RELATED DB: PDB DBREF 3UQF A 251 533 UNP P00523 SRC_CHICK 251 533 DBREF 3UQF B 251 533 UNP P00523 SRC_CHICK 251 533 SEQADV 3UQF GLY A 248 UNP P00523 EXPRESSION TAG SEQADV 3UQF HIS A 249 UNP P00523 EXPRESSION TAG SEQADV 3UQF MET A 250 UNP P00523 EXPRESSION TAG SEQADV 3UQF GLY B 248 UNP P00523 EXPRESSION TAG SEQADV 3UQF HIS B 249 UNP P00523 EXPRESSION TAG SEQADV 3UQF MET B 250 UNP P00523 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 A 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 B 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET BK5 A 1 26 HET BK5 B 1 26 HETNAM BK5 3-(6-ETHOXYNAPHTHALEN-2-YL)-1-(PROPAN-2-YL)-1H- HETNAM 2 BK5 PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETSYN BK5 RM-1-89 FORMUL 3 BK5 2(C20 H21 N5 O) FORMUL 5 HOH *69(H2 O) HELIX 1 1 PRO A 263 GLU A 265 5 3 HELIX 2 2 SER A 303 LEU A 317 1 15 HELIX 3 3 SER A 345 GLY A 352 1 8 HELIX 4 4 MET A 354 LEU A 358 5 5 HELIX 5 5 ARG A 359 MET A 380 1 22 HELIX 6 6 ARG A 388 ALA A 390 5 3 HELIX 7 7 GLU A 396 LEU A 398 5 3 HELIX 8 8 PRO A 425 THR A 429 5 5 HELIX 9 9 ALA A 430 GLY A 437 1 8 HELIX 10 10 THR A 440 THR A 457 1 18 HELIX 11 11 VAL A 467 ARG A 477 1 11 HELIX 12 12 PRO A 488 TRP A 499 1 12 HELIX 13 13 ASP A 502 ARG A 506 5 5 HELIX 14 14 THR A 508 ASP A 518 1 11 HELIX 15 15 ASP A 518 THR A 523 1 6 HELIX 16 16 PRO B 263 GLU B 265 5 3 HELIX 17 17 GLU B 305 LEU B 317 1 13 HELIX 18 18 SER B 345 GLY B 352 1 8 HELIX 19 19 ARG B 359 MET B 380 1 22 HELIX 20 20 ARG B 388 ALA B 390 5 3 HELIX 21 21 GLU B 396 LEU B 398 5 3 HELIX 22 22 PRO B 425 THR B 429 5 5 HELIX 23 23 ALA B 430 GLY B 437 1 8 HELIX 24 24 THR B 440 THR B 457 1 18 HELIX 25 25 VAL B 467 ARG B 477 1 11 HELIX 26 26 PRO B 488 TRP B 499 1 12 HELIX 27 27 ASP B 502 ARG B 506 5 5 HELIX 28 28 THR B 508 ASP B 518 1 11 HELIX 29 29 ASP B 518 THR B 523 1 6 SHEET 1 A 5 LEU A 267 GLN A 275 0 SHEET 2 A 5 GLY A 279 TRP A 286 -1 O VAL A 281 N LEU A 273 SHEET 3 A 5 THR A 290 LEU A 297 -1 O ILE A 294 N TRP A 282 SHEET 4 A 5 TYR A 335 THR A 338 -1 O ILE A 336 N LYS A 295 SHEET 5 A 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 B 2 ILE A 392 VAL A 394 0 SHEET 2 B 2 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 C 5 LEU B 267 GLN B 275 0 SHEET 2 C 5 GLU B 280 TRP B 286 -1 O VAL B 281 N LEU B 273 SHEET 3 C 5 THR B 290 THR B 296 -1 O ILE B 294 N TRP B 282 SHEET 4 C 5 TYR B 335 THR B 338 -1 O ILE B 336 N LYS B 295 SHEET 5 C 5 LEU B 325 VAL B 329 -1 N TYR B 326 O VAL B 337 SHEET 1 D 2 ILE B 392 VAL B 394 0 SHEET 2 D 2 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393 CISPEP 1 GLU A 332 PRO A 333 0 -2.17 CISPEP 2 GLU B 332 PRO B 333 0 -2.65 SITE 1 AC1 11 HOH A 25 ALA A 293 LYS A 295 GLU A 310 SITE 2 AC1 11 MET A 314 THR A 338 GLU A 339 MET A 341 SITE 3 AC1 11 SER A 345 LEU A 393 ASP A 404 SITE 1 AC2 12 LEU B 273 VAL B 281 ALA B 293 LYS B 295 SITE 2 AC2 12 MET B 314 ILE B 336 THR B 338 GLU B 339 SITE 3 AC2 12 TYR B 340 MET B 341 SER B 345 LEU B 393 CRYST1 41.790 63.240 73.300 79.32 89.35 89.88 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023929 -0.000050 -0.000267 0.00000 SCALE2 0.000000 0.015813 -0.002982 0.00000 SCALE3 0.000000 0.000000 0.013884 0.00000