HEADER HYDROLASE 21-NOV-11 3UR6 TITLE 1.5A RESOLUTION STRUCTURE OF APO NORWALK VIRUS PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1101-1281; COMPND 5 SYNONYM: 3CLPRO; COMPND 6 EC: 3.4.22.66; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS; SOURCE 3 ORGANISM_TAXID: 524364; SOURCE 4 STRAIN: GI/HUMAN/UNITED STATES/NORWALK/1968; SOURCE 5 GENE: ORF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEASE, NOROVIRUS, NORWALK VIRUS, ANTIVIRAL INHIBITORS, DIPEPTIDYL KEYWDS 2 INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,K.P.BATTAILE,Y.KIM,K.C.TIEW,S.R.MANDADAPU,K.R.ALLISTON, AUTHOR 2 W.C.GROUTAS,K.O.CHANG REVDAT 4 13-SEP-23 3UR6 1 SEQADV REVDAT 3 08-NOV-17 3UR6 1 REMARK REVDAT 2 14-NOV-12 3UR6 1 JRNL REVDAT 1 05-SEP-12 3UR6 0 JRNL AUTH Y.KIM,S.LOVELL,K.C.TIEW,S.R.MANDADAPU,K.R.ALLISTON, JRNL AUTH 2 K.P.BATTAILE,W.C.GROUTAS,K.O.CHANG JRNL TITL BROAD-SPECTRUM ANTIVIRALS AGAINST 3C OR 3C-LIKE PROTEASES OF JRNL TITL 2 PICORNAVIRUSES, NOROVIRUSES, AND CORONAVIRUSES. JRNL REF J.VIROL. V. 86 11754 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22915796 JRNL DOI 10.1128/JVI.01348-12 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_845 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 47378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5793 - 4.6578 0.89 2622 132 0.1824 0.1940 REMARK 3 2 4.6578 - 3.6982 0.90 2629 144 0.1372 0.1468 REMARK 3 3 3.6982 - 3.2310 0.91 2663 163 0.1654 0.1808 REMARK 3 4 3.2310 - 2.9357 0.89 2651 144 0.1708 0.2057 REMARK 3 5 2.9357 - 2.7254 0.90 2643 148 0.1775 0.1688 REMARK 3 6 2.7254 - 2.5647 0.92 2663 145 0.1790 0.2150 REMARK 3 7 2.5647 - 2.4363 0.93 2718 162 0.1826 0.1910 REMARK 3 8 2.4363 - 2.3303 0.93 2742 145 0.1594 0.1832 REMARK 3 9 2.3303 - 2.2406 0.95 2766 148 0.1646 0.2017 REMARK 3 10 2.2406 - 2.1633 0.96 2842 167 0.1673 0.2091 REMARK 3 11 2.1633 - 2.0957 0.95 2818 132 0.1734 0.2122 REMARK 3 12 2.0957 - 2.0358 0.93 2782 141 0.1700 0.2162 REMARK 3 13 2.0358 - 1.9822 0.94 2672 182 0.1730 0.1986 REMARK 3 14 1.9822 - 1.9338 0.95 2863 118 0.1713 0.2022 REMARK 3 15 1.9338 - 1.8899 0.95 2732 159 0.1800 0.2314 REMARK 3 16 1.8899 - 1.8496 0.96 2807 166 0.1745 0.2126 REMARK 3 17 1.8496 - 1.8126 0.96 2858 165 0.1804 0.2365 REMARK 3 18 1.8126 - 1.7784 0.96 2781 144 0.1934 0.2148 REMARK 3 19 1.7784 - 1.7467 0.97 2895 140 0.1941 0.2750 REMARK 3 20 1.7467 - 1.7171 0.97 2825 123 0.2070 0.2524 REMARK 3 21 1.7171 - 1.6894 0.97 2849 149 0.2135 0.2700 REMARK 3 22 1.6894 - 1.6634 0.97 2900 153 0.2250 0.2964 REMARK 3 23 1.6634 - 1.6389 0.94 2792 150 0.2272 0.2564 REMARK 3 24 1.6389 - 1.6158 0.94 2684 137 0.2379 0.2547 REMARK 3 25 1.6158 - 1.5940 0.96 2894 148 0.2504 0.2748 REMARK 3 26 1.5940 - 1.5733 0.95 2759 170 0.2774 0.2994 REMARK 3 27 1.5733 - 1.5536 0.95 2776 133 0.2968 0.3237 REMARK 3 28 1.5536 - 1.5349 0.94 2821 141 0.3081 0.3458 REMARK 3 29 1.5349 - 1.5171 0.95 2820 145 0.3047 0.3239 REMARK 3 30 1.5171 - 1.5000 0.95 2732 148 0.3182 0.3550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.47 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 42.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.68010 REMARK 3 B22 (A**2) : 5.46390 REMARK 3 B33 (A**2) : -4.11430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.73330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2576 REMARK 3 ANGLE : 1.459 3506 REMARK 3 CHIRALITY : 0.084 399 REMARK 3 PLANARITY : 0.009 447 REMARK 3 DIHEDRAL : 13.467 904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:43) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2269 1.1909 22.0081 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.0845 REMARK 3 T33: 0.1124 T12: 0.0179 REMARK 3 T13: -0.0120 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.1773 L22: 1.8879 REMARK 3 L33: 1.9038 L12: -0.4526 REMARK 3 L13: -0.5106 L23: -1.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.0350 S12: -0.1580 S13: 0.1873 REMARK 3 S21: 0.1501 S22: 0.0642 S23: -0.0486 REMARK 3 S31: -0.1383 S32: 0.0798 S33: -0.0196 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 44:69) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8635 2.7600 19.5011 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1219 REMARK 3 T33: 0.1509 T12: 0.0219 REMARK 3 T13: 0.0162 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.7518 L22: 2.1115 REMARK 3 L33: 2.6987 L12: 0.0576 REMARK 3 L13: 1.2747 L23: -1.3517 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.0302 S13: 0.1340 REMARK 3 S21: -0.0950 S22: -0.1153 S23: -0.2708 REMARK 3 S31: -0.0412 S32: 0.2304 S33: 0.1783 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 70:93) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4896 -4.8008 12.8940 REMARK 3 T TENSOR REMARK 3 T11: 0.1602 T22: 0.0626 REMARK 3 T33: 0.1393 T12: 0.0132 REMARK 3 T13: -0.0103 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.0738 L22: 0.8560 REMARK 3 L33: 4.0266 L12: 0.4626 REMARK 3 L13: -0.3336 L23: -0.6146 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.1285 S13: 0.0431 REMARK 3 S21: -0.1084 S22: 0.0690 S23: 0.0778 REMARK 3 S31: 0.0228 S32: -0.1972 S33: -0.1050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 94:121) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9167 3.3599 6.5069 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.2069 REMARK 3 T33: 0.1716 T12: 0.0358 REMARK 3 T13: -0.0195 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.7251 L22: 2.8122 REMARK 3 L33: 2.5132 L12: 1.1619 REMARK 3 L13: -0.5138 L23: -1.7236 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: 0.0679 S13: 0.1894 REMARK 3 S21: -0.2475 S22: 0.1407 S23: 0.2914 REMARK 3 S31: -0.0550 S32: -0.3132 S33: -0.0986 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 122:173) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9779 -1.8641 11.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1002 REMARK 3 T33: 0.1118 T12: -0.0060 REMARK 3 T13: -0.0123 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.7530 L22: 3.8217 REMARK 3 L33: 2.5305 L12: -0.6825 REMARK 3 L13: -0.3392 L23: 0.4768 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.1997 S13: -0.0723 REMARK 3 S21: -0.1734 S22: 0.1014 S23: 0.2508 REMARK 3 S31: 0.1516 S32: -0.2150 S33: -0.0472 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ -2:43) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7905 -7.9878 38.3900 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.2094 REMARK 3 T33: 0.1281 T12: -0.0001 REMARK 3 T13: -0.0053 T23: 0.0656 REMARK 3 L TENSOR REMARK 3 L11: 1.5380 L22: 1.6153 REMARK 3 L33: 2.0148 L12: 0.2434 REMARK 3 L13: -0.2583 L23: 0.3102 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: -0.2429 S13: -0.0399 REMARK 3 S21: 0.1510 S22: -0.0577 S23: -0.1125 REMARK 3 S31: -0.0075 S32: 0.1342 S33: -0.0361 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 44:70) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0377 -7.3742 42.0062 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.2450 REMARK 3 T33: 0.1730 T12: -0.0106 REMARK 3 T13: 0.0331 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.6779 L22: 2.7210 REMARK 3 L33: 3.7204 L12: -0.8424 REMARK 3 L13: -0.2774 L23: 0.8411 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.2285 S13: 0.0306 REMARK 3 S21: 0.3105 S22: -0.0265 S23: 0.2937 REMARK 3 S31: 0.1226 S32: -0.3679 S33: 0.0242 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 71:93) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5122 -18.7507 38.2697 REMARK 3 T TENSOR REMARK 3 T11: 0.1663 T22: 0.2569 REMARK 3 T33: 0.1860 T12: 0.0224 REMARK 3 T13: 0.0197 T23: 0.1053 REMARK 3 L TENSOR REMARK 3 L11: 0.2769 L22: 2.5449 REMARK 3 L33: 1.4173 L12: -0.8257 REMARK 3 L13: 0.5015 L23: -1.2642 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.4802 S13: -0.2751 REMARK 3 S21: 0.1257 S22: -0.1715 S23: -0.1069 REMARK 3 S31: 0.0091 S32: 0.0331 S33: 0.1004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 94:111) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0470 -19.7466 46.4513 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.3090 REMARK 3 T33: 0.2453 T12: 0.0513 REMARK 3 T13: 0.0710 T23: 0.1787 REMARK 3 L TENSOR REMARK 3 L11: 0.5929 L22: 0.1156 REMARK 3 L33: 0.0501 L12: -0.0518 REMARK 3 L13: 0.0530 L23: -0.0356 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: -0.3173 S13: 0.2048 REMARK 3 S21: 0.3017 S22: 0.0879 S23: -0.0590 REMARK 3 S31: -0.3037 S32: -0.1225 S33: -0.0936 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 112:121) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4359 -20.7954 50.7370 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.3140 REMARK 3 T33: 0.1974 T12: -0.0019 REMARK 3 T13: 0.0088 T23: 0.1386 REMARK 3 L TENSOR REMARK 3 L11: 1.1687 L22: 1.7893 REMARK 3 L33: 8.4798 L12: -0.0846 REMARK 3 L13: -2.0521 L23: 2.5838 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.2668 S13: -0.1485 REMARK 3 S21: 0.3737 S22: -0.1390 S23: -0.1005 REMARK 3 S31: 0.2581 S32: 0.1830 S33: 0.1191 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 122:135) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3588 -17.2962 38.8468 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.4617 REMARK 3 T33: 0.3356 T12: -0.0521 REMARK 3 T13: 0.0215 T23: 0.0896 REMARK 3 L TENSOR REMARK 3 L11: 2.1324 L22: 0.5009 REMARK 3 L33: 1.0586 L12: 0.7190 REMARK 3 L13: -0.6544 L23: -0.6910 REMARK 3 S TENSOR REMARK 3 S11: -0.3302 S12: 0.6719 S13: -0.3335 REMARK 3 S21: -0.1773 S22: 0.2398 S23: -0.2321 REMARK 3 S31: 0.3159 S32: -0.1554 S33: 0.1357 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 136:173) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0018 -19.0505 41.6126 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.2719 REMARK 3 T33: 0.1628 T12: 0.0043 REMARK 3 T13: 0.0279 T23: 0.1039 REMARK 3 L TENSOR REMARK 3 L11: 1.5719 L22: 3.2431 REMARK 3 L33: 1.9767 L12: -0.2664 REMARK 3 L13: -0.3005 L23: 0.0432 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: -0.4634 S13: -0.2468 REMARK 3 S21: -0.0214 S22: 0.0350 S23: -0.0003 REMARK 3 S31: 0.0789 S32: 0.1797 S33: 0.0628 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000069106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47402 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 111.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 153587. REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.240 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6179 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.14 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2FYQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 100 MM SODIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 17.96600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 THR A 123 REMARK 465 GLY A 124 REMARK 465 ALA A 125 REMARK 465 ASN A 126 REMARK 465 ALA A 127 REMARK 465 LYS A 128 REMARK 465 GLY A 129 REMARK 465 MET A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 GLY A 174 REMARK 465 GLU A 175 REMARK 465 GLY A 176 REMARK 465 GLU A 177 REMARK 465 THR A 178 REMARK 465 ALA A 179 REMARK 465 LEU A 180 REMARK 465 GLU A 181 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 THR B 123 REMARK 465 GLY B 124 REMARK 465 ALA B 125 REMARK 465 GLY B 174 REMARK 465 GLU B 175 REMARK 465 GLY B 176 REMARK 465 GLU B 177 REMARK 465 THR B 178 REMARK 465 ALA B 179 REMARK 465 LEU B 180 REMARK 465 GLU B 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LEU A 121 CG CD1 CD2 REMARK 470 LEU A 122 CG CD1 CD2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ARG B 100 NE CZ NH1 NH2 REMARK 470 ARG B 112 NE CZ NH1 NH2 REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 233 O HOH B 258 2.09 REMARK 500 ND1 HIS A 50 O HOH A 270 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 251 O HOH A 262 1545 2.08 REMARK 500 O HOH B 235 O HOH B 249 1545 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 154 CB CYS A 154 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 0 72.60 60.58 REMARK 500 MET B 0 72.49 60.27 REMARK 500 GLN B 110 55.50 32.06 REMARK 500 LEU B 132 -165.60 -107.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3P99 RELATED DB: PDB REMARK 900 RELATED ID: 3UR9 RELATED DB: PDB REMARK 900 RELATED ID: 4F49 RELATED DB: PDB REMARK 900 RELATED ID: 4DCD RELATED DB: PDB DBREF 3UR6 A 1 181 UNP Q83883 POLG_NVN68 1101 1281 DBREF 3UR6 B 1 181 UNP Q83883 POLG_NVN68 1101 1281 SEQADV 3UR6 HIS A -6 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS A -5 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS A -4 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS A -3 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS A -2 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS A -1 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 MET A 0 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS B -6 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS B -5 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS B -4 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS B -3 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS B -2 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 HIS B -1 UNP Q83883 EXPRESSION TAG SEQADV 3UR6 MET B 0 UNP Q83883 EXPRESSION TAG SEQRES 1 A 188 HIS HIS HIS HIS HIS HIS MET ALA PRO PRO THR LEU TRP SEQRES 2 A 188 SER ARG VAL THR LYS PHE GLY SER GLY TRP GLY PHE TRP SEQRES 3 A 188 VAL SER PRO THR VAL PHE ILE THR THR THR HIS VAL VAL SEQRES 4 A 188 PRO THR GLY VAL LYS GLU PHE PHE GLY GLU PRO LEU SER SEQRES 5 A 188 SER ILE ALA ILE HIS GLN ALA GLY GLU PHE THR GLN PHE SEQRES 6 A 188 ARG PHE SER LYS LYS MET ARG PRO ASP LEU THR GLY MET SEQRES 7 A 188 VAL LEU GLU GLU GLY CYS PRO GLU GLY THR VAL CYS SER SEQRES 8 A 188 VAL LEU ILE LYS ARG ASP SER GLY GLU LEU LEU PRO LEU SEQRES 9 A 188 ALA VAL ARG MET GLY ALA ILE ALA SER MET ARG ILE GLN SEQRES 10 A 188 GLY ARG LEU VAL HIS GLY GLN SER GLY MET LEU LEU THR SEQRES 11 A 188 GLY ALA ASN ALA LYS GLY MET ASP LEU GLY THR ILE PRO SEQRES 12 A 188 GLY ASP CYS GLY ALA PRO TYR VAL HIS LYS ARG GLY ASN SEQRES 13 A 188 ASP TRP VAL VAL CYS GLY VAL HIS ALA ALA ALA THR LYS SEQRES 14 A 188 SER GLY ASN THR VAL VAL CYS ALA VAL GLN ALA GLY GLU SEQRES 15 A 188 GLY GLU THR ALA LEU GLU SEQRES 1 B 188 HIS HIS HIS HIS HIS HIS MET ALA PRO PRO THR LEU TRP SEQRES 2 B 188 SER ARG VAL THR LYS PHE GLY SER GLY TRP GLY PHE TRP SEQRES 3 B 188 VAL SER PRO THR VAL PHE ILE THR THR THR HIS VAL VAL SEQRES 4 B 188 PRO THR GLY VAL LYS GLU PHE PHE GLY GLU PRO LEU SER SEQRES 5 B 188 SER ILE ALA ILE HIS GLN ALA GLY GLU PHE THR GLN PHE SEQRES 6 B 188 ARG PHE SER LYS LYS MET ARG PRO ASP LEU THR GLY MET SEQRES 7 B 188 VAL LEU GLU GLU GLY CYS PRO GLU GLY THR VAL CYS SER SEQRES 8 B 188 VAL LEU ILE LYS ARG ASP SER GLY GLU LEU LEU PRO LEU SEQRES 9 B 188 ALA VAL ARG MET GLY ALA ILE ALA SER MET ARG ILE GLN SEQRES 10 B 188 GLY ARG LEU VAL HIS GLY GLN SER GLY MET LEU LEU THR SEQRES 11 B 188 GLY ALA ASN ALA LYS GLY MET ASP LEU GLY THR ILE PRO SEQRES 12 B 188 GLY ASP CYS GLY ALA PRO TYR VAL HIS LYS ARG GLY ASN SEQRES 13 B 188 ASP TRP VAL VAL CYS GLY VAL HIS ALA ALA ALA THR LYS SEQRES 14 B 188 SER GLY ASN THR VAL VAL CYS ALA VAL GLN ALA GLY GLU SEQRES 15 B 188 GLY GLU THR ALA LEU GLU FORMUL 3 HOH *186(H2 O) HELIX 1 1 PRO A 2 ARG A 8 1 7 HELIX 2 2 HIS A 30 VAL A 32 5 3 HELIX 3 3 ILE A 135 CYS A 139 5 5 HELIX 4 4 PRO B 2 ARG B 8 1 7 HELIX 5 5 HIS B 30 VAL B 32 5 3 HELIX 6 6 ILE B 135 CYS B 139 5 5 SHEET 1 A 5 VAL A 9 PHE A 12 0 SHEET 2 A 5 GLY A 15 TRP A 19 -1 O GLY A 17 N THR A 10 SHEET 3 A 5 VAL A 24 THR A 28 -1 O ILE A 26 N PHE A 18 SHEET 4 A 5 PHE A 55 PHE A 60 -1 O PHE A 58 N PHE A 25 SHEET 5 A 5 ILE A 47 ALA A 52 -1 N HIS A 50 O GLN A 57 SHEET 1 B 2 GLU A 38 PHE A 39 0 SHEET 2 B 2 GLU A 42 PRO A 43 -1 O GLU A 42 N PHE A 39 SHEET 1 C 8 VAL A 72 LEU A 73 0 SHEET 2 C 8 ASP A 150 ALA A 160 1 O VAL A 153 N VAL A 72 SHEET 3 C 8 THR A 166 ALA A 170 -1 O VAL A 168 N ALA A 158 SHEET 4 C 8 ARG A 112 LEU A 121 -1 N GLY A 119 O VAL A 167 SHEET 5 C 8 LEU A 94 ILE A 109 -1 N GLY A 102 O SER A 118 SHEET 6 C 8 VAL A 82 LYS A 88 -1 N ILE A 87 O LEU A 95 SHEET 7 C 8 PRO A 142 ARG A 147 -1 O VAL A 144 N SER A 84 SHEET 8 C 8 ASP A 150 ALA A 160 -1 O ASP A 150 N ARG A 147 SHEET 1 D 5 VAL B 9 PHE B 12 0 SHEET 2 D 5 GLY B 15 TRP B 19 -1 O GLY B 17 N THR B 10 SHEET 3 D 5 VAL B 24 THR B 28 -1 O ILE B 26 N PHE B 18 SHEET 4 D 5 PHE B 55 PHE B 60 -1 O PHE B 58 N PHE B 25 SHEET 5 D 5 ILE B 47 ALA B 52 -1 N ALA B 48 O ARG B 59 SHEET 1 E 2 GLU B 38 PHE B 39 0 SHEET 2 E 2 GLU B 42 PRO B 43 -1 O GLU B 42 N PHE B 39 SHEET 1 F 8 VAL B 72 LEU B 73 0 SHEET 2 F 8 ASP B 150 ALA B 160 1 O VAL B 153 N VAL B 72 SHEET 3 F 8 THR B 166 ALA B 170 -1 O ALA B 170 N VAL B 156 SHEET 4 F 8 ARG B 112 LEU B 121 -1 N GLY B 119 O VAL B 167 SHEET 5 F 8 LEU B 94 ILE B 109 -1 N GLY B 102 O SER B 118 SHEET 6 F 8 VAL B 82 LYS B 88 -1 N ILE B 87 O LEU B 95 SHEET 7 F 8 PRO B 142 ARG B 147 -1 O VAL B 144 N SER B 84 SHEET 8 F 8 ASP B 150 ALA B 160 -1 O ASP B 150 N ARG B 147 CRYST1 37.244 35.932 112.974 90.00 97.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026850 0.000000 0.003753 0.00000 SCALE2 0.000000 0.027830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008938 0.00000