data_3URF # _entry.id 3URF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3URF RCSB RCSB069115 WWPDB D_1000069115 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3URF _pdbx_database_status.recvd_initial_deposition_date 2011-11-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, X.Q.' 1 'Luan, X.D.' 2 'Lu, Q.Y.' 3 # _citation.id primary _citation.title 'Crystal Structure of Human RANKL Complexed with Its Decoy Receptor Osteoprotegerin' _citation.journal_abbrev J.Immunol. _citation.journal_volume 189 _citation.page_first 245 _citation.page_last 252 _citation.year 2012 _citation.journal_id_ASTM JOIMA3 _citation.country US _citation.journal_id_ISSN 0022-1767 _citation.journal_id_CSD 0952 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22664871 _citation.pdbx_database_id_DOI 10.4049/jimmunol.1103387 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Luan, X.D.' 1 ? primary 'Lu, Q.Y.' 2 ? primary 'Jiang, Y.N.' 3 ? primary 'Zhang, S.Y.' 4 ? primary 'Wang, Q.' 5 ? primary 'Yuan, H.H.' 6 ? primary 'Zhao, W.M.' 7 ? primary 'Wang, J.W.' 8 ? primary 'Wang, X.Q.' 9 ? # _cell.entry_id 3URF _cell.length_a 144.800 _cell.length_b 144.800 _cell.length_c 144.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3URF _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tumor necrosis factor ligand superfamily member 11, soluble form' 18424.529 1 ? ? 'UNP residues 162-317' ? 2 polymer man 'Tumor necrosis factor receptor superfamily member 11B' 19737.336 1 ? ? 'UNP residues 22-186' ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 36 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Osteoclast differentiation factor, ODF, Osteoprotegerin ligand, OPGL, Receptor activator of nuclear factor kappa-B ligand, RANKL, TNF-related activation-induced cytokine, TRANCE ; 2 'Osteoclastogenesis inhibitory factor, Osteoprotegerin' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVY VTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKVRDIDHHHH HH ; ;AQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVY VTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKVRDIDHHHH HH ; A ? 2 'polypeptide(L)' no no ;ETFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTH NRVCECKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGNATH DNICSHHHHHH ; ;ETFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTH NRVCECKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGNATH DNICSHHHHHH ; Z ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLN n 1 3 PRO n 1 4 PHE n 1 5 ALA n 1 6 HIS n 1 7 LEU n 1 8 THR n 1 9 ILE n 1 10 ASN n 1 11 ALA n 1 12 THR n 1 13 ASP n 1 14 ILE n 1 15 PRO n 1 16 SER n 1 17 GLY n 1 18 SER n 1 19 HIS n 1 20 LYS n 1 21 VAL n 1 22 SER n 1 23 LEU n 1 24 SER n 1 25 SER n 1 26 TRP n 1 27 TYR n 1 28 HIS n 1 29 ASP n 1 30 ARG n 1 31 GLY n 1 32 TRP n 1 33 ALA n 1 34 LYS n 1 35 ILE n 1 36 SER n 1 37 ASN n 1 38 MET n 1 39 THR n 1 40 PHE n 1 41 SER n 1 42 ASN n 1 43 GLY n 1 44 LYS n 1 45 LEU n 1 46 ILE n 1 47 VAL n 1 48 ASN n 1 49 GLN n 1 50 ASP n 1 51 GLY n 1 52 PHE n 1 53 TYR n 1 54 TYR n 1 55 LEU n 1 56 TYR n 1 57 ALA n 1 58 ASN n 1 59 ILE n 1 60 CYS n 1 61 PHE n 1 62 ARG n 1 63 HIS n 1 64 HIS n 1 65 GLU n 1 66 THR n 1 67 SER n 1 68 GLY n 1 69 ASP n 1 70 LEU n 1 71 ALA n 1 72 THR n 1 73 GLU n 1 74 TYR n 1 75 LEU n 1 76 GLN n 1 77 LEU n 1 78 MET n 1 79 VAL n 1 80 TYR n 1 81 VAL n 1 82 THR n 1 83 LYS n 1 84 THR n 1 85 SER n 1 86 ILE n 1 87 LYS n 1 88 ILE n 1 89 PRO n 1 90 SER n 1 91 SER n 1 92 HIS n 1 93 THR n 1 94 LEU n 1 95 MET n 1 96 LYS n 1 97 GLY n 1 98 GLY n 1 99 SER n 1 100 THR n 1 101 LYS n 1 102 TYR n 1 103 TRP n 1 104 SER n 1 105 GLY n 1 106 ASN n 1 107 SER n 1 108 GLU n 1 109 PHE n 1 110 HIS n 1 111 PHE n 1 112 TYR n 1 113 SER n 1 114 ILE n 1 115 ASN n 1 116 VAL n 1 117 GLY n 1 118 GLY n 1 119 PHE n 1 120 PHE n 1 121 LYS n 1 122 LEU n 1 123 ARG n 1 124 SER n 1 125 GLY n 1 126 GLU n 1 127 GLU n 1 128 ILE n 1 129 SER n 1 130 ILE n 1 131 GLU n 1 132 VAL n 1 133 SER n 1 134 ASN n 1 135 PRO n 1 136 SER n 1 137 LEU n 1 138 LEU n 1 139 ASP n 1 140 PRO n 1 141 ASP n 1 142 GLN n 1 143 ASP n 1 144 ALA n 1 145 THR n 1 146 TYR n 1 147 PHE n 1 148 GLY n 1 149 ALA n 1 150 PHE n 1 151 LYS n 1 152 VAL n 1 153 ARG n 1 154 ASP n 1 155 ILE n 1 156 ASP n 1 157 HIS n 1 158 HIS n 1 159 HIS n 1 160 HIS n 1 161 HIS n 1 162 HIS n 2 1 GLU n 2 2 THR n 2 3 PHE n 2 4 PRO n 2 5 PRO n 2 6 LYS n 2 7 TYR n 2 8 LEU n 2 9 HIS n 2 10 TYR n 2 11 ASP n 2 12 GLU n 2 13 GLU n 2 14 THR n 2 15 SER n 2 16 HIS n 2 17 GLN n 2 18 LEU n 2 19 LEU n 2 20 CYS n 2 21 ASP n 2 22 LYS n 2 23 CYS n 2 24 PRO n 2 25 PRO n 2 26 GLY n 2 27 THR n 2 28 TYR n 2 29 LEU n 2 30 LYS n 2 31 GLN n 2 32 HIS n 2 33 CYS n 2 34 THR n 2 35 ALA n 2 36 LYS n 2 37 TRP n 2 38 LYS n 2 39 THR n 2 40 VAL n 2 41 CYS n 2 42 ALA n 2 43 PRO n 2 44 CYS n 2 45 PRO n 2 46 ASP n 2 47 HIS n 2 48 TYR n 2 49 TYR n 2 50 THR n 2 51 ASP n 2 52 SER n 2 53 TRP n 2 54 HIS n 2 55 THR n 2 56 SER n 2 57 ASP n 2 58 GLU n 2 59 CYS n 2 60 LEU n 2 61 TYR n 2 62 CYS n 2 63 SER n 2 64 PRO n 2 65 VAL n 2 66 CYS n 2 67 LYS n 2 68 GLU n 2 69 LEU n 2 70 GLN n 2 71 TYR n 2 72 VAL n 2 73 LYS n 2 74 GLN n 2 75 GLU n 2 76 CYS n 2 77 ASN n 2 78 ARG n 2 79 THR n 2 80 HIS n 2 81 ASN n 2 82 ARG n 2 83 VAL n 2 84 CYS n 2 85 GLU n 2 86 CYS n 2 87 LYS n 2 88 GLU n 2 89 GLY n 2 90 ARG n 2 91 TYR n 2 92 LEU n 2 93 GLU n 2 94 ILE n 2 95 GLU n 2 96 PHE n 2 97 CYS n 2 98 LEU n 2 99 LYS n 2 100 HIS n 2 101 ARG n 2 102 SER n 2 103 CYS n 2 104 PRO n 2 105 PRO n 2 106 GLY n 2 107 PHE n 2 108 GLY n 2 109 VAL n 2 110 VAL n 2 111 GLN n 2 112 ALA n 2 113 GLY n 2 114 THR n 2 115 PRO n 2 116 GLU n 2 117 ARG n 2 118 ASN n 2 119 THR n 2 120 VAL n 2 121 CYS n 2 122 LYS n 2 123 ARG n 2 124 CYS n 2 125 PRO n 2 126 ASP n 2 127 GLY n 2 128 PHE n 2 129 PHE n 2 130 SER n 2 131 ASN n 2 132 GLU n 2 133 THR n 2 134 SER n 2 135 SER n 2 136 LYS n 2 137 ALA n 2 138 PRO n 2 139 CYS n 2 140 ARG n 2 141 LYS n 2 142 HIS n 2 143 THR n 2 144 ASN n 2 145 CYS n 2 146 SER n 2 147 VAL n 2 148 PHE n 2 149 GLY n 2 150 LEU n 2 151 LEU n 2 152 LEU n 2 153 THR n 2 154 GLN n 2 155 LYS n 2 156 GLY n 2 157 ASN n 2 158 ALA n 2 159 THR n 2 160 HIS n 2 161 ASP n 2 162 ASN n 2 163 ILE n 2 164 CYS n 2 165 SER n 2 166 HIS n 2 167 HIS n 2 168 HIS n 2 169 HIS n 2 170 HIS n 2 171 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'TNFSF11, OPGL, RANKL, TRANCE' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? ? ? ? 2 1 sample ? ? ? human ? 'TNFRSF11B, OCIF, OPG' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Spodoptera frugiperda' 7108 ? ? ? ? ? ? ? ? ? ? ? ? ? ? baculovirus ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TNF11_HUMAN O14788 1 ;AQPFAHLTINATDIPSGSHKVSLSSWYHDRGWAKISNMTFSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVY VTKTSIKIPSSHTLMKGGSTKYWSGNSEFHFYSINVGGFFKLRSGEEISIEVSNPSLLDPDQDATYFGAFKVRDID ; 162 ? 2 UNP TR11B_HUMAN O00300 2 ;ETFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAKWKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTH NRVCECKEGRYLEIEFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKGNATH DNICS ; 22 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3URF A 1 ? 156 ? O14788 162 ? 317 ? 162 317 2 2 3URF Z 1 ? 165 ? O00300 22 ? 186 ? 1 165 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3URF HIS A 157 ? UNP O14788 ? ? 'expression tag' 318 1 1 3URF HIS A 158 ? UNP O14788 ? ? 'expression tag' 319 2 1 3URF HIS A 159 ? UNP O14788 ? ? 'expression tag' 320 3 1 3URF HIS A 160 ? UNP O14788 ? ? 'expression tag' 321 4 1 3URF HIS A 161 ? UNP O14788 ? ? 'expression tag' 322 5 1 3URF HIS A 162 ? UNP O14788 ? ? 'expression tag' 323 6 2 3URF HIS Z 166 ? UNP O00300 ? ? 'expression tag' 166 7 2 3URF HIS Z 167 ? UNP O00300 ? ? 'expression tag' 167 8 2 3URF HIS Z 168 ? UNP O00300 ? ? 'expression tag' 168 9 2 3URF HIS Z 169 ? UNP O00300 ? ? 'expression tag' 169 10 2 3URF HIS Z 170 ? UNP O00300 ? ? 'expression tag' 170 11 2 3URF HIS Z 171 ? UNP O00300 ? ? 'expression tag' 171 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3URF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_percent_sol 62.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;2M NaCl, 100mM MES pH 6.5, 100mM Sodium phosphate monobasic monohydrate, 100mM Potassium phosphate monobasic, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-10-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3URF _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 40.16 _reflns.d_resolution_high 2.7 _reflns.number_obs 14783 _reflns.number_all 14808 _reflns.percent_possible_obs 99.83 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 63.90 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.80 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3URF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14783 _refine.ls_number_reflns_all 14783 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.160 _refine.ls_d_res_high 2.701 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.2048 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2023 _refine.ls_R_factor_R_free 0.2514 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.06 _refine.ls_number_reflns_R_free 748 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 80.0395 _refine.aniso_B[1][1] -0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] -0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.349 _refine.solvent_model_param_bsol 59.408 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.72 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.pdbx_overall_phase_error 24.86 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_FOM_work_R_set 0.8077 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2554 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 2604 _refine_hist.d_res_high 2.701 _refine_hist.d_res_low 40.160 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 2654 'X-RAY DIFFRACTION' ? f_angle_d 1.232 ? ? 3585 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.708 ? ? 955 'X-RAY DIFFRACTION' ? f_chiral_restr 0.085 ? ? 377 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 460 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' 5 2.7010 2.9095 2738 0.3358 100.00 0.3984 . . 147 . . . . 'X-RAY DIFFRACTION' 5 2.9095 3.2022 2743 0.2405 100.00 0.3226 . . 157 . . . . 'X-RAY DIFFRACTION' 5 3.2022 3.6653 2751 0.1879 100.00 0.2488 . . 163 . . . . 'X-RAY DIFFRACTION' 5 3.6653 4.6168 2808 0.1539 100.00 0.1986 . . 151 . . . . 'X-RAY DIFFRACTION' 5 4.6168 40.1647 2995 0.2127 99.00 0.2522 . . 130 . . . . # _struct.entry_id 3URF _struct.title 'Human RANKL/OPG complex' _struct.pdbx_descriptor 'Tumor necrosis factor ligand superfamily member 11, soluble form, Tumor necrosis factor receptor superfamily member 11B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3URF _struct_keywords.pdbx_keywords CYTOKINE _struct_keywords.text 'cystein-rich domain, beta-sandwich, CYTOKINE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 134 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 138 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 295 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 299 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? B CYS 20 SG ? ? ? 1_555 B CYS 33 SG ? ? Z CYS 20 Z CYS 33 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf2 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 41 SG ? ? Z CYS 23 Z CYS 41 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf3 disulf ? ? B CYS 44 SG ? ? ? 1_555 B CYS 59 SG ? ? Z CYS 44 Z CYS 59 1_555 ? ? ? ? ? ? ? 2.051 ? ? disulf4 disulf ? ? B CYS 62 SG ? ? ? 1_555 B CYS 76 SG ? ? Z CYS 62 Z CYS 76 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf5 disulf ? ? B CYS 66 SG ? ? ? 1_555 B CYS 84 SG ? ? Z CYS 66 Z CYS 84 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf6 disulf ? ? B CYS 86 SG ? ? ? 1_555 B CYS 97 SG ? ? Z CYS 86 Z CYS 97 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf7 disulf ? ? B CYS 103 SG ? ? ? 1_555 B CYS 121 SG ? ? Z CYS 103 Z CYS 121 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf8 disulf ? ? B CYS 124 SG ? ? ? 1_555 B CYS 139 SG ? ? Z CYS 124 Z CYS 139 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf9 disulf ? ? B CYS 145 SG ? ? ? 1_555 B CYS 164 SG ? ? Z CYS 145 Z CYS 164 1_555 ? ? ? ? ? ? ? 2.031 ? ? covale1 covale one ? B ASN 157 ND2 ? ? ? 1_555 C NAG . C1 ? ? Z ASN 157 Z NAG 201 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 63 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 63 _struct_mon_prot_cis.auth_asym_id Z _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 64 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 64 _struct_mon_prot_cis.pdbx_auth_asym_id_2 Z _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.55 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 4 ? D ? 4 ? E ? 2 ? F ? 2 ? G ? 2 ? H ? 2 ? I ? 2 ? J ? 2 ? K ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel H 1 2 ? anti-parallel I 1 2 ? anti-parallel J 1 2 ? anti-parallel K 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 26 ? TYR A 27 ? TRP A 187 TYR A 188 A 2 PHE A 4 ? ILE A 9 ? PHE A 165 ILE A 170 A 3 LYS A 34 ? SER A 36 ? LYS A 195 SER A 197 B 1 TRP A 26 ? TYR A 27 ? TRP A 187 TYR A 188 B 2 PHE A 4 ? ILE A 9 ? PHE A 165 ILE A 170 B 3 TYR A 146 ? ARG A 153 ? TYR A 307 ARG A 314 B 4 GLY A 51 ? HIS A 64 ? GLY A 212 HIS A 225 B 5 PHE A 109 ? LEU A 122 ? PHE A 270 LEU A 283 C 1 VAL A 21 ? LEU A 23 ? VAL A 182 LEU A 184 C 2 GLU A 126 ? VAL A 132 ? GLU A 287 VAL A 293 C 3 LYS A 44 ? VAL A 47 ? LYS A 205 VAL A 208 C 4 MET A 38 ? SER A 41 ? MET A 199 SER A 202 D 1 VAL A 21 ? LEU A 23 ? VAL A 182 LEU A 184 D 2 GLU A 126 ? VAL A 132 ? GLU A 287 VAL A 293 D 3 TYR A 74 ? SER A 85 ? TYR A 235 SER A 246 D 4 HIS A 92 ? TYR A 102 ? HIS A 253 TYR A 263 E 1 LEU B 8 ? TYR B 10 ? LEU Z 8 TYR Z 10 E 2 LEU B 19 ? ASP B 21 ? LEU Z 19 ASP Z 21 F 1 THR B 27 ? GLN B 31 ? THR Z 27 GLN Z 31 F 2 VAL B 40 ? PRO B 43 ? VAL Z 40 PRO Z 43 G 1 TYR B 48 ? TYR B 49 ? TYR Z 48 TYR Z 49 G 2 LEU B 60 ? TYR B 61 ? LEU Z 60 TYR Z 61 H 1 GLN B 70 ? GLN B 74 ? GLN Z 70 GLN Z 74 H 2 VAL B 83 ? CYS B 86 ? VAL Z 83 CYS Z 86 I 1 ARG B 90 ? GLU B 93 ? ARG Z 90 GLU Z 93 I 2 PHE B 96 ? LYS B 99 ? PHE Z 96 LYS Z 99 J 1 PHE B 107 ? GLN B 111 ? PHE Z 107 GLN Z 111 J 2 VAL B 120 ? ARG B 123 ? VAL Z 120 ARG Z 123 K 1 PHE B 128 ? PHE B 129 ? PHE Z 128 PHE Z 129 K 2 ARG B 140 ? LYS B 141 ? ARG Z 140 LYS Z 141 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 27 ? O TYR A 188 N THR A 8 ? N THR A 169 A 2 3 N PHE A 4 ? N PHE A 165 O SER A 36 ? O SER A 197 B 1 2 O TYR A 27 ? O TYR A 188 N THR A 8 ? N THR A 169 B 2 3 N LEU A 7 ? N LEU A 168 O PHE A 147 ? O PHE A 308 B 3 4 O VAL A 152 ? O VAL A 313 N PHE A 52 ? N PHE A 213 B 4 5 N LEU A 55 ? N LEU A 216 O GLY A 118 ? O GLY A 279 C 1 2 N LEU A 23 ? N LEU A 184 O ILE A 130 ? O ILE A 291 C 2 3 O GLU A 126 ? O GLU A 287 N VAL A 47 ? N VAL A 208 C 3 4 O ILE A 46 ? O ILE A 207 N THR A 39 ? N THR A 200 D 1 2 N LEU A 23 ? N LEU A 184 O ILE A 130 ? O ILE A 291 D 2 3 O SER A 129 ? O SER A 290 N THR A 82 ? N THR A 243 D 3 4 N VAL A 81 ? N VAL A 242 O LEU A 94 ? O LEU A 255 E 1 2 N HIS B 9 ? N HIS Z 9 O CYS B 20 ? O CYS Z 20 F 1 2 N LYS B 30 ? N LYS Z 30 O VAL B 40 ? O VAL Z 40 G 1 2 N TYR B 49 ? N TYR Z 49 O LEU B 60 ? O LEU Z 60 H 1 2 N GLN B 74 ? N GLN Z 74 O VAL B 83 ? O VAL Z 83 I 1 2 N GLU B 93 ? N GLU Z 93 O PHE B 96 ? O PHE Z 96 J 1 2 N VAL B 110 ? N VAL Z 110 O VAL B 120 ? O VAL Z 120 K 1 2 N PHE B 129 ? N PHE Z 129 O ARG B 140 ? O ARG Z 140 # _database_PDB_matrix.entry_id 3URF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3URF _atom_sites.fract_transf_matrix[1][1] 0.006906 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006906 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006906 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 162 162 ALA ALA A . n A 1 2 GLN 2 163 163 GLN GLN A . n A 1 3 PRO 3 164 164 PRO PRO A . n A 1 4 PHE 4 165 165 PHE PHE A . n A 1 5 ALA 5 166 166 ALA ALA A . n A 1 6 HIS 6 167 167 HIS HIS A . n A 1 7 LEU 7 168 168 LEU LEU A . n A 1 8 THR 8 169 169 THR THR A . n A 1 9 ILE 9 170 170 ILE ILE A . n A 1 10 ASN 10 171 171 ASN ASN A . n A 1 11 ALA 11 172 172 ALA ALA A . n A 1 12 THR 12 173 173 THR THR A . n A 1 13 ASP 13 174 174 ASP ASP A . n A 1 14 ILE 14 175 175 ILE ILE A . n A 1 15 PRO 15 176 176 PRO PRO A . n A 1 16 SER 16 177 177 SER SER A . n A 1 17 GLY 17 178 178 GLY GLY A . n A 1 18 SER 18 179 179 SER SER A . n A 1 19 HIS 19 180 180 HIS HIS A . n A 1 20 LYS 20 181 181 LYS LYS A . n A 1 21 VAL 21 182 182 VAL VAL A . n A 1 22 SER 22 183 183 SER SER A . n A 1 23 LEU 23 184 184 LEU LEU A . n A 1 24 SER 24 185 185 SER SER A . n A 1 25 SER 25 186 186 SER SER A . n A 1 26 TRP 26 187 187 TRP TRP A . n A 1 27 TYR 27 188 188 TYR TYR A . n A 1 28 HIS 28 189 189 HIS HIS A . n A 1 29 ASP 29 190 190 ASP ASP A . n A 1 30 ARG 30 191 191 ARG ARG A . n A 1 31 GLY 31 192 192 GLY GLY A . n A 1 32 TRP 32 193 193 TRP TRP A . n A 1 33 ALA 33 194 194 ALA ALA A . n A 1 34 LYS 34 195 195 LYS LYS A . n A 1 35 ILE 35 196 196 ILE ILE A . n A 1 36 SER 36 197 197 SER SER A . n A 1 37 ASN 37 198 198 ASN ASN A . n A 1 38 MET 38 199 199 MET MET A . n A 1 39 THR 39 200 200 THR THR A . n A 1 40 PHE 40 201 201 PHE PHE A . n A 1 41 SER 41 202 202 SER SER A . n A 1 42 ASN 42 203 203 ASN ASN A . n A 1 43 GLY 43 204 204 GLY GLY A . n A 1 44 LYS 44 205 205 LYS LYS A . n A 1 45 LEU 45 206 206 LEU LEU A . n A 1 46 ILE 46 207 207 ILE ILE A . n A 1 47 VAL 47 208 208 VAL VAL A . n A 1 48 ASN 48 209 209 ASN ASN A . n A 1 49 GLN 49 210 210 GLN GLN A . n A 1 50 ASP 50 211 211 ASP ASP A . n A 1 51 GLY 51 212 212 GLY GLY A . n A 1 52 PHE 52 213 213 PHE PHE A . n A 1 53 TYR 53 214 214 TYR TYR A . n A 1 54 TYR 54 215 215 TYR TYR A . n A 1 55 LEU 55 216 216 LEU LEU A . n A 1 56 TYR 56 217 217 TYR TYR A . n A 1 57 ALA 57 218 218 ALA ALA A . n A 1 58 ASN 58 219 219 ASN ASN A . n A 1 59 ILE 59 220 220 ILE ILE A . n A 1 60 CYS 60 221 221 CYS CYS A . n A 1 61 PHE 61 222 222 PHE PHE A . n A 1 62 ARG 62 223 223 ARG ARG A . n A 1 63 HIS 63 224 224 HIS HIS A . n A 1 64 HIS 64 225 225 HIS HIS A . n A 1 65 GLU 65 226 226 GLU GLU A . n A 1 66 THR 66 227 227 THR THR A . n A 1 67 SER 67 228 228 SER SER A . n A 1 68 GLY 68 229 229 GLY GLY A . n A 1 69 ASP 69 230 230 ASP ASP A . n A 1 70 LEU 70 231 231 LEU LEU A . n A 1 71 ALA 71 232 232 ALA ALA A . n A 1 72 THR 72 233 233 THR THR A . n A 1 73 GLU 73 234 234 GLU GLU A . n A 1 74 TYR 74 235 235 TYR TYR A . n A 1 75 LEU 75 236 236 LEU LEU A . n A 1 76 GLN 76 237 237 GLN GLN A . n A 1 77 LEU 77 238 238 LEU LEU A . n A 1 78 MET 78 239 239 MET MET A . n A 1 79 VAL 79 240 240 VAL VAL A . n A 1 80 TYR 80 241 241 TYR TYR A . n A 1 81 VAL 81 242 242 VAL VAL A . n A 1 82 THR 82 243 243 THR THR A . n A 1 83 LYS 83 244 244 LYS LYS A . n A 1 84 THR 84 245 245 THR THR A . n A 1 85 SER 85 246 246 SER SER A . n A 1 86 ILE 86 247 247 ILE ILE A . n A 1 87 LYS 87 248 248 LYS LYS A . n A 1 88 ILE 88 249 249 ILE ILE A . n A 1 89 PRO 89 250 250 PRO PRO A . n A 1 90 SER 90 251 251 SER SER A . n A 1 91 SER 91 252 252 SER SER A . n A 1 92 HIS 92 253 253 HIS HIS A . n A 1 93 THR 93 254 254 THR THR A . n A 1 94 LEU 94 255 255 LEU LEU A . n A 1 95 MET 95 256 256 MET MET A . n A 1 96 LYS 96 257 257 LYS LYS A . n A 1 97 GLY 97 258 258 GLY GLY A . n A 1 98 GLY 98 259 259 GLY GLY A . n A 1 99 SER 99 260 260 SER SER A . n A 1 100 THR 100 261 261 THR THR A . n A 1 101 LYS 101 262 262 LYS LYS A . n A 1 102 TYR 102 263 263 TYR TYR A . n A 1 103 TRP 103 264 264 TRP TRP A . n A 1 104 SER 104 265 265 SER SER A . n A 1 105 GLY 105 266 266 GLY GLY A . n A 1 106 ASN 106 267 267 ASN ASN A . n A 1 107 SER 107 268 268 SER SER A . n A 1 108 GLU 108 269 269 GLU GLU A . n A 1 109 PHE 109 270 270 PHE PHE A . n A 1 110 HIS 110 271 271 HIS HIS A . n A 1 111 PHE 111 272 272 PHE PHE A . n A 1 112 TYR 112 273 273 TYR TYR A . n A 1 113 SER 113 274 274 SER SER A . n A 1 114 ILE 114 275 275 ILE ILE A . n A 1 115 ASN 115 276 276 ASN ASN A . n A 1 116 VAL 116 277 277 VAL VAL A . n A 1 117 GLY 117 278 278 GLY GLY A . n A 1 118 GLY 118 279 279 GLY GLY A . n A 1 119 PHE 119 280 280 PHE PHE A . n A 1 120 PHE 120 281 281 PHE PHE A . n A 1 121 LYS 121 282 282 LYS LYS A . n A 1 122 LEU 122 283 283 LEU LEU A . n A 1 123 ARG 123 284 284 ARG ARG A . n A 1 124 SER 124 285 285 SER SER A . n A 1 125 GLY 125 286 286 GLY GLY A . n A 1 126 GLU 126 287 287 GLU GLU A . n A 1 127 GLU 127 288 288 GLU GLU A . n A 1 128 ILE 128 289 289 ILE ILE A . n A 1 129 SER 129 290 290 SER SER A . n A 1 130 ILE 130 291 291 ILE ILE A . n A 1 131 GLU 131 292 292 GLU GLU A . n A 1 132 VAL 132 293 293 VAL VAL A . n A 1 133 SER 133 294 294 SER SER A . n A 1 134 ASN 134 295 295 ASN ASN A . n A 1 135 PRO 135 296 296 PRO PRO A . n A 1 136 SER 136 297 297 SER SER A . n A 1 137 LEU 137 298 298 LEU LEU A . n A 1 138 LEU 138 299 299 LEU LEU A . n A 1 139 ASP 139 300 300 ASP ASP A . n A 1 140 PRO 140 301 301 PRO PRO A . n A 1 141 ASP 141 302 302 ASP ASP A . n A 1 142 GLN 142 303 303 GLN GLN A . n A 1 143 ASP 143 304 304 ASP ASP A . n A 1 144 ALA 144 305 305 ALA ALA A . n A 1 145 THR 145 306 306 THR THR A . n A 1 146 TYR 146 307 307 TYR TYR A . n A 1 147 PHE 147 308 308 PHE PHE A . n A 1 148 GLY 148 309 309 GLY GLY A . n A 1 149 ALA 149 310 310 ALA ALA A . n A 1 150 PHE 150 311 311 PHE PHE A . n A 1 151 LYS 151 312 312 LYS LYS A . n A 1 152 VAL 152 313 313 VAL VAL A . n A 1 153 ARG 153 314 314 ARG ARG A . n A 1 154 ASP 154 315 315 ASP ASP A . n A 1 155 ILE 155 316 316 ILE ILE A . n A 1 156 ASP 156 317 317 ASP ASP A . n A 1 157 HIS 157 318 ? ? ? A . n A 1 158 HIS 158 319 ? ? ? A . n A 1 159 HIS 159 320 ? ? ? A . n A 1 160 HIS 160 321 ? ? ? A . n A 1 161 HIS 161 322 ? ? ? A . n A 1 162 HIS 162 323 ? ? ? A . n B 2 1 GLU 1 1 ? ? ? Z . n B 2 2 THR 2 2 ? ? ? Z . n B 2 3 PHE 3 3 ? ? ? Z . n B 2 4 PRO 4 4 ? ? ? Z . n B 2 5 PRO 5 5 5 PRO PRO Z . n B 2 6 LYS 6 6 6 LYS LYS Z . n B 2 7 TYR 7 7 7 TYR TYR Z . n B 2 8 LEU 8 8 8 LEU LEU Z . n B 2 9 HIS 9 9 9 HIS HIS Z . n B 2 10 TYR 10 10 10 TYR TYR Z . n B 2 11 ASP 11 11 11 ASP ASP Z . n B 2 12 GLU 12 12 12 GLU GLU Z . n B 2 13 GLU 13 13 13 GLU GLU Z . n B 2 14 THR 14 14 14 THR THR Z . n B 2 15 SER 15 15 15 SER SER Z . n B 2 16 HIS 16 16 16 HIS HIS Z . n B 2 17 GLN 17 17 17 GLN GLN Z . n B 2 18 LEU 18 18 18 LEU LEU Z . n B 2 19 LEU 19 19 19 LEU LEU Z . n B 2 20 CYS 20 20 20 CYS CYS Z . n B 2 21 ASP 21 21 21 ASP ASP Z . n B 2 22 LYS 22 22 22 LYS LYS Z . n B 2 23 CYS 23 23 23 CYS CYS Z . n B 2 24 PRO 24 24 24 PRO PRO Z . n B 2 25 PRO 25 25 25 PRO PRO Z . n B 2 26 GLY 26 26 26 GLY GLY Z . n B 2 27 THR 27 27 27 THR THR Z . n B 2 28 TYR 28 28 28 TYR TYR Z . n B 2 29 LEU 29 29 29 LEU LEU Z . n B 2 30 LYS 30 30 30 LYS LYS Z . n B 2 31 GLN 31 31 31 GLN GLN Z . n B 2 32 HIS 32 32 32 HIS HIS Z . n B 2 33 CYS 33 33 33 CYS CYS Z . n B 2 34 THR 34 34 34 THR THR Z . n B 2 35 ALA 35 35 35 ALA ALA Z . n B 2 36 LYS 36 36 36 LYS LYS Z . n B 2 37 TRP 37 37 37 TRP TRP Z . n B 2 38 LYS 38 38 38 LYS LYS Z . n B 2 39 THR 39 39 39 THR THR Z . n B 2 40 VAL 40 40 40 VAL VAL Z . n B 2 41 CYS 41 41 41 CYS CYS Z . n B 2 42 ALA 42 42 42 ALA ALA Z . n B 2 43 PRO 43 43 43 PRO PRO Z . n B 2 44 CYS 44 44 44 CYS CYS Z . n B 2 45 PRO 45 45 45 PRO PRO Z . n B 2 46 ASP 46 46 46 ASP ASP Z . n B 2 47 HIS 47 47 47 HIS HIS Z . n B 2 48 TYR 48 48 48 TYR TYR Z . n B 2 49 TYR 49 49 49 TYR TYR Z . n B 2 50 THR 50 50 50 THR THR Z . n B 2 51 ASP 51 51 51 ASP ASP Z . n B 2 52 SER 52 52 52 SER SER Z . n B 2 53 TRP 53 53 53 TRP TRP Z . n B 2 54 HIS 54 54 54 HIS HIS Z . n B 2 55 THR 55 55 55 THR THR Z . n B 2 56 SER 56 56 56 SER SER Z . n B 2 57 ASP 57 57 57 ASP ASP Z . n B 2 58 GLU 58 58 58 GLU GLU Z . n B 2 59 CYS 59 59 59 CYS CYS Z . n B 2 60 LEU 60 60 60 LEU LEU Z . n B 2 61 TYR 61 61 61 TYR TYR Z . n B 2 62 CYS 62 62 62 CYS CYS Z . n B 2 63 SER 63 63 63 SER SER Z . n B 2 64 PRO 64 64 64 PRO PRO Z . n B 2 65 VAL 65 65 65 VAL VAL Z . n B 2 66 CYS 66 66 66 CYS CYS Z . n B 2 67 LYS 67 67 67 LYS LYS Z . n B 2 68 GLU 68 68 68 GLU GLU Z . n B 2 69 LEU 69 69 69 LEU LEU Z . n B 2 70 GLN 70 70 70 GLN GLN Z . n B 2 71 TYR 71 71 71 TYR TYR Z . n B 2 72 VAL 72 72 72 VAL VAL Z . n B 2 73 LYS 73 73 73 LYS LYS Z . n B 2 74 GLN 74 74 74 GLN GLN Z . n B 2 75 GLU 75 75 75 GLU GLU Z . n B 2 76 CYS 76 76 76 CYS CYS Z . n B 2 77 ASN 77 77 77 ASN ASN Z . n B 2 78 ARG 78 78 78 ARG ARG Z . n B 2 79 THR 79 79 79 THR THR Z . n B 2 80 HIS 80 80 80 HIS HIS Z . n B 2 81 ASN 81 81 81 ASN ASN Z . n B 2 82 ARG 82 82 82 ARG ARG Z . n B 2 83 VAL 83 83 83 VAL VAL Z . n B 2 84 CYS 84 84 84 CYS CYS Z . n B 2 85 GLU 85 85 85 GLU GLU Z . n B 2 86 CYS 86 86 86 CYS CYS Z . n B 2 87 LYS 87 87 87 LYS LYS Z . n B 2 88 GLU 88 88 88 GLU GLU Z . n B 2 89 GLY 89 89 89 GLY GLY Z . n B 2 90 ARG 90 90 90 ARG ARG Z . n B 2 91 TYR 91 91 91 TYR TYR Z . n B 2 92 LEU 92 92 92 LEU LEU Z . n B 2 93 GLU 93 93 93 GLU GLU Z . n B 2 94 ILE 94 94 94 ILE ILE Z . n B 2 95 GLU 95 95 95 GLU GLU Z . n B 2 96 PHE 96 96 96 PHE PHE Z . n B 2 97 CYS 97 97 97 CYS CYS Z . n B 2 98 LEU 98 98 98 LEU LEU Z . n B 2 99 LYS 99 99 99 LYS LYS Z . n B 2 100 HIS 100 100 100 HIS HIS Z . n B 2 101 ARG 101 101 101 ARG ARG Z . n B 2 102 SER 102 102 102 SER SER Z . n B 2 103 CYS 103 103 103 CYS CYS Z . n B 2 104 PRO 104 104 104 PRO PRO Z . n B 2 105 PRO 105 105 105 PRO PRO Z . n B 2 106 GLY 106 106 106 GLY GLY Z . n B 2 107 PHE 107 107 107 PHE PHE Z . n B 2 108 GLY 108 108 108 GLY GLY Z . n B 2 109 VAL 109 109 109 VAL VAL Z . n B 2 110 VAL 110 110 110 VAL VAL Z . n B 2 111 GLN 111 111 111 GLN GLN Z . n B 2 112 ALA 112 112 112 ALA ALA Z . n B 2 113 GLY 113 113 113 GLY GLY Z . n B 2 114 THR 114 114 114 THR THR Z . n B 2 115 PRO 115 115 115 PRO PRO Z . n B 2 116 GLU 116 116 116 GLU GLU Z . n B 2 117 ARG 117 117 117 ARG ARG Z . n B 2 118 ASN 118 118 118 ASN ASN Z . n B 2 119 THR 119 119 119 THR THR Z . n B 2 120 VAL 120 120 120 VAL VAL Z . n B 2 121 CYS 121 121 121 CYS CYS Z . n B 2 122 LYS 122 122 122 LYS LYS Z . n B 2 123 ARG 123 123 123 ARG ARG Z . n B 2 124 CYS 124 124 124 CYS CYS Z . n B 2 125 PRO 125 125 125 PRO PRO Z . n B 2 126 ASP 126 126 126 ASP ASP Z . n B 2 127 GLY 127 127 127 GLY GLY Z . n B 2 128 PHE 128 128 128 PHE PHE Z . n B 2 129 PHE 129 129 129 PHE PHE Z . n B 2 130 SER 130 130 130 SER SER Z . n B 2 131 ASN 131 131 131 ASN ASN Z . n B 2 132 GLU 132 132 132 GLU GLU Z . n B 2 133 THR 133 133 133 THR THR Z . n B 2 134 SER 134 134 134 SER SER Z . n B 2 135 SER 135 135 135 SER SER Z . n B 2 136 LYS 136 136 136 LYS LYS Z . n B 2 137 ALA 137 137 137 ALA ALA Z . n B 2 138 PRO 138 138 138 PRO PRO Z . n B 2 139 CYS 139 139 139 CYS CYS Z . n B 2 140 ARG 140 140 140 ARG ARG Z . n B 2 141 LYS 141 141 141 LYS LYS Z . n B 2 142 HIS 142 142 142 HIS HIS Z . n B 2 143 THR 143 143 143 THR THR Z . n B 2 144 ASN 144 144 144 ASN ASN Z . n B 2 145 CYS 145 145 145 CYS CYS Z . n B 2 146 SER 146 146 146 SER SER Z . n B 2 147 VAL 147 147 147 VAL VAL Z . n B 2 148 PHE 148 148 148 PHE PHE Z . n B 2 149 GLY 149 149 149 GLY GLY Z . n B 2 150 LEU 150 150 150 LEU LEU Z . n B 2 151 LEU 151 151 151 LEU LEU Z . n B 2 152 LEU 152 152 152 LEU LEU Z . n B 2 153 THR 153 153 153 THR THR Z . n B 2 154 GLN 154 154 154 GLN GLN Z . n B 2 155 LYS 155 155 155 LYS LYS Z . n B 2 156 GLY 156 156 156 GLY GLY Z . n B 2 157 ASN 157 157 157 ASN ASN Z . n B 2 158 ALA 158 158 158 ALA ALA Z . n B 2 159 THR 159 159 159 THR THR Z . n B 2 160 HIS 160 160 160 HIS HIS Z . n B 2 161 ASP 161 161 161 ASP ASP Z . n B 2 162 ASN 162 162 162 ASN ASN Z . n B 2 163 ILE 163 163 163 ILE ILE Z . n B 2 164 CYS 164 164 164 CYS CYS Z . n B 2 165 SER 165 165 165 SER SER Z . n B 2 166 HIS 166 166 166 HIS HIS Z . n B 2 167 HIS 167 167 167 HIS HIS Z . n B 2 168 HIS 168 168 168 HIS HIS Z . n B 2 169 HIS 169 169 ? ? ? Z . n B 2 170 HIS 170 170 ? ? ? Z . n B 2 171 HIS 171 171 ? ? ? Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 201 100 NAG NAG Z . D 4 HOH 1 401 1 HOH HOH A . D 4 HOH 2 402 2 HOH HOH A . D 4 HOH 3 403 3 HOH HOH A . D 4 HOH 4 404 4 HOH HOH A . D 4 HOH 5 405 8 HOH HOH A . D 4 HOH 6 406 9 HOH HOH A . D 4 HOH 7 407 10 HOH HOH A . D 4 HOH 8 408 11 HOH HOH A . D 4 HOH 9 409 12 HOH HOH A . D 4 HOH 10 410 13 HOH HOH A . D 4 HOH 11 411 14 HOH HOH A . D 4 HOH 12 412 18 HOH HOH A . D 4 HOH 13 413 19 HOH HOH A . D 4 HOH 14 414 21 HOH HOH A . D 4 HOH 15 415 22 HOH HOH A . D 4 HOH 16 416 23 HOH HOH A . D 4 HOH 17 417 24 HOH HOH A . D 4 HOH 18 418 28 HOH HOH A . D 4 HOH 19 419 30 HOH HOH A . D 4 HOH 20 420 31 HOH HOH A . D 4 HOH 21 421 32 HOH HOH A . D 4 HOH 22 422 33 HOH HOH A . D 4 HOH 23 423 34 HOH HOH A . D 4 HOH 24 424 35 HOH HOH A . E 4 HOH 1 301 5 HOH HOH Z . E 4 HOH 2 302 6 HOH HOH Z . E 4 HOH 3 303 7 HOH HOH Z . E 4 HOH 4 304 15 HOH HOH Z . E 4 HOH 5 305 16 HOH HOH Z . E 4 HOH 6 306 17 HOH HOH Z . E 4 HOH 7 307 20 HOH HOH Z . E 4 HOH 8 308 25 HOH HOH Z . E 4 HOH 9 309 26 HOH HOH Z . E 4 HOH 10 310 27 HOH HOH Z . E 4 HOH 11 311 29 HOH HOH Z . E 4 HOH 12 312 36 HOH HOH Z . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 157 _pdbx_struct_mod_residue.auth_asym_id Z _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 157 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6320 ? 1 MORE -23 ? 1 'SSA (A^2)' 18790 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-11 2 'Structure model' 1 1 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' entity 3 2 'Structure model' pdbx_chem_comp_identifier 4 2 'Structure model' pdbx_entity_nonpoly 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_ref_seq_dif 7 2 'Structure model' struct_site 8 2 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.name' 2 2 'Structure model' '_chem_comp.type' 3 2 'Structure model' '_entity.pdbx_description' 4 2 'Structure model' '_pdbx_entity_nonpoly.name' 5 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 2 'Structure model' '_struct_conn.pdbx_role' 7 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 8.8381 -0.6075 17.2613 0.2779 0.3548 0.2878 -0.0074 -0.0451 0.0706 3.7691 2.7247 3.2350 -0.2399 0.0892 0.0124 -0.0803 -0.5201 -0.2886 0.4776 -0.0488 -0.0401 0.2055 -0.0806 -0.0035 'X-RAY DIFFRACTION' 2 ? refined -14.0164 -6.4273 29.8520 0.3243 0.5155 0.3708 -0.0246 0.1191 0.1734 0.8755 0.8659 1.0451 -0.4491 0.1119 -0.3756 -0.3391 -0.4917 -0.4886 0.2077 0.2705 0.1241 0.0246 -0.3981 -0.0045 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain Z' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 Z _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 145 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 CB _pdbx_validate_close_contact.auth_asym_id_2 Z _pdbx_validate_close_contact.auth_comp_id_2 CYS _pdbx_validate_close_contact.auth_seq_id_2 164 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.67 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 180 ? ? -137.08 -148.02 2 1 ASP A 190 ? ? -147.70 56.58 3 1 ARG A 191 ? ? -173.10 136.31 4 1 ASN A 198 ? ? 48.67 27.71 5 1 ASN A 203 ? ? 34.95 36.61 6 1 ASP A 211 ? ? -47.56 154.39 7 1 SER A 228 ? ? -176.83 149.85 8 1 LYS A 248 ? ? 131.11 -48.09 9 1 ILE A 249 ? ? -107.11 74.89 10 1 TYR Z 7 ? ? 101.00 126.57 11 1 ASP Z 11 ? ? -129.29 -54.60 12 1 GLU Z 12 ? ? 76.50 71.61 13 1 GLU Z 13 ? ? -67.84 -175.02 14 1 SER Z 15 ? ? -65.87 -92.65 15 1 THR Z 34 ? ? -149.93 19.28 16 1 ALA Z 35 ? ? 66.72 106.43 17 1 LYS Z 36 ? ? 81.93 -15.88 18 1 HIS Z 54 ? ? -176.79 -172.30 19 1 THR Z 55 ? ? -142.18 -1.57 20 1 ILE Z 94 ? ? 62.79 -102.57 21 1 PRO Z 105 ? ? -53.12 -3.17 22 1 PRO Z 125 ? ? -51.38 172.11 23 1 SER Z 146 ? ? -27.36 -65.81 24 1 VAL Z 147 ? ? -82.13 -112.80 25 1 LEU Z 150 ? ? -116.12 -149.23 26 1 THR Z 153 ? ? -134.35 -32.96 27 1 ASN Z 157 ? ? -86.93 -154.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 318 ? A HIS 157 2 1 Y 1 A HIS 319 ? A HIS 158 3 1 Y 1 A HIS 320 ? A HIS 159 4 1 Y 1 A HIS 321 ? A HIS 160 5 1 Y 1 A HIS 322 ? A HIS 161 6 1 Y 1 A HIS 323 ? A HIS 162 7 1 Y 1 Z GLU 1 ? B GLU 1 8 1 Y 1 Z THR 2 ? B THR 2 9 1 Y 1 Z PHE 3 ? B PHE 3 10 1 Y 1 Z PRO 4 ? B PRO 4 11 1 Y 1 Z HIS 169 ? B HIS 169 12 1 Y 1 Z HIS 170 ? B HIS 170 13 1 Y 1 Z HIS 171 ? B HIS 171 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #