HEADER MEMBRANE PROTEIN 27-NOV-11 3UU2 TITLE SALMONELLA TYPHI OSMOPORIN(OMPC):AN OUTER MEMBRANE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN C; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PORIN OMPC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 STRAIN: TY21A; SOURCE 6 GENE: OMPC, STM2267; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21B+ KEYWDS BETA BARREL, NON SPECIFIC PORIN, OSMOPORIN, OUTER MEMBRANE, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PRASANTH,B.K.PUTCHA,A.AROCKIASAMY,S.KRISHNASWAMY REVDAT 2 08-NOV-23 3UU2 1 REMARK REVDAT 1 28-NOV-12 3UU2 0 JRNL AUTH P.PRASANTH,B.K.PUTCHA,A.AROCKIASAMY,S.KRISHNASWAMY JRNL TITL CRYSTAL STRUCTURE OF OUTER MEMBRANE PROTEIN OMPC FROM JRNL TITL 2 SALMONELLA TYPHI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.305 REMARK 3 R VALUE (WORKING SET) : 0.302 REMARK 3 FREE R VALUE : 0.358 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1170 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6988 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 97.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 225.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.96000 REMARK 3 B22 (A**2) : 7.52000 REMARK 3 B33 (A**2) : -14.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.748 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.857 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 130.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.876 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7144 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9663 ; 1.471 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 882 ; 7.421 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 396 ;42.137 ;25.076 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1042 ;23.251 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 971 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5739 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4341 ; 0.571 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6843 ; 1.104 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2803 ; 1.150 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2820 ; 1.997 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1194 -42.8784 25.1783 REMARK 3 T TENSOR REMARK 3 T11: 0.6887 T22: 0.5287 REMARK 3 T33: 0.7645 T12: -0.3760 REMARK 3 T13: 0.3839 T23: -0.4459 REMARK 3 L TENSOR REMARK 3 L11: 7.5299 L22: 4.6944 REMARK 3 L33: 13.0688 L12: -1.5963 REMARK 3 L13: -3.7559 L23: -0.2152 REMARK 3 S TENSOR REMARK 3 S11: -1.3339 S12: 1.2656 S13: -1.8558 REMARK 3 S21: -0.7128 S22: -0.1781 S23: -0.0467 REMARK 3 S31: 1.8538 S32: -0.7125 S33: 1.5121 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 357 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3387 -9.6100 30.0583 REMARK 3 T TENSOR REMARK 3 T11: 1.7876 T22: 1.3591 REMARK 3 T33: 0.5842 T12: -1.3527 REMARK 3 T13: 0.2981 T23: -0.3325 REMARK 3 L TENSOR REMARK 3 L11: 5.7201 L22: 4.4353 REMARK 3 L33: 8.4328 L12: 0.2118 REMARK 3 L13: -3.6892 L23: -1.3037 REMARK 3 S TENSOR REMARK 3 S11: 0.9894 S12: -0.2960 S13: 0.6286 REMARK 3 S21: -0.2053 S22: -0.2135 S23: -0.7380 REMARK 3 S31: -3.4699 S32: 2.7482 S33: -0.7759 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 357 REMARK 3 ORIGIN FOR THE GROUP (A): -38.0577 -9.2774 20.2161 REMARK 3 T TENSOR REMARK 3 T11: 2.1088 T22: 1.9805 REMARK 3 T33: 0.4828 T12: 1.2423 REMARK 3 T13: 0.0542 T23: 0.4207 REMARK 3 L TENSOR REMARK 3 L11: 4.8257 L22: 3.6957 REMARK 3 L33: 6.5554 L12: 1.0771 REMARK 3 L13: -1.6063 L23: -0.4801 REMARK 3 S TENSOR REMARK 3 S11: 0.7193 S12: 1.8282 S13: 0.5995 REMARK 3 S21: -0.8199 S22: -0.1206 S23: 0.6219 REMARK 3 S31: -3.3187 S32: -2.4214 S33: -0.5987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UU2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 77.03 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0048 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27261 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.330 REMARK 200 RESOLUTION RANGE LOW (A) : 100.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 12.10 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M NICKEL(II) CHLORIDE HEXAHYDRATE, REMARK 280 0.1M TRIS, 20% PEG MME 2000, PH 8.5, MICROBATCH UNDER OIL, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.10050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.28400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.10050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.28400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 VAL A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 ASN A 160 REMARK 465 THR A 161 REMARK 465 ASN A 162 REMARK 465 GLY A 163 REMARK 465 ARG A 164 REMARK 465 SER A 165 REMARK 465 LEU A 166 REMARK 465 LEU A 167 REMARK 465 ASN A 168 REMARK 465 GLN A 169 REMARK 465 ASN A 170 REMARK 465 ARG A 197 REMARK 465 THR A 198 REMARK 465 ALA A 199 REMARK 465 ASP A 200 REMARK 465 GLN A 201 REMARK 465 ASN A 202 REMARK 465 ASN A 203 REMARK 465 THR A 204 REMARK 465 ALA A 205 REMARK 465 ASN A 206 REMARK 465 ALA A 207 REMARK 465 ARG A 208 REMARK 465 LEU A 209 REMARK 465 TYR A 210 REMARK 465 GLY A 211 REMARK 465 ASN A 212 REMARK 465 GLY A 213 REMARK 465 ASP A 214 REMARK 465 ARG A 215 REMARK 465 ASN A 241 REMARK 465 ALA A 242 REMARK 465 THR A 243 REMARK 465 ARG A 244 REMARK 465 PHE A 245 REMARK 465 GLY A 246 REMARK 465 THR A 247 REMARK 465 SER A 248 REMARK 465 ASN A 249 REMARK 465 GLY A 250 REMARK 465 SER A 251 REMARK 465 ASN A 252 REMARK 465 PRO A 253 REMARK 465 SER A 254 REMARK 465 THR A 255 REMARK 465 SER A 256 REMARK 465 TYR A 257 REMARK 465 GLY A 258 REMARK 465 PHE A 259 REMARK 465 ALA A 260 REMARK 465 ASN A 261 REMARK 465 LYS A 262 REMARK 465 ASN B 153 REMARK 465 GLY B 154 REMARK 465 SER B 155 REMARK 465 VAL B 156 REMARK 465 SER B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 ASN B 160 REMARK 465 THR B 161 REMARK 465 ASN B 162 REMARK 465 GLY B 163 REMARK 465 ARG B 164 REMARK 465 SER B 165 REMARK 465 LEU B 166 REMARK 465 LEU B 167 REMARK 465 ASN B 168 REMARK 465 GLN B 169 REMARK 465 ASN B 170 REMARK 465 ARG B 197 REMARK 465 THR B 198 REMARK 465 ALA B 199 REMARK 465 ASP B 200 REMARK 465 GLN B 201 REMARK 465 ASN B 202 REMARK 465 ASN B 203 REMARK 465 THR B 204 REMARK 465 ALA B 205 REMARK 465 ASN B 206 REMARK 465 ALA B 207 REMARK 465 ARG B 208 REMARK 465 LEU B 209 REMARK 465 TYR B 210 REMARK 465 GLY B 211 REMARK 465 ASN B 212 REMARK 465 GLY B 213 REMARK 465 ASP B 214 REMARK 465 ARG B 215 REMARK 465 ASN B 241 REMARK 465 ALA B 242 REMARK 465 THR B 243 REMARK 465 ARG B 244 REMARK 465 PHE B 245 REMARK 465 GLY B 246 REMARK 465 THR B 247 REMARK 465 SER B 248 REMARK 465 ASN B 249 REMARK 465 GLY B 250 REMARK 465 SER B 251 REMARK 465 ASN B 252 REMARK 465 PRO B 253 REMARK 465 SER B 254 REMARK 465 THR B 255 REMARK 465 SER B 256 REMARK 465 TYR B 257 REMARK 465 GLY B 258 REMARK 465 PHE B 259 REMARK 465 ALA B 260 REMARK 465 ASN B 261 REMARK 465 LYS B 262 REMARK 465 ASN C 153 REMARK 465 GLY C 154 REMARK 465 SER C 155 REMARK 465 VAL C 156 REMARK 465 SER C 157 REMARK 465 GLY C 158 REMARK 465 GLU C 159 REMARK 465 ASN C 160 REMARK 465 THR C 161 REMARK 465 ASN C 162 REMARK 465 GLY C 163 REMARK 465 ARG C 164 REMARK 465 SER C 165 REMARK 465 LEU C 166 REMARK 465 LEU C 167 REMARK 465 ASN C 168 REMARK 465 GLN C 169 REMARK 465 ASN C 170 REMARK 465 ARG C 197 REMARK 465 THR C 198 REMARK 465 ALA C 199 REMARK 465 ASP C 200 REMARK 465 GLN C 201 REMARK 465 ASN C 202 REMARK 465 ASN C 203 REMARK 465 THR C 204 REMARK 465 ALA C 205 REMARK 465 ASN C 206 REMARK 465 ALA C 207 REMARK 465 ARG C 208 REMARK 465 LEU C 209 REMARK 465 TYR C 210 REMARK 465 GLY C 211 REMARK 465 ASN C 212 REMARK 465 GLY C 213 REMARK 465 ASP C 214 REMARK 465 ARG C 215 REMARK 465 ASN C 241 REMARK 465 ALA C 242 REMARK 465 THR C 243 REMARK 465 ARG C 244 REMARK 465 PHE C 245 REMARK 465 GLY C 246 REMARK 465 THR C 247 REMARK 465 SER C 248 REMARK 465 ASN C 249 REMARK 465 GLY C 250 REMARK 465 SER C 251 REMARK 465 ASN C 252 REMARK 465 PRO C 253 REMARK 465 SER C 254 REMARK 465 THR C 255 REMARK 465 SER C 256 REMARK 465 TYR C 257 REMARK 465 GLY C 258 REMARK 465 PHE C 259 REMARK 465 ALA C 260 REMARK 465 ASN C 261 REMARK 465 LYS C 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 187 CB OG REMARK 470 GLN A 238 CG CD OE1 NE2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 ILE A 292 CG2 REMARK 470 SER B 187 CB OG REMARK 470 GLN B 238 CG CD OE1 NE2 REMARK 470 SER C 187 CB OG REMARK 470 GLN C 238 CG CD OE1 NE2 REMARK 470 LYS C 288 CG CD CE NZ REMARK 470 LYS C 334 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 53 OD2 ASP C 89 1.92 REMARK 500 OE2 GLU B 57 NH2 ARG B 74 2.06 REMARK 500 O ASN A 47 N GLN A 49 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 1 CA ALA A 1 CB 0.132 REMARK 500 LYS B 334 CE LYS B 334 NZ 0.272 REMARK 500 ASP C 105 CB ASP C 105 CG 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 126.36 177.66 REMARK 500 LEU A 20 142.86 -170.82 REMARK 500 SER A 29 -35.31 -138.64 REMARK 500 THR A 44 110.62 -166.28 REMARK 500 ASP A 48 -26.88 -21.57 REMARK 500 GLN A 49 -64.29 -90.60 REMARK 500 GLU A 57 125.25 -177.06 REMARK 500 TRP A 72 135.53 176.50 REMARK 500 ALA A 83 101.38 -55.31 REMARK 500 ASP A 99 -39.81 -32.30 REMARK 500 VAL A 106 -6.07 -149.96 REMARK 500 PHE A 110 76.02 -100.66 REMARK 500 ASP A 113 -1.96 50.74 REMARK 500 PHE A 120 52.06 33.62 REMARK 500 MET A 121 -27.75 97.57 REMARK 500 GLN A 123 -145.09 -123.80 REMARK 500 PHE A 136 78.02 19.89 REMARK 500 TYR A 180 116.97 -163.39 REMARK 500 GLU A 184 -110.55 58.92 REMARK 500 PHE A 186 94.08 -60.10 REMARK 500 THR A 220 112.97 -172.98 REMARK 500 ALA A 227 152.65 160.84 REMARK 500 ASN A 228 57.41 35.67 REMARK 500 SER A 287 120.24 -170.30 REMARK 500 LYS A 290 -152.62 -135.35 REMARK 500 ALA A 298 102.04 83.56 REMARK 500 ILE A 305 -74.71 -83.76 REMARK 500 LYS A 334 106.91 -56.49 REMARK 500 THR A 338 21.23 -72.45 REMARK 500 LYS B 6 149.29 -170.80 REMARK 500 ASP B 7 43.10 39.87 REMARK 500 LEU B 11 90.00 -159.31 REMARK 500 LYS B 16 139.46 174.72 REMARK 500 GLN B 33 72.75 -117.16 REMARK 500 THR B 44 111.13 -160.29 REMARK 500 GLN B 49 -63.36 -104.48 REMARK 500 ASP B 84 -4.71 71.32 REMARK 500 ARG B 92 82.33 -55.20 REMARK 500 GLU B 109 -62.16 -129.45 REMARK 500 ASP B 113 15.43 40.03 REMARK 500 ASP B 118 2.34 83.46 REMARK 500 MET B 121 -3.89 71.71 REMARK 500 GLN B 123 -138.10 -146.81 REMARK 500 ARG B 124 179.57 -59.11 REMARK 500 TYR B 128 80.55 -58.35 REMARK 500 PHE B 136 95.19 34.70 REMARK 500 PHE B 137 16.74 42.96 REMARK 500 ASP B 172 166.60 -39.13 REMARK 500 TYR B 180 109.97 -161.32 REMARK 500 GLU B 184 -102.65 61.57 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3UU2 A 1 357 UNP P0A263 OMPC_SALTY 22 378 DBREF 3UU2 B 1 357 UNP P0A263 OMPC_SALTY 22 378 DBREF 3UU2 C 1 357 UNP P0A263 OMPC_SALTY 22 378 SEQRES 1 A 357 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS LEU ASP LEU SEQRES 2 A 357 PHE GLY LYS VAL ASP GLY LEU HIS TYR PHE SER ASP ASP SEQRES 3 A 357 LYS GLY SER ASP GLY ASP GLN THR TYR MET ARG ILE GLY SEQRES 4 A 357 PHE LYS GLY GLU THR GLN VAL ASN ASP GLN LEU THR GLY SEQRES 5 A 357 TYR GLY GLN TRP GLU TYR GLN ILE GLN GLY ASN GLN THR SEQRES 6 A 357 GLU GLY SER ASN ASP SER TRP THR ARG VAL ALA PHE ALA SEQRES 7 A 357 GLY LEU LYS PHE ALA ASP ALA GLY SER PHE ASP TYR GLY SEQRES 8 A 357 ARG ASN TYR GLY VAL THR TYR ASP VAL THR SER TRP THR SEQRES 9 A 357 ASP VAL LEU PRO GLU PHE GLY GLY ASP THR TYR GLY ALA SEQRES 10 A 357 ASP ASN PHE MET GLN GLN ARG GLY ASN GLY TYR ALA THR SEQRES 11 A 357 TYR ARG ASN THR ASP PHE PHE GLY LEU VAL ASP GLY LEU SEQRES 12 A 357 ASP PHE ALA LEU GLN TYR GLN GLY LYS ASN GLY SER VAL SEQRES 13 A 357 SER GLY GLU ASN THR ASN GLY ARG SER LEU LEU ASN GLN SEQRES 14 A 357 ASN GLY ASP GLY TYR GLY GLY SER LEU THR TYR ALA ILE SEQRES 15 A 357 GLY GLU GLY PHE SER VAL GLY GLY ALA ILE THR THR SER SEQRES 16 A 357 LYS ARG THR ALA ASP GLN ASN ASN THR ALA ASN ALA ARG SEQRES 17 A 357 LEU TYR GLY ASN GLY ASP ARG ALA THR VAL TYR THR GLY SEQRES 18 A 357 GLY LEU LYS TYR ASP ALA ASN ASN ILE TYR LEU ALA ALA SEQRES 19 A 357 GLN TYR SER GLN THR TYR ASN ALA THR ARG PHE GLY THR SEQRES 20 A 357 SER ASN GLY SER ASN PRO SER THR SER TYR GLY PHE ALA SEQRES 21 A 357 ASN LYS ALA GLN ASN PHE GLU VAL VAL ALA GLN TYR GLN SEQRES 22 A 357 PHE ASP PHE GLY LEU ARG PRO SER VAL ALA TYR LEU GLN SEQRES 23 A 357 SER LYS GLY LYS ASP ILE SER ASN GLY TYR GLY ALA SER SEQRES 24 A 357 TYR GLY ASP GLN ASP ILE VAL LYS TYR VAL ASP VAL GLY SEQRES 25 A 357 ALA THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL SEQRES 26 A 357 ASP TYR LYS ILE ASN LEU LEU ASP LYS ASN ASP PHE THR SEQRES 27 A 357 ARG ASP ALA GLY ILE ASN THR ASP ASP ILE VAL ALA LEU SEQRES 28 A 357 GLY LEU VAL TYR GLN PHE SEQRES 1 B 357 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS LEU ASP LEU SEQRES 2 B 357 PHE GLY LYS VAL ASP GLY LEU HIS TYR PHE SER ASP ASP SEQRES 3 B 357 LYS GLY SER ASP GLY ASP GLN THR TYR MET ARG ILE GLY SEQRES 4 B 357 PHE LYS GLY GLU THR GLN VAL ASN ASP GLN LEU THR GLY SEQRES 5 B 357 TYR GLY GLN TRP GLU TYR GLN ILE GLN GLY ASN GLN THR SEQRES 6 B 357 GLU GLY SER ASN ASP SER TRP THR ARG VAL ALA PHE ALA SEQRES 7 B 357 GLY LEU LYS PHE ALA ASP ALA GLY SER PHE ASP TYR GLY SEQRES 8 B 357 ARG ASN TYR GLY VAL THR TYR ASP VAL THR SER TRP THR SEQRES 9 B 357 ASP VAL LEU PRO GLU PHE GLY GLY ASP THR TYR GLY ALA SEQRES 10 B 357 ASP ASN PHE MET GLN GLN ARG GLY ASN GLY TYR ALA THR SEQRES 11 B 357 TYR ARG ASN THR ASP PHE PHE GLY LEU VAL ASP GLY LEU SEQRES 12 B 357 ASP PHE ALA LEU GLN TYR GLN GLY LYS ASN GLY SER VAL SEQRES 13 B 357 SER GLY GLU ASN THR ASN GLY ARG SER LEU LEU ASN GLN SEQRES 14 B 357 ASN GLY ASP GLY TYR GLY GLY SER LEU THR TYR ALA ILE SEQRES 15 B 357 GLY GLU GLY PHE SER VAL GLY GLY ALA ILE THR THR SER SEQRES 16 B 357 LYS ARG THR ALA ASP GLN ASN ASN THR ALA ASN ALA ARG SEQRES 17 B 357 LEU TYR GLY ASN GLY ASP ARG ALA THR VAL TYR THR GLY SEQRES 18 B 357 GLY LEU LYS TYR ASP ALA ASN ASN ILE TYR LEU ALA ALA SEQRES 19 B 357 GLN TYR SER GLN THR TYR ASN ALA THR ARG PHE GLY THR SEQRES 20 B 357 SER ASN GLY SER ASN PRO SER THR SER TYR GLY PHE ALA SEQRES 21 B 357 ASN LYS ALA GLN ASN PHE GLU VAL VAL ALA GLN TYR GLN SEQRES 22 B 357 PHE ASP PHE GLY LEU ARG PRO SER VAL ALA TYR LEU GLN SEQRES 23 B 357 SER LYS GLY LYS ASP ILE SER ASN GLY TYR GLY ALA SER SEQRES 24 B 357 TYR GLY ASP GLN ASP ILE VAL LYS TYR VAL ASP VAL GLY SEQRES 25 B 357 ALA THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL SEQRES 26 B 357 ASP TYR LYS ILE ASN LEU LEU ASP LYS ASN ASP PHE THR SEQRES 27 B 357 ARG ASP ALA GLY ILE ASN THR ASP ASP ILE VAL ALA LEU SEQRES 28 B 357 GLY LEU VAL TYR GLN PHE SEQRES 1 C 357 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS LEU ASP LEU SEQRES 2 C 357 PHE GLY LYS VAL ASP GLY LEU HIS TYR PHE SER ASP ASP SEQRES 3 C 357 LYS GLY SER ASP GLY ASP GLN THR TYR MET ARG ILE GLY SEQRES 4 C 357 PHE LYS GLY GLU THR GLN VAL ASN ASP GLN LEU THR GLY SEQRES 5 C 357 TYR GLY GLN TRP GLU TYR GLN ILE GLN GLY ASN GLN THR SEQRES 6 C 357 GLU GLY SER ASN ASP SER TRP THR ARG VAL ALA PHE ALA SEQRES 7 C 357 GLY LEU LYS PHE ALA ASP ALA GLY SER PHE ASP TYR GLY SEQRES 8 C 357 ARG ASN TYR GLY VAL THR TYR ASP VAL THR SER TRP THR SEQRES 9 C 357 ASP VAL LEU PRO GLU PHE GLY GLY ASP THR TYR GLY ALA SEQRES 10 C 357 ASP ASN PHE MET GLN GLN ARG GLY ASN GLY TYR ALA THR SEQRES 11 C 357 TYR ARG ASN THR ASP PHE PHE GLY LEU VAL ASP GLY LEU SEQRES 12 C 357 ASP PHE ALA LEU GLN TYR GLN GLY LYS ASN GLY SER VAL SEQRES 13 C 357 SER GLY GLU ASN THR ASN GLY ARG SER LEU LEU ASN GLN SEQRES 14 C 357 ASN GLY ASP GLY TYR GLY GLY SER LEU THR TYR ALA ILE SEQRES 15 C 357 GLY GLU GLY PHE SER VAL GLY GLY ALA ILE THR THR SER SEQRES 16 C 357 LYS ARG THR ALA ASP GLN ASN ASN THR ALA ASN ALA ARG SEQRES 17 C 357 LEU TYR GLY ASN GLY ASP ARG ALA THR VAL TYR THR GLY SEQRES 18 C 357 GLY LEU LYS TYR ASP ALA ASN ASN ILE TYR LEU ALA ALA SEQRES 19 C 357 GLN TYR SER GLN THR TYR ASN ALA THR ARG PHE GLY THR SEQRES 20 C 357 SER ASN GLY SER ASN PRO SER THR SER TYR GLY PHE ALA SEQRES 21 C 357 ASN LYS ALA GLN ASN PHE GLU VAL VAL ALA GLN TYR GLN SEQRES 22 C 357 PHE ASP PHE GLY LEU ARG PRO SER VAL ALA TYR LEU GLN SEQRES 23 C 357 SER LYS GLY LYS ASP ILE SER ASN GLY TYR GLY ALA SER SEQRES 24 C 357 TYR GLY ASP GLN ASP ILE VAL LYS TYR VAL ASP VAL GLY SEQRES 25 C 357 ALA THR TYR TYR PHE ASN LYS ASN MET SER THR TYR VAL SEQRES 26 C 357 ASP TYR LYS ILE ASN LEU LEU ASP LYS ASN ASP PHE THR SEQRES 27 C 357 ARG ASP ALA GLY ILE ASN THR ASP ASP ILE VAL ALA LEU SEQRES 28 C 357 GLY LEU VAL TYR GLN PHE HELIX 1 1 THR A 97 SER A 102 1 6 HELIX 2 2 TRP A 103 ASP A 105 5 3 HELIX 3 3 PHE A 136 LEU A 139 5 4 HELIX 4 4 ASP A 336 ALA A 341 1 6 HELIX 5 5 THR B 97 SER B 102 1 6 HELIX 6 6 TRP B 103 ASP B 105 5 3 HELIX 7 7 THR B 134 VAL B 140 1 7 HELIX 8 8 ASN B 335 ALA B 341 1 7 HELIX 9 9 THR C 97 SER C 102 1 6 HELIX 10 10 TRP C 103 ASP C 105 5 3 HELIX 11 11 ASN C 335 ALA C 341 1 7 CRYST1 182.201 108.568 113.391 90.00 117.83 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005488 0.000000 0.002898 0.00000 SCALE2 0.000000 0.009211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009973 0.00000