HEADER TRANSCRIPTION 29-NOV-11 3UV4 TITLE CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF HUMAN TRANSCRIPTION TITLE 2 INITIATION FACTOR TFIID SUBUNIT 1 (TAF1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECOND BROMODOMAIN OF HUMAN TRANSCRIPTION INITIATION FACTOR COMPND 3 TFIID SUBUNIT 1 (TAF1); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 1501-1635; COMPND 6 SYNONYM: CELL CYCLE GENE 1 PROTEIN, TBP-ASSOCIATED FACTOR 250 KDA, COMPND 7 P250, TRANSCRIPTION INITIATION FACTOR TFIID 250 KDA SUBUNIT, TAF(II) COMPND 8 250, TAFII-250, TAFII250; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BA2R, CCG1, CCGS, TAF1, TAF2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,S.PICAUD,T.KEATES,E.UGOCHUKWU,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 13-SEP-23 3UV4 1 REMARK SEQADV REVDAT 3 31-JAN-18 3UV4 1 AUTHOR REVDAT 2 11-APR-12 3UV4 1 JRNL REVDAT 1 14-MAR-12 3UV4 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,M.MANGOS,T.KEATES,J.P.LAMBERT, JRNL AUTH 2 D.BARSYTE-LOVEJOY,I.FELLETAR,R.VOLKMER,S.MULLER,T.PAWSON, JRNL AUTH 3 A.C.GINGRAS,C.H.ARROWSMITH,S.KNAPP JRNL TITL HISTONE RECOGNITION AND LARGE-SCALE STRUCTURAL ANALYSIS OF JRNL TITL 2 THE HUMAN BROMODOMAIN FAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 214 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22464331 JRNL DOI 10.1016/J.CELL.2012.02.013 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 33238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2084 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1340 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2835 ; 1.356 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3305 ; 0.955 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 4.889 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;44.662 ;25.922 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;12.505 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;21.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2285 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1267 ; 3.157 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 490 ; 1.090 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2081 ; 4.413 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 817 ; 6.803 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 754 ; 8.363 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1520 A 1550 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1290 -4.0383 35.1292 REMARK 3 T TENSOR REMARK 3 T11: 0.0934 T22: 0.0634 REMARK 3 T33: 0.0329 T12: -0.0225 REMARK 3 T13: 0.0138 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.0253 L22: 10.6150 REMARK 3 L33: 2.2138 L12: -1.1205 REMARK 3 L13: 0.5367 L23: -2.1580 REMARK 3 S TENSOR REMARK 3 S11: 0.1609 S12: 0.0027 S13: -0.1694 REMARK 3 S21: -0.2426 S22: -0.1272 S23: 0.0435 REMARK 3 S31: 0.2405 S32: 0.0533 S33: -0.0337 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1551 A 1644 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6353 3.0488 39.6947 REMARK 3 T TENSOR REMARK 3 T11: 0.0761 T22: 0.0928 REMARK 3 T33: 0.0371 T12: -0.0224 REMARK 3 T13: 0.0126 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 2.3397 L22: 4.9222 REMARK 3 L33: 2.4610 L12: -0.8640 REMARK 3 L13: -0.2736 L23: 0.9554 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: -0.0397 S13: -0.0475 REMARK 3 S21: 0.0587 S22: -0.0070 S23: -0.2654 REMARK 3 S31: 0.1069 S32: 0.2319 S33: -0.0641 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1520 B 1606 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6734 17.7232 55.1922 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0707 REMARK 3 T33: 0.0608 T12: -0.0088 REMARK 3 T13: 0.0082 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 4.6357 L22: 1.4083 REMARK 3 L33: 1.9289 L12: 0.2443 REMARK 3 L13: -0.0618 L23: -0.0870 REMARK 3 S TENSOR REMARK 3 S11: -0.1369 S12: -0.0607 S13: 0.2097 REMARK 3 S21: -0.0205 S22: 0.0878 S23: -0.0012 REMARK 3 S31: -0.1280 S32: -0.0639 S33: 0.0491 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1607 B 1645 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5609 8.6716 49.2886 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.1040 REMARK 3 T33: 0.0625 T12: -0.0390 REMARK 3 T13: 0.0381 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 10.8427 L22: 2.0914 REMARK 3 L33: 2.6142 L12: 0.3657 REMARK 3 L13: 2.8880 L23: 0.0415 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.0392 S13: -0.4189 REMARK 3 S21: -0.1206 S22: 0.0298 S23: 0.1539 REMARK 3 S31: 0.0804 S32: -0.2585 S33: -0.0071 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3UV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.52 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 28.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : 0.76300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: ENSEMBLE OF PDB ENTRIES 3HMH, 2GRC, 2OO1, 2OSS, REMARK 200 2OUO, 3DAI, 3D7C, 3DWY, 3G0L, 3GG3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056M NAH2PO4 1.344M K2HPO4, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1499 REMARK 465 HIS A 1500 REMARK 465 HIS A 1501 REMARK 465 HIS A 1502 REMARK 465 HIS A 1503 REMARK 465 HIS A 1504 REMARK 465 HIS A 1505 REMARK 465 SER A 1506 REMARK 465 SER A 1507 REMARK 465 GLY A 1508 REMARK 465 VAL A 1509 REMARK 465 ASP A 1510 REMARK 465 LEU A 1511 REMARK 465 GLY A 1512 REMARK 465 THR A 1513 REMARK 465 GLU A 1514 REMARK 465 ASN A 1515 REMARK 465 LEU A 1516 REMARK 465 TYR A 1517 REMARK 465 PHE A 1518 REMARK 465 GLN A 1519 REMARK 465 ALA A 1645 REMARK 465 ALA A 1646 REMARK 465 LEU A 1647 REMARK 465 GLU A 1648 REMARK 465 GLU A 1649 REMARK 465 ALA A 1650 REMARK 465 GLU A 1651 REMARK 465 LEU A 1652 REMARK 465 GLU A 1653 REMARK 465 SER A 1654 REMARK 465 LEU A 1655 REMARK 465 ASP A 1656 REMARK 465 MET B 1499 REMARK 465 HIS B 1500 REMARK 465 HIS B 1501 REMARK 465 HIS B 1502 REMARK 465 HIS B 1503 REMARK 465 HIS B 1504 REMARK 465 HIS B 1505 REMARK 465 SER B 1506 REMARK 465 SER B 1507 REMARK 465 GLY B 1508 REMARK 465 VAL B 1509 REMARK 465 ASP B 1510 REMARK 465 LEU B 1511 REMARK 465 GLY B 1512 REMARK 465 THR B 1513 REMARK 465 GLU B 1514 REMARK 465 ASN B 1515 REMARK 465 LEU B 1516 REMARK 465 TYR B 1517 REMARK 465 PHE B 1518 REMARK 465 GLN B 1519 REMARK 465 ALA B 1646 REMARK 465 LEU B 1647 REMARK 465 GLU B 1648 REMARK 465 GLU B 1649 REMARK 465 ALA B 1650 REMARK 465 GLU B 1651 REMARK 465 LEU B 1652 REMARK 465 GLU B 1653 REMARK 465 SER B 1654 REMARK 465 LEU B 1655 REMARK 465 ASP B 1656 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A1520 OG REMARK 470 LYS A1556 CD CE NZ REMARK 470 LYS A1563 CD CE NZ REMARK 470 LYS A1580 CE NZ REMARK 470 GLU A1587 CD OE1 OE2 REMARK 470 GLU A1630 CD OE1 OE2 REMARK 470 LYS A1637 CE NZ REMARK 470 LYS A1643 CG CD CE NZ REMARK 470 GLU A1644 CG CD OE1 OE2 REMARK 470 SER B1520 OG REMARK 470 MET B1521 CG SD CE REMARK 470 LYS B1556 CE NZ REMARK 470 LYS B1580 CE NZ REMARK 470 LYS B1582 CD CE NZ REMARK 470 LYS B1637 CD CE NZ REMARK 470 LYS B1643 CG CD CE NZ REMARK 470 GLU B1644 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 1627 O HOH B 133 1.96 REMARK 500 O HOH A 275 O HOH B 274 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1657 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UV2 RELATED DB: PDB REMARK 900 RELATED ID: 3UV5 RELATED DB: PDB REMARK 900 RELATED ID: 3UVD RELATED DB: PDB REMARK 900 RELATED ID: 3UVW RELATED DB: PDB REMARK 900 RELATED ID: 3UVX RELATED DB: PDB REMARK 900 RELATED ID: 3UVY RELATED DB: PDB DBREF 3UV4 A 1522 1656 UNP P21675 TAF1_HUMAN 1501 1635 DBREF 3UV4 B 1522 1656 UNP P21675 TAF1_HUMAN 1501 1635 SEQADV 3UV4 MET A 1499 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS A 1500 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS A 1501 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS A 1502 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS A 1503 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS A 1504 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS A 1505 UNP P21675 EXPRESSION TAG SEQADV 3UV4 SER A 1506 UNP P21675 EXPRESSION TAG SEQADV 3UV4 SER A 1507 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLY A 1508 UNP P21675 EXPRESSION TAG SEQADV 3UV4 VAL A 1509 UNP P21675 EXPRESSION TAG SEQADV 3UV4 ASP A 1510 UNP P21675 EXPRESSION TAG SEQADV 3UV4 LEU A 1511 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLY A 1512 UNP P21675 EXPRESSION TAG SEQADV 3UV4 THR A 1513 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLU A 1514 UNP P21675 EXPRESSION TAG SEQADV 3UV4 ASN A 1515 UNP P21675 EXPRESSION TAG SEQADV 3UV4 LEU A 1516 UNP P21675 EXPRESSION TAG SEQADV 3UV4 TYR A 1517 UNP P21675 EXPRESSION TAG SEQADV 3UV4 PHE A 1518 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLN A 1519 UNP P21675 EXPRESSION TAG SEQADV 3UV4 SER A 1520 UNP P21675 EXPRESSION TAG SEQADV 3UV4 MET A 1521 UNP P21675 EXPRESSION TAG SEQADV 3UV4 MET B 1499 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS B 1500 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS B 1501 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS B 1502 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS B 1503 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS B 1504 UNP P21675 EXPRESSION TAG SEQADV 3UV4 HIS B 1505 UNP P21675 EXPRESSION TAG SEQADV 3UV4 SER B 1506 UNP P21675 EXPRESSION TAG SEQADV 3UV4 SER B 1507 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLY B 1508 UNP P21675 EXPRESSION TAG SEQADV 3UV4 VAL B 1509 UNP P21675 EXPRESSION TAG SEQADV 3UV4 ASP B 1510 UNP P21675 EXPRESSION TAG SEQADV 3UV4 LEU B 1511 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLY B 1512 UNP P21675 EXPRESSION TAG SEQADV 3UV4 THR B 1513 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLU B 1514 UNP P21675 EXPRESSION TAG SEQADV 3UV4 ASN B 1515 UNP P21675 EXPRESSION TAG SEQADV 3UV4 LEU B 1516 UNP P21675 EXPRESSION TAG SEQADV 3UV4 TYR B 1517 UNP P21675 EXPRESSION TAG SEQADV 3UV4 PHE B 1518 UNP P21675 EXPRESSION TAG SEQADV 3UV4 GLN B 1519 UNP P21675 EXPRESSION TAG SEQADV 3UV4 SER B 1520 UNP P21675 EXPRESSION TAG SEQADV 3UV4 MET B 1521 UNP P21675 EXPRESSION TAG SEQRES 1 A 158 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 158 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASP ASP ASP SEQRES 3 A 158 GLN VAL ALA PHE SER PHE ILE LEU ASP ASN ILE VAL THR SEQRES 4 A 158 GLN LYS MET MET ALA VAL PRO ASP SER TRP PRO PHE HIS SEQRES 5 A 158 HIS PRO VAL ASN LYS LYS PHE VAL PRO ASP TYR TYR LYS SEQRES 6 A 158 VAL ILE VAL ASN PRO MET ASP LEU GLU THR ILE ARG LYS SEQRES 7 A 158 ASN ILE SER LYS HIS LYS TYR GLN SER ARG GLU SER PHE SEQRES 8 A 158 LEU ASP ASP VAL ASN LEU ILE LEU ALA ASN SER VAL LYS SEQRES 9 A 158 TYR ASN GLY PRO GLU SER GLN TYR THR LYS THR ALA GLN SEQRES 10 A 158 GLU ILE VAL ASN VAL CYS TYR GLN THR LEU THR GLU TYR SEQRES 11 A 158 ASP GLU HIS LEU THR GLN LEU GLU LYS ASP ILE CYS THR SEQRES 12 A 158 ALA LYS GLU ALA ALA LEU GLU GLU ALA GLU LEU GLU SER SEQRES 13 A 158 LEU ASP SEQRES 1 B 158 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 158 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASP ASP ASP SEQRES 3 B 158 GLN VAL ALA PHE SER PHE ILE LEU ASP ASN ILE VAL THR SEQRES 4 B 158 GLN LYS MET MET ALA VAL PRO ASP SER TRP PRO PHE HIS SEQRES 5 B 158 HIS PRO VAL ASN LYS LYS PHE VAL PRO ASP TYR TYR LYS SEQRES 6 B 158 VAL ILE VAL ASN PRO MET ASP LEU GLU THR ILE ARG LYS SEQRES 7 B 158 ASN ILE SER LYS HIS LYS TYR GLN SER ARG GLU SER PHE SEQRES 8 B 158 LEU ASP ASP VAL ASN LEU ILE LEU ALA ASN SER VAL LYS SEQRES 9 B 158 TYR ASN GLY PRO GLU SER GLN TYR THR LYS THR ALA GLN SEQRES 10 B 158 GLU ILE VAL ASN VAL CYS TYR GLN THR LEU THR GLU TYR SEQRES 11 B 158 ASP GLU HIS LEU THR GLN LEU GLU LYS ASP ILE CYS THR SEQRES 12 B 158 ALA LYS GLU ALA ALA LEU GLU GLU ALA GLU LEU GLU SER SEQRES 13 B 158 LEU ASP HET EDO A 2 4 HET GOL A 1 6 HET EDO B 1 4 HET EDO B 3 4 HET PO4 B1657 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 GOL C3 H8 O3 FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *305(H2 O) HELIX 1 1 ASP A 1522 LYS A 1539 1 18 HELIX 2 2 SER A 1546 HIS A 1550 5 5 HELIX 3 3 ASP A 1560 ILE A 1565 1 6 HELIX 4 4 ASP A 1570 LYS A 1580 1 11 HELIX 5 5 SER A 1585 GLY A 1605 1 21 HELIX 6 6 SER A 1608 TYR A 1628 1 21 HELIX 7 7 TYR A 1628 LYS A 1643 1 16 HELIX 8 8 ASP B 1522 LYS B 1539 1 18 HELIX 9 9 MET B 1540 VAL B 1543 5 4 HELIX 10 10 SER B 1546 HIS B 1550 5 5 HELIX 11 11 ASP B 1560 ILE B 1565 1 6 HELIX 12 12 ASP B 1570 LYS B 1580 1 11 HELIX 13 13 SER B 1585 ASN B 1604 1 20 HELIX 14 14 SER B 1608 TYR B 1628 1 21 HELIX 15 15 TYR B 1628 ALA B 1645 1 18 SITE 1 AC1 7 HOH A 22 HOH A 56 HOH A 263 HOH A 284 SITE 2 AC1 7 PHE A1530 PRO A1548 ASN A1604 SITE 1 AC2 8 HOH A 200 HOH A 261 HOH A 264 HOH A 276 SITE 2 AC2 8 ARG A1575 SER A1608 GLN A1609 TYR A1610 SITE 1 AC3 8 HOH B 83 HOH B 246 HOH B 302 HOH B 303 SITE 2 AC3 8 PHE B1530 PRO B1548 PHE B1549 ASN B1604 SITE 1 AC4 5 HOH B 142 HOH B 248 VAL B1526 GLN B1609 SITE 2 AC4 5 TYR B1610 SITE 1 AC5 5 HOH B 11 HOH B 32 HOH B 247 ARG B1575 SITE 2 AC5 5 SER B1608 CRYST1 57.450 57.800 123.570 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008093 0.00000