HEADER HYDROLASE/DNA 29-NOV-11 3UVF TITLE EXPANDING LAGALIDADG ENDONUCLEASE SCAFFOLD DIVERSITY BY RAPIDLY TITLE 2 SURVEYING EVOLUTIONARY SEQUENCE SPACE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTRON-ENCODED DNA ENDONUCLEASE I-HJEMI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: I-HJEMI; COMPND 5 SYNONYM: COB INTRON PROTEIN, MRNA MATURASE BI1, TRUNCATED NON- COMPND 6 FUNCTIONAL CYTOCHROME B, DNA ENDONUCLEASE/RNA MATURASE I-ANII; COMPND 7 EC: 3.1.-.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: SYNTHETIC OLIGO; COMPND 12 CHAIN: C, E; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SYNTHETIC OLIGO; COMPND 16 CHAIN: D, F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHODERMA REESEI; SOURCE 3 ORGANISM_TAXID: 51453; SOURCE 4 GENE: I-ANII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RIL+; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B(+); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC OLIGO; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC OLIGO KEYWDS LAGLIDAGD ENDONUCLEASE, HYDROLASE, DIVALENT METAL IONS, HYDROLASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.JACOBY,M.METZGER,B.SHEN,J.JARJOUR,B.STODDARD,A.SCHARENBERG REVDAT 5 13-SEP-23 3UVF 1 REMARK DBREF LINK REVDAT 4 01-AUG-12 3UVF 1 SOURCE REVDAT 3 18-JUL-12 3UVF 1 COMPND REVDAT 2 20-JUN-12 3UVF 1 JRNL REVDAT 1 29-FEB-12 3UVF 0 JRNL AUTH K.JACOBY,M.METZGER,B.W.SHEN,M.T.CERTO,J.JARJOUR, JRNL AUTH 2 B.L.STODDARD,A.M.SCHARENBERG JRNL TITL EXPANDING LAGLIDADG ENDONUCLEASE SCAFFOLD DIVERSITY BY JRNL TITL 2 RAPIDLY SURVEYING EVOLUTIONARY SEQUENCE SPACE. JRNL REF NUCLEIC ACIDS RES. V. 40 4954 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22334611 JRNL DOI 10.1093/NAR/GKR1303 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.285 REMARK 3 R VALUE (WORKING SET) : 0.280 REMARK 3 FREE R VALUE : 0.378 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1155 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1542 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.5280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4182 REMARK 3 NUCLEIC ACID ATOMS : 2284 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.646 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.568 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 67.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.757 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6863 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9725 ; 2.004 ; 2.394 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 7.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 189 ;35.675 ;23.968 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 829 ;20.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1083 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4297 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2537 ; 0.000 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4114 ; 0.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4326 ; 0.000 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5610 ; 0.000 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 256 REMARK 3 RESIDUE RANGE : A 301 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): -36.8800 17.8560 -43.5680 REMARK 3 T TENSOR REMARK 3 T11: 0.3025 T22: 0.4299 REMARK 3 T33: 0.7278 T12: 0.0075 REMARK 3 T13: 0.0391 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 4.1395 L22: 2.2308 REMARK 3 L33: 0.7358 L12: 0.5273 REMARK 3 L13: -0.8700 L23: 0.0635 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: -0.0884 S13: -0.0680 REMARK 3 S21: -0.1017 S22: -0.0570 S23: -0.5043 REMARK 3 S31: 0.0421 S32: 0.0702 S33: 0.0252 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 256 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 RESIDUE RANGE : E 501 E 502 REMARK 3 ORIGIN FOR THE GROUP (A): -21.9690 18.9090 -83.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.6713 T22: 0.7669 REMARK 3 T33: 0.9900 T12: -0.0232 REMARK 3 T13: 0.0279 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 4.3845 L22: 1.0950 REMARK 3 L33: 1.2687 L12: 0.4356 REMARK 3 L13: 1.1135 L23: 0.4049 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.0526 S13: 0.1206 REMARK 3 S21: -0.0448 S22: -0.0172 S23: -0.1394 REMARK 3 S31: -0.0033 S32: -0.1039 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 401 C 428 REMARK 3 ORIGIN FOR THE GROUP (A): -37.2130 20.5650 -32.9700 REMARK 3 T TENSOR REMARK 3 T11: 0.3645 T22: 0.5128 REMARK 3 T33: 0.8129 T12: -0.0048 REMARK 3 T13: -0.0017 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.3292 L22: 1.6220 REMARK 3 L33: 1.0298 L12: 0.2217 REMARK 3 L13: -0.7146 L23: 0.0307 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: -0.6793 S13: -0.1460 REMARK 3 S21: 0.1107 S22: -0.0381 S23: -0.4304 REMARK 3 S31: 0.0271 S32: 0.1262 S33: -0.0690 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 501 D 528 REMARK 3 ORIGIN FOR THE GROUP (A): -39.5800 20.8750 -33.3070 REMARK 3 T TENSOR REMARK 3 T11: 0.3583 T22: 0.5268 REMARK 3 T33: 0.6996 T12: -0.0076 REMARK 3 T13: -0.0019 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 8.2343 L22: 2.2625 REMARK 3 L33: 0.6974 L12: 0.0780 REMARK 3 L13: -0.9724 L23: 0.1537 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.4305 S13: 0.3962 REMARK 3 S21: 0.0944 S22: -0.0062 S23: -0.3148 REMARK 3 S31: -0.0738 S32: -0.0285 S33: -0.0398 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 401 E 428 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3610 16.1970 -73.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.7815 T22: 0.8765 REMARK 3 T33: 0.9992 T12: 0.0061 REMARK 3 T13: 0.0476 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 8.7338 L22: 0.7639 REMARK 3 L33: 0.6178 L12: -0.2744 REMARK 3 L13: -0.1995 L23: 0.0267 REMARK 3 S TENSOR REMARK 3 S11: -0.2133 S12: -0.6876 S13: 0.3283 REMARK 3 S21: 0.0343 S22: 0.0381 S23: -0.2028 REMARK 3 S31: 0.0811 S32: -0.2012 S33: 0.1752 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 501 F 528 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0330 15.8860 -74.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.6952 T22: 0.9708 REMARK 3 T33: 1.2551 T12: 0.0331 REMARK 3 T13: 0.0451 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 8.4639 L22: 0.0892 REMARK 3 L33: 0.2957 L12: -0.2347 REMARK 3 L13: 0.0816 L23: -0.1563 REMARK 3 S TENSOR REMARK 3 S11: -0.0592 S12: -0.4637 S13: -0.4104 REMARK 3 S21: -0.0371 S22: 0.0113 S23: -0.0467 REMARK 3 S31: 0.0423 S32: 0.0651 S33: 0.0479 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 501 C 526 REMARK 3 RESIDUE RANGE : E 601 E 626 REMARK 3 RESIDUE RANGE : A 401 A 443 REMARK 3 RESIDUE RANGE : B 401 B 444 REMARK 3 RESIDUE RANGE : D 601 D 609 REMARK 3 RESIDUE RANGE : F 701 F 726 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5290 19.0810 -61.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.3439 T22: 0.4835 REMARK 3 T33: 0.6687 T12: 0.0357 REMARK 3 T13: 0.0139 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.3539 L22: 0.0208 REMARK 3 L33: 0.4186 L12: -0.0041 REMARK 3 L13: -0.2659 L23: 0.0448 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: 0.0042 S13: 0.0614 REMARK 3 S21: 0.0002 S22: 0.0756 S23: -0.0154 REMARK 3 S31: 0.0945 S32: 0.0003 S33: -0.0544 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 304 REMARK 3 RESIDUE RANGE : B 302 B 304 REMARK 3 RESIDUE RANGE : E 503 E 503 REMARK 3 RESIDUE RANGE : F 601 F 601 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3700 14.9020 -80.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.3622 T22: 1.1458 REMARK 3 T33: 0.4155 T12: 0.2139 REMARK 3 T13: -0.2422 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 8.0499 L22: 12.6513 REMARK 3 L33: 14.9546 L12: -2.3141 REMARK 3 L13: -10.6061 L23: 0.4598 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: -0.7693 S13: -0.1194 REMARK 3 S21: -1.4733 S22: -0.2508 S23: -0.0431 REMARK 3 S31: 0.1696 S32: 0.5165 S33: 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : PH5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : RH/PT COATED MIRROR REMARK 200 OPTICS : SI(220), ASYMMETRIC CURVED REMARK 200 CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3EH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M AMMONIUM SULFATE, REMARK 280 0.1 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 90.79550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.79600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 90.79550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.79600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DC E 416 CA CA E 501 1.55 REMARK 500 O GLY B 17 OE2 GLU B 150 1.80 REMARK 500 OP2 DC D 508 O HOH D 604 1.83 REMARK 500 NZ LYS B 26 O6 DG E 406 2.04 REMARK 500 NZ LYS B 174 O THR B 198 2.08 REMARK 500 OE1 GLU A 150 OP1 DC C 416 2.15 REMARK 500 O3' DA F 507 O HOH F 707 2.16 REMARK 500 OD2 ASP A 99 NH2 ARG A 122 2.18 REMARK 500 O GLY B 19 NZ LYS B 96 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 407 O3' DA C 407 C3' -0.052 REMARK 500 DA C 410 O3' DA C 410 C3' -0.037 REMARK 500 DC C 426 O3' DC C 426 C3' -0.055 REMARK 500 DT D 521 O3' DT D 521 C3' -0.038 REMARK 500 DT E 417 O3' DT E 417 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 406 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG C 409 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 DA C 410 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DT C 414 C3' - C2' - C1' ANGL. DEV. = -7.2 DEGREES REMARK 500 DT C 415 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC C 416 N1 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 DC C 418 C1' - O4' - C4' ANGL. DEV. = -10.1 DEGREES REMARK 500 DC C 418 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 DT C 419 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 420 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 420 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DT C 422 C4 - C5 - C7 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT C 422 C6 - C5 - C7 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA C 424 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 425 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 425 N3 - C4 - C5 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC C 426 O4' - C1' - C2' ANGL. DEV. = -7.1 DEGREES REMARK 500 DG C 427 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DA C 428 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC D 503 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DT D 504 O4' - C4' - C3' ANGL. DEV. = -4.2 DEGREES REMARK 500 DT D 504 C1' - O4' - C4' ANGL. DEV. = -7.9 DEGREES REMARK 500 DT D 505 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT D 505 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT D 505 C4 - C5 - C7 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT D 505 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 DA D 506 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA D 507 O4' - C1' - N9 ANGL. DEV. = -4.5 DEGREES REMARK 500 DA D 509 C1' - O4' - C4' ANGL. DEV. = -7.5 DEGREES REMARK 500 DA D 509 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA D 509 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG D 510 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DG D 510 O4' - C1' - N9 ANGL. DEV. = -6.4 DEGREES REMARK 500 DA D 511 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DA D 511 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG D 512 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DA D 515 O5' - C5' - C4' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC D 516 O5' - P - OP2 ANGL. DEV. = -8.7 DEGREES REMARK 500 DC D 516 O5' - C5' - C4' ANGL. DEV. = -9.2 DEGREES REMARK 500 DC D 517 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC D 517 C6 - N1 - C2 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 518 O4' - C4' - C3' ANGL. DEV. = -4.5 DEGREES REMARK 500 DT D 518 N3 - C4 - O4 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC D 519 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC D 520 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 521 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA D 523 C4' - C3' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 DA D 523 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG D 524 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC D 525 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 119 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 3 -96.43 92.16 REMARK 500 MET A 4 77.86 -112.05 REMARK 500 LYS A 26 54.67 -154.60 REMARK 500 ASN A 64 -106.75 72.83 REMARK 500 SER A 94 -176.31 -66.88 REMARK 500 ALA A 121 126.33 -173.11 REMARK 500 PHE A 139 -51.84 -27.95 REMARK 500 LYS A 160 -49.63 -28.37 REMARK 500 ASP A 161 50.27 -96.95 REMARK 500 ASP A 175 62.35 31.92 REMARK 500 THR A 206 -4.49 -153.63 REMARK 500 PRO A 253 161.31 -47.46 REMARK 500 HIS B 3 -13.79 77.93 REMARK 500 MET B 4 101.91 -58.55 REMARK 500 ASP B 5 122.88 179.95 REMARK 500 ASP B 18 -15.48 -146.69 REMARK 500 SER B 22 99.84 -162.00 REMARK 500 ILE B 40 -45.31 -27.19 REMARK 500 LYS B 41 -12.35 -43.25 REMARK 500 LEU B 45 -80.77 -52.34 REMARK 500 LYS B 57 111.41 -162.88 REMARK 500 ASN B 64 -103.77 62.03 REMARK 500 ARG B 74 -7.86 -148.05 REMARK 500 LYS B 76 -58.21 -14.73 REMARK 500 LEU B 79 -80.39 -62.42 REMARK 500 PHE B 82 -67.11 -137.34 REMARK 500 SER B 94 -155.00 -99.29 REMARK 500 LYS B 96 3.13 -59.75 REMARK 500 ASN B 110 48.99 88.99 REMARK 500 ASP B 115 -39.28 -31.48 REMARK 500 ASP B 116 41.26 -79.92 REMARK 500 ARG B 122 104.11 12.58 REMARK 500 SER B 137 -78.38 -47.81 REMARK 500 PHE B 139 -59.88 -24.99 REMARK 500 ASN B 159 1.52 56.93 REMARK 500 LYS B 160 -60.65 75.63 REMARK 500 GLN B 173 119.81 -165.15 REMARK 500 ASP B 175 -4.43 58.89 REMARK 500 ASP B 177 -75.99 -61.60 REMARK 500 LYS B 249 -0.31 -140.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 157 LEU A 158 148.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 17 O REMARK 620 2 GLU A 150 OE1 73.6 REMARK 620 3 HOH A 415 O 117.7 156.3 REMARK 620 4 DC C 416 OP1 113.3 45.9 129.0 REMARK 620 5 DC D 516 OP2 77.5 83.4 118.5 71.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 17 O REMARK 620 2 ASP A 18 OD2 79.6 REMARK 620 3 GLU A 150 OE1 87.3 128.1 REMARK 620 4 DC C 416 OP1 100.6 174.1 46.2 REMARK 620 5 DT C 417 OP2 136.3 60.3 103.5 117.5 REMARK 620 6 DA D 515 O3' 78.5 60.6 161.8 125.3 94.6 REMARK 620 7 DC D 516 OP2 84.1 115.5 112.6 70.3 126.9 55.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD1 REMARK 620 2 ASP A 18 OD2 43.6 REMARK 620 3 ALA A 149 O 81.8 72.3 REMARK 620 4 DT C 417 OP1 136.2 98.4 110.2 REMARK 620 5 DT C 417 OP2 95.4 52.6 63.6 58.3 REMARK 620 6 DA D 515 OP1 75.4 102.1 150.6 99.2 136.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 18 OD1 REMARK 620 2 ASP B 18 OD2 44.1 REMARK 620 3 ALA B 149 O 79.8 90.9 REMARK 620 4 DT E 417 OP1 146.9 103.4 97.6 REMARK 620 5 DT E 417 OP2 95.3 59.3 69.9 53.9 REMARK 620 6 DA F 515 OP1 77.4 105.4 124.9 127.1 160.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 75 OD2 REMARK 620 2 ASN B 77 OD1 112.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 150 OE2 REMARK 620 2 HOH B 417 O 96.0 REMARK 620 3 DT E 415 O3' 118.0 144.5 REMARK 620 4 DC E 416 OP2 115.6 102.8 54.7 REMARK 620 5 DC F 516 OP2 53.8 122.5 88.2 133.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG E 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG F 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EHB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF Y2 I-ANII VARIANT (F13Y/S111Y)/DNA COMPLEX REMARK 900 WITH CALCIUM REMARK 900 RELATED ID: 1P8K RELATED DB: PDB REMARK 900 THE STRUCTURE AND DNA RECOGNITION OF A BIFUNCTIONAL HOMING REMARK 900 ENDONUCLEASE AND GROUP I INTRON SPLICING FACTOR REMARK 900 RELATED ID: 2QOJ RELATED DB: PDB REMARK 900 COEVOLUTION OF A HOMING ENDONUCLEASE AND ITS HOST TARGET SEQUENCE DBREF 3UVF A 2 256 PDB 3UVF 3UVF 2 256 DBREF 3UVF C 401 428 PDB 3UVF 3UVF 401 428 DBREF 3UVF D 501 528 PDB 3UVF 3UVF 501 528 DBREF 3UVF B 2 256 PDB 3UVF 3UVF 2 256 DBREF 3UVF E 401 428 PDB 3UVF 3UVF 401 428 DBREF 3UVF F 501 528 PDB 3UVF 3UVF 501 528 SEQRES 1 A 255 SER HIS MET ASP LEU THR TYR ALA TYR LEU VAL GLY LEU SEQRES 2 A 255 PHE GLU GLY ASP GLY TYR PHE SER ILE THR LYS LYS GLY SEQRES 3 A 255 LYS TYR LEU THR TYR GLU LEU GLY ILE GLU LEU SER ILE SEQRES 4 A 255 LYS ASP VAL GLN LEU ILE TYR LYS ILE LYS ASP ILE LEU SEQRES 5 A 255 GLY VAL GLY LYS VAL SER PHE ARG LYS ARG ASN GLU ILE SEQRES 6 A 255 GLU MET VAL SER LEU ARG ILE ARG ASP LYS ASN HIS LEU SEQRES 7 A 255 LYS ASN PHE ILE LEU PRO ILE PHE ASP LYS TYR PRO MET SEQRES 8 A 255 LEU SER ASN LYS GLN TYR ASP TYR LEU ARG PHE LYS ASP SEQRES 9 A 255 ALA LEU LEU SER ASN ILE ILE TYR SER ASP ASP LEU PRO SEQRES 10 A 255 GLU TYR ALA ARG SER ASN GLU SER ILE ASN SER VAL ASP SEQRES 11 A 255 SER ILE ILE ASN THR SER TYR PHE SER ALA TRP LEU VAL SEQRES 12 A 255 GLY PHE ILE GLU ALA GLU GLY CYS PHE SER THR TYR LYS SEQRES 13 A 255 LEU ASN LYS ASP ASP ASP TYR LEU ILE ALA SER PHE ASP SEQRES 14 A 255 ILE ALA GLN LYS ASP GLY ASP ILE LEU ILE SER ALA ILE SEQRES 15 A 255 HIS LYS TYR LEU SER PHE THR THR LYS ILE TYR LEU ASP SEQRES 16 A 255 LYS THR ASN CYS SER ARG LEU LYS VAL THR GLY VAL ARG SEQRES 17 A 255 SER VAL LYS ASN VAL VAL LYS PHE ILE GLN GLY ALA PRO SEQRES 18 A 255 VAL LYS LEU LEU GLY ASN LYS LYS LEU GLN TYR LYS LEU SEQRES 19 A 255 TRP ILE LYS GLN LEU ARG LYS ILE SER ARG TYR SER GLU SEQRES 20 A 255 LYS ILE GLN LEU PRO SER ASN TYR SEQRES 1 C 28 DG DC DG DC DT DG DA DG DG DA DG DG DT SEQRES 2 C 28 DT DT DC DT DC DT DG DT DT DA DA DG DC SEQRES 3 C 28 DG DA SEQRES 1 D 28 DC DG DC DT DT DA DA DC DA DG DA DG DA SEQRES 2 D 28 DA DA DC DC DT DC DC DT DC DA DG DC DG SEQRES 3 D 28 DC DT SEQRES 1 B 255 SER HIS MET ASP LEU THR TYR ALA TYR LEU VAL GLY LEU SEQRES 2 B 255 PHE GLU GLY ASP GLY TYR PHE SER ILE THR LYS LYS GLY SEQRES 3 B 255 LYS TYR LEU THR TYR GLU LEU GLY ILE GLU LEU SER ILE SEQRES 4 B 255 LYS ASP VAL GLN LEU ILE TYR LYS ILE LYS ASP ILE LEU SEQRES 5 B 255 GLY VAL GLY LYS VAL SER PHE ARG LYS ARG ASN GLU ILE SEQRES 6 B 255 GLU MET VAL SER LEU ARG ILE ARG ASP LYS ASN HIS LEU SEQRES 7 B 255 LYS ASN PHE ILE LEU PRO ILE PHE ASP LYS TYR PRO MET SEQRES 8 B 255 LEU SER ASN LYS GLN TYR ASP TYR LEU ARG PHE LYS ASP SEQRES 9 B 255 ALA LEU LEU SER ASN ILE ILE TYR SER ASP ASP LEU PRO SEQRES 10 B 255 GLU TYR ALA ARG SER ASN GLU SER ILE ASN SER VAL ASP SEQRES 11 B 255 SER ILE ILE ASN THR SER TYR PHE SER ALA TRP LEU VAL SEQRES 12 B 255 GLY PHE ILE GLU ALA GLU GLY CYS PHE SER THR TYR LYS SEQRES 13 B 255 LEU ASN LYS ASP ASP ASP TYR LEU ILE ALA SER PHE ASP SEQRES 14 B 255 ILE ALA GLN LYS ASP GLY ASP ILE LEU ILE SER ALA ILE SEQRES 15 B 255 HIS LYS TYR LEU SER PHE THR THR LYS ILE TYR LEU ASP SEQRES 16 B 255 LYS THR ASN CYS SER ARG LEU LYS VAL THR GLY VAL ARG SEQRES 17 B 255 SER VAL LYS ASN VAL VAL LYS PHE ILE GLN GLY ALA PRO SEQRES 18 B 255 VAL LYS LEU LEU GLY ASN LYS LYS LEU GLN TYR LYS LEU SEQRES 19 B 255 TRP ILE LYS GLN LEU ARG LYS ILE SER ARG TYR SER GLU SEQRES 20 B 255 LYS ILE GLN LEU PRO SER ASN TYR SEQRES 1 E 28 DG DC DG DC DT DG DA DG DG DA DG DG DT SEQRES 2 E 28 DT DT DC DT DC DT DG DT DT DA DA DG DC SEQRES 3 E 28 DG DA SEQRES 1 F 28 DC DG DC DT DT DA DA DC DA DG DA DG DA SEQRES 2 F 28 DA DA DC DC DT DC DC DT DC DA DG DC DG SEQRES 3 F 28 DC DT HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET PEG A 304 7 HET CA B 301 1 HET PEG B 302 7 HET SO4 B 303 5 HET NA B 304 1 HET CA E 501 1 HET CA E 502 1 HET PEG E 503 7 HET PEG F 601 7 HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 7 CA 6(CA 2+) FORMUL 10 PEG 4(C4 H10 O3) FORMUL 13 SO4 O4 S 2- FORMUL 14 NA NA 1+ FORMUL 19 HOH *174(H2 O) HELIX 1 1 LEU A 6 GLY A 19 1 14 HELIX 2 2 ASP A 42 GLY A 54 1 13 HELIX 3 3 ASP A 75 ILE A 83 1 9 HELIX 4 4 ILE A 83 TYR A 90 1 8 HELIX 5 5 LYS A 96 SER A 109 1 14 HELIX 6 6 SER A 129 ASN A 135 1 7 HELIX 7 7 TYR A 138 GLY A 151 1 14 HELIX 8 8 GLY A 176 LEU A 187 1 12 HELIX 9 9 GLY A 207 ALA A 221 1 15 HELIX 10 10 GLY A 227 ARG A 241 1 15 HELIX 11 11 ILE A 243 GLU A 248 1 6 HELIX 12 12 LEU B 6 ASP B 18 1 13 HELIX 13 13 ASP B 42 GLY B 54 1 13 HELIX 14 14 ASP B 75 PHE B 82 1 8 HELIX 15 15 ASN B 95 ASN B 110 1 16 HELIX 16 16 SER B 129 ASN B 135 1 7 HELIX 17 17 TYR B 138 GLY B 151 1 14 HELIX 18 18 GLY B 176 LEU B 187 1 12 HELIX 19 19 GLY B 207 ALA B 221 1 15 HELIX 20 20 ASN B 228 ARG B 241 1 14 HELIX 21 21 ILE B 243 GLU B 248 1 6 SHEET 1 A 4 TYR A 20 LYS A 26 0 SHEET 2 A 4 TYR A 29 SER A 39 -1 O GLU A 33 N SER A 22 SHEET 3 A 4 ILE A 66 ILE A 73 -1 O LEU A 71 N ILE A 36 SHEET 4 A 4 LYS A 57 ARG A 63 -1 N ARG A 61 O MET A 68 SHEET 1 B 4 CYS A 152 LYS A 157 0 SHEET 2 B 4 LEU A 165 LYS A 174 -1 O SER A 168 N SER A 154 SHEET 3 B 4 CYS A 200 VAL A 205 -1 O LEU A 203 N ILE A 171 SHEET 4 B 4 TYR A 194 LEU A 195 -1 N TYR A 194 O ARG A 202 SHEET 1 C 4 GLY B 19 LYS B 26 0 SHEET 2 C 4 TYR B 29 SER B 39 -1 O TYR B 29 N LYS B 26 SHEET 3 C 4 GLU B 67 ARG B 72 -1 O VAL B 69 N LEU B 38 SHEET 4 C 4 VAL B 58 LYS B 62 -1 N ARG B 61 O MET B 68 SHEET 1 D 4 PHE B 153 LYS B 157 0 SHEET 2 D 4 LEU B 165 LYS B 174 -1 O SER B 168 N SER B 154 SHEET 3 D 4 CYS B 200 THR B 206 -1 O VAL B 205 N PHE B 169 SHEET 4 D 4 TYR B 194 LEU B 195 -1 N TYR B 194 O ARG B 202 LINK O GLY A 17 CA CA A 302 1555 1555 2.24 LINK O GLY A 17 CA CA A 303 1555 1555 2.32 LINK OD1 ASP A 18 CA CA A 301 1555 1555 2.50 LINK OD2 ASP A 18 CA CA A 301 1555 1555 3.14 LINK OD2 ASP A 18 CA CA A 303 1555 1555 2.56 LINK O ALA A 149 CA CA A 301 1555 1555 2.34 LINK OE1 GLU A 150 CA CA A 302 1555 1555 2.85 LINK OE1 GLU A 150 CA CA A 303 1555 1555 2.16 LINK CA CA A 301 OP1 DT C 417 1555 1555 2.42 LINK CA CA A 301 OP2 DT C 417 1555 1555 2.79 LINK CA CA A 301 OP1 DA D 515 1555 1555 2.29 LINK CA CA A 302 O HOH A 415 1555 1555 2.70 LINK CA CA A 302 OP1 DC C 416 1555 1555 2.66 LINK CA CA A 302 OP2 DC D 516 1555 1555 2.55 LINK CA CA A 303 OP1 DC C 416 1555 1555 2.98 LINK CA CA A 303 OP2 DT C 417 1555 1555 2.71 LINK CA CA A 303 O3' DA D 515 1555 1555 3.12 LINK CA CA A 303 OP2 DC D 516 1555 1555 2.17 LINK OD1 ASP B 18 CA CA B 301 1555 1555 2.79 LINK OD2 ASP B 18 CA CA B 301 1555 1555 2.98 LINK OD2 ASP B 75 NA NA B 304 1555 1555 3.01 LINK OD1 ASN B 77 NA NA B 304 1555 1555 3.04 LINK O ALA B 149 CA CA B 301 1555 1555 3.16 LINK OE2 GLU B 150 CA CA E 501 1555 1555 3.05 LINK CA CA B 301 OP1 DT E 417 1555 1555 2.36 LINK CA CA B 301 OP2 DT E 417 1555 1555 3.10 LINK CA CA B 301 OP1 DA F 515 1555 1555 2.14 LINK O HOH B 417 CA CA E 501 1555 1555 3.19 LINK OP1 DG E 409 CA CA E 502 1555 1555 2.98 LINK O3' DT E 415 CA CA E 501 1555 1555 2.91 LINK OP2 DC E 416 CA CA E 501 1555 1555 2.67 LINK CA CA E 501 OP2 DC F 516 1555 1555 3.00 CISPEP 1 LEU A 158 ASN A 159 0 -7.67 SITE 1 AC1 5 ASP A 18 ALA A 149 HOH A 416 DT C 417 SITE 2 AC1 5 DA D 515 SITE 1 AC2 7 GLU A 16 GLY A 17 GLU A 150 CA A 303 SITE 2 AC2 7 HOH A 415 DC C 416 DC D 516 SITE 1 AC3 8 GLY A 17 ASP A 18 GLU A 150 CA A 302 SITE 2 AC3 8 DC C 416 DT C 417 DA D 515 DC D 516 SITE 1 AC4 5 ASP B 18 ALA B 149 DT E 417 DA F 514 SITE 2 AC4 5 DA F 515 SITE 1 AC5 4 LYS B 76 ASN B 77 LYS B 80 HOH B 441 SITE 1 AC6 2 ASP B 75 ASN B 77 SITE 1 AC7 4 GLU B 150 DT E 415 DC E 416 DC F 516 SITE 1 AC8 2 DG E 409 PEG E 503 SITE 1 AC9 3 DG E 409 CA E 502 HOH E 625 SITE 1 BC1 3 DC F 525 HOH F 719 HOH F 726 CRYST1 181.591 73.592 82.031 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005507 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012191 0.00000