data_3UVY # _entry.id 3UVY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UVY pdb_00003uvy 10.2210/pdb3uvy/pdb RCSB RCSB069276 ? ? WWPDB D_1000069276 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-18 2 'Structure model' 1 1 2012-04-11 3 'Structure model' 1 2 2023-09-13 4 'Structure model' 1 3 2023-12-06 5 'Structure model' 1 4 2024-11-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Data collection' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_entry_details 10 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_chem_comp_atom.atom_id' 6 4 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_database_status.entry_id 3UVY _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-11-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3UV2 . unspecified PDB 3UV4 . unspecified PDB 3UV5 . unspecified PDB 3UVD . unspecified PDB 3UVW . unspecified PDB 3UVX . unspecified PDB 3UW9 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Filippakopoulos, P.' 1 'Felletar, I.' 2 'Picaud, S.' 3 'Keates, T.' 4 'Muniz, J.' 5 'Gileadi, O.' 6 'von Delft, F.' 7 'Arrowsmith, C.H.' 8 'Edwards, A.M.' 9 'Weigelt, J.' 10 'Bountra, C.' 11 'Knapp, S.' 12 'Structural Genomics Consortium (SGC)' 13 # _citation.id primary _citation.title 'Histone recognition and large-scale structural analysis of the human bromodomain family.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 149 _citation.page_first 214 _citation.page_last 231 _citation.year 2012 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22464331 _citation.pdbx_database_id_DOI 10.1016/j.cell.2012.02.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippakopoulos, P.' 1 ? primary 'Picaud, S.' 2 ? primary 'Mangos, M.' 3 ? primary 'Keates, T.' 4 ? primary 'Lambert, J.P.' 5 ? primary 'Barsyte-Lovejoy, D.' 6 ? primary 'Felletar, I.' 7 ? primary 'Volkmer, R.' 8 ? primary 'Muller, S.' 9 ? primary 'Pawson, T.' 10 ? primary 'Gingras, A.C.' 11 ? primary 'Arrowsmith, C.H.' 12 ? primary 'Knapp, S.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 4' 15099.380 1 ? ? 'UNP RESIDUES 44-168' ? 2 polymer syn 'Histone H4' 1480.718 1 ? ? 'UNP RESIDUES 16-26' ? 3 water nat water 18.015 65 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Protein HUNK1' 2 'Peptide (H4K16acK20ac)' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; ;SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; A ? 2 'polypeptide(L)' no yes 'A(ALY)RHR(ALY)VLRDN' AKRHRKVLRDN B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ASN n 1 4 PRO n 1 5 PRO n 1 6 PRO n 1 7 PRO n 1 8 GLU n 1 9 THR n 1 10 SER n 1 11 ASN n 1 12 PRO n 1 13 ASN n 1 14 LYS n 1 15 PRO n 1 16 LYS n 1 17 ARG n 1 18 GLN n 1 19 THR n 1 20 ASN n 1 21 GLN n 1 22 LEU n 1 23 GLN n 1 24 TYR n 1 25 LEU n 1 26 LEU n 1 27 ARG n 1 28 VAL n 1 29 VAL n 1 30 LEU n 1 31 LYS n 1 32 THR n 1 33 LEU n 1 34 TRP n 1 35 LYS n 1 36 HIS n 1 37 GLN n 1 38 PHE n 1 39 ALA n 1 40 TRP n 1 41 PRO n 1 42 PHE n 1 43 GLN n 1 44 GLN n 1 45 PRO n 1 46 VAL n 1 47 ASP n 1 48 ALA n 1 49 VAL n 1 50 LYS n 1 51 LEU n 1 52 ASN n 1 53 LEU n 1 54 PRO n 1 55 ASP n 1 56 TYR n 1 57 TYR n 1 58 LYS n 1 59 ILE n 1 60 ILE n 1 61 LYS n 1 62 THR n 1 63 PRO n 1 64 MET n 1 65 ASP n 1 66 MET n 1 67 GLY n 1 68 THR n 1 69 ILE n 1 70 LYS n 1 71 LYS n 1 72 ARG n 1 73 LEU n 1 74 GLU n 1 75 ASN n 1 76 ASN n 1 77 TYR n 1 78 TYR n 1 79 TRP n 1 80 ASN n 1 81 ALA n 1 82 GLN n 1 83 GLU n 1 84 CYS n 1 85 ILE n 1 86 GLN n 1 87 ASP n 1 88 PHE n 1 89 ASN n 1 90 THR n 1 91 MET n 1 92 PHE n 1 93 THR n 1 94 ASN n 1 95 CYS n 1 96 TYR n 1 97 ILE n 1 98 TYR n 1 99 ASN n 1 100 LYS n 1 101 PRO n 1 102 GLY n 1 103 ASP n 1 104 ASP n 1 105 ILE n 1 106 VAL n 1 107 LEU n 1 108 MET n 1 109 ALA n 1 110 GLU n 1 111 ALA n 1 112 LEU n 1 113 GLU n 1 114 LYS n 1 115 LEU n 1 116 PHE n 1 117 LEU n 1 118 GLN n 1 119 LYS n 1 120 ILE n 1 121 ASN n 1 122 GLU n 1 123 LEU n 1 124 PRO n 1 125 THR n 1 126 GLU n 1 127 GLU n 2 1 ALA n 2 2 ALY n 2 3 ARG n 2 4 HIS n 2 5 ARG n 2 6 ALY n 2 7 VAL n 2 8 LEU n 2 9 ARG n 2 10 ASP n 2 11 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD4, HUNK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-R3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC28-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALY 'L-peptide linking' n 'N(6)-ACETYLLYSINE' ? 'C8 H16 N2 O3' 188.224 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 42 ? ? ? A . n A 1 2 MET 2 43 ? ? ? A . n A 1 3 ASN 3 44 ? ? ? A . n A 1 4 PRO 4 45 ? ? ? A . n A 1 5 PRO 5 46 ? ? ? A . n A 1 6 PRO 6 47 ? ? ? A . n A 1 7 PRO 7 48 ? ? ? A . n A 1 8 GLU 8 49 ? ? ? A . n A 1 9 THR 9 50 ? ? ? A . n A 1 10 SER 10 51 ? ? ? A . n A 1 11 ASN 11 52 ? ? ? A . n A 1 12 PRO 12 53 ? ? ? A . n A 1 13 ASN 13 54 ? ? ? A . n A 1 14 LYS 14 55 ? ? ? A . n A 1 15 PRO 15 56 ? ? ? A . n A 1 16 LYS 16 57 ? ? ? A . n A 1 17 ARG 17 58 ? ? ? A . n A 1 18 GLN 18 59 59 GLN GLN A . n A 1 19 THR 19 60 60 THR THR A . n A 1 20 ASN 20 61 61 ASN ASN A . n A 1 21 GLN 21 62 62 GLN GLN A . n A 1 22 LEU 22 63 63 LEU LEU A . n A 1 23 GLN 23 64 64 GLN GLN A . n A 1 24 TYR 24 65 65 TYR TYR A . n A 1 25 LEU 25 66 66 LEU LEU A . n A 1 26 LEU 26 67 67 LEU LEU A . n A 1 27 ARG 27 68 68 ARG ARG A . n A 1 28 VAL 28 69 69 VAL VAL A . n A 1 29 VAL 29 70 70 VAL VAL A . n A 1 30 LEU 30 71 71 LEU LEU A . n A 1 31 LYS 31 72 72 LYS LYS A . n A 1 32 THR 32 73 73 THR THR A . n A 1 33 LEU 33 74 74 LEU LEU A . n A 1 34 TRP 34 75 75 TRP TRP A . n A 1 35 LYS 35 76 76 LYS LYS A . n A 1 36 HIS 36 77 77 HIS HIS A . n A 1 37 GLN 37 78 78 GLN GLN A . n A 1 38 PHE 38 79 79 PHE PHE A . n A 1 39 ALA 39 80 80 ALA ALA A . n A 1 40 TRP 40 81 81 TRP TRP A . n A 1 41 PRO 41 82 82 PRO PRO A . n A 1 42 PHE 42 83 83 PHE PHE A . n A 1 43 GLN 43 84 84 GLN GLN A . n A 1 44 GLN 44 85 85 GLN GLN A . n A 1 45 PRO 45 86 86 PRO PRO A . n A 1 46 VAL 46 87 87 VAL VAL A . n A 1 47 ASP 47 88 88 ASP ASP A . n A 1 48 ALA 48 89 89 ALA ALA A . n A 1 49 VAL 49 90 90 VAL VAL A . n A 1 50 LYS 50 91 91 LYS LYS A . n A 1 51 LEU 51 92 92 LEU LEU A . n A 1 52 ASN 52 93 93 ASN ASN A . n A 1 53 LEU 53 94 94 LEU LEU A . n A 1 54 PRO 54 95 95 PRO PRO A . n A 1 55 ASP 55 96 96 ASP ASP A . n A 1 56 TYR 56 97 97 TYR TYR A . n A 1 57 TYR 57 98 98 TYR TYR A . n A 1 58 LYS 58 99 99 LYS LYS A . n A 1 59 ILE 59 100 100 ILE ILE A . n A 1 60 ILE 60 101 101 ILE ILE A . n A 1 61 LYS 61 102 102 LYS LYS A . n A 1 62 THR 62 103 103 THR THR A . n A 1 63 PRO 63 104 104 PRO PRO A . n A 1 64 MET 64 105 105 MET MET A . n A 1 65 ASP 65 106 106 ASP ASP A . n A 1 66 MET 66 107 107 MET MET A . n A 1 67 GLY 67 108 108 GLY GLY A . n A 1 68 THR 68 109 109 THR THR A . n A 1 69 ILE 69 110 110 ILE ILE A . n A 1 70 LYS 70 111 111 LYS LYS A . n A 1 71 LYS 71 112 112 LYS LYS A . n A 1 72 ARG 72 113 113 ARG ARG A . n A 1 73 LEU 73 114 114 LEU LEU A . n A 1 74 GLU 74 115 115 GLU GLU A . n A 1 75 ASN 75 116 116 ASN ASN A . n A 1 76 ASN 76 117 117 ASN ASN A . n A 1 77 TYR 77 118 118 TYR TYR A . n A 1 78 TYR 78 119 119 TYR TYR A . n A 1 79 TRP 79 120 120 TRP TRP A . n A 1 80 ASN 80 121 121 ASN ASN A . n A 1 81 ALA 81 122 122 ALA ALA A . n A 1 82 GLN 82 123 123 GLN GLN A . n A 1 83 GLU 83 124 124 GLU GLU A . n A 1 84 CYS 84 125 125 CYS CYS A . n A 1 85 ILE 85 126 126 ILE ILE A . n A 1 86 GLN 86 127 127 GLN GLN A . n A 1 87 ASP 87 128 128 ASP ASP A . n A 1 88 PHE 88 129 129 PHE PHE A . n A 1 89 ASN 89 130 130 ASN ASN A . n A 1 90 THR 90 131 131 THR THR A . n A 1 91 MET 91 132 132 MET MET A . n A 1 92 PHE 92 133 133 PHE PHE A . n A 1 93 THR 93 134 134 THR THR A . n A 1 94 ASN 94 135 135 ASN ASN A . n A 1 95 CYS 95 136 136 CYS CYS A . n A 1 96 TYR 96 137 137 TYR TYR A . n A 1 97 ILE 97 138 138 ILE ILE A . n A 1 98 TYR 98 139 139 TYR TYR A . n A 1 99 ASN 99 140 140 ASN ASN A . n A 1 100 LYS 100 141 141 LYS LYS A . n A 1 101 PRO 101 142 142 PRO PRO A . n A 1 102 GLY 102 143 143 GLY GLY A . n A 1 103 ASP 103 144 144 ASP ASP A . n A 1 104 ASP 104 145 145 ASP ASP A . n A 1 105 ILE 105 146 146 ILE ILE A . n A 1 106 VAL 106 147 147 VAL VAL A . n A 1 107 LEU 107 148 148 LEU LEU A . n A 1 108 MET 108 149 149 MET MET A . n A 1 109 ALA 109 150 150 ALA ALA A . n A 1 110 GLU 110 151 151 GLU GLU A . n A 1 111 ALA 111 152 152 ALA ALA A . n A 1 112 LEU 112 153 153 LEU LEU A . n A 1 113 GLU 113 154 154 GLU GLU A . n A 1 114 LYS 114 155 155 LYS LYS A . n A 1 115 LEU 115 156 156 LEU LEU A . n A 1 116 PHE 116 157 157 PHE PHE A . n A 1 117 LEU 117 158 158 LEU LEU A . n A 1 118 GLN 118 159 159 GLN GLN A . n A 1 119 LYS 119 160 160 LYS LYS A . n A 1 120 ILE 120 161 161 ILE ILE A . n A 1 121 ASN 121 162 162 ASN ASN A . n A 1 122 GLU 122 163 163 GLU GLU A . n A 1 123 LEU 123 164 164 LEU LEU A . n A 1 124 PRO 124 165 165 PRO PRO A . n A 1 125 THR 125 166 166 THR THR A . n A 1 126 GLU 126 167 167 GLU GLU A . n A 1 127 GLU 127 168 ? ? ? A . n B 2 1 ALA 1 15 15 ALA ALA B . n B 2 2 ALY 2 16 16 ALY ALY B . n B 2 3 ARG 3 17 17 ARG ARG B . n B 2 4 HIS 4 18 18 HIS HIS B . n B 2 5 ARG 5 19 19 ARG ARG B . n B 2 6 ALY 6 20 20 ALY ALY B . n B 2 7 VAL 7 21 21 VAL VAL B . n B 2 8 LEU 8 22 22 LEU LEU B . n B 2 9 ARG 9 23 23 ARG ARG B . n B 2 10 ASP 10 24 24 ASP ASP B . n B 2 11 ASN 11 25 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 18 18 HOH HOH A . C 3 HOH 8 19 19 HOH HOH A . C 3 HOH 9 20 20 HOH HOH A . C 3 HOH 10 21 21 HOH HOH A . C 3 HOH 11 26 26 HOH HOH A . C 3 HOH 12 28 28 HOH HOH A . C 3 HOH 13 30 30 HOH HOH A . C 3 HOH 14 31 31 HOH HOH A . C 3 HOH 15 32 32 HOH HOH A . C 3 HOH 16 37 37 HOH HOH A . C 3 HOH 17 39 39 HOH HOH A . C 3 HOH 18 40 40 HOH HOH A . C 3 HOH 19 41 41 HOH HOH A . C 3 HOH 20 169 42 HOH HOH A . C 3 HOH 21 170 46 HOH HOH A . C 3 HOH 22 171 47 HOH HOH A . C 3 HOH 23 172 48 HOH HOH A . C 3 HOH 24 173 49 HOH HOH A . C 3 HOH 25 174 50 HOH HOH A . C 3 HOH 26 175 51 HOH HOH A . C 3 HOH 27 176 52 HOH HOH A . C 3 HOH 28 177 53 HOH HOH A . C 3 HOH 29 178 55 HOH HOH A . C 3 HOH 30 179 56 HOH HOH A . C 3 HOH 31 180 57 HOH HOH A . C 3 HOH 32 181 58 HOH HOH A . C 3 HOH 33 182 59 HOH HOH A . C 3 HOH 34 183 60 HOH HOH A . C 3 HOH 35 184 61 HOH HOH A . C 3 HOH 36 185 62 HOH HOH A . C 3 HOH 37 186 63 HOH HOH A . C 3 HOH 38 187 66 HOH HOH A . C 3 HOH 39 188 67 HOH HOH A . C 3 HOH 40 189 68 HOH HOH A . C 3 HOH 41 190 69 HOH HOH A . C 3 HOH 42 191 70 HOH HOH A . C 3 HOH 43 192 71 HOH HOH A . C 3 HOH 44 193 72 HOH HOH A . C 3 HOH 45 194 73 HOH HOH A . C 3 HOH 46 195 74 HOH HOH A . C 3 HOH 47 196 75 HOH HOH A . C 3 HOH 48 197 76 HOH HOH A . C 3 HOH 49 198 77 HOH HOH A . C 3 HOH 50 199 78 HOH HOH A . C 3 HOH 51 200 54 HOH HOH A . D 3 HOH 1 4 4 HOH HOH B . D 3 HOH 2 26 22 HOH HOH B . D 3 HOH 3 43 43 HOH HOH B . D 3 HOH 4 44 44 HOH HOH B . D 3 HOH 5 45 45 HOH HOH B . D 3 HOH 6 64 64 HOH HOH B . D 3 HOH 7 65 65 HOH HOH B . D 3 HOH 8 79 79 HOH HOH B . D 3 HOH 9 80 80 HOH HOH B . D 3 HOH 10 81 81 HOH HOH B . D 3 HOH 11 82 82 HOH HOH B . D 3 HOH 12 83 83 HOH HOH B . D 3 HOH 13 84 84 HOH HOH B . D 3 HOH 14 85 85 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 59 ? CG ? A GLN 18 CG 2 1 Y 1 A GLN 59 ? CD ? A GLN 18 CD 3 1 Y 1 A GLN 59 ? OE1 ? A GLN 18 OE1 4 1 Y 1 A GLN 59 ? NE2 ? A GLN 18 NE2 5 1 Y 1 A LYS 72 ? CE ? A LYS 31 CE 6 1 Y 1 A LYS 72 ? NZ ? A LYS 31 NZ 7 1 Y 1 A LYS 76 ? CD ? A LYS 35 CD 8 1 Y 1 A LYS 76 ? CE ? A LYS 35 CE 9 1 Y 1 A LYS 76 ? NZ ? A LYS 35 NZ 10 1 Y 1 A GLN 123 ? CD ? A GLN 82 CD 11 1 Y 1 A GLN 123 ? OE1 ? A GLN 82 OE1 12 1 Y 1 A GLN 123 ? NE2 ? A GLN 82 NE2 13 1 Y 1 B LEU 22 ? CG ? B LEU 8 CG 14 1 Y 1 B LEU 22 ? CD1 ? B LEU 8 CD1 15 1 Y 1 B LEU 22 ? CD2 ? B LEU 8 CD2 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 PHASER 2.1.4 'Wed Jun 24 14:00:05 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 GDA . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # _cell.length_a 43.225 _cell.length_b 50.478 _cell.length_c 51.969 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3UVY _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3UVY _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3UVY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_meas 28.06 _exptl_crystal.density_percent_sol 28.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2M NaI, 0.1M BTProp, 20% PEG 3350, 10% EtGly, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 278K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-01-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 # _reflns.entry_id 3UVY _reflns.d_resolution_high 2.020 _reflns.d_resolution_low 43.225 _reflns.number_all 7890 _reflns.number_obs 7866 _reflns.pdbx_netI_over_sigmaI 8.600 _reflns.pdbx_Rsym_value 0.135 _reflns.pdbx_redundancy 4.200 _reflns.percent_possible_obs 99.700 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs 0.135 _reflns.B_iso_Wilson_estimate 22.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.020 2.130 ? 4871 ? 0.831 0.900 0.831 ? 4.400 ? 1118 100.000 1 1 2.130 2.260 ? 4636 ? 0.475 1.600 0.475 ? 4.400 ? 1064 99.900 2 1 2.260 2.410 ? 4378 ? 0.376 2.100 0.376 ? 4.300 ? 1011 99.900 3 1 2.410 2.610 ? 4014 ? 0.269 2.800 0.269 ? 4.300 ? 929 99.900 4 1 2.610 2.860 ? 3718 ? 0.187 4.100 0.187 ? 4.300 ? 863 100.000 5 1 2.860 3.190 ? 3380 ? 0.131 5.800 0.131 ? 4.300 ? 794 99.700 6 1 3.190 3.690 ? 2953 ? 0.079 9.500 0.079 ? 4.200 ? 708 99.700 7 1 3.690 4.520 ? 2444 ? 0.058 12.100 0.058 ? 4.000 ? 606 99.400 8 1 4.520 6.390 ? 1872 ? 0.055 11.800 0.055 ? 3.900 ? 481 99.600 9 1 6.390 43.225 ? 1030 ? 0.042 14.200 0.042 ? 3.500 ? 292 96.200 10 1 # _refine.entry_id 3UVY _refine.ls_d_res_high 2.0200 _refine.ls_d_res_low 43.22 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6300 _refine.ls_number_reflns_obs 7828 _refine.ls_number_reflns_all 7857 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: WITH TLS ADDED ; _refine.ls_R_factor_all 0.1856 _refine.ls_R_factor_obs 0.1856 _refine.ls_R_factor_R_work 0.1811 _refine.ls_wR_factor_R_work 0.1635 _refine.ls_R_factor_R_free 0.2582 _refine.ls_wR_factor_R_free 0.2356 _refine.ls_percent_reflns_R_free 5.9000 _refine.ls_number_reflns_R_free 459 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.0894 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.1600 _refine.aniso_B[2][2] -1.9200 _refine.aniso_B[3][3] -0.2400 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9580 _refine.correlation_coeff_Fo_to_Fc_free 0.9140 _refine.overall_SU_R_Cruickshank_DPI 0.2215 _refine.overall_SU_R_free 0.2036 _refine.pdbx_overall_ESU_R 0.2210 _refine.pdbx_overall_ESU_R_Free 0.2040 _refine.overall_SU_ML 0.1720 _refine.overall_SU_B 11.7260 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'Ensemble of 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, 3D7C' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7834 _refine.B_iso_max 91.140 _refine.B_iso_min 2.000 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 1066 _refine_hist.d_res_high 2.0200 _refine_hist.d_res_low 43.22 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1037 0.016 0.022 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 711 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1396 1.525 1.967 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1734 1.009 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 117 5.585 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 53 33.371 24.906 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 179 14.719 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 5 6.687 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 152 0.081 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1113 0.007 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 207 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 603 4.034 3.000 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 242 1.264 3.000 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 970 5.857 5.000 ? ? 'X-RAY DIFFRACTION' r_scbond_it 434 9.150 8.000 ? ? 'X-RAY DIFFRACTION' r_scangle_it 424 11.273 11.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.0200 _refine_ls_shell.d_res_low 2.0720 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.8200 _refine_ls_shell.number_reflns_R_work 544 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.3540 _refine_ls_shell.R_factor_R_free 0.4030 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 566 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UVY _struct.title 'Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H4K16acK20ac)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UVY _struct_keywords.pdbx_keywords 'TRANSCRIPTION/PROTEIN BINDING' _struct_keywords.text ;Bromodomain, Bromodomain containing protein 4, CAP, HUNK1, MCAP, Mitotic chromosome associated protein, peptide complex, Structural Genomics Consortium, SGC, TRANSCRIPTION, TRANSCRIPTION-PROTEIN BINDING complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP BRD4_HUMAN O60885 1 ;NPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQ ECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; 44 ? 2 UNP H4_HUMAN P62805 2 AKRHRKVLRDN 16 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UVY A 3 ? 127 ? O60885 44 ? 168 ? 44 168 2 2 3UVY B 1 ? 11 ? P62805 16 ? 26 ? 15 25 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UVY SER A 1 ? UNP O60885 ? ? 'expression tag' 42 1 1 3UVY MET A 2 ? UNP O60885 ? ? 'expression tag' 43 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1290 ? 1 MORE -8 ? 1 'SSA (A^2)' 7260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 18 ? VAL A 28 ? GLN A 59 VAL A 69 1 ? 11 HELX_P HELX_P2 2 VAL A 28 ? LYS A 35 ? VAL A 69 LYS A 76 1 ? 8 HELX_P HELX_P3 3 ALA A 39 ? GLN A 43 ? ALA A 80 GLN A 84 5 ? 5 HELX_P HELX_P4 4 ASP A 55 ? ILE A 60 ? ASP A 96 ILE A 101 1 ? 6 HELX_P HELX_P5 5 ASP A 65 ? ASN A 75 ? ASP A 106 ASN A 116 1 ? 11 HELX_P HELX_P6 6 ASN A 80 ? ASN A 99 ? ASN A 121 ASN A 140 1 ? 20 HELX_P HELX_P7 7 ASP A 103 ? GLU A 122 ? ASP A 144 GLU A 163 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B ALA 1 C ? ? ? 1_555 B ALY 2 N ? ? B ALA 15 B ALY 16 1_555 ? ? ? ? ? ? ? 1.309 ? ? covale2 covale both ? B ALY 2 C ? ? ? 1_555 B ARG 3 N ? ? B ALY 16 B ARG 17 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale3 covale both ? B ARG 5 C ? ? ? 1_555 B ALY 6 N ? ? B ARG 19 B ALY 20 1_555 ? ? ? ? ? ? ? 1.269 ? ? covale4 covale both ? B ALY 6 C ? ? ? 1_555 B VAL 7 N ? ? B ALY 20 B VAL 21 1_555 ? ? ? ? ? ? ? 1.319 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ALY B 2 ? . . . . ALY B 16 ? 1_555 . . . . . . . LYS 1 ALY Acetylation 'Named protein modification' 2 ALY B 6 ? . . . . ALY B 20 ? 1_555 . . . . . . . LYS 1 ALY Acetylation 'Named protein modification' # _pdbx_entry_details.entry_id 3UVY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 32 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.98 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA B ALA 15 ? ? C B ALA 15 ? ? N B ALY 16 ? ? 139.64 117.20 22.44 2.20 Y 2 1 O B ALA 15 ? ? C B ALA 15 ? ? N B ALY 16 ? ? 106.53 122.70 -16.17 1.60 Y 3 1 O B ALY 16 ? ? C B ALY 16 ? ? N B ARG 17 ? ? 109.94 122.70 -12.76 1.60 Y 4 1 C B ALY 16 ? ? N B ARG 17 ? ? CA B ARG 17 ? ? 139.39 121.70 17.69 2.50 Y 5 1 O B ALY 20 ? ? C B ALY 20 ? ? N B VAL 21 ? ? 100.88 122.70 -21.82 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 69 ? ? -109.56 -60.11 2 1 LEU A 94 ? ? -118.57 74.53 3 1 ALY B 16 ? ? -104.04 72.60 4 1 ALY B 20 ? ? -140.89 -54.14 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ALA B 15 ? ? -16.46 2 1 ALY B 16 ? ? 25.01 3 1 ALY B 20 ? ? 33.63 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B ALY 2 B ALY 16 ? LYS 'N(6)-ACETYLLYSINE' 2 B ALY 6 B ALY 20 ? LYS 'N(6)-ACETYLLYSINE' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.020 _diffrn_reflns.pdbx_d_res_low 43.225 _diffrn_reflns.pdbx_number_obs 7866 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.135 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 5.40 _diffrn_reflns.pdbx_redundancy 4.20 _diffrn_reflns.pdbx_percent_possible_obs 99.70 _diffrn_reflns.number 33296 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 6.39 43.22 ? ? 0.042 0.042 ? 3.50 96.20 1 4.52 6.39 ? ? 0.055 0.055 ? 3.90 99.60 1 3.69 4.52 ? ? 0.058 0.058 ? 4.00 99.40 1 3.19 3.69 ? ? 0.079 0.079 ? 4.20 99.70 1 2.86 3.19 ? ? 0.131 0.131 ? 4.30 99.70 1 2.61 2.86 ? ? 0.187 0.187 ? 4.30 100.00 1 2.41 2.61 ? ? 0.269 0.269 ? 4.30 99.90 1 2.26 2.41 ? ? 0.376 0.376 ? 4.30 99.90 1 2.13 2.26 ? ? 0.475 0.475 ? 4.40 99.90 1 2.02 2.13 ? ? 0.831 0.831 ? 4.40 100.00 # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 59.6893 _pdbx_refine_tls.origin_y 22.9907 _pdbx_refine_tls.origin_z 10.0539 _pdbx_refine_tls.T[1][1] 0.1183 _pdbx_refine_tls.T[2][2] 0.0186 _pdbx_refine_tls.T[3][3] 0.0181 _pdbx_refine_tls.T[1][2] -0.0090 _pdbx_refine_tls.T[1][3] 0.0035 _pdbx_refine_tls.T[2][3] 0.0047 _pdbx_refine_tls.L[1][1] 1.0619 _pdbx_refine_tls.L[2][2] 0.4740 _pdbx_refine_tls.L[3][3] 0.4984 _pdbx_refine_tls.L[1][2] 0.3348 _pdbx_refine_tls.L[1][3] 0.6206 _pdbx_refine_tls.L[2][3] 0.2398 _pdbx_refine_tls.S[1][1] -0.0082 _pdbx_refine_tls.S[2][2] -0.0009 _pdbx_refine_tls.S[3][3] 0.0091 _pdbx_refine_tls.S[1][2] -0.0163 _pdbx_refine_tls.S[1][3] -0.0347 _pdbx_refine_tls.S[2][3] -0.0532 _pdbx_refine_tls.S[2][1] -0.0671 _pdbx_refine_tls.S[3][1] -0.0032 _pdbx_refine_tls.S[3][2] -0.0483 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 59 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 167 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MR.entry_id 3UVY _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 53.550 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 25.980 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 25.980 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 42 ? A SER 1 2 1 Y 1 A MET 43 ? A MET 2 3 1 Y 1 A ASN 44 ? A ASN 3 4 1 Y 1 A PRO 45 ? A PRO 4 5 1 Y 1 A PRO 46 ? A PRO 5 6 1 Y 1 A PRO 47 ? A PRO 6 7 1 Y 1 A PRO 48 ? A PRO 7 8 1 Y 1 A GLU 49 ? A GLU 8 9 1 Y 1 A THR 50 ? A THR 9 10 1 Y 1 A SER 51 ? A SER 10 11 1 Y 1 A ASN 52 ? A ASN 11 12 1 Y 1 A PRO 53 ? A PRO 12 13 1 Y 1 A ASN 54 ? A ASN 13 14 1 Y 1 A LYS 55 ? A LYS 14 15 1 Y 1 A PRO 56 ? A PRO 15 16 1 Y 1 A LYS 57 ? A LYS 16 17 1 Y 1 A ARG 58 ? A ARG 17 18 1 Y 1 A GLU 168 ? A GLU 127 19 1 Y 1 B ASN 25 ? B ASN 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ALY OH O N N 14 ALY CH C N N 15 ALY CH3 C N N 16 ALY NZ N N N 17 ALY CE C N N 18 ALY CD C N N 19 ALY CG C N N 20 ALY CB C N N 21 ALY CA C N S 22 ALY N N N N 23 ALY C C N N 24 ALY O O N N 25 ALY OXT O N N 26 ALY HH31 H N N 27 ALY HH32 H N N 28 ALY HH33 H N N 29 ALY HZ H N N 30 ALY HE3 H N N 31 ALY HE2 H N N 32 ALY HD3 H N N 33 ALY HD2 H N N 34 ALY HG3 H N N 35 ALY HG2 H N N 36 ALY HB3 H N N 37 ALY HB2 H N N 38 ALY HA H N N 39 ALY H H N N 40 ALY H2 H N N 41 ALY HXT H N N 42 ARG N N N N 43 ARG CA C N S 44 ARG C C N N 45 ARG O O N N 46 ARG CB C N N 47 ARG CG C N N 48 ARG CD C N N 49 ARG NE N N N 50 ARG CZ C N N 51 ARG NH1 N N N 52 ARG NH2 N N N 53 ARG OXT O N N 54 ARG H H N N 55 ARG H2 H N N 56 ARG HA H N N 57 ARG HB2 H N N 58 ARG HB3 H N N 59 ARG HG2 H N N 60 ARG HG3 H N N 61 ARG HD2 H N N 62 ARG HD3 H N N 63 ARG HE H N N 64 ARG HH11 H N N 65 ARG HH12 H N N 66 ARG HH21 H N N 67 ARG HH22 H N N 68 ARG HXT H N N 69 ASN N N N N 70 ASN CA C N S 71 ASN C C N N 72 ASN O O N N 73 ASN CB C N N 74 ASN CG C N N 75 ASN OD1 O N N 76 ASN ND2 N N N 77 ASN OXT O N N 78 ASN H H N N 79 ASN H2 H N N 80 ASN HA H N N 81 ASN HB2 H N N 82 ASN HB3 H N N 83 ASN HD21 H N N 84 ASN HD22 H N N 85 ASN HXT H N N 86 ASP N N N N 87 ASP CA C N S 88 ASP C C N N 89 ASP O O N N 90 ASP CB C N N 91 ASP CG C N N 92 ASP OD1 O N N 93 ASP OD2 O N N 94 ASP OXT O N N 95 ASP H H N N 96 ASP H2 H N N 97 ASP HA H N N 98 ASP HB2 H N N 99 ASP HB3 H N N 100 ASP HD2 H N N 101 ASP HXT H N N 102 CYS N N N N 103 CYS CA C N R 104 CYS C C N N 105 CYS O O N N 106 CYS CB C N N 107 CYS SG S N N 108 CYS OXT O N N 109 CYS H H N N 110 CYS H2 H N N 111 CYS HA H N N 112 CYS HB2 H N N 113 CYS HB3 H N N 114 CYS HG H N N 115 CYS HXT H N N 116 GLN N N N N 117 GLN CA C N S 118 GLN C C N N 119 GLN O O N N 120 GLN CB C N N 121 GLN CG C N N 122 GLN CD C N N 123 GLN OE1 O N N 124 GLN NE2 N N N 125 GLN OXT O N N 126 GLN H H N N 127 GLN H2 H N N 128 GLN HA H N N 129 GLN HB2 H N N 130 GLN HB3 H N N 131 GLN HG2 H N N 132 GLN HG3 H N N 133 GLN HE21 H N N 134 GLN HE22 H N N 135 GLN HXT H N N 136 GLU N N N N 137 GLU CA C N S 138 GLU C C N N 139 GLU O O N N 140 GLU CB C N N 141 GLU CG C N N 142 GLU CD C N N 143 GLU OE1 O N N 144 GLU OE2 O N N 145 GLU OXT O N N 146 GLU H H N N 147 GLU H2 H N N 148 GLU HA H N N 149 GLU HB2 H N N 150 GLU HB3 H N N 151 GLU HG2 H N N 152 GLU HG3 H N N 153 GLU HE2 H N N 154 GLU HXT H N N 155 GLY N N N N 156 GLY CA C N N 157 GLY C C N N 158 GLY O O N N 159 GLY OXT O N N 160 GLY H H N N 161 GLY H2 H N N 162 GLY HA2 H N N 163 GLY HA3 H N N 164 GLY HXT H N N 165 HIS N N N N 166 HIS CA C N S 167 HIS C C N N 168 HIS O O N N 169 HIS CB C N N 170 HIS CG C Y N 171 HIS ND1 N Y N 172 HIS CD2 C Y N 173 HIS CE1 C Y N 174 HIS NE2 N Y N 175 HIS OXT O N N 176 HIS H H N N 177 HIS H2 H N N 178 HIS HA H N N 179 HIS HB2 H N N 180 HIS HB3 H N N 181 HIS HD1 H N N 182 HIS HD2 H N N 183 HIS HE1 H N N 184 HIS HE2 H N N 185 HIS HXT H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 ILE N N N N 190 ILE CA C N S 191 ILE C C N N 192 ILE O O N N 193 ILE CB C N S 194 ILE CG1 C N N 195 ILE CG2 C N N 196 ILE CD1 C N N 197 ILE OXT O N N 198 ILE H H N N 199 ILE H2 H N N 200 ILE HA H N N 201 ILE HB H N N 202 ILE HG12 H N N 203 ILE HG13 H N N 204 ILE HG21 H N N 205 ILE HG22 H N N 206 ILE HG23 H N N 207 ILE HD11 H N N 208 ILE HD12 H N N 209 ILE HD13 H N N 210 ILE HXT H N N 211 LEU N N N N 212 LEU CA C N S 213 LEU C C N N 214 LEU O O N N 215 LEU CB C N N 216 LEU CG C N N 217 LEU CD1 C N N 218 LEU CD2 C N N 219 LEU OXT O N N 220 LEU H H N N 221 LEU H2 H N N 222 LEU HA H N N 223 LEU HB2 H N N 224 LEU HB3 H N N 225 LEU HG H N N 226 LEU HD11 H N N 227 LEU HD12 H N N 228 LEU HD13 H N N 229 LEU HD21 H N N 230 LEU HD22 H N N 231 LEU HD23 H N N 232 LEU HXT H N N 233 LYS N N N N 234 LYS CA C N S 235 LYS C C N N 236 LYS O O N N 237 LYS CB C N N 238 LYS CG C N N 239 LYS CD C N N 240 LYS CE C N N 241 LYS NZ N N N 242 LYS OXT O N N 243 LYS H H N N 244 LYS H2 H N N 245 LYS HA H N N 246 LYS HB2 H N N 247 LYS HB3 H N N 248 LYS HG2 H N N 249 LYS HG3 H N N 250 LYS HD2 H N N 251 LYS HD3 H N N 252 LYS HE2 H N N 253 LYS HE3 H N N 254 LYS HZ1 H N N 255 LYS HZ2 H N N 256 LYS HZ3 H N N 257 LYS HXT H N N 258 MET N N N N 259 MET CA C N S 260 MET C C N N 261 MET O O N N 262 MET CB C N N 263 MET CG C N N 264 MET SD S N N 265 MET CE C N N 266 MET OXT O N N 267 MET H H N N 268 MET H2 H N N 269 MET HA H N N 270 MET HB2 H N N 271 MET HB3 H N N 272 MET HG2 H N N 273 MET HG3 H N N 274 MET HE1 H N N 275 MET HE2 H N N 276 MET HE3 H N N 277 MET HXT H N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PRO N N N N 302 PRO CA C N S 303 PRO C C N N 304 PRO O O N N 305 PRO CB C N N 306 PRO CG C N N 307 PRO CD C N N 308 PRO OXT O N N 309 PRO H H N N 310 PRO HA H N N 311 PRO HB2 H N N 312 PRO HB3 H N N 313 PRO HG2 H N N 314 PRO HG3 H N N 315 PRO HD2 H N N 316 PRO HD3 H N N 317 PRO HXT H N N 318 SER N N N N 319 SER CA C N S 320 SER C C N N 321 SER O O N N 322 SER CB C N N 323 SER OG O N N 324 SER OXT O N N 325 SER H H N N 326 SER H2 H N N 327 SER HA H N N 328 SER HB2 H N N 329 SER HB3 H N N 330 SER HG H N N 331 SER HXT H N N 332 THR N N N N 333 THR CA C N S 334 THR C C N N 335 THR O O N N 336 THR CB C N R 337 THR OG1 O N N 338 THR CG2 C N N 339 THR OXT O N N 340 THR H H N N 341 THR H2 H N N 342 THR HA H N N 343 THR HB H N N 344 THR HG1 H N N 345 THR HG21 H N N 346 THR HG22 H N N 347 THR HG23 H N N 348 THR HXT H N N 349 TRP N N N N 350 TRP CA C N S 351 TRP C C N N 352 TRP O O N N 353 TRP CB C N N 354 TRP CG C Y N 355 TRP CD1 C Y N 356 TRP CD2 C Y N 357 TRP NE1 N Y N 358 TRP CE2 C Y N 359 TRP CE3 C Y N 360 TRP CZ2 C Y N 361 TRP CZ3 C Y N 362 TRP CH2 C Y N 363 TRP OXT O N N 364 TRP H H N N 365 TRP H2 H N N 366 TRP HA H N N 367 TRP HB2 H N N 368 TRP HB3 H N N 369 TRP HD1 H N N 370 TRP HE1 H N N 371 TRP HE3 H N N 372 TRP HZ2 H N N 373 TRP HZ3 H N N 374 TRP HH2 H N N 375 TRP HXT H N N 376 TYR N N N N 377 TYR CA C N S 378 TYR C C N N 379 TYR O O N N 380 TYR CB C N N 381 TYR CG C Y N 382 TYR CD1 C Y N 383 TYR CD2 C Y N 384 TYR CE1 C Y N 385 TYR CE2 C Y N 386 TYR CZ C Y N 387 TYR OH O N N 388 TYR OXT O N N 389 TYR H H N N 390 TYR H2 H N N 391 TYR HA H N N 392 TYR HB2 H N N 393 TYR HB3 H N N 394 TYR HD1 H N N 395 TYR HD2 H N N 396 TYR HE1 H N N 397 TYR HE2 H N N 398 TYR HH H N N 399 TYR HXT H N N 400 VAL N N N N 401 VAL CA C N S 402 VAL C C N N 403 VAL O O N N 404 VAL CB C N N 405 VAL CG1 C N N 406 VAL CG2 C N N 407 VAL OXT O N N 408 VAL H H N N 409 VAL H2 H N N 410 VAL HA H N N 411 VAL HB H N N 412 VAL HG11 H N N 413 VAL HG12 H N N 414 VAL HG13 H N N 415 VAL HG21 H N N 416 VAL HG22 H N N 417 VAL HG23 H N N 418 VAL HXT H N N 419 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ALY OH CH doub N N 13 ALY CH CH3 sing N N 14 ALY CH NZ sing N N 15 ALY CH3 HH31 sing N N 16 ALY CH3 HH32 sing N N 17 ALY CH3 HH33 sing N N 18 ALY NZ CE sing N N 19 ALY NZ HZ sing N N 20 ALY CE CD sing N N 21 ALY CE HE3 sing N N 22 ALY CE HE2 sing N N 23 ALY CD CG sing N N 24 ALY CD HD3 sing N N 25 ALY CD HD2 sing N N 26 ALY CG CB sing N N 27 ALY CG HG3 sing N N 28 ALY CG HG2 sing N N 29 ALY CB CA sing N N 30 ALY CB HB3 sing N N 31 ALY CB HB2 sing N N 32 ALY CA N sing N N 33 ALY CA C sing N N 34 ALY CA HA sing N N 35 ALY N H sing N N 36 ALY N H2 sing N N 37 ALY C O doub N N 38 ALY C OXT sing N N 39 ALY OXT HXT sing N N 40 ARG N CA sing N N 41 ARG N H sing N N 42 ARG N H2 sing N N 43 ARG CA C sing N N 44 ARG CA CB sing N N 45 ARG CA HA sing N N 46 ARG C O doub N N 47 ARG C OXT sing N N 48 ARG CB CG sing N N 49 ARG CB HB2 sing N N 50 ARG CB HB3 sing N N 51 ARG CG CD sing N N 52 ARG CG HG2 sing N N 53 ARG CG HG3 sing N N 54 ARG CD NE sing N N 55 ARG CD HD2 sing N N 56 ARG CD HD3 sing N N 57 ARG NE CZ sing N N 58 ARG NE HE sing N N 59 ARG CZ NH1 sing N N 60 ARG CZ NH2 doub N N 61 ARG NH1 HH11 sing N N 62 ARG NH1 HH12 sing N N 63 ARG NH2 HH21 sing N N 64 ARG NH2 HH22 sing N N 65 ARG OXT HXT sing N N 66 ASN N CA sing N N 67 ASN N H sing N N 68 ASN N H2 sing N N 69 ASN CA C sing N N 70 ASN CA CB sing N N 71 ASN CA HA sing N N 72 ASN C O doub N N 73 ASN C OXT sing N N 74 ASN CB CG sing N N 75 ASN CB HB2 sing N N 76 ASN CB HB3 sing N N 77 ASN CG OD1 doub N N 78 ASN CG ND2 sing N N 79 ASN ND2 HD21 sing N N 80 ASN ND2 HD22 sing N N 81 ASN OXT HXT sing N N 82 ASP N CA sing N N 83 ASP N H sing N N 84 ASP N H2 sing N N 85 ASP CA C sing N N 86 ASP CA CB sing N N 87 ASP CA HA sing N N 88 ASP C O doub N N 89 ASP C OXT sing N N 90 ASP CB CG sing N N 91 ASP CB HB2 sing N N 92 ASP CB HB3 sing N N 93 ASP CG OD1 doub N N 94 ASP CG OD2 sing N N 95 ASP OD2 HD2 sing N N 96 ASP OXT HXT sing N N 97 CYS N CA sing N N 98 CYS N H sing N N 99 CYS N H2 sing N N 100 CYS CA C sing N N 101 CYS CA CB sing N N 102 CYS CA HA sing N N 103 CYS C O doub N N 104 CYS C OXT sing N N 105 CYS CB SG sing N N 106 CYS CB HB2 sing N N 107 CYS CB HB3 sing N N 108 CYS SG HG sing N N 109 CYS OXT HXT sing N N 110 GLN N CA sing N N 111 GLN N H sing N N 112 GLN N H2 sing N N 113 GLN CA C sing N N 114 GLN CA CB sing N N 115 GLN CA HA sing N N 116 GLN C O doub N N 117 GLN C OXT sing N N 118 GLN CB CG sing N N 119 GLN CB HB2 sing N N 120 GLN CB HB3 sing N N 121 GLN CG CD sing N N 122 GLN CG HG2 sing N N 123 GLN CG HG3 sing N N 124 GLN CD OE1 doub N N 125 GLN CD NE2 sing N N 126 GLN NE2 HE21 sing N N 127 GLN NE2 HE22 sing N N 128 GLN OXT HXT sing N N 129 GLU N CA sing N N 130 GLU N H sing N N 131 GLU N H2 sing N N 132 GLU CA C sing N N 133 GLU CA CB sing N N 134 GLU CA HA sing N N 135 GLU C O doub N N 136 GLU C OXT sing N N 137 GLU CB CG sing N N 138 GLU CB HB2 sing N N 139 GLU CB HB3 sing N N 140 GLU CG CD sing N N 141 GLU CG HG2 sing N N 142 GLU CG HG3 sing N N 143 GLU CD OE1 doub N N 144 GLU CD OE2 sing N N 145 GLU OE2 HE2 sing N N 146 GLU OXT HXT sing N N 147 GLY N CA sing N N 148 GLY N H sing N N 149 GLY N H2 sing N N 150 GLY CA C sing N N 151 GLY CA HA2 sing N N 152 GLY CA HA3 sing N N 153 GLY C O doub N N 154 GLY C OXT sing N N 155 GLY OXT HXT sing N N 156 HIS N CA sing N N 157 HIS N H sing N N 158 HIS N H2 sing N N 159 HIS CA C sing N N 160 HIS CA CB sing N N 161 HIS CA HA sing N N 162 HIS C O doub N N 163 HIS C OXT sing N N 164 HIS CB CG sing N N 165 HIS CB HB2 sing N N 166 HIS CB HB3 sing N N 167 HIS CG ND1 sing Y N 168 HIS CG CD2 doub Y N 169 HIS ND1 CE1 doub Y N 170 HIS ND1 HD1 sing N N 171 HIS CD2 NE2 sing Y N 172 HIS CD2 HD2 sing N N 173 HIS CE1 NE2 sing Y N 174 HIS CE1 HE1 sing N N 175 HIS NE2 HE2 sing N N 176 HIS OXT HXT sing N N 177 HOH O H1 sing N N 178 HOH O H2 sing N N 179 ILE N CA sing N N 180 ILE N H sing N N 181 ILE N H2 sing N N 182 ILE CA C sing N N 183 ILE CA CB sing N N 184 ILE CA HA sing N N 185 ILE C O doub N N 186 ILE C OXT sing N N 187 ILE CB CG1 sing N N 188 ILE CB CG2 sing N N 189 ILE CB HB sing N N 190 ILE CG1 CD1 sing N N 191 ILE CG1 HG12 sing N N 192 ILE CG1 HG13 sing N N 193 ILE CG2 HG21 sing N N 194 ILE CG2 HG22 sing N N 195 ILE CG2 HG23 sing N N 196 ILE CD1 HD11 sing N N 197 ILE CD1 HD12 sing N N 198 ILE CD1 HD13 sing N N 199 ILE OXT HXT sing N N 200 LEU N CA sing N N 201 LEU N H sing N N 202 LEU N H2 sing N N 203 LEU CA C sing N N 204 LEU CA CB sing N N 205 LEU CA HA sing N N 206 LEU C O doub N N 207 LEU C OXT sing N N 208 LEU CB CG sing N N 209 LEU CB HB2 sing N N 210 LEU CB HB3 sing N N 211 LEU CG CD1 sing N N 212 LEU CG CD2 sing N N 213 LEU CG HG sing N N 214 LEU CD1 HD11 sing N N 215 LEU CD1 HD12 sing N N 216 LEU CD1 HD13 sing N N 217 LEU CD2 HD21 sing N N 218 LEU CD2 HD22 sing N N 219 LEU CD2 HD23 sing N N 220 LEU OXT HXT sing N N 221 LYS N CA sing N N 222 LYS N H sing N N 223 LYS N H2 sing N N 224 LYS CA C sing N N 225 LYS CA CB sing N N 226 LYS CA HA sing N N 227 LYS C O doub N N 228 LYS C OXT sing N N 229 LYS CB CG sing N N 230 LYS CB HB2 sing N N 231 LYS CB HB3 sing N N 232 LYS CG CD sing N N 233 LYS CG HG2 sing N N 234 LYS CG HG3 sing N N 235 LYS CD CE sing N N 236 LYS CD HD2 sing N N 237 LYS CD HD3 sing N N 238 LYS CE NZ sing N N 239 LYS CE HE2 sing N N 240 LYS CE HE3 sing N N 241 LYS NZ HZ1 sing N N 242 LYS NZ HZ2 sing N N 243 LYS NZ HZ3 sing N N 244 LYS OXT HXT sing N N 245 MET N CA sing N N 246 MET N H sing N N 247 MET N H2 sing N N 248 MET CA C sing N N 249 MET CA CB sing N N 250 MET CA HA sing N N 251 MET C O doub N N 252 MET C OXT sing N N 253 MET CB CG sing N N 254 MET CB HB2 sing N N 255 MET CB HB3 sing N N 256 MET CG SD sing N N 257 MET CG HG2 sing N N 258 MET CG HG3 sing N N 259 MET SD CE sing N N 260 MET CE HE1 sing N N 261 MET CE HE2 sing N N 262 MET CE HE3 sing N N 263 MET OXT HXT sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 2OSS 'Ensemble of 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, 3D7C' 2 ? 'experimental model' PDB 2OUO 'Ensemble of 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, 3D7C' 3 ? 'experimental model' PDB 2GRC 'Ensemble of 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, 3D7C' 4 ? 'experimental model' PDB 2OO1 'Ensemble of 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, 3D7C' 5 ? 'experimental model' PDB 3DAI 'Ensemble of 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, 3D7C' 6 ? 'experimental model' PDB 3D7C 'Ensemble of 2OSS, 2OUO, 2GRC, 2OO1, 3DAI, 3D7C' # _atom_sites.entry_id 3UVY _atom_sites.fract_transf_matrix[1][1] 0.023135 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019811 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019242 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_