HEADER ISOMERASE 30-NOV-11 3UW1 TITLE CRYSTAL STRUCTURE OF RIBOSE-5-PHOSPHATE ISOMERASE A FROM BURKHOLDERIA TITLE 2 THAILANDENSIS WITH RIBOSE-5-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE A; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264 / ATCC 700388 / DSM 13276 / CIP 106301; SOURCE 5 GENE: BTH_I2516, RPIA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 ISOMERASE, RIBOSE ISOMERASE, RIBOSE-5-PHOSPHATE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 28-FEB-24 3UW1 1 REMARK SEQADV REVDAT 3 08-NOV-17 3UW1 1 REMARK REVDAT 2 30-OCT-13 3UW1 1 JRNL REVDAT 1 21-DEC-11 3UW1 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.2_869 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 25399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3868 - 3.5478 1.00 2808 146 0.1573 0.1721 REMARK 3 2 3.5478 - 2.8169 1.00 2745 140 0.1540 0.1686 REMARK 3 3 2.8169 - 2.4611 0.99 2727 140 0.1437 0.1592 REMARK 3 4 2.4611 - 2.2362 0.99 2735 147 0.1385 0.1590 REMARK 3 5 2.2362 - 2.0760 0.99 2711 140 0.1316 0.2079 REMARK 3 6 2.0760 - 1.9536 0.98 2704 145 0.1440 0.1628 REMARK 3 7 1.9536 - 1.8558 0.98 2641 136 0.1413 0.1862 REMARK 3 8 1.8558 - 1.7750 0.96 2651 134 0.1428 0.1659 REMARK 3 9 1.7750 - 1.7067 0.89 2414 135 0.1638 0.1933 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1796 REMARK 3 ANGLE : 1.296 2439 REMARK 3 CHIRALITY : 0.079 286 REMARK 3 PLANARITY : 0.006 322 REMARK 3 DIHEDRAL : 11.286 666 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 4:25) REMARK 3 ORIGIN FOR THE GROUP (A): 51.1421 60.1840 74.1633 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.1018 REMARK 3 T33: 0.0593 T12: 0.0021 REMARK 3 T13: -0.0211 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.2766 L22: 0.9162 REMARK 3 L33: 0.4912 L12: -1.0025 REMARK 3 L13: -1.2116 L23: 0.4556 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: -0.4328 S13: 0.0896 REMARK 3 S21: 0.2453 S22: 0.0350 S23: -0.0272 REMARK 3 S31: -0.0194 S32: 0.1314 S33: 0.0451 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 26:53) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2530 65.6357 67.3977 REMARK 3 T TENSOR REMARK 3 T11: 0.0502 T22: 0.0368 REMARK 3 T33: 0.0722 T12: -0.0123 REMARK 3 T13: -0.0188 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.5368 L22: 0.7957 REMARK 3 L33: 0.8878 L12: -0.5027 REMARK 3 L13: -0.2919 L23: -0.3282 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.1788 S13: 0.1697 REMARK 3 S21: 0.2333 S22: 0.0455 S23: -0.0792 REMARK 3 S31: -0.1447 S32: 0.1031 S33: -0.0104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 54:85) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9813 69.2017 59.0479 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0481 REMARK 3 T33: 0.0739 T12: -0.0242 REMARK 3 T13: -0.0200 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.6621 L22: 2.6106 REMARK 3 L33: 2.4239 L12: -0.4635 REMARK 3 L13: 0.0766 L23: 0.7054 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: 0.0119 S13: 0.0788 REMARK 3 S21: 0.0770 S22: 0.0555 S23: -0.0666 REMARK 3 S31: -0.1351 S32: 0.1502 S33: -0.0401 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 86:129) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3885 57.6928 58.5726 REMARK 3 T TENSOR REMARK 3 T11: 0.0299 T22: 0.0260 REMARK 3 T33: 0.0294 T12: 0.0053 REMARK 3 T13: -0.0083 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.2632 L22: 0.8177 REMARK 3 L33: 1.8990 L12: 0.5876 REMARK 3 L13: -0.2966 L23: -0.2904 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.0006 S13: 0.0187 REMARK 3 S21: -0.0034 S22: 0.0452 S23: 0.0074 REMARK 3 S31: -0.0148 S32: 0.0541 S33: -0.0210 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 130:179) REMARK 3 ORIGIN FOR THE GROUP (A): 36.7757 62.3493 47.8008 REMARK 3 T TENSOR REMARK 3 T11: 0.0427 T22: 0.0453 REMARK 3 T33: 0.0642 T12: 0.0096 REMARK 3 T13: 0.0006 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.9818 L22: 1.1124 REMARK 3 L33: 1.9686 L12: 0.0353 REMARK 3 L13: 0.0727 L23: -0.3715 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.0347 S13: 0.2068 REMARK 3 S21: -0.0324 S22: -0.0642 S23: -0.0364 REMARK 3 S31: -0.1717 S32: -0.0354 S33: 0.0243 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 180:234) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4366 52.4244 55.6274 REMARK 3 T TENSOR REMARK 3 T11: 0.0347 T22: 0.0251 REMARK 3 T33: 0.0344 T12: -0.0134 REMARK 3 T13: 0.0053 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7654 L22: 0.4968 REMARK 3 L33: 1.9566 L12: -0.2390 REMARK 3 L13: 0.1865 L23: 0.2759 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: 0.0276 S13: -0.0191 REMARK 3 S21: -0.0136 S22: 0.0101 S23: 0.0151 REMARK 3 S31: 0.1045 S32: 0.0312 S33: -0.0375 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25863 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.15500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INTERNAL TRACKING NUMBER 225985D11. REMARK 280 WIZARD 3/4 SCREEN CONDITION D11: 30%(W/V) PEG 5000 MME, 0.1M MES, REMARK 280 0.2M AMMONIUM SULFATE, BUTHA.00944.A.A1 PW33411 AT 33.6 MG/ML, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.77900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.21000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.77900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.81475 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 82.03709 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.80212 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 123.05563 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 390 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 3 CB CG CD1 CD2 REMARK 470 ASN A 177 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 212 -47.43 -130.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3U7J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBOSE-5-PHOSPHATE ISOMERASE A FROM REMARK 900 BURKHOLDERIA THAILANDENSIS REMARK 900 RELATED ID: BUTHA.00499A RELATED DB: TARGETDB REMARK 900 RELATED ID: BUTHA.00944.A RELATED DB: TARGETDB DBREF 3UW1 A 1 235 UNP Q2SVL4 Q2SVL4_BURTA 1 235 SEQADV 3UW1 GLY A -3 UNP Q2SVL4 EXPRESSION TAG SEQADV 3UW1 PRO A -2 UNP Q2SVL4 EXPRESSION TAG SEQADV 3UW1 GLY A -1 UNP Q2SVL4 EXPRESSION TAG SEQADV 3UW1 SER A 0 UNP Q2SVL4 EXPRESSION TAG SEQRES 1 A 239 GLY PRO GLY SER MET THR LEU LEU MET THR GLN ASP GLU SEQRES 2 A 239 LEU LYS ARG LEU VAL GLY GLU ALA ALA ALA ARG TYR VAL SEQRES 3 A 239 THR ASP ASN VAL PRO GLN GLY ALA VAL ILE GLY VAL GLY SEQRES 4 A 239 THR GLY SER THR ALA ASN CYS PHE ILE ASP ALA LEU ALA SEQRES 5 A 239 ALA VAL LYS ASP ARG TYR ARG GLY ALA VAL SER SER SER SEQRES 6 A 239 VAL ALA THR THR GLU ARG LEU LYS SER HIS GLY ILE ARG SEQRES 7 A 239 VAL PHE ASP LEU ASN GLU ILE GLU SER LEU GLN VAL TYR SEQRES 8 A 239 VAL ASP GLY ALA ASP GLU ILE ASP GLU SER GLY ALA MET SEQRES 9 A 239 ILE LYS GLY GLY GLY GLY ALA LEU THR ARG GLU LYS ILE SEQRES 10 A 239 VAL ALA SER VAL ALA GLU THR PHE VAL CYS ILE ALA ASP SEQRES 11 A 239 ALA SER LYS ARG VAL ALA MET LEU GLY GLN PHE PRO LEU SEQRES 12 A 239 PRO VAL GLU VAL VAL PRO MET ALA ARG THR ALA ILE GLY SEQRES 13 A 239 ARG ARG LEU ALA ALA LEU GLY GLY VAL PRO VAL LEU ARG SEQRES 14 A 239 VAL LYS GLN ASP GLY THR PRO TYR VAL THR ASP ASN GLY SEQRES 15 A 239 ASN GLU ILE LEU ASP VAL LYS GLY LEU ARG ILE ASP ASP SEQRES 16 A 239 PRO ARG ALA LEU GLU ALA ALA ILE ASN GLY TRP PRO GLY SEQRES 17 A 239 VAL VAL THR VAL GLY LEU PHE ALA GLN ARG GLY ALA ASP SEQRES 18 A 239 LEU CYS LEU LEU GLY THR GLU HIS GLY VAL GLU THR LEU SEQRES 19 A 239 ARG TYR ALA ALA ARG HET R5P A 400 25 HETNAM R5P RIBOSE-5-PHOSPHATE FORMUL 2 R5P C5 H11 O8 P FORMUL 3 HOH *276(H2 O) HELIX 1 1 THR A 6 VAL A 26 1 21 HELIX 2 2 GLY A 37 ALA A 49 1 13 HELIX 3 3 VAL A 50 TYR A 54 5 5 HELIX 4 4 SER A 61 HIS A 71 1 11 HELIX 5 5 ASP A 77 ILE A 81 5 5 HELIX 6 6 ALA A 107 VAL A 117 1 11 HELIX 7 7 SER A 128 ARG A 130 5 3 HELIX 8 8 ALA A 147 LEU A 158 1 12 HELIX 9 9 ASP A 191 GLY A 201 1 11 SHEET 1 A 6 GLY A 56 SER A 59 0 SHEET 2 A 6 VAL A 31 VAL A 34 1 N VAL A 34 O VAL A 58 SHEET 3 A 6 LEU A 84 ASP A 89 1 O VAL A 88 N GLY A 33 SHEET 4 A 6 ALA A 118 ASP A 126 1 O VAL A 122 N TYR A 87 SHEET 5 A 6 LEU A 218 THR A 223 1 O LEU A 218 N CYS A 123 SHEET 6 A 6 GLY A 226 ARG A 231 -1 O GLU A 228 N LEU A 221 SHEET 1 B 3 GLU A 93 ILE A 94 0 SHEET 2 B 3 MET A 100 ILE A 101 -1 O ILE A 101 N GLU A 93 SHEET 3 B 3 LEU A 210 PHE A 211 -1 O PHE A 211 N MET A 100 SHEET 1 C 4 VAL A 161 LEU A 164 0 SHEET 2 C 4 GLU A 180 LYS A 185 -1 O ASP A 183 N VAL A 163 SHEET 3 C 4 LEU A 139 VAL A 143 -1 N VAL A 141 O LEU A 182 SHEET 4 C 4 VAL A 205 VAL A 208 -1 O VAL A 206 N GLU A 142 SITE 1 AC1 19 THR A 36 SER A 38 THR A 39 ASP A 89 SITE 2 AC1 19 GLY A 90 ALA A 91 ASP A 92 LYS A 102 SITE 3 AC1 19 GLY A 103 GLY A 104 GLY A 105 GLY A 106 SITE 4 AC1 19 GLU A 111 LYS A 129 HOH A 257 HOH A 262 SITE 5 AC1 19 HOH A 283 HOH A 287 HOH A 368 CRYST1 80.420 73.558 52.032 90.00 127.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012435 0.000000 0.009705 0.00000 SCALE2 0.000000 0.013595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024379 0.00000