HEADER PROTEIN BINDING 01-DEC-11 3UW9 TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX TITLE 2 WITH A DIACETYLATED HISTONE 4 PEPTIDE (H4K8ACK12AC) CAVEAT 3UW9 ALY E 1 HAS WRONG CHIRALITY AT ATOM CA ALY E 11 HAS WRONG CAVEAT 2 3UW9 CHIRALITY AT ATOM CA ALY F 1 HAS WRONG CHIRALITY AT ATOM CA CAVEAT 3 3UW9 ALY F 5 HAS WRONG CHIRALITY AT ATOM CA THE CHIRALITY OF ALY CAVEAT 4 3UW9 AND CHAINS E AND F IS NOT IN AGREEMENT WITH THE LIGAND CAVEAT 5 3UW9 DEFINITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDEUS 44-168; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE 4 PEPTIDE (H4K8ACK12AC); COMPND 9 CHAIN: E, F; COMPND 10 FRAGMENT: UNP RESIDUES 8-18; COMPND 11 SYNONYM: PEPTIDE (H4K8ACK12AC); COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS BROMODOMAIN, BROMODOMAIN CONTAINING PROTEIN 4, CAP, HUNK1, MCAP, KEYWDS 2 MITOTIC CHROMOSOME ASSOCIATED PROTEIN, PEPTIDE COMPLEX, STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, SGC, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,I.FELLETAR,S.PICAUD,T.KEATES,J.MUNIZ,O.GILEADI, AUTHOR 2 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT,C.BOUNTRA,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 16-OCT-24 3UW9 1 REMARK REVDAT 5 03-APR-24 3UW9 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQADV SEQRES LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 06-DEC-23 3UW9 1 REMARK REVDAT 3 13-SEP-23 3UW9 1 CAVEAT COMPND SOURCE REMARK REVDAT 3 2 1 DBREF SEQADV SEQRES LINK REVDAT 3 3 1 SITE ATOM REVDAT 2 11-APR-12 3UW9 1 JRNL REVDAT 1 14-MAR-12 3UW9 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,M.MANGOS,T.KEATES,J.P.LAMBERT, JRNL AUTH 2 D.BARSYTE-LOVEJOY,I.FELLETAR,R.VOLKMER,S.MULLER,T.PAWSON, JRNL AUTH 3 A.C.GINGRAS,C.H.ARROWSMITH,S.KNAPP JRNL TITL HISTONE RECOGNITION AND LARGE-SCALE STRUCTURAL ANALYSIS OF JRNL TITL 2 THE HUMAN BROMODOMAIN FAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 214 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22464331 JRNL DOI 10.1016/J.CELL.2012.02.013 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1947 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.840 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3918 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2614 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5337 ; 1.682 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6365 ; 1.688 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;38.372 ;25.851 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 647 ;16.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 581 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4288 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 755 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4942 17.6497 52.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.0505 REMARK 3 T33: 0.0715 T12: -0.0255 REMARK 3 T13: -0.0164 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.0901 L22: 5.3557 REMARK 3 L33: 5.3152 L12: -0.4561 REMARK 3 L13: -1.3199 L23: 2.9151 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.0351 S13: 0.1916 REMARK 3 S21: 0.1031 S22: -0.0795 S23: 0.1571 REMARK 3 S31: 0.1926 S32: 0.0018 S33: 0.1038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 166 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9963 26.8964 28.2650 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.1095 REMARK 3 T33: 0.0751 T12: 0.0621 REMARK 3 T13: 0.0537 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 5.8511 L22: 7.3505 REMARK 3 L33: 3.3557 L12: -2.1354 REMARK 3 L13: -0.7403 L23: -1.3931 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: 0.2329 S13: 0.4449 REMARK 3 S21: 0.0406 S22: 0.0414 S23: -0.1450 REMARK 3 S31: -0.3246 S32: -0.2198 S33: -0.1686 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 56 C 167 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3642 -1.1643 27.5994 REMARK 3 T TENSOR REMARK 3 T11: 0.3268 T22: 0.1335 REMARK 3 T33: 0.1657 T12: 0.0352 REMARK 3 T13: 0.0072 T23: -0.1233 REMARK 3 L TENSOR REMARK 3 L11: 4.0881 L22: 5.5164 REMARK 3 L33: 5.6920 L12: 1.0728 REMARK 3 L13: 1.5715 L23: 0.3021 REMARK 3 S TENSOR REMARK 3 S11: 0.4523 S12: 0.0491 S13: -0.1826 REMARK 3 S21: -0.0359 S22: -0.3350 S23: 0.3807 REMARK 3 S31: 0.6826 S32: -0.1943 S33: -0.1173 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 59 D 167 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5739 22.3437 29.7943 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.1148 REMARK 3 T33: 0.0998 T12: 0.0225 REMARK 3 T13: -0.0165 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 6.8787 L22: 3.3838 REMARK 3 L33: 2.0901 L12: -0.4320 REMARK 3 L13: -0.3811 L23: -0.0609 REMARK 3 S TENSOR REMARK 3 S11: 0.1061 S12: -0.2104 S13: 0.1214 REMARK 3 S21: 0.0359 S22: -0.1233 S23: 0.0349 REMARK 3 S31: 0.0869 S32: -0.0862 S33: 0.0173 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3UW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : 0.14600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : 0.98000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: ENSEMBLE OF PDB ENTRIES 2OSS, 2OUO, 2GRC, 2OO1, REMARK 200 3DAI, 3D7C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.3M LICL 15% PEG6000, 10% REMARK 280 ETGLY, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.35000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.80000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.17500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.80000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.52500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.17500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.52500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 42 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 SER B 42 REMARK 465 MET B 43 REMARK 465 ASN B 44 REMARK 465 PRO B 45 REMARK 465 PRO B 46 REMARK 465 PRO B 47 REMARK 465 PRO B 48 REMARK 465 GLU B 49 REMARK 465 THR B 50 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 PRO B 53 REMARK 465 ASN B 54 REMARK 465 LYS B 55 REMARK 465 PRO B 56 REMARK 465 LYS B 57 REMARK 465 GLU B 167 REMARK 465 GLU B 168 REMARK 465 SER C 42 REMARK 465 MET C 43 REMARK 465 ASN C 44 REMARK 465 PRO C 45 REMARK 465 PRO C 46 REMARK 465 PRO C 47 REMARK 465 PRO C 48 REMARK 465 GLU C 49 REMARK 465 THR C 50 REMARK 465 SER C 51 REMARK 465 ASN C 52 REMARK 465 PRO C 53 REMARK 465 ASN C 54 REMARK 465 LYS C 55 REMARK 465 GLU C 168 REMARK 465 SER D 42 REMARK 465 MET D 43 REMARK 465 ASN D 44 REMARK 465 PRO D 45 REMARK 465 PRO D 46 REMARK 465 PRO D 47 REMARK 465 PRO D 48 REMARK 465 GLU D 49 REMARK 465 THR D 50 REMARK 465 SER D 51 REMARK 465 ASN D 52 REMARK 465 PRO D 53 REMARK 465 ASN D 54 REMARK 465 LYS D 55 REMARK 465 PRO D 56 REMARK 465 LYS D 57 REMARK 465 ARG D 58 REMARK 465 GLU D 168 REMARK 465 GLY E 0 REMARK 465 GLY E 6 REMARK 465 GLY E 7 REMARK 465 ALA E 8 REMARK 465 LYS E 9 REMARK 465 ARG E 10 REMARK 465 GLY F 0 REMARK 465 GLY F 7 REMARK 465 ALA F 8 REMARK 465 LYS F 9 REMARK 465 ARG F 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 43 CG SD CE REMARK 470 ARG A 58 CD NE CZ NH1 NH2 REMARK 470 ARG A 68 CZ NH1 NH2 REMARK 470 LYS A 99 CD CE NZ REMARK 470 LYS A 112 CE NZ REMARK 470 THR A 166 OG1 CG2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 91 CD CE NZ REMARK 470 LEU B 92 CG CD1 CD2 REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 LYS B 112 CE NZ REMARK 470 LYS B 155 CD CE NZ REMARK 470 GLN B 159 CG CD OE1 NE2 REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 THR B 166 OG1 CG2 REMARK 470 LYS C 57 CG CD CE NZ REMARK 470 LYS C 91 CG CD CE NZ REMARK 470 LEU C 94 CG CD1 CD2 REMARK 470 LYS C 102 CE NZ REMARK 470 LYS C 112 CD CE NZ REMARK 470 LYS C 141 CG CD CE NZ REMARK 470 GLU C 167 CG CD OE1 OE2 REMARK 470 GLN D 59 CG CD OE1 NE2 REMARK 470 THR D 60 OG1 CG2 REMARK 470 ARG D 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 72 CD CE NZ REMARK 470 LYS D 76 CE NZ REMARK 470 GLN D 78 CD OE1 NE2 REMARK 470 LYS D 91 CE NZ REMARK 470 LYS D 102 CD CE NZ REMARK 470 LYS D 112 CD CE NZ REMARK 470 GLU D 167 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 43 N MET A 43 CA 0.125 REMARK 500 MET A 43 CA MET A 43 CB 0.154 REMARK 500 TRP A 75 CE2 TRP A 75 CD2 0.074 REMARK 500 TRP C 120 CE2 TRP C 120 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 68 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 113 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ALY E 5 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 ALY F 5 C - N - CA ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 57 121.71 -33.55 REMARK 500 VAL C 87 106.54 -56.23 REMARK 500 VAL C 90 -70.89 -62.66 REMARK 500 LEU C 94 75.20 -118.73 REMARK 500 ALY F 5 62.68 -108.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO C 56 LYS C 57 -149.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALY E 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN E OF HISTONE H4 DBREF 3UW9 A 42 168 UNP O60885 BRD4_HUMAN 42 168 DBREF 3UW9 B 42 168 UNP O60885 BRD4_HUMAN 42 168 DBREF 3UW9 C 42 168 UNP O60885 BRD4_HUMAN 42 168 DBREF 3UW9 D 42 168 UNP O60885 BRD4_HUMAN 42 168 DBREF 3UW9 E 0 10 UNP P62805 H4_HUMAN 8 18 DBREF 3UW9 F 0 10 UNP P62805 H4_HUMAN 8 18 SEQADV 3UW9 MET A 43 UNP O60885 THR 43 CONFLICT SEQADV 3UW9 MET B 43 UNP O60885 THR 43 CONFLICT SEQADV 3UW9 MET C 43 UNP O60885 THR 43 CONFLICT SEQADV 3UW9 MET D 43 UNP O60885 THR 43 CONFLICT SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU SEQRES 1 B 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 B 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 B 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 B 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 B 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 B 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 B 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 B 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 B 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 B 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU SEQRES 1 C 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 C 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 C 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 C 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 C 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 C 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 C 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 C 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 C 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 C 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU SEQRES 1 D 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 D 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 D 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 D 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 D 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 D 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 D 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 D 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 D 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 D 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU SEQRES 1 E 11 GLY ALY GLY LEU GLY ALY GLY GLY ALA LYS ARG SEQRES 1 F 11 GLY ALY GLY LEU GLY ALY GLY GLY ALA LYS ARG MODRES 3UW9 ALY E 1 LYS MODIFIED RESIDUE MODRES 3UW9 ALY E 5 LYS MODIFIED RESIDUE MODRES 3UW9 ALY F 1 LYS MODIFIED RESIDUE MODRES 3UW9 ALY F 5 LYS MODIFIED RESIDUE HET ALY E 1 12 HET ALY E 5 12 HET ALY F 1 12 HET ALY F 5 12 HETNAM ALY N(6)-ACETYLLYSINE FORMUL 5 ALY 4(C8 H16 N2 O3) FORMUL 7 HOH *124(H2 O) HELIX 1 1 LYS A 55 VAL A 69 1 15 HELIX 2 2 VAL A 69 HIS A 77 1 9 HELIX 3 3 ALA A 80 GLN A 84 5 5 HELIX 4 4 ASP A 96 ILE A 101 1 6 HELIX 5 5 ASP A 106 ASN A 116 1 11 HELIX 6 6 ASN A 121 ASN A 140 1 20 HELIX 7 7 ASP A 144 ASN A 162 1 19 HELIX 8 8 GLN B 59 VAL B 69 1 11 HELIX 9 9 VAL B 69 LYS B 76 1 8 HELIX 10 10 ALA B 80 GLN B 84 5 5 HELIX 11 11 ASP B 88 ASN B 93 1 6 HELIX 12 12 ASP B 96 ILE B 101 1 6 HELIX 13 13 ASP B 106 ASN B 116 1 11 HELIX 14 14 ASN B 121 ASN B 140 1 20 HELIX 15 15 ASP B 144 ASN B 162 1 19 HELIX 16 16 GLN C 59 VAL C 69 1 11 HELIX 17 17 VAL C 69 LYS C 76 1 8 HELIX 18 18 ALA C 80 GLN C 84 5 5 HELIX 19 19 ASP C 88 ASN C 93 1 6 HELIX 20 20 ASP C 96 ILE C 101 1 6 HELIX 21 21 ASP C 106 ASN C 116 1 11 HELIX 22 22 ASN C 121 ASN C 140 1 20 HELIX 23 23 ASP C 144 ASN C 162 1 19 HELIX 24 24 THR D 60 VAL D 69 1 10 HELIX 25 25 VAL D 69 HIS D 77 1 9 HELIX 26 26 ALA D 80 GLN D 84 5 5 HELIX 27 27 ASP D 88 ASN D 93 1 6 HELIX 28 28 ASP D 96 ILE D 101 1 6 HELIX 29 29 ASP D 106 ASN D 116 1 11 HELIX 30 30 ASN D 121 ASN D 140 1 20 HELIX 31 31 ASP D 144 ASN D 162 1 19 LINK C ALY E 1 N GLY E 2 1555 1555 1.33 LINK C GLY E 4 N ALY E 5 1555 1555 1.34 LINK C ALY F 1 N GLY F 2 1555 1555 1.33 LINK C GLY F 4 N ALY F 5 1555 1555 1.35 LINK C ALY F 5 N GLY F 6 1555 1555 1.33 SITE 1 AC1 5 VAL C 87 LEU C 92 CYS C 136 ASN C 140 SITE 2 AC1 5 GLY E 4 SITE 1 AC2 9 TRP A 81 VAL A 87 LEU A 92 ASN A 140 SITE 2 AC2 9 ASP A 145 HOH A 170 ASP C 145 ALY E 5 SITE 3 AC2 9 HOH E 12 CRYST1 99.600 99.600 136.700 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007315 0.00000