data_3UWA # _entry.id 3UWA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UWA RCSB RCSB069288 WWPDB D_1000069288 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3UWB _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UWA _pdbx_database_status.recvd_initial_deposition_date 2011-12-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lorimer, D.' 1 'Abendroth, J.' 2 'Edwards, T.E.' 3 'Burgin, A.' 4 'Segall, A.' 5 'Rohwer, F.' 6 # _citation.id primary _citation.title 'Structure and function of a cyanophage-encoded peptide deformylase.' _citation.journal_abbrev 'ISME J' _citation.journal_volume 7 _citation.page_first 1150 _citation.page_last 1160 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1751-7362 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23407310 _citation.pdbx_database_id_DOI 10.1038/ismej.2013.4 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Frank, J.A.' 1 primary 'Lorimer, D.' 2 primary 'Youle, M.' 3 primary 'Witte, P.' 4 primary 'Craig, T.' 5 primary 'Abendroth, J.' 6 primary 'Rohwer, F.' 7 primary 'Edwards, R.A.' 8 primary 'Segall, A.M.' 9 primary 'Burgin, A.B.' 10 # _cell.entry_id 3UWA _cell.length_a 47.460 _cell.length_b 58.630 _cell.length_c 62.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UWA _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RIIA-RIIB membrane-associated protein' 17844.721 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 2 ? ? ? ? 4 water nat water 18.015 117 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSLKIKTIGDRCLRQKSEEVEFDKKE(MSE)SELYDQ(MSE)CEA(MSE)WASDGIGLAAPQVGINKRVIVVDETTEEHG KYAHL(MSE)VNPKITWKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGIL FVDYFNDKEN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSLKIKTIGDRCLRQKSEEVEFDKKEMSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKIT WKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFNDKEN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LEU n 1 4 LYS n 1 5 ILE n 1 6 LYS n 1 7 THR n 1 8 ILE n 1 9 GLY n 1 10 ASP n 1 11 ARG n 1 12 CYS n 1 13 LEU n 1 14 ARG n 1 15 GLN n 1 16 LYS n 1 17 SER n 1 18 GLU n 1 19 GLU n 1 20 VAL n 1 21 GLU n 1 22 PHE n 1 23 ASP n 1 24 LYS n 1 25 LYS n 1 26 GLU n 1 27 MSE n 1 28 SER n 1 29 GLU n 1 30 LEU n 1 31 TYR n 1 32 ASP n 1 33 GLN n 1 34 MSE n 1 35 CYS n 1 36 GLU n 1 37 ALA n 1 38 MSE n 1 39 TRP n 1 40 ALA n 1 41 SER n 1 42 ASP n 1 43 GLY n 1 44 ILE n 1 45 GLY n 1 46 LEU n 1 47 ALA n 1 48 ALA n 1 49 PRO n 1 50 GLN n 1 51 VAL n 1 52 GLY n 1 53 ILE n 1 54 ASN n 1 55 LYS n 1 56 ARG n 1 57 VAL n 1 58 ILE n 1 59 VAL n 1 60 VAL n 1 61 ASP n 1 62 GLU n 1 63 THR n 1 64 THR n 1 65 GLU n 1 66 GLU n 1 67 HIS n 1 68 GLY n 1 69 LYS n 1 70 TYR n 1 71 ALA n 1 72 HIS n 1 73 LEU n 1 74 MSE n 1 75 VAL n 1 76 ASN n 1 77 PRO n 1 78 LYS n 1 79 ILE n 1 80 THR n 1 81 TRP n 1 82 LYS n 1 83 SER n 1 84 GLU n 1 85 GLU n 1 86 LYS n 1 87 VAL n 1 88 LEU n 1 89 PHE n 1 90 ASP n 1 91 GLU n 1 92 GLY n 1 93 CYS n 1 94 LEU n 1 95 SER n 1 96 VAL n 1 97 PRO n 1 98 ASP n 1 99 GLN n 1 100 ASN n 1 101 GLY n 1 102 GLU n 1 103 VAL n 1 104 LEU n 1 105 ARG n 1 106 PRO n 1 107 LYS n 1 108 SER n 1 109 ILE n 1 110 LYS n 1 111 VAL n 1 112 THR n 1 113 PHE n 1 114 GLN n 1 115 ASN n 1 116 LYS n 1 117 ASP n 1 118 GLY n 1 119 LYS n 1 120 TYR n 1 121 LYS n 1 122 LYS n 1 123 TRP n 1 124 LYS n 1 125 LEU n 1 126 ASP n 1 127 GLY n 1 128 LEU n 1 129 ALA n 1 130 ALA n 1 131 ARG n 1 132 VAL n 1 133 VAL n 1 134 GLN n 1 135 HIS n 1 136 GLU n 1 137 ILE n 1 138 ASP n 1 139 HIS n 1 140 LEU n 1 141 GLU n 1 142 GLY n 1 143 ILE n 1 144 LEU n 1 145 PHE n 1 146 VAL n 1 147 ASP n 1 148 TYR n 1 149 PHE n 1 150 ASN n 1 151 ASP n 1 152 LYS n 1 153 GLU n 1 154 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SSSM7_299, YP_004324347.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 8109-3 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Synechococcus phage S-SSM7' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 445686 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'VCID 5538' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E3SLL2_9CAUD _struct_ref.pdbx_db_accession E3SLL2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGCLSVPDQNGEVLRP KSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFNDKEN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UWA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 27 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 154 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession E3SLL2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 128 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 153 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UWA GLY A 1 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 0 1 1 3UWA SER A 2 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 1 2 1 3UWA LEU A 3 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 2 3 1 3UWA LYS A 4 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 3 4 1 3UWA ILE A 5 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 4 5 1 3UWA LYS A 6 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 5 6 1 3UWA THR A 7 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 6 7 1 3UWA ILE A 8 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 7 8 1 3UWA GLY A 9 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 8 9 1 3UWA ASP A 10 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 9 10 1 3UWA ARG A 11 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 10 11 1 3UWA CYS A 12 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 11 12 1 3UWA LEU A 13 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 12 13 1 3UWA ARG A 14 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 13 14 1 3UWA GLN A 15 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 14 15 1 3UWA LYS A 16 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 15 16 1 3UWA SER A 17 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 16 17 1 3UWA GLU A 18 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 17 18 1 3UWA GLU A 19 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 18 19 1 3UWA VAL A 20 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 19 20 1 3UWA GLU A 21 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 20 21 1 3UWA PHE A 22 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 21 22 1 3UWA ASP A 23 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 22 23 1 3UWA LYS A 24 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 23 24 1 3UWA LYS A 25 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 24 25 1 3UWA GLU A 26 ? UNP E3SLL2 ? ? 'EXPRESSION TAG' 25 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 3UWA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.30 _exptl_crystal_grow.pdbx_details '60.8% MPD, 100MM NAHEPES PH 7.3- 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal, Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791750 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9791750 # _reflns.entry_id 3UWA _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.950 _reflns.number_obs 13168 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.08800 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 28.96 _reflns.pdbx_redundancy 8.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.00 _reflns_shell.percent_possible_all 95.7 _reflns_shell.Rmerge_I_obs 0.48400 _reflns_shell.pdbx_Rsym_value 0.484 _reflns_shell.meanI_over_sigI_obs 3.050 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 961 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3UWA _refine.ls_number_reflns_obs 13167 _refine.ls_number_reflns_all 13214 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.73 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.177 _refine.ls_R_factor_all 0.177 _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.207 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 649 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.B_iso_mean 24.86 _refine.aniso_B[1][1] 0.73000 _refine.aniso_B[2][2] -0.35000 _refine.aniso_B[3][3] -0.38000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model 'isotropic, TLS' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.146 _refine.pdbx_overall_ESU_R_Free 0.132 _refine.overall_SU_ML 0.085 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.684 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1152 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1286 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 42.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.013 0.019 ? 1188 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 796 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.455 1.978 ? 1606 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.885 3.000 ? 1949 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.053 5.000 ? 147 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 40.147 25.000 ? 52 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.647 15.000 ? 197 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 20.953 15.000 ? 5 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.082 0.200 ? 181 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.020 ? 1303 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 230 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 782 _refine_ls_shell.R_factor_R_work 0.2550 _refine_ls_shell.percent_reflns_obs 95.19 _refine_ls_shell.R_factor_R_free 0.2970 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UWA _struct.title 'Crystal structure of a probable peptide deformylase from synechococcus phage S-SSM7' _struct.pdbx_descriptor 'RIIA-RIIB membrane-associated protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UWA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'SYNECHOCOCCUS PHAGE, probable peptide deformylase, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? ARG A 14 ? ASP A 9 ARG A 13 5 ? 5 HELX_P HELX_P2 2 ASP A 23 ? SER A 41 ? ASP A 22 SER A 40 1 ? 19 HELX_P HELX_P3 3 PRO A 49 ? GLY A 52 ? PRO A 48 GLY A 51 5 ? 4 HELX_P HELX_P4 4 ASP A 126 ? GLU A 141 ? ASP A 125 GLU A 140 1 ? 16 HELX_P HELX_P5 5 LEU A 144 ? PHE A 149 ? LEU A 143 PHE A 148 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 26 C ? ? ? 1_555 A MSE 27 N ? ? A GLU 25 A MSE 26 1_555 ? ? ? ? ? ? ? 1.338 ? covale2 covale ? ? A MSE 27 C ? ? ? 1_555 A SER 28 N ? ? A MSE 26 A SER 27 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale ? ? A GLN 33 C ? ? ? 1_555 A MSE 34 N ? ? A GLN 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A MSE 34 C ? ? ? 1_555 A CYS 35 N ? ? A MSE 33 A CYS 34 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A ALA 37 C ? ? ? 1_555 A MSE 38 N ? ? A ALA 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.344 ? covale6 covale ? ? A MSE 38 C ? ? ? 1_555 A TRP 39 N ? ? A MSE 37 A TRP 38 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale ? ? A LEU 73 C ? ? ? 1_555 A MSE 74 N ? ? A LEU 72 A MSE 73 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? A MSE 74 C ? ? ? 1_555 A VAL 75 N ? ? A MSE 73 A VAL 74 1_555 ? ? ? ? ? ? ? 1.311 ? metalc1 metalc ? ? B ZN . ZN ? ? ? 1_555 E HOH . O ? ? A ZN 200 A HOH 221 1_555 ? ? ? ? ? ? ? 2.009 ? metalc2 metalc ? ? A HIS 139 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 138 A ZN 200 1_555 ? ? ? ? ? ? ? 2.053 ? metalc3 metalc ? ? A HIS 135 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 134 A ZN 200 1_555 ? ? ? ? ? ? ? 2.096 ? metalc4 metalc ? ? A CYS 93 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 92 A ZN 200 1_555 ? ? ? ? ? ? ? 2.315 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 45 ? ALA A 47 ? GLY A 44 ALA A 46 A 2 VAL A 57 ? ASP A 61 ? VAL A 56 ASP A 60 A 3 ALA A 71 ? LYS A 82 ? ALA A 70 LYS A 81 A 4 ILE A 109 ? GLN A 114 ? ILE A 108 GLN A 113 A 5 TYR A 120 ? LEU A 125 ? TYR A 119 LEU A 124 B 1 LYS A 86 ? GLU A 91 ? LYS A 85 GLU A 90 B 2 GLY A 101 ? PRO A 106 ? GLY A 100 PRO A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 46 ? N LEU A 45 O VAL A 59 ? O VAL A 58 A 2 3 N VAL A 60 ? N VAL A 59 O HIS A 72 ? O HIS A 71 A 3 4 N LYS A 78 ? N LYS A 77 O THR A 112 ? O THR A 111 A 4 5 N PHE A 113 ? N PHE A 112 O LYS A 121 ? O LYS A 120 B 1 2 N GLU A 91 ? N GLU A 90 O GLY A 101 ? O GLY A 100 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 200' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MRD A 201' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MRD A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 93 ? CYS A 92 . ? 1_555 ? 2 AC1 4 HIS A 135 ? HIS A 134 . ? 1_555 ? 3 AC1 4 HIS A 139 ? HIS A 138 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH A 221 . ? 1_555 ? 5 AC2 4 GLU A 62 ? GLU A 61 . ? 1_555 ? 6 AC2 4 HIS A 72 ? HIS A 71 . ? 1_555 ? 7 AC2 4 LEU A 125 ? LEU A 124 . ? 1_555 ? 8 AC2 4 HOH E . ? HOH A 264 . ? 1_555 ? 9 AC3 7 ASP A 61 ? ASP A 60 . ? 1_555 ? 10 AC3 7 GLU A 62 ? GLU A 61 . ? 1_555 ? 11 AC3 7 ALA A 129 ? ALA A 128 . ? 1_555 ? 12 AC3 7 HOH E . ? HOH A 162 . ? 1_555 ? 13 AC3 7 HOH E . ? HOH A 230 . ? 1_555 ? 14 AC3 7 HOH E . ? HOH A 236 . ? 1_555 ? 15 AC3 7 HOH E . ? HOH A 264 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UWA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UWA _atom_sites.fract_transf_matrix[1][1] 0.021070 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017056 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016028 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 LYS 4 3 3 LYS LYS A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 GLY 9 8 8 GLY GLY A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 CYS 12 11 11 CYS CYS A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 ARG 14 13 13 ARG ARG A . n A 1 15 GLN 15 14 14 GLN GLN A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 SER 17 16 16 SER SER A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 GLU 19 18 18 GLU GLU A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 LYS 24 23 23 LYS LYS A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 GLU 26 25 25 GLU GLU A . n A 1 27 MSE 27 26 26 MSE MSE A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 GLU 29 28 28 GLU GLU A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 ASP 32 31 31 ASP ASP A . n A 1 33 GLN 33 32 32 GLN GLN A . n A 1 34 MSE 34 33 33 MSE MSE A . n A 1 35 CYS 35 34 34 CYS CYS A . n A 1 36 GLU 36 35 35 GLU GLU A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 MSE 38 37 37 MSE MSE A . n A 1 39 TRP 39 38 38 TRP TRP A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 SER 41 40 40 SER SER A . n A 1 42 ASP 42 41 41 ASP ASP A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ILE 44 43 43 ILE ILE A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 LEU 46 45 45 LEU LEU A . n A 1 47 ALA 47 46 46 ALA ALA A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 PRO 49 48 48 PRO PRO A . n A 1 50 GLN 50 49 49 GLN GLN A . n A 1 51 VAL 51 50 50 VAL VAL A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 LYS 55 54 54 LYS LYS A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 ASP 61 60 60 ASP ASP A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 THR 63 62 62 THR THR A . n A 1 64 THR 64 63 63 THR THR A . n A 1 65 GLU 65 64 64 GLU GLU A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 HIS 67 66 66 HIS HIS A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 TYR 70 69 69 TYR TYR A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 HIS 72 71 71 HIS HIS A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 MSE 74 73 73 MSE MSE A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 ASN 76 75 75 ASN ASN A . n A 1 77 PRO 77 76 76 PRO PRO A . n A 1 78 LYS 78 77 77 LYS LYS A . n A 1 79 ILE 79 78 78 ILE ILE A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 TRP 81 80 80 TRP TRP A . n A 1 82 LYS 82 81 81 LYS LYS A . n A 1 83 SER 83 82 82 SER SER A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 LYS 86 85 85 LYS LYS A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 ASP 90 89 89 ASP ASP A . n A 1 91 GLU 91 90 90 GLU GLU A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 CYS 93 92 92 CYS CYS A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 SER 95 94 94 SER SER A . n A 1 96 VAL 96 95 95 VAL VAL A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 ASP 98 97 97 ASP ASP A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 ASN 100 99 99 ASN ASN A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 ARG 105 104 104 ARG ARG A . n A 1 106 PRO 106 105 105 PRO PRO A . n A 1 107 LYS 107 106 106 LYS LYS A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 ILE 109 108 108 ILE ILE A . n A 1 110 LYS 110 109 109 LYS LYS A . n A 1 111 VAL 111 110 110 VAL VAL A . n A 1 112 THR 112 111 111 THR THR A . n A 1 113 PHE 113 112 112 PHE PHE A . n A 1 114 GLN 114 113 113 GLN GLN A . n A 1 115 ASN 115 114 114 ASN ASN A . n A 1 116 LYS 116 115 115 LYS LYS A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 TYR 120 119 119 TYR TYR A . n A 1 121 LYS 121 120 120 LYS LYS A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 TRP 123 122 122 TRP TRP A . n A 1 124 LYS 124 123 123 LYS LYS A . n A 1 125 LEU 125 124 124 LEU LEU A . n A 1 126 ASP 126 125 125 ASP ASP A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 LEU 128 127 127 LEU LEU A . n A 1 129 ALA 129 128 128 ALA ALA A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 ARG 131 130 130 ARG ARG A . n A 1 132 VAL 132 131 131 VAL VAL A . n A 1 133 VAL 133 132 132 VAL VAL A . n A 1 134 GLN 134 133 133 GLN GLN A . n A 1 135 HIS 135 134 134 HIS HIS A . n A 1 136 GLU 136 135 135 GLU GLU A . n A 1 137 ILE 137 136 136 ILE ILE A . n A 1 138 ASP 138 137 137 ASP ASP A . n A 1 139 HIS 139 138 138 HIS HIS A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 PHE 145 144 144 PHE PHE A . n A 1 146 VAL 146 145 145 VAL VAL A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 TYR 148 147 147 TYR TYR A . n A 1 149 PHE 149 148 148 PHE PHE A . n A 1 150 ASN 150 149 ? ? ? A . n A 1 151 ASP 151 150 ? ? ? A . n A 1 152 LYS 152 151 ? ? ? A . n A 1 153 GLU 153 152 ? ? ? A . n A 1 154 ASN 154 153 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 27 A MSE 26 ? MET SELENOMETHIONINE 2 A MSE 34 A MSE 33 ? MET SELENOMETHIONINE 3 A MSE 38 A MSE 37 ? MET SELENOMETHIONINE 4 A MSE 74 A MSE 73 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 221 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 NE2 ? A HIS 139 ? A HIS 138 ? 1_555 101.0 ? 2 O ? E HOH . ? A HOH 221 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 NE2 ? A HIS 135 ? A HIS 134 ? 1_555 106.9 ? 3 NE2 ? A HIS 139 ? A HIS 138 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 NE2 ? A HIS 135 ? A HIS 134 ? 1_555 111.9 ? 4 O ? E HOH . ? A HOH 221 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 93 ? A CYS 92 ? 1_555 122.5 ? 5 NE2 ? A HIS 139 ? A HIS 138 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 93 ? A CYS 92 ? 1_555 100.6 ? 6 NE2 ? A HIS 135 ? A HIS 134 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 93 ? A CYS 92 ? 1_555 112.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-09 2 'Structure model' 1 1 2013-03-06 3 'Structure model' 1 2 2013-06-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 3 ? CG ? A LYS 4 CG 2 1 Y 1 A LYS 3 ? CD ? A LYS 4 CD 3 1 Y 1 A LYS 3 ? CE ? A LYS 4 CE 4 1 Y 1 A LYS 3 ? NZ ? A LYS 4 NZ 5 1 Y 1 A LYS 5 ? CG ? A LYS 6 CG 6 1 Y 1 A LYS 5 ? CD ? A LYS 6 CD 7 1 Y 1 A LYS 5 ? CE ? A LYS 6 CE 8 1 Y 1 A LYS 5 ? NZ ? A LYS 6 NZ 9 1 Y 1 A GLN 14 ? CG ? A GLN 15 CG 10 1 Y 1 A GLN 14 ? CD ? A GLN 15 CD 11 1 Y 1 A GLN 14 ? OE1 ? A GLN 15 OE1 12 1 Y 1 A GLN 14 ? NE2 ? A GLN 15 NE2 13 1 Y 1 A GLU 20 ? CG ? A GLU 21 CG 14 1 Y 1 A GLU 20 ? CD ? A GLU 21 CD 15 1 Y 1 A GLU 20 ? OE1 ? A GLU 21 OE1 16 1 Y 1 A GLU 20 ? OE2 ? A GLU 21 OE2 17 1 Y 1 A LYS 24 ? CG ? A LYS 25 CG 18 1 Y 1 A LYS 24 ? CD ? A LYS 25 CD 19 1 Y 1 A LYS 24 ? CE ? A LYS 25 CE 20 1 Y 1 A LYS 24 ? NZ ? A LYS 25 NZ 21 1 Y 1 A GLU 65 ? CG ? A GLU 66 CG 22 1 Y 1 A GLU 65 ? CD ? A GLU 66 CD 23 1 Y 1 A GLU 65 ? OE1 ? A GLU 66 OE1 24 1 Y 1 A GLU 65 ? OE2 ? A GLU 66 OE2 25 1 Y 1 A GLU 83 ? CG ? A GLU 84 CG 26 1 Y 1 A GLU 83 ? CD ? A GLU 84 CD 27 1 Y 1 A GLU 83 ? OE1 ? A GLU 84 OE1 28 1 Y 1 A GLU 83 ? OE2 ? A GLU 84 OE2 29 1 Y 1 A ASP 97 ? CG ? A ASP 98 CG 30 1 Y 1 A ASP 97 ? OD1 ? A ASP 98 OD1 31 1 Y 1 A ASP 97 ? OD2 ? A ASP 98 OD2 32 1 Y 1 A LYS 118 ? CG ? A LYS 119 CG 33 1 Y 1 A LYS 118 ? CD ? A LYS 119 CD 34 1 Y 1 A LYS 118 ? CE ? A LYS 119 CE 35 1 Y 1 A LYS 118 ? NZ ? A LYS 119 NZ 36 1 Y 1 A LYS 123 ? CG ? A LYS 124 CG 37 1 Y 1 A LYS 123 ? CD ? A LYS 124 CD 38 1 Y 1 A LYS 123 ? CE ? A LYS 124 CE 39 1 Y 1 A LYS 123 ? NZ ? A LYS 124 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A ASN 149 ? A ASN 150 3 1 Y 1 A ASP 150 ? A ASP 151 4 1 Y 1 A LYS 151 ? A LYS 152 5 1 Y 1 A GLU 152 ? A GLU 153 6 1 Y 1 A ASN 153 ? A ASN 154 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 200 200 ZN ZN A . C 3 MRD 1 201 201 MRD MPD A . D 3 MRD 1 202 202 MRD MPD A . E 4 HOH 1 154 1 HOH HOH A . E 4 HOH 2 155 2 HOH HOH A . E 4 HOH 3 156 3 HOH HOH A . E 4 HOH 4 157 4 HOH HOH A . E 4 HOH 5 158 5 HOH HOH A . E 4 HOH 6 159 6 HOH HOH A . E 4 HOH 7 160 7 HOH HOH A . E 4 HOH 8 161 8 HOH HOH A . E 4 HOH 9 162 9 HOH HOH A . E 4 HOH 10 163 10 HOH HOH A . E 4 HOH 11 164 11 HOH HOH A . E 4 HOH 12 165 12 HOH HOH A . E 4 HOH 13 166 13 HOH HOH A . E 4 HOH 14 167 14 HOH HOH A . E 4 HOH 15 168 15 HOH HOH A . E 4 HOH 16 169 16 HOH HOH A . E 4 HOH 17 170 17 HOH HOH A . E 4 HOH 18 171 18 HOH HOH A . E 4 HOH 19 172 19 HOH HOH A . E 4 HOH 20 173 20 HOH HOH A . E 4 HOH 21 174 21 HOH HOH A . E 4 HOH 22 175 22 HOH HOH A . E 4 HOH 23 176 23 HOH HOH A . E 4 HOH 24 177 24 HOH HOH A . E 4 HOH 25 178 25 HOH HOH A . E 4 HOH 26 179 26 HOH HOH A . E 4 HOH 27 180 27 HOH HOH A . E 4 HOH 28 181 28 HOH HOH A . E 4 HOH 29 182 30 HOH HOH A . E 4 HOH 30 183 31 HOH HOH A . E 4 HOH 31 184 32 HOH HOH A . E 4 HOH 32 185 33 HOH HOH A . E 4 HOH 33 186 34 HOH HOH A . E 4 HOH 34 187 35 HOH HOH A . E 4 HOH 35 188 36 HOH HOH A . E 4 HOH 36 189 37 HOH HOH A . E 4 HOH 37 190 38 HOH HOH A . E 4 HOH 38 191 39 HOH HOH A . E 4 HOH 39 192 40 HOH HOH A . E 4 HOH 40 193 41 HOH HOH A . E 4 HOH 41 194 42 HOH HOH A . E 4 HOH 42 195 43 HOH HOH A . E 4 HOH 43 196 44 HOH HOH A . E 4 HOH 44 197 45 HOH HOH A . E 4 HOH 45 198 46 HOH HOH A . E 4 HOH 46 199 47 HOH HOH A . E 4 HOH 47 203 48 HOH HOH A . E 4 HOH 48 204 49 HOH HOH A . E 4 HOH 49 205 50 HOH HOH A . E 4 HOH 50 206 51 HOH HOH A . E 4 HOH 51 207 52 HOH HOH A . E 4 HOH 52 208 53 HOH HOH A . E 4 HOH 53 209 54 HOH HOH A . E 4 HOH 54 210 55 HOH HOH A . E 4 HOH 55 211 56 HOH HOH A . E 4 HOH 56 212 57 HOH HOH A . E 4 HOH 57 213 58 HOH HOH A . E 4 HOH 58 214 59 HOH HOH A . E 4 HOH 59 215 60 HOH HOH A . E 4 HOH 60 216 61 HOH HOH A . E 4 HOH 61 217 62 HOH HOH A . E 4 HOH 62 218 63 HOH HOH A . E 4 HOH 63 219 64 HOH HOH A . E 4 HOH 64 220 65 HOH HOH A . E 4 HOH 65 221 66 HOH HOH A . E 4 HOH 66 222 67 HOH HOH A . E 4 HOH 67 223 68 HOH HOH A . E 4 HOH 68 224 69 HOH HOH A . E 4 HOH 69 225 70 HOH HOH A . E 4 HOH 70 226 71 HOH HOH A . E 4 HOH 71 227 72 HOH HOH A . E 4 HOH 72 228 74 HOH HOH A . E 4 HOH 73 229 75 HOH HOH A . E 4 HOH 74 230 76 HOH HOH A . E 4 HOH 75 231 77 HOH HOH A . E 4 HOH 76 232 78 HOH HOH A . E 4 HOH 77 233 79 HOH HOH A . E 4 HOH 78 234 80 HOH HOH A . E 4 HOH 79 235 81 HOH HOH A . E 4 HOH 80 236 82 HOH HOH A . E 4 HOH 81 237 83 HOH HOH A . E 4 HOH 82 238 84 HOH HOH A . E 4 HOH 83 239 85 HOH HOH A . E 4 HOH 84 240 86 HOH HOH A . E 4 HOH 85 241 87 HOH HOH A . E 4 HOH 86 242 88 HOH HOH A . E 4 HOH 87 243 89 HOH HOH A . E 4 HOH 88 244 90 HOH HOH A . E 4 HOH 89 245 91 HOH HOH A . E 4 HOH 90 246 92 HOH HOH A . E 4 HOH 91 247 93 HOH HOH A . E 4 HOH 92 248 94 HOH HOH A . E 4 HOH 93 249 95 HOH HOH A . E 4 HOH 94 250 96 HOH HOH A . E 4 HOH 95 251 98 HOH HOH A . E 4 HOH 96 252 99 HOH HOH A . E 4 HOH 97 253 100 HOH HOH A . E 4 HOH 98 254 101 HOH HOH A . E 4 HOH 99 255 102 HOH HOH A . E 4 HOH 100 256 103 HOH HOH A . E 4 HOH 101 257 104 HOH HOH A . E 4 HOH 102 258 105 HOH HOH A . E 4 HOH 103 259 106 HOH HOH A . E 4 HOH 104 260 107 HOH HOH A . E 4 HOH 105 261 108 HOH HOH A . E 4 HOH 106 262 109 HOH HOH A . E 4 HOH 107 263 110 HOH HOH A . E 4 HOH 108 264 111 HOH HOH A . E 4 HOH 109 265 113 HOH HOH A . E 4 HOH 110 266 114 HOH HOH A . E 4 HOH 111 267 115 HOH HOH A . E 4 HOH 112 268 116 HOH HOH A . E 4 HOH 113 269 117 HOH HOH A . E 4 HOH 114 270 118 HOH HOH A . E 4 HOH 115 271 119 HOH HOH A . E 4 HOH 116 272 120 HOH HOH A . E 4 HOH 117 273 121 HOH HOH A . #