HEADER TRANSFERASE 01-DEC-11 3UWD TITLE CRYSTAL STRUCTURE OF PHOSPHOGLYCERATE KINASE FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.2.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 1392; SOURCE 5 STRAIN: STERNE; SOURCE 6 GENE: BAS4988, BA_5367, GBAA_5367, PGK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ANTHRAX, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 2 INFECTIOUS DISEASES, CSGID, ROSSMANN FOLD, PHOSPHOGLYCERATE KINASE, KEYWDS 3 PHOSPHOGLYCERATE, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHENG,M.CHRUSZCZ,P.POREBSKI,M.KUDRITSKA,S.GRIMSHAW,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,W.MINOR,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS AUTHOR 3 DISEASES (CSGID) REVDAT 4 30-OCT-24 3UWD 1 REMARK REVDAT 3 13-APR-22 3UWD 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 23-MAY-12 3UWD 1 JRNL REVDAT 1 11-JAN-12 3UWD 0 SPRSDE 11-JAN-12 3UWD 3B2B JRNL AUTH H.ZHENG,E.V.FILIPPOVA,K.L.TKACZUK,P.DWORZYNSKI,M.CHRUSZCZ, JRNL AUTH 2 P.J.POREBSKI,Z.WAWRZAK,O.ONOPRIYENKO,M.KUDRITSKA,S.GRIMSHAW, JRNL AUTH 3 A.SAVCHENKO,W.F.ANDERSON,W.MINOR JRNL TITL CRYSTAL STRUCTURES OF PUTATIVE PHOSPHOGLYCERATE KINASES FROM JRNL TITL 2 B. ANTHRACIS AND C. JEJUNI. JRNL REF J.STRUCT.FUNCT.GENOM. V. 13 15 2012 JRNL REFN ISSN 1345-711X JRNL PMID 22403005 JRNL DOI 10.1007/S10969-012-9131-9 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 35939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3136 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2125 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4262 ; 1.591 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5246 ; 2.273 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 6.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;38.518 ;25.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;12.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.215 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3545 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 589 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8950 25.8220 20.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.2457 REMARK 3 T33: 0.1943 T12: 0.1098 REMARK 3 T13: -0.0599 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 6.4287 L22: 4.0939 REMARK 3 L33: 3.3287 L12: -0.9620 REMARK 3 L13: 1.9100 L23: -0.9108 REMARK 3 S TENSOR REMARK 3 S11: -0.2485 S12: -0.8994 S13: 0.2648 REMARK 3 S21: 0.4357 S22: 0.1475 S23: -0.1797 REMARK 3 S31: -0.0992 S32: 0.0187 S33: 0.1010 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1670 26.1260 10.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.1460 REMARK 3 T33: 0.2294 T12: 0.0586 REMARK 3 T13: -0.0313 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 6.7048 L22: 1.0173 REMARK 3 L33: 1.3402 L12: -2.3718 REMARK 3 L13: 1.2389 L23: -0.7334 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.2599 S13: 0.4427 REMARK 3 S21: -0.0562 S22: -0.0856 S23: -0.1200 REMARK 3 S31: 0.1297 S32: 0.2774 S33: 0.1155 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 173 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9490 34.3930 10.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0333 REMARK 3 T33: 0.0995 T12: -0.0035 REMARK 3 T13: 0.0081 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.9361 L22: 1.7091 REMARK 3 L33: 1.4557 L12: -0.0708 REMARK 3 L13: 0.2105 L23: -0.0698 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: -0.0533 S13: -0.3095 REMARK 3 S21: -0.0429 S22: 0.1119 S23: -0.0238 REMARK 3 S31: 0.0849 S32: -0.0269 S33: -0.1645 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6180 49.9210 9.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.1268 T22: 0.0829 REMARK 3 T33: 0.0356 T12: 0.0403 REMARK 3 T13: 0.0447 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.9761 L22: 3.3342 REMARK 3 L33: 1.6331 L12: 0.7343 REMARK 3 L13: 0.5481 L23: 0.7846 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0537 S13: -0.0667 REMARK 3 S21: -0.1912 S22: 0.0927 S23: 0.0671 REMARK 3 S31: -0.2670 S32: -0.2307 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0180 43.8290 24.2780 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.1433 REMARK 3 T33: 0.0548 T12: 0.0178 REMARK 3 T13: 0.0350 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 0.5884 L22: 2.1393 REMARK 3 L33: 1.3205 L12: 0.0444 REMARK 3 L13: 0.2369 L23: 0.9522 REMARK 3 S TENSOR REMARK 3 S11: 0.0501 S12: -0.2133 S13: -0.1282 REMARK 3 S21: 0.1403 S22: -0.0025 S23: -0.0238 REMARK 3 S31: -0.0109 S32: -0.1566 S33: -0.0477 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 373 A 394 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0930 29.2240 6.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.1025 REMARK 3 T33: 0.2303 T12: 0.0154 REMARK 3 T13: -0.0567 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 6.8185 L22: 5.8377 REMARK 3 L33: 1.8857 L12: -6.0379 REMARK 3 L13: 0.7285 L23: 0.1528 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: 0.1645 S13: -0.1070 REMARK 3 S21: -0.0525 S22: -0.0356 S23: -0.1076 REMARK 3 S31: 0.1174 S32: 0.1012 S33: -0.1438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41594 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 24.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : 0.39800 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 SHELXC/D/E, MLPHARE, DM, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M NACL, 0.1M BIS REMARK 280 -TRIS, 2% HEXANDIOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.84350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.84350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 395 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 27 REMARK 465 GLU A 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 90.02 -161.98 REMARK 500 ASN A 116 109.72 -28.46 REMARK 500 ALA A 157 -50.73 -153.44 REMARK 500 ASN A 184 51.70 -148.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 400 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 403 O REMARK 620 2 HOH A 404 O 178.0 REMARK 620 3 HOH A 405 O 94.4 86.7 REMARK 620 4 HOH A 406 O 86.1 92.8 179.5 REMARK 620 5 HOH A 407 O 87.7 90.6 90.3 89.5 REMARK 620 6 HOH A 408 O 92.3 89.4 90.7 89.5 179.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP04624 RELATED DB: TARGETDB DBREF 3UWD A 1 394 UNP Q81X75 PGK_BACAN 1 394 SEQADV 3UWD ALA A 190 UNP Q81X75 THR 190 ENGINEERED MUTATION SEQRES 1 A 394 MSE ASN LYS LYS SER ILE ARG ASP VAL ASP LEU LYS GLY SEQRES 2 A 394 LYS ARG VAL PHE CYS ARG VAL ASP PHE ASN VAL PRO MSE SEQRES 3 A 394 LYS GLU GLY LYS ILE THR ASP GLU THR ARG ILE ARG ALA SEQRES 4 A 394 ALA LEU PRO THR ILE GLN TYR LEU VAL GLU GLN GLY ALA SEQRES 5 A 394 LYS VAL ILE LEU ALA SER HIS LEU GLY ARG PRO LYS GLY SEQRES 6 A 394 GLN ALA VAL GLU GLU LEU ARG LEU THR PRO VAL ALA ALA SEQRES 7 A 394 ARG LEU GLY GLU LEU LEU GLY LYS ASP VAL LYS LYS ALA SEQRES 8 A 394 ASP GLU ALA PHE GLY PRO VAL ALA GLN GLU MSE VAL ALA SEQRES 9 A 394 ALA MSE ASN GLU GLY ASP VAL LEU VAL LEU GLU ASN VAL SEQRES 10 A 394 ARG PHE TYR ALA GLY GLU GLU LYS ASN ASP ALA GLU LEU SEQRES 11 A 394 ALA LYS GLU PHE ALA ALA LEU ALA ASP ILE PHE VAL ASN SEQRES 12 A 394 ASP ALA PHE GLY ALA ALA HIS ARG ALA HIS ALA SER THR SEQRES 13 A 394 ALA GLY ILE ALA ASP TYR LEU PRO ALA VAL SER GLY LEU SEQRES 14 A 394 LEU MSE GLU LYS GLU LEU GLU VAL LEU GLY LYS ALA LEU SEQRES 15 A 394 SER ASN PRO GLU ARG PRO PHE ALA ALA ILE ILE GLY GLY SEQRES 16 A 394 ALA LYS VAL LYS ASP LYS ILE GLY LEU ILE ARG HIS LEU SEQRES 17 A 394 LEU ASP LYS VAL ASP ASN LEU ILE ILE GLY GLY GLY LEU SEQRES 18 A 394 ALA TYR THR PHE VAL LYS ALA LEU GLY HIS GLU ILE GLY SEQRES 19 A 394 LEU SER LEU CYS GLU ASP ASP LYS ILE GLU LEU ALA LYS SEQRES 20 A 394 GLU PHE MSE GLN LEU ALA LYS GLU LYS GLY VAL ASN PHE SEQRES 21 A 394 TYR MSE PRO VAL ASP VAL VAL ILE THR GLU GLU PHE SER SEQRES 22 A 394 GLU THR ALA THR THR LYS ILE VAL GLY ILE ASP SER ILE SEQRES 23 A 394 PRO SER ASN TRP GLU GLY VAL ASP ILE GLY PRO LYS THR SEQRES 24 A 394 ARG GLU ILE TYR ALA ASP VAL ILE LYS ASN SER LYS LEU SEQRES 25 A 394 VAL VAL TRP ASN GLY PRO MSE GLY VAL PHE GLU MSE THR SEQRES 26 A 394 PRO PHE ALA GLU GLY THR LYS ALA VAL GLY GLN ALA LEU SEQRES 27 A 394 ALA ASP ALA GLU GLY THR TYR SER VAL ILE GLY GLY GLY SEQRES 28 A 394 ASP SER ALA ALA ALA VAL GLU LYS PHE GLY MSE ALA ASP SEQRES 29 A 394 LYS MSE SER HIS ILE SER THR GLY GLY GLY ALA SER LEU SEQRES 30 A 394 GLU PHE MSE GLU GLY LYS GLU LEU PRO GLY VAL VAL CYS SEQRES 31 A 394 LEU ASN ASP LYS MODRES 3UWD MSE A 1 MET SELENOMETHIONINE MODRES 3UWD MSE A 26 MET SELENOMETHIONINE MODRES 3UWD MSE A 102 MET SELENOMETHIONINE MODRES 3UWD MSE A 106 MET SELENOMETHIONINE MODRES 3UWD MSE A 171 MET SELENOMETHIONINE MODRES 3UWD MSE A 250 MET SELENOMETHIONINE MODRES 3UWD MSE A 262 MET SELENOMETHIONINE MODRES 3UWD MSE A 319 MET SELENOMETHIONINE MODRES 3UWD MSE A 324 MET SELENOMETHIONINE MODRES 3UWD MSE A 362 MET SELENOMETHIONINE MODRES 3UWD MSE A 366 MET SELENOMETHIONINE MODRES 3UWD MSE A 380 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 26 8 HET MSE A 102 8 HET MSE A 106 8 HET MSE A 171 16 HET MSE A 250 8 HET MSE A 262 8 HET MSE A 319 8 HET MSE A 324 8 HET MSE A 362 8 HET MSE A 366 8 HET MSE A 380 8 HET CL A 395 1 HET CL A 396 1 HET CL A 397 1 HET CL A 398 1 HET CL A 399 1 HET MG A 400 1 HET BTB A 401 14 HET UNL A 402 8 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM UNL UNKNOWN LIGAND HETSYN BTB BIS-TRIS BUFFER FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 CL 5(CL 1-) FORMUL 7 MG MG 2+ FORMUL 8 BTB C8 H19 N O5 FORMUL 10 HOH *335(H2 O) HELIX 1 1 SER A 5 VAL A 9 5 5 HELIX 2 2 GLU A 34 ALA A 40 1 7 HELIX 3 3 ALA A 40 GLN A 50 1 11 HELIX 4 4 VAL A 68 ARG A 72 5 5 HELIX 5 5 LEU A 73 GLY A 85 1 13 HELIX 6 6 GLY A 96 ALA A 105 1 10 HELIX 7 7 ASN A 116 PHE A 119 5 4 HELIX 8 8 TYR A 120 ASN A 126 1 7 HELIX 9 9 ASP A 127 ALA A 136 1 10 HELIX 10 10 ALA A 145 ALA A 149 5 5 HELIX 11 11 ALA A 157 TYR A 162 5 6 HELIX 12 12 GLY A 168 ASN A 184 1 17 HELIX 13 13 LYS A 197 LEU A 209 1 13 HELIX 14 14 LEU A 221 LEU A 229 1 9 HELIX 15 15 GLU A 239 ASP A 241 5 3 HELIX 16 16 LYS A 242 GLY A 257 1 16 HELIX 17 17 ASP A 284 ILE A 286 5 3 HELIX 18 18 GLY A 296 ASN A 309 1 14 HELIX 19 19 MSE A 324 PHE A 327 5 4 HELIX 20 20 ALA A 328 ALA A 341 1 14 HELIX 21 21 GLY A 350 PHE A 360 1 11 HELIX 22 22 MSE A 362 MSE A 366 5 5 HELIX 23 23 GLY A 373 GLU A 381 1 9 HELIX 24 24 LEU A 385 CYS A 390 1 6 SHEET 1 A 6 LYS A 89 LYS A 90 0 SHEET 2 A 6 VAL A 111 VAL A 113 1 O VAL A 113 N LYS A 89 SHEET 3 A 6 LYS A 53 ALA A 57 1 N LEU A 56 O LEU A 112 SHEET 4 A 6 ARG A 15 ARG A 19 1 N CYS A 18 O ILE A 55 SHEET 5 A 6 ILE A 140 ASN A 143 1 O VAL A 142 N PHE A 17 SHEET 6 A 6 ALA A 165 SER A 167 1 O VAL A 166 N ASN A 143 SHEET 1 B 6 ASN A 259 TYR A 261 0 SHEET 2 B 6 ASN A 214 ILE A 217 1 N LEU A 215 O TYR A 261 SHEET 3 B 6 PHE A 189 ILE A 193 1 N ALA A 191 O ILE A 216 SHEET 4 B 6 LEU A 312 ASN A 316 1 O ASN A 316 N ILE A 192 SHEET 5 B 6 TYR A 345 ILE A 348 1 O VAL A 347 N TRP A 315 SHEET 6 B 6 HIS A 368 ILE A 369 1 O HIS A 368 N ILE A 348 SHEET 1 C 3 THR A 278 GLY A 282 0 SHEET 2 C 3 ASP A 265 THR A 269 -1 N VAL A 266 O VAL A 281 SHEET 3 C 3 GLU A 291 ILE A 295 -1 O VAL A 293 N VAL A 267 LINK C MSE A 1 N ASN A 2 1555 1555 1.34 LINK C PRO A 25 N MSE A 26 1555 1555 1.33 LINK C GLU A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N VAL A 103 1555 1555 1.34 LINK C ALA A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N ASN A 107 1555 1555 1.33 LINK C LEU A 170 N AMSE A 171 1555 1555 1.33 LINK C LEU A 170 N BMSE A 171 1555 1555 1.33 LINK C AMSE A 171 N GLU A 172 1555 1555 1.33 LINK C BMSE A 171 N GLU A 172 1555 1555 1.33 LINK C PHE A 249 N MSE A 250 1555 1555 1.33 LINK C MSE A 250 N GLN A 251 1555 1555 1.34 LINK C TYR A 261 N MSE A 262 1555 1555 1.34 LINK C MSE A 262 N PRO A 263 1555 1555 1.32 LINK C PRO A 318 N MSE A 319 1555 1555 1.34 LINK C MSE A 319 N GLY A 320 1555 1555 1.32 LINK C GLU A 323 N MSE A 324 1555 1555 1.33 LINK C MSE A 324 N THR A 325 1555 1555 1.32 LINK C GLY A 361 N MSE A 362 1555 1555 1.34 LINK C MSE A 362 N ALA A 363 1555 1555 1.33 LINK C LYS A 365 N MSE A 366 1555 1555 1.33 LINK C MSE A 366 N SER A 367 1555 1555 1.34 LINK C PHE A 379 N MSE A 380 1555 1555 1.34 LINK C MSE A 380 N GLU A 381 1555 1555 1.33 LINK MG MG A 400 O HOH A 403 1555 1555 2.19 LINK MG MG A 400 O HOH A 404 1555 1555 2.18 LINK MG MG A 400 O HOH A 405 1555 1555 2.16 LINK MG MG A 400 O HOH A 406 1555 1555 2.17 LINK MG MG A 400 O HOH A 407 1555 1555 2.16 LINK MG MG A 400 O HOH A 408 1555 1555 2.17 CISPEP 1 ARG A 187 PRO A 188 0 6.90 SITE 1 AC1 2 ARG A 206 PHE A 249 SITE 1 AC2 4 GLY A 195 ALA A 196 GLY A 220 HOH A 512 SITE 1 AC3 3 LYS A 256 LYS A 383 GLU A 384 SITE 1 AC4 5 GLY A 317 GLY A 350 ASP A 352 SER A 353 SITE 2 AC4 5 HOH A 678 SITE 1 AC5 5 LYS A 180 GLU A 186 LEU A 312 HOH A 446 SITE 2 AC5 5 HOH A 449 SITE 1 AC6 6 HOH A 403 HOH A 404 HOH A 405 HOH A 406 SITE 2 AC6 6 HOH A 407 HOH A 408 SITE 1 AC7 11 ARG A 187 ASP A 210 LYS A 211 VAL A 212 SITE 2 AC7 11 ASP A 213 LYS A 256 GLU A 384 HOH A 523 SITE 3 AC7 11 HOH A 562 HOH A 567 HOH A 712 CRYST1 119.687 45.334 68.607 90.00 97.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008355 0.000000 0.001167 0.00000 SCALE2 0.000000 0.022058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014717 0.00000 HETATM 1 N MSE A 1 7.020 21.035 3.760 1.00 46.91 N ANISOU 1 N MSE A 1 4462 4806 8557 -377 -3207 416 N HETATM 2 CA MSE A 1 8.450 20.958 4.236 1.00 44.22 C ANISOU 2 CA MSE A 1 4371 4493 7938 -275 -2898 320 C HETATM 3 C MSE A 1 8.632 19.878 5.270 1.00 42.92 C ANISOU 3 C MSE A 1 4119 4228 7960 -370 -2749 380 C HETATM 4 O MSE A 1 7.781 19.694 6.141 1.00 43.82 O ANISOU 4 O MSE A 1 3910 4360 8381 -461 -2674 582 O HETATM 5 CB MSE A 1 8.891 22.292 4.839 1.00 43.37 C ANISOU 5 CB MSE A 1 4225 4555 7700 -110 -2588 395 C HETATM 6 CG MSE A 1 10.280 22.246 5.461 1.00 41.66 C ANISOU 6 CG MSE A 1 4199 4374 7255 -23 -2287 322 C HETATM 7 SE MSE A 1 10.678 23.943 6.415 1.00 42.84 SE ANISOU 7 SE MSE A 1 4248 4689 7341 162 -1952 394 SE HETATM 8 CE MSE A 1 8.965 23.973 7.411 1.00 41.99 C ANISOU 8 CE MSE A 1 3668 4645 7642 126 -1922 573 C