HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-DEC-11 3UWK TITLE STRUCTURE GUIDED DEVELOPMENT OF NOVEL THYMIDINE MIMETICS TARGETING TITLE 2 PSEUDOMONAS AERUGINOSA THYMIDYLATE KINASE: FROM HIT TO LEAD TITLE 3 GENERATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: PA2962, TMK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS THYMIDYLATE KINASE, KINASE, THYMIDINE TRIPHOSPHATE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.CHOI,M.S.PLUMMER,J.STARR,C.R.DESBONNET,H.H.SOUTTER,J.CHANG, AUTHOR 2 J.R.MILLER,K.DILLMAN,A.A.MILLER,W.R.ROUSH REVDAT 3 28-FEB-24 3UWK 1 REMARK SEQADV REVDAT 2 14-NOV-12 3UWK 1 JRNL REVDAT 1 01-FEB-12 3UWK 0 JRNL AUTH J.Y.CHOI,M.S.PLUMMER,J.STARR,C.R.DESBONNET,H.SOUTTER, JRNL AUTH 2 J.CHANG,J.R.MILLER,K.DILLMAN,A.A.MILLER,W.R.ROUSH JRNL TITL STRUCTURE GUIDED DEVELOPMENT OF NOVEL THYMIDINE MIMETICS JRNL TITL 2 TARGETING PSEUDOMONAS AERUGINOSA THYMIDYLATE KINASE: FROM JRNL TITL 3 HIT TO LEAD GENERATION. JRNL REF J.MED.CHEM. V. 55 852 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22243413 JRNL DOI 10.1021/JM201349F REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1489 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1933 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.501 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3167 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4293 ; 1.742 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 395 ;21.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;34.008 ;22.564 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;16.157 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;23.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 477 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2474 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1412 ; 0.240 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2167 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 152 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 108 ; 0.279 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2035 ; 2.077 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3141 ; 2.980 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1270 ; 4.655 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1152 ; 6.707 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 62.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS MIXED 1:1 WITH A REMARK 280 RESERVOIR SOLUTION CONTAINING 30% PEG 4000, 0.2M MGCL2, AND 0.1 REMARK 280 M TRIS PH 7.5 - 8.5 AND INCUBATED AT 295, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.17050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.03150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.17050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.03150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 256 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 150 REMARK 465 ARG A 151 REMARK 465 LEU A 152 REMARK 465 LEU A 208 REMARK 465 ASN A 209 REMARK 465 GLY A 210 REMARK 465 GLY A 211 REMARK 465 SER A 212 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 LEU B 143 REMARK 465 ALA B 144 REMARK 465 ARG B 145 REMARK 465 ALA B 146 REMARK 465 ALA B 147 REMARK 465 ALA B 148 REMARK 465 ARG B 149 REMARK 465 GLY B 150 REMARK 465 ARG B 151 REMARK 465 LEU B 152 REMARK 465 ASN B 209 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 SER B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 111 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 81 -53.18 -137.31 REMARK 500 ARG A 96 140.56 69.58 REMARK 500 PHE A 97 -145.71 -152.14 REMARK 500 VAL B 81 -52.89 -128.13 REMARK 500 ARG B 96 139.64 71.22 REMARK 500 PHE B 97 -148.46 -156.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 31 ILE A 32 -130.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0DF A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0DF B 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UWO RELATED DB: PDB REMARK 900 RELATED ID: 3UXM RELATED DB: PDB DBREF 3UWK A 1 210 UNP Q9HZN8 KTHY_PSEAE 1 210 DBREF 3UWK B 1 210 UNP Q9HZN8 KTHY_PSEAE 1 210 SEQADV 3UWK MET A -19 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY A -18 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER A -17 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER A -16 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS A -15 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS A -14 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS A -13 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS A -12 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS A -11 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS A -10 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER A -9 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER A -8 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY A -7 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK LEU A -6 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK VAL A -5 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK PRO A -4 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK ARG A -3 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY A -2 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER A -1 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS A 0 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY A 211 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER A 212 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK MET B -19 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY B -18 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER B -17 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER B -16 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS B -15 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS B -14 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS B -13 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS B -12 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS B -11 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS B -10 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER B -9 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER B -8 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY B -7 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK LEU B -6 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK VAL B -5 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK PRO B -4 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK ARG B -3 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY B -2 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER B -1 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK HIS B 0 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK GLY B 211 UNP Q9HZN8 EXPRESSION TAG SEQADV 3UWK SER B 212 UNP Q9HZN8 EXPRESSION TAG SEQRES 1 A 232 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 232 LEU VAL PRO ARG GLY SER HIS MET THR GLY LEU PHE VAL SEQRES 3 A 232 THR LEU GLU GLY PRO GLU GLY ALA GLY LYS SER THR ASN SEQRES 4 A 232 ARG ASP TYR LEU ALA GLU ARG LEU ARG GLU ARG GLY ILE SEQRES 5 A 232 GLU VAL GLN LEU THR ARG GLU PRO GLY GLY THR PRO LEU SEQRES 6 A 232 ALA GLU ARG ILE ARG GLU LEU LEU LEU ALA PRO SER ASP SEQRES 7 A 232 GLU PRO MET ALA ALA ASP THR GLU LEU LEU LEU MET PHE SEQRES 8 A 232 ALA ALA ARG ALA GLN HIS LEU ALA GLY VAL ILE ARG PRO SEQRES 9 A 232 ALA LEU ALA ARG GLY ALA VAL VAL LEU CYS ASP ARG PHE SEQRES 10 A 232 THR ASP ALA THR TYR ALA TYR GLN GLY GLY GLY ARG GLY SEQRES 11 A 232 LEU PRO GLU ALA ARG ILE ALA ALA LEU GLU SER PHE VAL SEQRES 12 A 232 GLN GLY ASP LEU ARG PRO ASP LEU THR LEU VAL PHE ASP SEQRES 13 A 232 LEU PRO VAL GLU ILE GLY LEU ALA ARG ALA ALA ALA ARG SEQRES 14 A 232 GLY ARG LEU ASP ARG PHE GLU GLN GLU ASP ARG ARG PHE SEQRES 15 A 232 PHE GLU ALA VAL ARG GLN THR TYR LEU GLN ARG ALA ALA SEQRES 16 A 232 GLN ALA PRO GLU ARG TYR GLN VAL LEU ASP ALA GLY LEU SEQRES 17 A 232 PRO LEU ALA GLU VAL GLN ALA GLY LEU ASP ARG LEU LEU SEQRES 18 A 232 PRO ASN LEU LEU GLU ARG LEU ASN GLY GLY SER SEQRES 1 B 232 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 232 LEU VAL PRO ARG GLY SER HIS MET THR GLY LEU PHE VAL SEQRES 3 B 232 THR LEU GLU GLY PRO GLU GLY ALA GLY LYS SER THR ASN SEQRES 4 B 232 ARG ASP TYR LEU ALA GLU ARG LEU ARG GLU ARG GLY ILE SEQRES 5 B 232 GLU VAL GLN LEU THR ARG GLU PRO GLY GLY THR PRO LEU SEQRES 6 B 232 ALA GLU ARG ILE ARG GLU LEU LEU LEU ALA PRO SER ASP SEQRES 7 B 232 GLU PRO MET ALA ALA ASP THR GLU LEU LEU LEU MET PHE SEQRES 8 B 232 ALA ALA ARG ALA GLN HIS LEU ALA GLY VAL ILE ARG PRO SEQRES 9 B 232 ALA LEU ALA ARG GLY ALA VAL VAL LEU CYS ASP ARG PHE SEQRES 10 B 232 THR ASP ALA THR TYR ALA TYR GLN GLY GLY GLY ARG GLY SEQRES 11 B 232 LEU PRO GLU ALA ARG ILE ALA ALA LEU GLU SER PHE VAL SEQRES 12 B 232 GLN GLY ASP LEU ARG PRO ASP LEU THR LEU VAL PHE ASP SEQRES 13 B 232 LEU PRO VAL GLU ILE GLY LEU ALA ARG ALA ALA ALA ARG SEQRES 14 B 232 GLY ARG LEU ASP ARG PHE GLU GLN GLU ASP ARG ARG PHE SEQRES 15 B 232 PHE GLU ALA VAL ARG GLN THR TYR LEU GLN ARG ALA ALA SEQRES 16 B 232 GLN ALA PRO GLU ARG TYR GLN VAL LEU ASP ALA GLY LEU SEQRES 17 B 232 PRO LEU ALA GLU VAL GLN ALA GLY LEU ASP ARG LEU LEU SEQRES 18 B 232 PRO ASN LEU LEU GLU ARG LEU ASN GLY GLY SER HET 0DF A 800 17 HET MG A 213 1 HET 0DF B 801 17 HETNAM 0DF 1-METHYL-6-PHENYL-1,3-DIHYDRO-2H-IMIDAZO[4,5-B]PYRIDIN- HETNAM 2 0DF 2-ONE HETNAM MG MAGNESIUM ION FORMUL 3 0DF 2(C13 H11 N3 O) FORMUL 4 MG MG 2+ FORMUL 6 HOH *99(H2 O) HELIX 1 1 PRO A 11 ALA A 14 5 4 HELIX 2 2 GLY A 15 GLU A 29 1 15 HELIX 3 3 THR A 43 ALA A 55 1 13 HELIX 4 4 ALA A 62 VAL A 81 1 20 HELIX 5 5 VAL A 81 ARG A 88 1 8 HELIX 6 6 PHE A 97 GLN A 105 1 9 HELIX 7 7 PRO A 112 GLY A 125 1 14 HELIX 8 8 PRO A 138 ARG A 149 1 12 HELIX 9 9 ASP A 159 ALA A 177 1 19 HELIX 10 10 PRO A 189 ARG A 207 1 19 HELIX 11 11 GLY B 15 GLU B 29 1 15 HELIX 12 12 THR B 43 ALA B 55 1 13 HELIX 13 13 ALA B 62 VAL B 81 1 20 HELIX 14 14 VAL B 81 ARG B 88 1 8 HELIX 15 15 PHE B 97 GLN B 105 1 9 HELIX 16 16 PRO B 112 GLY B 125 1 14 HELIX 17 17 ASP B 159 ALA B 177 1 19 HELIX 18 18 PRO B 189 ARG B 199 1 11 HELIX 19 19 LEU B 200 LEU B 208 1 9 SHEET 1 A 5 VAL A 34 ARG A 38 0 SHEET 2 A 5 VAL A 91 ASP A 95 1 O VAL A 91 N GLN A 35 SHEET 3 A 5 LEU A 4 GLU A 9 1 N LEU A 4 O VAL A 92 SHEET 4 A 5 LEU A 131 ASP A 136 1 O LEU A 133 N THR A 7 SHEET 5 A 5 TYR A 181 ASP A 185 1 O LEU A 184 N VAL A 134 SHEET 1 B 5 VAL B 34 ARG B 38 0 SHEET 2 B 5 VAL B 91 ASP B 95 1 O LEU B 93 N GLN B 35 SHEET 3 B 5 LEU B 4 GLU B 9 1 N LEU B 4 O VAL B 92 SHEET 4 B 5 LEU B 131 ASP B 136 1 O PHE B 135 N GLU B 9 SHEET 5 B 5 TYR B 181 ASP B 185 1 O LEU B 184 N VAL B 134 CISPEP 1 GLU A 39 PRO A 40 0 -4.65 CISPEP 2 GLU B 39 PRO B 40 0 -9.29 SITE 1 AC1 10 GLU A 12 GLU A 39 PRO A 40 MET A 70 SITE 2 AC1 10 ARG A 74 ARG A 96 ALA A 100 THR A 101 SITE 3 AC1 10 TYR A 104 GLN A 105 SITE 1 AC2 4 GLU A 158 ASP A 159 GLU B 158 ASP B 159 SITE 1 AC3 11 GLU B 39 PRO B 40 MET B 70 ARG B 74 SITE 2 AC3 11 ARG B 96 PHE B 97 ALA B 100 THR B 101 SITE 3 AC3 11 TYR B 104 GLN B 105 ASP B 153 CRYST1 74.341 118.063 41.918 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013452 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023856 0.00000