HEADER TRANSPORT PROTEIN 03-DEC-11 3UX4 TITLE CRYSTAL STRUCTURE OF THE UREA CHANNEL FROM THE HUMAN GASTRIC PATHOGEN TITLE 2 HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACID-ACTIVATED UREA CHANNEL; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: UREASE ACCESSORY PROTEIN UREI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85963; SOURCE 4 STRAIN: J99; SOURCE 5 GENE: JHP_0066, UREI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET100D KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MCNULTY,H.LUECKE REVDAT 4 28-FEB-24 3UX4 1 REMARK SEQADV REVDAT 3 06-MAR-13 3UX4 1 SEQADV SEQRES REVDAT 2 16-JAN-13 3UX4 1 JRNL REVDAT 1 19-DEC-12 3UX4 0 JRNL AUTH D.STRUGATSKY,R.MCNULTY,K.MUNSON,C.K.CHEN,S.M.SOLTIS,G.SACHS, JRNL AUTH 2 H.LUECKE JRNL TITL STRUCTURE OF THE PROTON-GATED UREA CHANNEL FROM THE GASTRIC JRNL TITL 2 PATHOGEN HELICOBACTER PYLORI. JRNL REF NATURE V. 493 2 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23222544 JRNL DOI 10.1038/NATURE11684 REMARK 2 REMARK 2 RESOLUTION. 3.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 872 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4284 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 198 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 164.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.524 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.853 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 129.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4629 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6312 ; 1.468 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 7.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;37.296 ;22.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;18.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;19.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 711 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3333 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4629 ;11.159 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4482 ; NULL ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 1 NULL (A**2): 240 ; 46.90 ; 0.71 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 2 NULL (A**2): 240 ; 47.68 ; 0.71 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : NULL REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT THERMAL 3 NULL (A**2): 240 ; 49.68 ; 0.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4840 33.4840 -0.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.5802 T22: 0.2415 REMARK 3 T33: 1.1832 T12: 0.1001 REMARK 3 T13: -0.0278 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 0.3291 L22: 3.3348 REMARK 3 L33: 3.0914 L12: 0.7317 REMARK 3 L13: -0.3229 L23: -0.1431 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0465 S13: 0.2874 REMARK 3 S21: -0.1332 S22: -0.0524 S23: -0.4537 REMARK 3 S31: -1.0276 S32: -0.2211 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 147 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9940 36.6300 2.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.7811 T22: 0.0827 REMARK 3 T33: 1.6331 T12: -0.1817 REMARK 3 T13: 0.2960 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 2.5172 L22: 8.5839 REMARK 3 L33: 3.6069 L12: -2.1856 REMARK 3 L13: 2.3150 L23: 0.9308 REMARK 3 S TENSOR REMARK 3 S11: -0.2265 S12: 0.0484 S13: 1.1433 REMARK 3 S21: -0.5728 S22: 0.0051 S23: -2.1432 REMARK 3 S31: -0.8144 S32: 0.0795 S33: 0.2215 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -7.4010 25.6240 20.2500 REMARK 3 T TENSOR REMARK 3 T11: 0.8337 T22: 0.6958 REMARK 3 T33: 0.4654 T12: 0.3188 REMARK 3 T13: -0.1487 T23: -0.3920 REMARK 3 L TENSOR REMARK 3 L11: 1.4295 L22: 3.7978 REMARK 3 L33: 2.5933 L12: 0.3782 REMARK 3 L13: -1.4301 L23: 1.1869 REMARK 3 S TENSOR REMARK 3 S11: 0.1172 S12: -0.4219 S13: 0.7203 REMARK 3 S21: 0.9067 S22: 0.3675 S23: 0.2270 REMARK 3 S31: -0.1468 S32: 0.1618 S33: -0.4847 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 195 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8080 23.8360 29.0410 REMARK 3 T TENSOR REMARK 3 T11: 1.2441 T22: 0.9856 REMARK 3 T33: 1.0429 T12: 0.1475 REMARK 3 T13: 0.0664 T23: -0.8795 REMARK 3 L TENSOR REMARK 3 L11: 3.0871 L22: 11.8569 REMARK 3 L33: 2.3724 L12: -5.1854 REMARK 3 L13: -0.7838 L23: -0.7512 REMARK 3 S TENSOR REMARK 3 S11: -0.1669 S12: -0.8311 S13: 1.2039 REMARK 3 S21: 1.7136 S22: 0.8069 S23: -1.0380 REMARK 3 S31: -0.9516 S32: 0.1852 S33: -0.6400 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 146 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5990 24.4300 -21.2260 REMARK 3 T TENSOR REMARK 3 T11: 1.1629 T22: 0.6847 REMARK 3 T33: 0.5194 T12: 0.3725 REMARK 3 T13: 0.0435 T23: 0.2677 REMARK 3 L TENSOR REMARK 3 L11: 2.1181 L22: 1.4078 REMARK 3 L33: 2.7387 L12: -0.2244 REMARK 3 L13: 1.9594 L23: -1.0736 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: 0.3354 S13: 0.7384 REMARK 3 S21: -0.7942 S22: -0.3108 S23: 0.3279 REMARK 3 S31: 0.0414 S32: 0.2849 S33: 0.2361 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 147 C 195 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9820 26.6850 -26.7300 REMARK 3 T TENSOR REMARK 3 T11: 1.2994 T22: 0.8853 REMARK 3 T33: 1.3598 T12: 0.0970 REMARK 3 T13: -0.1576 T23: 0.6148 REMARK 3 L TENSOR REMARK 3 L11: 4.0619 L22: 7.3248 REMARK 3 L33: 1.4316 L12: -4.5230 REMARK 3 L13: 2.3113 L23: -2.6619 REMARK 3 S TENSOR REMARK 3 S11: 0.1974 S12: 1.2397 S13: 0.5292 REMARK 3 S21: -0.7531 S22: -0.5618 S23: 0.9693 REMARK 3 S31: -0.0244 S32: 0.5463 S33: 0.3644 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3UX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : KOHZU HLD8-24 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17263 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.256 REMARK 200 RESOLUTION RANGE LOW (A) : 92.746 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.10800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 1.57 MG/ML UREI PROTEIN, 0.04 M REMARK 280 NACL, 1 MM TLCL, 0.01 M CACL2, 7% PEG400, 0.05% DECYLMALTOSIDE, REMARK 280 2.25% OCTYLGLUCOSIDE, 0.8 MG/ML E. COLI POLAR LIPIDS, 0.035 M REMARK 280 MES, PH5.3, RESERVOIR: 20% PEG400, 0.1 M MES, PH 5.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.45200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.67400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.45200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.67400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.45200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.45200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.67400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.45200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.45200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.67400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 59 REMARK 465 GLU A 60 REMARK 465 GLY A 61 REMARK 465 HIS A 61A REMARK 465 HIS A 61B REMARK 465 HIS A 61C REMARK 465 HIS A 61D REMARK 465 HIS A 61E REMARK 465 HIS A 61F REMARK 465 ALA A 62 REMARK 465 GLU A 63 REMARK 465 ASP A 64 REMARK 465 ILE A 65 REMARK 465 VAL A 66 REMARK 465 GLN A 67 REMARK 465 VAL A 68 REMARK 465 SER A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 LEU A 72 REMARK 465 THR A 73 REMARK 465 VAL B 59 REMARK 465 GLU B 60 REMARK 465 GLY B 61 REMARK 465 HIS B 61A REMARK 465 HIS B 61B REMARK 465 HIS B 61C REMARK 465 HIS B 61D REMARK 465 HIS B 61E REMARK 465 HIS B 61F REMARK 465 ALA B 62 REMARK 465 GLU B 63 REMARK 465 ASP B 64 REMARK 465 ILE B 65 REMARK 465 VAL B 66 REMARK 465 GLN B 67 REMARK 465 VAL B 68 REMARK 465 SER B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 LEU B 72 REMARK 465 THR B 73 REMARK 465 VAL C 59 REMARK 465 GLU C 60 REMARK 465 GLY C 61 REMARK 465 HIS C 61A REMARK 465 HIS C 61B REMARK 465 HIS C 61C REMARK 465 HIS C 61D REMARK 465 HIS C 61E REMARK 465 HIS C 61F REMARK 465 ALA C 62 REMARK 465 GLU C 63 REMARK 465 ASP C 64 REMARK 465 ILE C 65 REMARK 465 VAL C 66 REMARK 465 GLN C 67 REMARK 465 VAL C 68 REMARK 465 SER C 69 REMARK 465 HIS C 70 REMARK 465 HIS C 71 REMARK 465 LEU C 72 REMARK 465 THR C 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE C 169 N TRP C 172 2.00 REMARK 500 O SER A 122 OD2 ASP A 140 2.19 REMARK 500 O SER B 122 OD2 ASP B 140 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 25 OD2 ASP C 25 7555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -61.24 -96.05 REMARK 500 THR A 56 15.01 87.04 REMARK 500 VAL A 133 154.31 -47.76 REMARK 500 THR A 137 -120.62 55.66 REMARK 500 GLU A 138 12.12 84.72 REMARK 500 TRP A 141 14.52 -68.52 REMARK 500 TRP A 142 -36.59 -39.93 REMARK 500 HIS A 193 -56.93 74.14 REMARK 500 LEU B 21 -60.94 -98.21 REMARK 500 PRO B 55 7.92 -63.29 REMARK 500 THR B 56 6.73 81.27 REMARK 500 TYR B 76 -32.69 -38.37 REMARK 500 VAL B 133 153.55 -47.39 REMARK 500 THR B 137 -120.56 55.58 REMARK 500 GLU B 138 12.16 84.67 REMARK 500 TRP B 141 13.85 -67.71 REMARK 500 TRP B 142 -36.17 -39.70 REMARK 500 LEU B 162 -56.37 -133.11 REMARK 500 HIS B 193 -56.89 74.44 REMARK 500 LEU C 21 -62.56 -96.42 REMARK 500 PRO C 55 -6.64 -51.64 REMARK 500 THR C 56 -3.56 82.95 REMARK 500 TYR C 76 -31.76 -39.80 REMARK 500 VAL C 133 154.49 -47.53 REMARK 500 THR C 137 -120.89 54.18 REMARK 500 GLU C 138 13.88 80.95 REMARK 500 TRP C 142 -36.30 -39.91 REMARK 500 LEU C 162 -51.78 -131.46 REMARK 500 HIS C 193 -56.93 74.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XP4 A 201 REMARK 610 XP4 A 202 REMARK 610 XP4 B 301 REMARK 610 XP4 B 303 REMARK 610 XP4 B 304 REMARK 610 XP4 B 305 REMARK 610 XP4 C 302 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XP4 C 302 DBREF 3UX4 A 1 195 UNP P56874 UREI_HELPJ 1 195 DBREF 3UX4 B 1 195 UNP P56874 UREI_HELPJ 1 195 DBREF 3UX4 C 1 195 UNP P56874 UREI_HELPJ 1 195 SEQADV 3UX4 HIS A 61A UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS A 61B UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS A 61C UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS A 61D UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS A 61E UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS A 61F UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS B 61A UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS B 61B UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS B 61C UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS B 61D UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS B 61E UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS B 61F UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS C 61A UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS C 61B UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS C 61C UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS C 61D UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS C 61E UNP P56874 EXPRESSION TAG SEQADV 3UX4 HIS C 61F UNP P56874 EXPRESSION TAG SEQRES 1 A 201 MET LEU GLY LEU VAL LEU LEU TYR VAL GLY ILE VAL LEU SEQRES 2 A 201 ILE SER ASN GLY ILE CYS GLY LEU THR LYS VAL ASP PRO SEQRES 3 A 201 LYS SER THR ALA VAL MET ASN PHE PHE VAL GLY GLY LEU SEQRES 4 A 201 SER ILE VAL CYS ASN VAL VAL VAL ILE THR TYR SER ALA SEQRES 5 A 201 LEU HIS PRO THR ALA PRO VAL GLU GLY HIS HIS HIS HIS SEQRES 6 A 201 HIS HIS ALA GLU ASP ILE VAL GLN VAL SER HIS HIS LEU SEQRES 7 A 201 THR SER PHE TYR GLY PRO ALA THR GLY LEU LEU PHE GLY SEQRES 8 A 201 PHE THR TYR LEU TYR ALA ALA ILE ASN HIS THR PHE GLY SEQRES 9 A 201 LEU ASP TRP ARG PRO TYR SER TRP TYR SER LEU PHE VAL SEQRES 10 A 201 ALA ILE ASN THR VAL PRO ALA ALA ILE LEU SER HIS TYR SEQRES 11 A 201 SER ASP MET LEU ASP ASP HIS LYS VAL LEU GLY ILE THR SEQRES 12 A 201 GLU GLY ASP TRP TRP ALA ILE ILE TRP LEU ALA TRP GLY SEQRES 13 A 201 VAL LEU TRP LEU THR ALA PHE ILE GLU ASN ILE LEU LYS SEQRES 14 A 201 ILE PRO LEU GLY LYS PHE THR PRO TRP LEU ALA ILE ILE SEQRES 15 A 201 GLU GLY ILE LEU THR ALA TRP ILE PRO ALA TRP LEU LEU SEQRES 16 A 201 PHE ILE GLN HIS TRP VAL SEQRES 1 B 201 MET LEU GLY LEU VAL LEU LEU TYR VAL GLY ILE VAL LEU SEQRES 2 B 201 ILE SER ASN GLY ILE CYS GLY LEU THR LYS VAL ASP PRO SEQRES 3 B 201 LYS SER THR ALA VAL MET ASN PHE PHE VAL GLY GLY LEU SEQRES 4 B 201 SER ILE VAL CYS ASN VAL VAL VAL ILE THR TYR SER ALA SEQRES 5 B 201 LEU HIS PRO THR ALA PRO VAL GLU GLY HIS HIS HIS HIS SEQRES 6 B 201 HIS HIS ALA GLU ASP ILE VAL GLN VAL SER HIS HIS LEU SEQRES 7 B 201 THR SER PHE TYR GLY PRO ALA THR GLY LEU LEU PHE GLY SEQRES 8 B 201 PHE THR TYR LEU TYR ALA ALA ILE ASN HIS THR PHE GLY SEQRES 9 B 201 LEU ASP TRP ARG PRO TYR SER TRP TYR SER LEU PHE VAL SEQRES 10 B 201 ALA ILE ASN THR VAL PRO ALA ALA ILE LEU SER HIS TYR SEQRES 11 B 201 SER ASP MET LEU ASP ASP HIS LYS VAL LEU GLY ILE THR SEQRES 12 B 201 GLU GLY ASP TRP TRP ALA ILE ILE TRP LEU ALA TRP GLY SEQRES 13 B 201 VAL LEU TRP LEU THR ALA PHE ILE GLU ASN ILE LEU LYS SEQRES 14 B 201 ILE PRO LEU GLY LYS PHE THR PRO TRP LEU ALA ILE ILE SEQRES 15 B 201 GLU GLY ILE LEU THR ALA TRP ILE PRO ALA TRP LEU LEU SEQRES 16 B 201 PHE ILE GLN HIS TRP VAL SEQRES 1 C 201 MET LEU GLY LEU VAL LEU LEU TYR VAL GLY ILE VAL LEU SEQRES 2 C 201 ILE SER ASN GLY ILE CYS GLY LEU THR LYS VAL ASP PRO SEQRES 3 C 201 LYS SER THR ALA VAL MET ASN PHE PHE VAL GLY GLY LEU SEQRES 4 C 201 SER ILE VAL CYS ASN VAL VAL VAL ILE THR TYR SER ALA SEQRES 5 C 201 LEU HIS PRO THR ALA PRO VAL GLU GLY HIS HIS HIS HIS SEQRES 6 C 201 HIS HIS ALA GLU ASP ILE VAL GLN VAL SER HIS HIS LEU SEQRES 7 C 201 THR SER PHE TYR GLY PRO ALA THR GLY LEU LEU PHE GLY SEQRES 8 C 201 PHE THR TYR LEU TYR ALA ALA ILE ASN HIS THR PHE GLY SEQRES 9 C 201 LEU ASP TRP ARG PRO TYR SER TRP TYR SER LEU PHE VAL SEQRES 10 C 201 ALA ILE ASN THR VAL PRO ALA ALA ILE LEU SER HIS TYR SEQRES 11 C 201 SER ASP MET LEU ASP ASP HIS LYS VAL LEU GLY ILE THR SEQRES 12 C 201 GLU GLY ASP TRP TRP ALA ILE ILE TRP LEU ALA TRP GLY SEQRES 13 C 201 VAL LEU TRP LEU THR ALA PHE ILE GLU ASN ILE LEU LYS SEQRES 14 C 201 ILE PRO LEU GLY LYS PHE THR PRO TRP LEU ALA ILE ILE SEQRES 15 C 201 GLU GLY ILE LEU THR ALA TRP ILE PRO ALA TRP LEU LEU SEQRES 16 C 201 PHE ILE GLN HIS TRP VAL HET XP4 A 201 17 HET XP4 A 202 10 HET XP4 B 301 36 HET XP4 B 302 40 HET XP4 B 303 18 HET XP4 B 304 17 HET XP4 B 305 10 HET XP4 C 301 40 HET XP4 C 302 10 HETNAM XP4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE FORMUL 4 XP4 9(C31 H60 O8 P 1-) SITE 1 AC1 2 XP4 B 301 XP4 C 301 SITE 1 AC2 1 XP4 B 305 SITE 1 AC3 11 PHE A 34 VAL A 42 THR A 96 XP4 A 201 SITE 2 AC3 11 ILE B 41 ILE B 93 PHE B 97 XP4 B 302 SITE 3 AC3 11 XP4 B 304 XP4 B 305 XP4 C 301 SITE 1 AC4 9 LYS B 27 PHE B 34 THR B 96 XP4 B 301 SITE 2 AC4 9 XP4 B 303 XP4 B 304 ILE C 93 PHE C 97 SITE 3 AC4 9 XP4 C 301 SITE 1 AC5 3 XP4 B 302 PHE C 97 XP4 C 301 SITE 1 AC6 2 XP4 B 301 XP4 B 302 SITE 1 AC7 8 XP4 A 202 ILE B 41 VAL B 45 VAL B 46 SITE 2 AC7 8 XP4 B 301 VAL C 45 THR C 49 XP4 C 302 SITE 1 AC8 10 PHE A 97 XP4 A 201 LYS B 27 XP4 B 301 SITE 2 AC8 10 XP4 B 302 XP4 B 303 LYS C 27 PHE C 34 SITE 3 AC8 10 PHE C 35 THR C 96 SITE 1 AC9 1 XP4 B 305 CRYST1 122.904 122.904 141.348 90.00 90.00 90.00 P 42 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007075 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.750551 -0.250299 0.611574 0.04967 1 MTRIX2 2 -0.248946 0.750203 0.612554 0.00615 1 MTRIX3 2 -0.612126 -0.612002 0.500754 0.09779 1 MTRIX1 3 0.750076 -0.249240 -0.612589 0.01950 1 MTRIX2 3 -0.252691 0.747985 -0.613731 0.02353 1 MTRIX3 3 0.611174 0.615141 0.498065 -0.14983 1 MTRIX1 4 0.251723 -0.749851 -0.611848 0.12570 1 MTRIX2 4 -0.751382 0.247033 -0.611882 0.17316 1 MTRIX3 4 0.609967 0.613757 -0.501241 -0.13262 1