HEADER DNA BINDING PROTEIN 04-DEC-11 3UX8 TITLE CRYSTAL STRUCTURE OF UVRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCINUCLEASE ABC, A SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS; SOURCE 3 ORGANISM_TAXID: 550542; SOURCE 4 STRAIN: Y412MC52; SOURCE 5 GENE: GYMC52_3203, UVRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS UVRA, NUCLEOTIDE EXCISION REPAIR, DNA REPAIR, ABC ATPASE, DNA, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SAMUELS,D.PAKOTIPRAPHA,D.JERUZALMI REVDAT 5 28-FEB-24 3UX8 1 REMARK SEQADV LINK REVDAT 4 16-AUG-17 3UX8 1 SOURCE REMARK REVDAT 3 07-MAY-14 3UX8 1 HETATM REMARK REVDAT 2 09-MAY-12 3UX8 1 JRNL REVDAT 1 08-FEB-12 3UX8 0 JRNL AUTH D.PAKOTIPRAPHA,M.SAMUELS,K.SHEN,J.H.HU,D.JERUZALMI JRNL TITL STRUCTURE AND MECHANISM OF THE UVRA-UVRB DNA DAMAGE SENSOR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 291 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22307053 JRNL DOI 10.1038/NSMB.2240 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 40344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2414 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4338 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.62000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4429 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5985 ; 1.257 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 5.340 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;30.593 ;23.367 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 782 ;14.442 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;17.603 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 687 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3296 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 88 REMARK 3 RESIDUE RANGE : A 504 A 591 REMARK 3 ORIGIN FOR THE GROUP (A): 64.393 36.881 17.760 REMARK 3 T TENSOR REMARK 3 T11: 0.0930 T22: 0.0550 REMARK 3 T33: 0.0546 T12: 0.0140 REMARK 3 T13: -0.0011 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 1.4292 L22: 0.7962 REMARK 3 L33: 2.2730 L12: -0.1505 REMARK 3 L13: -0.3965 L23: 0.0411 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.1314 S13: -0.1899 REMARK 3 S21: -0.1077 S22: 0.0835 S23: -0.0870 REMARK 3 S31: 0.2185 S32: 0.1824 S33: -0.0382 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 609 A 687 REMARK 3 RESIDUE RANGE : A 843 A 949 REMARK 3 ORIGIN FOR THE GROUP (A): 42.036 47.369 36.463 REMARK 3 T TENSOR REMARK 3 T11: 0.0036 T22: 0.0321 REMARK 3 T33: 0.0438 T12: -0.0087 REMARK 3 T13: -0.0073 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.4815 L22: 1.2584 REMARK 3 L33: 2.0064 L12: -0.3009 REMARK 3 L13: -0.4066 L23: 0.3812 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.0464 S13: 0.0609 REMARK 3 S21: -0.0048 S22: -0.0248 S23: 0.1259 REMARK 3 S31: 0.0319 S32: -0.1458 S33: -0.0170 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 105 REMARK 3 RESIDUE RANGE : A 433 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 45.155 48.483 8.963 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.2964 REMARK 3 T33: 0.0885 T12: 0.0494 REMARK 3 T13: -0.0370 T23: 0.0641 REMARK 3 L TENSOR REMARK 3 L11: 3.9518 L22: 1.9660 REMARK 3 L33: 5.5055 L12: -1.4608 REMARK 3 L13: -1.7440 L23: 1.7786 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: 0.7849 S13: 0.1189 REMARK 3 S21: -0.3571 S22: -0.2278 S23: 0.1588 REMARK 3 S31: -0.3614 S32: -0.5946 S33: 0.1487 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 688 A 842 REMARK 3 ORIGIN FOR THE GROUP (A): 74.180 61.197 40.986 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0408 REMARK 3 T33: 0.0853 T12: 0.0173 REMARK 3 T13: 0.0237 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 3.2014 L22: 1.7490 REMARK 3 L33: 1.3983 L12: 1.4105 REMARK 3 L13: 0.6077 L23: -0.1085 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.0564 S13: 0.3295 REMARK 3 S21: -0.0478 S22: -0.0523 S23: 0.0196 REMARK 3 S31: -0.0563 S32: 0.0894 S33: 0.0648 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 82.018 69.353 30.357 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.2543 REMARK 3 T33: 0.1770 T12: 0.0136 REMARK 3 T13: -0.0108 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1002 A 1002 REMARK 3 ORIGIN FOR THE GROUP (A): 37.938 52.549 20.655 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.2096 REMARK 3 T33: 0.1498 T12: 0.0236 REMARK 3 T13: -0.0202 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 21.8719 L22: 28.9592 REMARK 3 L33: 2.0777 L12: 1.4329 REMARK 3 L13: 5.8275 L23: -3.5096 REMARK 3 S TENSOR REMARK 3 S11: 0.6538 S12: -0.2439 S13: -0.3571 REMARK 3 S21: -0.8158 S22: -0.3662 S23: 1.1123 REMARK 3 S31: 0.2953 S32: -0.0258 S33: -0.2876 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1101 A 1300 REMARK 3 ORIGIN FOR THE GROUP (A): 57.761 47.763 33.029 REMARK 3 T TENSOR REMARK 3 T11: 0.1555 T22: 0.1104 REMARK 3 T33: 0.0933 T12: -0.0006 REMARK 3 T13: -0.0077 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 0.7692 L22: 0.2100 REMARK 3 L33: 0.4315 L12: 0.0860 REMARK 3 L13: 0.0316 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0270 S13: 0.0191 REMARK 3 S21: 0.0019 S22: 0.0159 S23: 0.0147 REMARK 3 S31: 0.0462 S32: 0.0169 S33: -0.0209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3UX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42002 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BICINE, PEG 20,000, 1,4-DIOXANE, PH REMARK 280 9.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.32650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.32650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 128.65300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 58 REMARK 465 SER A 59 REMARK 465 ALA A 60 REMARK 465 TYR A 61 REMARK 465 ALA A 62 REMARK 465 ARG A 63 REMARK 465 GLN A 64 REMARK 465 PHE A 65 REMARK 465 LEU A 66 REMARK 465 GLY A 67 REMARK 465 GLN A 68 REMARK 465 MET A 69 REMARK 465 GLU A 70 REMARK 465 LYS A 71 REMARK 465 THR A 90A REMARK 465 SER A 90B REMARK 465 ARG A 90C REMARK 465 ASN A 90D REMARK 465 PRO A 90E REMARK 465 ASP A 408 REMARK 465 TYR A 409 REMARK 465 LEU A 410 REMARK 465 ARG A 411 REMARK 465 LEU A 412 REMARK 465 LEU A 413 REMARK 465 PHE A 414 REMARK 465 ALA A 415 REMARK 465 ARG A 416 REMARK 465 ILE A 417 REMARK 465 GLY A 418 REMARK 465 ARG A 419 REMARK 465 LEU A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 GLY A 423 REMARK 465 LYS A 424 REMARK 465 HIS A 425 REMARK 465 ILE A 426 REMARK 465 GLY A 427 REMARK 465 GLU A 428 REMARK 465 VAL A 429 REMARK 465 THR A 430 REMARK 465 ALA A 431 REMARK 465 MET A 432 REMARK 465 THR A 435 REMARK 465 GLU A 436 REMARK 465 ALA A 437 REMARK 465 LEU A 438 REMARK 465 ALA A 439 REMARK 465 PHE A 440 REMARK 465 PHE A 441 REMARK 465 ASP A 442 REMARK 465 GLY A 443 REMARK 465 LEU A 444 REMARK 465 GLU A 445 REMARK 465 LEU A 446 REMARK 465 THR A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLU A 450 REMARK 465 ALA A 451 REMARK 465 GLN A 452 REMARK 465 ILE A 453 REMARK 465 ALA A 454 REMARK 465 ARG A 455 REMARK 465 LEU A 456 REMARK 465 ILE A 457 REMARK 465 LEU A 458 REMARK 465 ARG A 459 REMARK 465 GLU A 460 REMARK 465 ILE A 745 REMARK 465 LYS A 746 REMARK 465 ILE A 747 REMARK 465 GLU A 748 REMARK 465 MET A 749 REMARK 465 HIS A 750 REMARK 465 PHE A 751 REMARK 465 LEU A 752 REMARK 465 PRO A 753 REMARK 465 ASP A 754 REMARK 465 VAL A 755 REMARK 465 TYR A 756 REMARK 465 ALA A 950 REMARK 465 LYS A 951 REMARK 465 ALA A 952 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 12 -116.78 44.79 REMARK 500 THR A 44 -70.75 -108.99 REMARK 500 ASP A 87 -159.59 -143.34 REMARK 500 GLU A 103 14.11 57.57 REMARK 500 HIS A 618 -121.25 52.63 REMARK 500 VAL A 650 -69.57 -94.95 REMARK 500 VAL A 761 -61.85 -90.95 REMARK 500 ARG A 766 -15.29 78.83 REMARK 500 GLU A 903 -159.73 -108.80 REMARK 500 GLU A 948 32.31 -67.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 736 SG REMARK 620 2 CYS A 739 SG 108.6 REMARK 620 3 CYS A 759 SG 110.5 114.0 REMARK 620 4 CYS A 762 SG 111.4 104.1 108.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 1002 DBREF 3UX8 A 1 86 UNP E8SW61 E8SW61_GEOS2 4 88 DBREF 3UX8 A 705 952 UNP E8SW61 E8SW61_GEOS2 708 955 SEQADV 3UX8 MET A -19 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 GLY A -18 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 SER A -17 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 SER A -16 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 HIS A -15 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 HIS A -14 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 HIS A -13 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 HIS A -12 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 HIS A -11 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 HIS A -10 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 SER A -9 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 SER A -8 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 GLY A -7 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 LEU A -6 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 VAL A -5 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 PRO A -4 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 ARG A -3 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 GLY A -2 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 SER A -1 UNP E8SW61 EXPRESSION TAG SEQADV 3UX8 HIS A 0 UNP E8SW61 EXPRESSION TAG SEQRES 1 A 670 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 670 LEU VAL PRO ARG GLY SER HIS MET ASP LYS ILE ILE VAL SEQRES 3 A 670 LYS GLY ALA ARG ALA HIS ASN LEU LYS ASN ILE ASP VAL SEQRES 4 A 670 GLU ILE PRO ARG GLY LYS LEU VAL VAL LEU THR GLY LEU SEQRES 5 A 670 SER GLY SER GLY LYS SER SER LEU ALA PHE ASP THR ILE SEQRES 6 A 670 TYR ALA GLU GLY GLN ARG ARG TYR VAL GLU SER LEU SER SEQRES 7 A 670 ALA TYR ALA ARG GLN PHE LEU GLY GLN MET GLU LYS PRO SEQRES 8 A 670 ASP VAL ASP ALA ILE GLU GLY LEU SER PRO ALA ILE SER SEQRES 9 A 670 ILE ASP GLN LYS THR THR SER ARG ASN PRO ARG SER THR SEQRES 10 A 670 VAL GLY THR VAL THR GLU ILE TYR ASP TYR LEU ARG LEU SEQRES 11 A 670 LEU PHE ALA ARG ILE GLY ARG LEU VAL GLY GLY LYS HIS SEQRES 12 A 670 ILE GLY GLU VAL THR ALA MET SER VAL THR GLU ALA LEU SEQRES 13 A 670 ALA PHE PHE ASP GLY LEU GLU LEU THR GLU LYS GLU ALA SEQRES 14 A 670 GLN ILE ALA ARG LEU ILE LEU ARG GLU ILE ARG ASP ARG SEQRES 15 A 670 LEU GLY PHE LEU GLN ASN VAL GLY LEU ASP TYR LEU THR SEQRES 16 A 670 LEU SER ARG SER ALA GLY THR LEU SER GLY GLY GLU ALA SEQRES 17 A 670 GLN ARG ILE ARG LEU ALA THR GLN ILE GLY SER ARG LEU SEQRES 18 A 670 THR GLY VAL LEU TYR VAL LEU ASP GLU PRO SER ILE GLY SEQRES 19 A 670 LEU HIS GLN ARG ASP ASN ASP ARG LEU ILE ALA THR LEU SEQRES 20 A 670 LYS SER MET ARG ASP LEU GLY ASN THR LEU ILE VAL VAL SEQRES 21 A 670 GLU HIS ASP GLU ASP THR MET LEU ALA ALA ASP TYR LEU SEQRES 22 A 670 ILE ASP ILE GLY PRO GLY ALA GLY ILE HIS GLY GLY GLU SEQRES 23 A 670 VAL VAL ALA ALA GLY THR PRO GLU GLU VAL MET ASN ASP SEQRES 24 A 670 PRO ASN SER LEU THR GLY GLN TYR LEU SER GLY LYS LYS SEQRES 25 A 670 PHE ILE PRO ILE PRO ALA GLU ARG ARG ARG PRO ASP GLY SEQRES 26 A 670 ARG TRP LEU GLU VAL VAL GLY ALA ARG GLU HIS ASN LEU SEQRES 27 A 670 LYS ASN VAL SER VAL LYS ILE PRO LEU GLY THR PHE VAL SEQRES 28 A 670 ALA VAL THR GLY VAL SER GLY SER GLY LYS SER THR LEU SEQRES 29 A 670 VAL ASN GLU VAL LEU TYR LYS ALA LEU ALA GLN LYS LEU SEQRES 30 A 670 HIS ARG ALA LYS ALA LYS PRO GLY GLU HIS ARG ASP ILE SEQRES 31 A 670 ARG GLY LEU GLU HIS LEU ASP LYS VAL ILE ASP ILE ASP SEQRES 32 A 670 GLN SER PRO ILE GLY ARG THR PRO ARG SER ASN PRO ALA SEQRES 33 A 670 THR TYR THR GLY VAL PHE ASP ASP ILE ARG ASP VAL PHE SEQRES 34 A 670 ALA SER THR ASN GLU ALA LYS VAL ARG GLY TYR LYS LYS SEQRES 35 A 670 GLY ARG PHE SER PHE ASN VAL LYS GLY GLY ARG CYS GLU SEQRES 36 A 670 ALA CYS HIS GLY ASP GLY ILE ILE LYS ILE GLU MET HIS SEQRES 37 A 670 PHE LEU PRO ASP VAL TYR VAL PRO CYS GLU VAL CYS HIS SEQRES 38 A 670 GLY LYS ARG TYR ASN ARG GLU THR LEU GLU VAL THR TYR SEQRES 39 A 670 LYS GLY LYS ASN ILE ALA GLU VAL LEU ASP MET THR VAL SEQRES 40 A 670 GLU ASP ALA LEU ASP PHE PHE ALA SER ILE PRO LYS ILE SEQRES 41 A 670 LYS ARG LYS LEU GLU THR LEU TYR ASP VAL GLY LEU GLY SEQRES 42 A 670 TYR MET LYS LEU GLY GLN PRO ALA THR THR LEU SER GLY SEQRES 43 A 670 GLY GLU ALA GLN ARG VAL LYS LEU ALA ALA GLU LEU HIS SEQRES 44 A 670 ARG ARG SER ASN GLY ARG THR LEU TYR ILE LEU ASP GLU SEQRES 45 A 670 PRO THR THR GLY LEU HIS VAL ASP ASP ILE ALA ARG LEU SEQRES 46 A 670 LEU ASP VAL LEU HIS ARG LEU VAL ASP ASN GLY ASP THR SEQRES 47 A 670 VAL LEU VAL ILE GLU HIS ASN LEU ASP VAL ILE LYS THR SEQRES 48 A 670 ALA ASP TYR ILE ILE ASP LEU GLY PRO GLU GLY GLY ASP SEQRES 49 A 670 ARG GLY GLY GLN ILE VAL ALA VAL GLY THR PRO GLU GLU SEQRES 50 A 670 VAL ALA GLU VAL LYS GLU SER HIS THR GLY ARG TYR LEU SEQRES 51 A 670 LYS PRO ILE LEU GLU ARG ASP ARG ALA ARG MET GLN ALA SEQRES 52 A 670 ARG TYR GLU ALA ALA LYS ALA HET ZN A1001 1 HET ADP A1002 27 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *200(H2 O) HELIX 1 1 GLY A 36 PHE A 42 1 7 HELIX 2 2 THR A 44 GLU A 55 1 12 HELIX 3 3 THR A 97 THR A 102 1 6 HELIX 4 4 ARG A 462 VAL A 471 1 10 HELIX 5 5 SER A 481 LEU A 485 5 5 HELIX 6 6 SER A 486 SER A 501 1 16 HELIX 7 7 HIS A 518 ARG A 520 5 3 HELIX 8 8 ASP A 521 LEU A 535 1 15 HELIX 9 9 ASP A 545 ALA A 552 1 8 HELIX 10 10 ALA A 562 GLY A 566 5 5 HELIX 11 11 THR A 574 ASN A 580 1 7 HELIX 12 12 SER A 584 SER A 591 1 8 HELIX 13 13 GLY A 642 ASN A 648 1 7 HELIX 14 14 VAL A 650 ARG A 661 1 12 HELIX 15 15 GLY A 674 LEU A 678 5 5 HELIX 16 16 ASN A 696 GLY A 702 1 7 HELIX 17 17 GLY A 702 SER A 713 1 12 HELIX 18 18 THR A 714 GLY A 721 1 8 HELIX 19 19 LYS A 723 SER A 728 5 6 HELIX 20 20 ASN A 768 GLU A 773 1 6 HELIX 21 21 ASN A 780 ASP A 786 1 7 HELIX 22 22 THR A 788 PHE A 796 1 9 HELIX 23 23 ILE A 799 VAL A 812 1 14 HELIX 24 24 PRO A 822 LEU A 826 5 5 HELIX 25 25 SER A 827 ARG A 842 1 16 HELIX 26 26 HIS A 860 ASN A 877 1 18 HELIX 27 27 ASN A 887 LYS A 892 1 6 HELIX 28 28 GLY A 904 GLY A 908 5 5 HELIX 29 29 THR A 916 GLU A 922 1 7 HELIX 30 30 SER A 926 GLU A 948 1 23 SHEET 1 A 3 ILE A 17 PRO A 22 0 SHEET 2 A 3 LYS A 3 ALA A 9 -1 N ILE A 4 O ILE A 21 SHEET 3 A 3 ALA A 76 GLU A 78 -1 O GLU A 78 N ILE A 5 SHEET 1 B 6 ALA A 83 ILE A 86 0 SHEET 2 B 6 LEU A 507 ASP A 511 1 O VAL A 509 N ILE A 84 SHEET 3 B 6 THR A 538 VAL A 542 1 O VAL A 542 N LEU A 510 SHEET 4 B 6 LEU A 26 THR A 30 1 N VAL A 27 O LEU A 539 SHEET 5 B 6 TYR A 554 ILE A 558 1 O ILE A 556 N THR A 30 SHEET 6 B 6 VAL A 569 GLY A 573 -1 O ALA A 571 N ASP A 557 SHEET 1 C 3 VAL A 623 PRO A 628 0 SHEET 2 C 3 TRP A 609 ALA A 615 -1 N LEU A 610 O ILE A 627 SHEET 3 C 3 ASP A 671 ARG A 673 -1 O ASP A 671 N VAL A 613 SHEET 1 D 6 LYS A 680 ASP A 683 0 SHEET 2 D 6 THR A 848 ASP A 853 1 O ILE A 851 N ILE A 682 SHEET 3 D 6 THR A 880 ILE A 884 1 O THR A 880 N TYR A 850 SHEET 4 D 6 PHE A 632 THR A 636 1 N VAL A 633 O VAL A 881 SHEET 5 D 6 TYR A 896 GLY A 901 1 O LEU A 900 N THR A 636 SHEET 6 D 6 GLN A 910 GLY A 915 -1 O ALA A 913 N ASP A 899 LINK SG CYS A 736 ZN ZN A1001 1555 1555 2.36 LINK SG CYS A 739 ZN ZN A1001 1555 1555 2.39 LINK SG CYS A 759 ZN ZN A1001 1555 1555 2.53 LINK SG CYS A 762 ZN ZN A1001 1555 1555 2.33 CISPEP 1 GLY A 901 PRO A 902 0 0.91 SITE 1 AC1 4 CYS A 736 CYS A 739 CYS A 759 CYS A 762 SITE 1 AC2 19 TYR A 475 ARG A 480 HIS A 618 ASN A 619 SITE 2 AC2 19 VAL A 638 SER A 639 GLY A 640 SER A 641 SITE 3 AC2 19 GLY A 642 LYS A 643 SER A 644 THR A 645 SITE 4 AC2 19 GLY A 905 HOH A1107 HOH A1113 HOH A1137 SITE 5 AC2 19 HOH A1152 HOH A1238 HOH A1267 CRYST1 128.653 51.330 112.395 90.00 97.27 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007773 0.000000 0.000992 0.00000 SCALE2 0.000000 0.019482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008969 0.00000