HEADER OXIDOREDUCTASE/INHIBITOR 05-DEC-11 3UXE TITLE DESIGN, SYNTHESIS AND BIOLOGICAL EVALUATION OF POTENT QUINOLINE AND TITLE 2 PYRROLOQUINOLINE AMMOSAMIDE ANALOGUES AS INHIBITORS FOR QUINONE TITLE 3 REDUCTASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSYLDIHYDRONICOTINAMIDE DEHYDROGENASE [QUINONE]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NRH DEHYDROGENASE [QUINONE] 2, NRH:QUINONE OXIDOREDUCTASE 2, COMPND 5 QUINONE REDUCTASE 2, QR2; COMPND 6 EC: 1.10.99.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NQO2, NMOR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN, QUINONE REDUCTASE, CYTOSOL, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.P.REDDY,K.C.JENSEN,A.D.MESECAR,P.E.FANWICK,M.CUSHMAN REVDAT 3 21-DEC-22 3UXE 1 REMARK SEQADV LINK REVDAT 2 25-JAN-12 3UXE 1 JRNL REVDAT 1 18-JAN-12 3UXE 0 JRNL AUTH P.V.REDDY,K.C.JENSEN,A.D.MESECAR,P.E.FANWICK,M.CUSHMAN JRNL TITL DESIGN, SYNTHESIS, AND BIOLOGICAL EVALUATION OF POTENT JRNL TITL 2 QUINOLINE AND PYRROLOQUINOLINE AMMOSAMIDE ANALOGUES AS JRNL TITL 3 INHIBITORS OF QUINONE REDUCTASE 2. JRNL REF J.MED.CHEM. V. 55 367 2012 JRNL REFN ISSN 0022-2623 JRNL PMID 22206487 JRNL DOI 10.1021/JM201251C REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 81497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4080 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 259 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 156 REMARK 3 SOLVENT ATOMS : 394 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3937 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5378 ; 2.535 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 8.390 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;36.253 ;24.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;14.032 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.077 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2998 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2298 ; 1.420 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3706 ; 2.104 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1639 ; 3.177 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1668 ; 4.488 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 230 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5895 -8.4372 -4.0137 REMARK 3 T TENSOR REMARK 3 T11: 0.0694 T22: 0.0042 REMARK 3 T33: 0.0452 T12: -0.0007 REMARK 3 T13: -0.0342 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.8209 L22: 0.9496 REMARK 3 L33: 2.8758 L12: 0.0511 REMARK 3 L13: 0.0879 L23: 0.1656 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: -0.0365 S13: -0.1071 REMARK 3 S21: 0.1040 S22: -0.0022 S23: -0.0239 REMARK 3 S31: 0.3528 S32: -0.0250 S33: -0.0519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 230 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4452 -7.5051 -26.8106 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0122 REMARK 3 T33: 0.0187 T12: -0.0086 REMARK 3 T13: -0.0110 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7243 L22: 1.0639 REMARK 3 L33: 1.8887 L12: -0.0493 REMARK 3 L13: -0.0338 L23: 0.1722 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.0603 S13: -0.0333 REMARK 3 S21: -0.0474 S22: 0.0412 S23: -0.0064 REMARK 3 S31: 0.1341 S32: -0.0327 S33: -0.0449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3UXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069328. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 65.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULFATE, 0.1M BISTRIS, REMARK 280 0.1M NACL, 5MM DTT, 12UM FAD, PH 6.7, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.27650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.40750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.97650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.40750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.27650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.97650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 34 O HOH A 463 1.83 REMARK 500 C18 465 B 304 O HOH A 498 1.86 REMARK 500 C18 465 A 303 O HOH B 541 1.90 REMARK 500 O ALA B 1 SG CYS B 34 2.00 REMARK 500 CE LYS B 182 O HOH B 582 2.10 REMARK 500 OE2 GLU A 218 O HOH A 540 2.15 REMARK 500 OD1 ASN B 45 O HOH B 578 2.16 REMARK 500 O HOH B 451 O HOH B 456 2.18 REMARK 500 O HOH B 437 O HOH B 587 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 568 O HOH B 465 2555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 1 C ALA B 1 O 0.126 REMARK 500 GLY B 2 N GLY B 2 CA 0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 27 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 PRO A 129 C - N - CA ANGL. DEV. = -11.2 DEGREES REMARK 500 LEU A 143 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 MET A 203 CG - SD - CE ANGL. DEV. = -18.4 DEGREES REMARK 500 GLY B 2 C - N - CA ANGL. DEV. = 14.9 DEGREES REMARK 500 GLY B 2 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 ARG B 49 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 49 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 78 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 78 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 MET B 116 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 ASP B 117 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 127 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 127 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 PHE B 181 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 LYS B 182 CD - CE - NZ ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 61 87.46 -160.29 REMARK 500 PRO A 129 -88.58 -86.31 REMARK 500 TYR A 132 -114.24 46.87 REMARK 500 TYR A 155 50.10 -92.90 REMARK 500 THR A 175 -70.30 -104.76 REMARK 500 GLU A 198 -90.17 119.37 REMARK 500 TYR B 132 -125.44 50.51 REMARK 500 TYR B 155 49.92 -90.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 128 PRO A 129 139.67 REMARK 500 PRO A 129 GLY A 130 132.43 REMARK 500 SER A 196 GLU A 197 -72.27 REMARK 500 ALA B 1 GLY B 2 -30.02 REMARK 500 GLY B 2 LYS B 3 -143.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 173 ND1 REMARK 620 2 HIS A 177 ND1 110.9 REMARK 620 3 CYS A 222 O 103.3 99.2 REMARK 620 4 CYS A 222 SG 123.9 115.8 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 173 ND1 REMARK 620 2 HIS B 177 ND1 106.1 REMARK 620 3 CYS B 222 O 108.1 99.2 REMARK 620 4 CYS B 222 SG 126.7 113.9 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 465 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 465 B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UXH RELATED DB: PDB DBREF 3UXE A 1 230 UNP P16083 NQO2_HUMAN 2 231 DBREF 3UXE B 1 230 UNP P16083 NQO2_HUMAN 2 231 SEQADV 3UXE PHE A 46 UNP P16083 LEU 47 VARIANT SEQADV 3UXE PHE B 46 UNP P16083 LEU 47 VARIANT SEQRES 1 A 230 ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN GLU SEQRES 2 A 230 PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA VAL SEQRES 3 A 230 ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SER SEQRES 4 A 230 ASP LEU TYR ALA MET ASN PHE GLU PRO ARG ALA THR ASP SEQRES 5 A 230 LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL PHE SEQRES 6 A 230 ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN ARG SEQRES 7 A 230 SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS VAL SEQRES 8 A 230 ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU TYR SEQRES 9 A 230 TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET ASP SEQRES 10 A 230 ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO GLY SEQRES 11 A 230 PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA LEU SEQRES 12 A 230 LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR THR SEQRES 13 A 230 LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU TRP SEQRES 14 A 230 PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE LYS SEQRES 15 A 230 VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE ALA SEQRES 16 A 230 SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SER SEQRES 17 A 230 GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE PRO SEQRES 18 A 230 CYS THR ALA HIS TRP HIS PHE GLY GLN SEQRES 1 B 230 ALA GLY LYS LYS VAL LEU ILE VAL TYR ALA HIS GLN GLU SEQRES 2 B 230 PRO LYS SER PHE ASN GLY SER LEU LYS ASN VAL ALA VAL SEQRES 3 B 230 ASP GLU LEU SER ARG GLN GLY CYS THR VAL THR VAL SER SEQRES 4 B 230 ASP LEU TYR ALA MET ASN PHE GLU PRO ARG ALA THR ASP SEQRES 5 B 230 LYS ASP ILE THR GLY THR LEU SER ASN PRO GLU VAL PHE SEQRES 6 B 230 ASN TYR GLY VAL GLU THR HIS GLU ALA TYR LYS GLN ARG SEQRES 7 B 230 SER LEU ALA SER ASP ILE THR ASP GLU GLN LYS LYS VAL SEQRES 8 B 230 ARG GLU ALA ASP LEU VAL ILE PHE GLN PHE PRO LEU TYR SEQRES 9 B 230 TRP PHE SER VAL PRO ALA ILE LEU LYS GLY TRP MET ASP SEQRES 10 B 230 ARG VAL LEU CYS GLN GLY PHE ALA PHE ASP ILE PRO GLY SEQRES 11 B 230 PHE TYR ASP SER GLY LEU LEU GLN GLY LYS LEU ALA LEU SEQRES 12 B 230 LEU SER VAL THR THR GLY GLY THR ALA GLU MET TYR THR SEQRES 13 B 230 LYS THR GLY VAL ASN GLY ASP SER ARG TYR PHE LEU TRP SEQRES 14 B 230 PRO LEU GLN HIS GLY THR LEU HIS PHE CYS GLY PHE LYS SEQRES 15 B 230 VAL LEU ALA PRO GLN ILE SER PHE ALA PRO GLU ILE ALA SEQRES 16 B 230 SER GLU GLU GLU ARG LYS GLY MET VAL ALA ALA TRP SER SEQRES 17 B 230 GLN ARG LEU GLN THR ILE TRP LYS GLU GLU PRO ILE PRO SEQRES 18 B 230 CYS THR ALA HIS TRP HIS PHE GLY GLN HET ZN A 301 1 HET FAD A 302 53 HET 465 A 303 21 HET ZN B 301 1 HET GOL B 302 6 HET FAD B 303 53 HET 465 B 304 21 HETNAM ZN ZINC ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 465 8-AMINO-7-CHLORO-1-METHYL-6-(METHYLIDENEAMINO)-2-OXO-1, HETNAM 2 465 2-DIHYDROPYRROLO[4,3,2-DE]QUINOLINE-4-CARBOXAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 465 2(C13 H10 CL N5 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 10 HOH *394(H2 O) HELIX 1 1 SER A 16 GLY A 33 1 18 HELIX 2 2 THR A 51 ILE A 55 5 5 HELIX 3 3 ASN A 66 GLN A 77 1 12 HELIX 4 4 ALA A 81 ALA A 94 1 14 HELIX 5 5 PRO A 109 LEU A 120 1 12 HELIX 6 6 PHE A 131 GLY A 135 5 5 HELIX 7 7 ASP A 163 HIS A 173 1 11 HELIX 8 8 GLU A 198 THR A 213 1 16 HELIX 9 9 ILE A 214 GLU A 217 5 4 HELIX 10 10 THR A 223 GLY A 229 1 7 HELIX 11 11 SER B 16 GLN B 32 1 17 HELIX 12 12 THR B 51 ILE B 55 5 5 HELIX 13 13 ASN B 66 ARG B 78 1 13 HELIX 14 14 ALA B 81 ALA B 94 1 14 HELIX 15 15 PRO B 109 LEU B 120 1 12 HELIX 16 16 PHE B 131 GLY B 135 5 5 HELIX 17 17 ASP B 163 HIS B 173 1 11 HELIX 18 18 SER B 196 THR B 213 1 18 HELIX 19 19 ILE B 214 GLU B 217 5 4 HELIX 20 20 THR B 223 GLY B 229 1 7 SHEET 1 A 5 THR A 35 ASP A 40 0 SHEET 2 A 5 LYS A 4 TYR A 9 1 N ILE A 7 O SER A 39 SHEET 3 A 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 A 5 LEU A 141 THR A 147 1 O SER A 145 N PHE A 99 SHEET 5 A 5 LYS A 182 VAL A 183 1 O LYS A 182 N ALA A 142 SHEET 1 B 5 THR A 35 ASP A 40 0 SHEET 2 B 5 LYS A 4 TYR A 9 1 N ILE A 7 O SER A 39 SHEET 3 B 5 LEU A 96 PRO A 102 1 O ILE A 98 N VAL A 8 SHEET 4 B 5 LEU A 141 THR A 147 1 O SER A 145 N PHE A 99 SHEET 5 B 5 GLN A 187 SER A 189 1 O GLN A 187 N LEU A 144 SHEET 1 C 5 THR B 35 ASP B 40 0 SHEET 2 C 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 C 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 C 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 C 5 LYS B 182 VAL B 183 1 O LYS B 182 N ALA B 142 SHEET 1 D 5 THR B 35 ASP B 40 0 SHEET 2 D 5 LYS B 4 TYR B 9 1 N VAL B 5 O THR B 35 SHEET 3 D 5 LEU B 96 PRO B 102 1 O ILE B 98 N VAL B 8 SHEET 4 D 5 LEU B 141 THR B 148 1 O SER B 145 N PHE B 99 SHEET 5 D 5 GLN B 187 PHE B 190 1 O SER B 189 N VAL B 146 LINK ND1 HIS A 173 ZN ZN A 301 1555 1555 2.05 LINK ND1 HIS A 177 ZN ZN A 301 1555 1555 2.14 LINK O CYS A 222 ZN ZN A 301 1555 1555 2.00 LINK SG CYS A 222 ZN ZN A 301 1555 1555 2.23 LINK ND1 HIS B 173 ZN ZN B 301 1555 1555 2.11 LINK ND1 HIS B 177 ZN ZN B 301 1555 1555 2.10 LINK O CYS B 222 ZN ZN B 301 1555 1555 1.99 LINK SG CYS B 222 ZN ZN B 301 1555 1555 2.26 CISPEP 1 ALA A 1 GLY A 2 0 -29.06 CISPEP 2 GLU A 197 GLU A 198 0 -24.42 CISPEP 3 ILE B 128 PRO B 129 0 4.71 SITE 1 AC1 3 HIS A 173 HIS A 177 CYS A 222 SITE 1 AC2 29 HIS A 11 LYS A 15 SER A 16 PHE A 17 SITE 2 AC2 29 ASN A 18 SER A 20 PRO A 102 LEU A 103 SITE 3 AC2 29 TYR A 104 TRP A 105 PHE A 106 THR A 147 SITE 4 AC2 29 THR A 148 GLY A 149 GLY A 150 TYR A 155 SITE 5 AC2 29 GLU A 197 ARG A 200 LYS A 201 465 A 303 SITE 6 AC2 29 HOH A 460 HOH A 486 HOH A 494 HOH A 505 SITE 7 AC2 29 HOH A 506 HOH A 566 ASN B 66 ASP B 117 SITE 8 AC2 29 HOH B 541 SITE 1 AC3 9 TRP A 105 GLY A 149 GLY A 150 ASN A 161 SITE 2 AC3 9 FAD A 302 HOH A 497 PHE B 126 PHE B 178 SITE 3 AC3 9 HOH B 541 SITE 1 AC4 3 HIS B 173 HIS B 177 CYS B 222 SITE 1 AC5 6 ARG A 49 HOH A 510 ASN B 45 GLU B 47 SITE 2 AC5 6 ARG B 49 HOH B 588 SITE 1 AC6 29 ASN A 66 ASP A 117 HOH A 498 HIS B 11 SITE 2 AC6 29 LYS B 15 SER B 16 PHE B 17 ASN B 18 SITE 3 AC6 29 SER B 20 PRO B 102 LEU B 103 TYR B 104 SITE 4 AC6 29 TRP B 105 PHE B 106 THR B 147 THR B 148 SITE 5 AC6 29 GLY B 149 GLY B 150 TYR B 155 GLU B 193 SITE 6 AC6 29 ARG B 200 465 B 304 HOH B 432 HOH B 475 SITE 7 AC6 29 HOH B 521 HOH B 537 HOH B 550 HOH B 580 SITE 8 AC6 29 HOH B 618 SITE 1 AC7 11 PHE A 126 PHE A 178 HOH A 498 TRP B 105 SITE 2 AC7 11 GLY B 149 GLY B 150 MET B 154 ASN B 161 SITE 3 AC7 11 FAD B 303 HOH B 542 HOH B 593 CRYST1 56.553 83.953 106.815 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017683 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011911 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009362 0.00000