data_3UXU # _entry.id 3UXU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UXU RCSB RCSB069344 WWPDB D_1000069344 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UXU _pdbx_database_status.recvd_initial_deposition_date 2011-12-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eilers, B.J.' 1 'Young, M.J.' 2 'Lawrence, C.M.' 3 # _citation.id primary _citation.title ;The Structure of an Archaeal Viral Integrase Reveals an Evolutionarily Conserved Catalytic Core yet Supports a Mechanism of DNA Cleavage in trans. ; _citation.journal_abbrev J.Virol. _citation.journal_volume 86 _citation.page_first 8309 _citation.page_last 8313 _citation.year 2012 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22593158 _citation.pdbx_database_id_DOI 10.1128/JVI.00547-12 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Eilers, B.J.' 1 primary 'Young, M.J.' 2 primary 'Lawrence, C.M.' 3 # _cell.entry_id 3UXU _cell.length_a 73.963 _cell.length_b 73.963 _cell.length_c 176.251 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UXU _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable integrase' 20021.246 1 ? 'V215I, T307A' 'catalytic domain (176-334)' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEVLKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHIT PLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPARVLTQHYVSLFGIAKEQYKKYAEWL KGVHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;NADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEVLKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHIT PLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPARVLTQHYVSLFGIAKEQYKKYAEWL KGVHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 ALA n 1 3 ASP n 1 4 ILE n 1 5 TYR n 1 6 ILE n 1 7 PRO n 1 8 THR n 1 9 LEU n 1 10 GLU n 1 11 GLU n 1 12 ILE n 1 13 LYS n 1 14 ARG n 1 15 THR n 1 16 LEU n 1 17 GLN n 1 18 LEU n 1 19 ALA n 1 20 LYS n 1 21 ASP n 1 22 TYR n 1 23 SER n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 TYR n 1 28 PHE n 1 29 ILE n 1 30 TYR n 1 31 ARG n 1 32 ILE n 1 33 ALA n 1 34 LEU n 1 35 GLU n 1 36 SER n 1 37 GLY n 1 38 VAL n 1 39 ARG n 1 40 LEU n 1 41 SER n 1 42 GLU n 1 43 VAL n 1 44 LEU n 1 45 LYS n 1 46 VAL n 1 47 LEU n 1 48 LYS n 1 49 GLU n 1 50 PRO n 1 51 GLU n 1 52 ARG n 1 53 ASP n 1 54 ILE n 1 55 CYS n 1 56 GLY n 1 57 ASN n 1 58 ASP n 1 59 VAL n 1 60 CYS n 1 61 TYR n 1 62 TYR n 1 63 PRO n 1 64 LEU n 1 65 SER n 1 66 TRP n 1 67 THR n 1 68 ARG n 1 69 GLY n 1 70 TYR n 1 71 LYS n 1 72 GLY n 1 73 VAL n 1 74 PHE n 1 75 TYR n 1 76 VAL n 1 77 PHE n 1 78 HIS n 1 79 ILE n 1 80 THR n 1 81 PRO n 1 82 LEU n 1 83 LYS n 1 84 ARG n 1 85 VAL n 1 86 GLU n 1 87 VAL n 1 88 THR n 1 89 LYS n 1 90 TRP n 1 91 ALA n 1 92 ILE n 1 93 ALA n 1 94 ASP n 1 95 PHE n 1 96 GLU n 1 97 ARG n 1 98 ARG n 1 99 HIS n 1 100 LYS n 1 101 ASP n 1 102 ALA n 1 103 ILE n 1 104 ALA n 1 105 ILE n 1 106 LYS n 1 107 TYR n 1 108 PHE n 1 109 ARG n 1 110 LYS n 1 111 PHE n 1 112 VAL n 1 113 ALA n 1 114 SER n 1 115 LYS n 1 116 MET n 1 117 ALA n 1 118 GLU n 1 119 LEU n 1 120 SER n 1 121 VAL n 1 122 PRO n 1 123 LEU n 1 124 ASP n 1 125 ILE n 1 126 ILE n 1 127 ASP n 1 128 PHE n 1 129 ILE n 1 130 GLN n 1 131 GLY n 1 132 ARG n 1 133 LYS n 1 134 PRO n 1 135 ALA n 1 136 ARG n 1 137 VAL n 1 138 LEU n 1 139 THR n 1 140 GLN n 1 141 HIS n 1 142 TYR n 1 143 VAL n 1 144 SER n 1 145 LEU n 1 146 PHE n 1 147 GLY n 1 148 ILE n 1 149 ALA n 1 150 LYS n 1 151 GLU n 1 152 GLN n 1 153 TYR n 1 154 LYS n 1 155 LYS n 1 156 TYR n 1 157 ALA n 1 158 GLU n 1 159 TRP n 1 160 LEU n 1 161 LYS n 1 162 GLY n 1 163 VAL n 1 164 HIS n 1 165 HIS n 1 166 HIS n 1 167 HIS n 1 168 HIS n 1 169 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene d335 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Sulfolobus solfataricus' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 244589 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'pDEST, Gateway T7 vectors' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDEST14 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code INTG_SSV1 _struct_ref.pdbx_db_accession P20214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NADIYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHIT PLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWL KGV ; _struct_ref.pdbx_align_begin 173 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3UXU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 163 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P20214 _struct_ref_seq.db_align_beg 173 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 335 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 173 _struct_ref_seq.pdbx_auth_seq_align_end 335 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UXU VAL A 43 ? UNP P20214 ILE 215 'ENGINEERED MUTATION' 215 1 1 3UXU ALA A 135 ? UNP P20214 THR 307 'ENGINEERED MUTATION' 307 2 1 3UXU HIS A 164 ? UNP P20214 ? ? 'EXPRESSION TAG' 336 3 1 3UXU HIS A 165 ? UNP P20214 ? ? 'EXPRESSION TAG' 337 4 1 3UXU HIS A 166 ? UNP P20214 ? ? 'EXPRESSION TAG' 338 5 1 3UXU HIS A 167 ? UNP P20214 ? ? 'EXPRESSION TAG' 339 6 1 3UXU HIS A 168 ? UNP P20214 ? ? 'EXPRESSION TAG' 340 7 1 3UXU HIS A 169 ? UNP P20214 ? ? 'EXPRESSION TAG' 341 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UXU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.48 _exptl_crystal.density_percent_sol 64.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 1% Tryptone, and 0.1 M HEPES at pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K' # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 PIXEL 'DECTRIS PILATUS 6M' 2009-12-05 'Rh coated flat mirror' 2 PIXEL 'DECTRIS PILATUS 6M' 2009-12-05 'Rh coated flat mirror' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Side scattering bent cube-root I-beam single crystal; asymmetric cut 4.965 degs' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Side scattering bent cube-root I-beam single crystal; asymmetric cut 4.965 degs' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.84917 1.0 2 0.97891 1.0 3 0.91837 1.0 4 0.97939 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'SSRL BEAMLINE BL11-1' SSRL BL11-1 ? 0.84917 2 SYNCHROTRON 'SSRL BEAMLINE BL11-1' SSRL BL11-1 ? '0.97891, 0.91837, 0.97939' # _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 _reflns.entry_id 3UXU _reflns.observed_criterion_sigma_I 595.3 _reflns.observed_criterion_sigma_F 10.2 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.7 _reflns.number_obs 8414 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.033 _reflns.pdbx_Rsym_value 0.043 _reflns.pdbx_netI_over_sigmaI 5.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1,2 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.299 _reflns_shell.pdbx_Rsym_value 0.315 _reflns_shell.meanI_over_sigI_obs 42.3 _reflns_shell.pdbx_redundancy 13.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3UXU _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7900 _refine.ls_number_reflns_all 8310 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.32 _refine.ls_d_res_high 2.706 _refine.ls_percent_reflns_obs 99.14 _refine.ls_R_factor_obs 0.19394 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19286 _refine.ls_R_factor_R_free 0.21442 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 410 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 63.971 _refine.aniso_B[1][1] 0.81 _refine.aniso_B[2][2] 0.81 _refine.aniso_B[3][3] -1.22 _refine.aniso_B[1][2] 0.41 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.399 _refine.pdbx_overall_ESU_R_Free 0.246 _refine.overall_SU_ML 0.185 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 19.855 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1329 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1351 _refine_hist.d_res_high 2.706 _refine_hist.d_res_low 36.32 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1386 'X-RAY DIFFRACTION' ? r_bond_other_d 0.005 0.020 ? 998 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.496 1.966 ? 1874 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.868 3.000 ? 2407 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.429 5.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.384 21.875 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.337 15.000 ? 257 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.798 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.082 0.200 ? 201 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1491 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 315 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.964 1.500 ? 799 'X-RAY DIFFRACTION' ? r_mcbond_other 0.114 1.500 ? 320 'X-RAY DIFFRACTION' ? r_mcangle_it 3.536 2.000 ? 1300 'X-RAY DIFFRACTION' ? r_scbond_it 3.697 3.000 ? 587 'X-RAY DIFFRACTION' ? r_scangle_it 6.472 4.500 ? 572 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.706 _refine_ls_shell.d_res_low 2.776 _refine_ls_shell.number_reflns_R_work 550 _refine_ls_shell.R_factor_R_work 0.268 _refine_ls_shell.percent_reflns_obs 95.87 _refine_ls_shell.R_factor_R_free 0.241 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3UXU _struct.title ;The structure of the catalytic domain of the Sulfolobus Spindle-shaped viral integrase reveals an evolutionarily conserved catalytic core and supports a mechanism of DNA cleavage in trans ; _struct.pdbx_descriptor 'Probable integrase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UXU _struct_keywords.pdbx_keywords RECOMBINATION _struct_keywords.text 'SSV1, Archaea, Archaeal virus, hyperthermophilic, Integrase, Disulfide, RECOMBINATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? SER A 23 ? THR A 180 SER A 195 1 ? 16 HELX_P HELX_P2 2 SER A 23 ? GLY A 37 ? SER A 195 GLY A 209 1 ? 15 HELX_P HELX_P3 3 ARG A 39 ? GLU A 49 ? ARG A 211 GLU A 221 1 ? 11 HELX_P HELX_P4 4 PRO A 50 ? ASP A 53 ? PRO A 222 ASP A 225 5 ? 4 HELX_P HELX_P5 5 THR A 88 ? HIS A 99 ? THR A 260 HIS A 271 1 ? 12 HELX_P HELX_P6 6 ALA A 104 ? LYS A 106 ? ALA A 276 LYS A 278 5 ? 3 HELX_P HELX_P7 7 TYR A 107 ? LEU A 119 ? TYR A 279 LEU A 291 1 ? 13 HELX_P HELX_P8 8 PRO A 122 ? GLN A 130 ? PRO A 294 GLN A 302 1 ? 9 HELX_P HELX_P9 9 THR A 139 ? GLY A 162 ? THR A 311 GLY A 334 1 ? 24 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 55 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 60 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 227 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 232 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.191 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 54 ? CYS A 55 ? ILE A 226 CYS A 227 A 2 CYS A 60 ? TRP A 66 ? CYS A 232 TRP A 238 A 3 GLY A 72 ? HIS A 78 ? GLY A 244 HIS A 250 A 4 ALA A 135 ? ARG A 136 ? ALA A 307 ARG A 308 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 54 ? N ILE A 226 O TYR A 61 ? O TYR A 233 A 2 3 N TRP A 66 ? N TRP A 238 O GLY A 72 ? O GLY A 244 A 3 4 N VAL A 73 ? N VAL A 245 O ALA A 135 ? O ALA A 307 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 TYR A 75 ? TYR A 247 . ? 1_555 ? 2 AC1 3 TYR A 142 ? TYR A 314 . ? 1_555 ? 3 AC1 3 VAL A 143 ? VAL A 315 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UXU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UXU _atom_sites.fract_transf_matrix[1][1] 0.013520 _atom_sites.fract_transf_matrix[1][2] 0.007806 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015612 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005674 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 173 ? ? ? A . n A 1 2 ALA 2 174 ? ? ? A . n A 1 3 ASP 3 175 ? ? ? A . n A 1 4 ILE 4 176 176 ILE ILE A . n A 1 5 TYR 5 177 177 TYR TYR A . n A 1 6 ILE 6 178 178 ILE ILE A . n A 1 7 PRO 7 179 179 PRO PRO A . n A 1 8 THR 8 180 180 THR THR A . n A 1 9 LEU 9 181 181 LEU LEU A . n A 1 10 GLU 10 182 182 GLU GLU A . n A 1 11 GLU 11 183 183 GLU GLU A . n A 1 12 ILE 12 184 184 ILE ILE A . n A 1 13 LYS 13 185 185 LYS LYS A . n A 1 14 ARG 14 186 186 ARG ARG A . n A 1 15 THR 15 187 187 THR THR A . n A 1 16 LEU 16 188 188 LEU LEU A . n A 1 17 GLN 17 189 189 GLN GLN A . n A 1 18 LEU 18 190 190 LEU LEU A . n A 1 19 ALA 19 191 191 ALA ALA A . n A 1 20 LYS 20 192 192 LYS LYS A . n A 1 21 ASP 21 193 193 ASP ASP A . n A 1 22 TYR 22 194 194 TYR TYR A . n A 1 23 SER 23 195 195 SER SER A . n A 1 24 GLU 24 196 196 GLU GLU A . n A 1 25 ASN 25 197 197 ASN ASN A . n A 1 26 VAL 26 198 198 VAL VAL A . n A 1 27 TYR 27 199 199 TYR TYR A . n A 1 28 PHE 28 200 200 PHE PHE A . n A 1 29 ILE 29 201 201 ILE ILE A . n A 1 30 TYR 30 202 202 TYR TYR A . n A 1 31 ARG 31 203 203 ARG ARG A . n A 1 32 ILE 32 204 204 ILE ILE A . n A 1 33 ALA 33 205 205 ALA ALA A . n A 1 34 LEU 34 206 206 LEU LEU A . n A 1 35 GLU 35 207 207 GLU GLU A . n A 1 36 SER 36 208 208 SER SER A . n A 1 37 GLY 37 209 209 GLY GLY A . n A 1 38 VAL 38 210 210 VAL VAL A . n A 1 39 ARG 39 211 211 ARG ARG A . n A 1 40 LEU 40 212 212 LEU LEU A . n A 1 41 SER 41 213 213 SER SER A . n A 1 42 GLU 42 214 214 GLU GLU A . n A 1 43 VAL 43 215 215 VAL VAL A . n A 1 44 LEU 44 216 216 LEU LEU A . n A 1 45 LYS 45 217 217 LYS LYS A . n A 1 46 VAL 46 218 218 VAL VAL A . n A 1 47 LEU 47 219 219 LEU LEU A . n A 1 48 LYS 48 220 220 LYS LYS A . n A 1 49 GLU 49 221 221 GLU GLU A . n A 1 50 PRO 50 222 222 PRO PRO A . n A 1 51 GLU 51 223 223 GLU GLU A . n A 1 52 ARG 52 224 224 ARG ARG A . n A 1 53 ASP 53 225 225 ASP ASP A . n A 1 54 ILE 54 226 226 ILE ILE A . n A 1 55 CYS 55 227 227 CYS CYS A . n A 1 56 GLY 56 228 228 GLY GLY A . n A 1 57 ASN 57 229 229 ASN ASN A . n A 1 58 ASP 58 230 230 ASP ASP A . n A 1 59 VAL 59 231 231 VAL VAL A . n A 1 60 CYS 60 232 232 CYS CYS A . n A 1 61 TYR 61 233 233 TYR TYR A . n A 1 62 TYR 62 234 234 TYR TYR A . n A 1 63 PRO 63 235 235 PRO PRO A . n A 1 64 LEU 64 236 236 LEU LEU A . n A 1 65 SER 65 237 237 SER SER A . n A 1 66 TRP 66 238 238 TRP TRP A . n A 1 67 THR 67 239 239 THR THR A . n A 1 68 ARG 68 240 240 ARG ARG A . n A 1 69 GLY 69 241 241 GLY GLY A . n A 1 70 TYR 70 242 242 TYR TYR A . n A 1 71 LYS 71 243 243 LYS LYS A . n A 1 72 GLY 72 244 244 GLY GLY A . n A 1 73 VAL 73 245 245 VAL VAL A . n A 1 74 PHE 74 246 246 PHE PHE A . n A 1 75 TYR 75 247 247 TYR TYR A . n A 1 76 VAL 76 248 248 VAL VAL A . n A 1 77 PHE 77 249 249 PHE PHE A . n A 1 78 HIS 78 250 250 HIS HIS A . n A 1 79 ILE 79 251 251 ILE ILE A . n A 1 80 THR 80 252 252 THR THR A . n A 1 81 PRO 81 253 253 PRO PRO A . n A 1 82 LEU 82 254 254 LEU LEU A . n A 1 83 LYS 83 255 255 LYS LYS A . n A 1 84 ARG 84 256 256 ARG ARG A . n A 1 85 VAL 85 257 257 VAL VAL A . n A 1 86 GLU 86 258 258 GLU GLU A . n A 1 87 VAL 87 259 259 VAL VAL A . n A 1 88 THR 88 260 260 THR THR A . n A 1 89 LYS 89 261 261 LYS LYS A . n A 1 90 TRP 90 262 262 TRP TRP A . n A 1 91 ALA 91 263 263 ALA ALA A . n A 1 92 ILE 92 264 264 ILE ILE A . n A 1 93 ALA 93 265 265 ALA ALA A . n A 1 94 ASP 94 266 266 ASP ASP A . n A 1 95 PHE 95 267 267 PHE PHE A . n A 1 96 GLU 96 268 268 GLU GLU A . n A 1 97 ARG 97 269 269 ARG ARG A . n A 1 98 ARG 98 270 270 ARG ARG A . n A 1 99 HIS 99 271 271 HIS HIS A . n A 1 100 LYS 100 272 272 LYS LYS A . n A 1 101 ASP 101 273 273 ASP ASP A . n A 1 102 ALA 102 274 274 ALA ALA A . n A 1 103 ILE 103 275 275 ILE ILE A . n A 1 104 ALA 104 276 276 ALA ALA A . n A 1 105 ILE 105 277 277 ILE ILE A . n A 1 106 LYS 106 278 278 LYS LYS A . n A 1 107 TYR 107 279 279 TYR TYR A . n A 1 108 PHE 108 280 280 PHE PHE A . n A 1 109 ARG 109 281 281 ARG ARG A . n A 1 110 LYS 110 282 282 LYS LYS A . n A 1 111 PHE 111 283 283 PHE PHE A . n A 1 112 VAL 112 284 284 VAL VAL A . n A 1 113 ALA 113 285 285 ALA ALA A . n A 1 114 SER 114 286 286 SER SER A . n A 1 115 LYS 115 287 287 LYS LYS A . n A 1 116 MET 116 288 288 MET MET A . n A 1 117 ALA 117 289 289 ALA ALA A . n A 1 118 GLU 118 290 290 GLU GLU A . n A 1 119 LEU 119 291 291 LEU LEU A . n A 1 120 SER 120 292 292 SER SER A . n A 1 121 VAL 121 293 293 VAL VAL A . n A 1 122 PRO 122 294 294 PRO PRO A . n A 1 123 LEU 123 295 295 LEU LEU A . n A 1 124 ASP 124 296 296 ASP ASP A . n A 1 125 ILE 125 297 297 ILE ILE A . n A 1 126 ILE 126 298 298 ILE ILE A . n A 1 127 ASP 127 299 299 ASP ASP A . n A 1 128 PHE 128 300 300 PHE PHE A . n A 1 129 ILE 129 301 301 ILE ILE A . n A 1 130 GLN 130 302 302 GLN GLN A . n A 1 131 GLY 131 303 303 GLY GLY A . n A 1 132 ARG 132 304 304 ARG ARG A . n A 1 133 LYS 133 305 305 LYS LYS A . n A 1 134 PRO 134 306 306 PRO PRO A . n A 1 135 ALA 135 307 307 ALA ALA A . n A 1 136 ARG 136 308 308 ARG ARG A . n A 1 137 VAL 137 309 309 VAL VAL A . n A 1 138 LEU 138 310 310 LEU LEU A . n A 1 139 THR 139 311 311 THR THR A . n A 1 140 GLN 140 312 312 GLN GLN A . n A 1 141 HIS 141 313 313 HIS HIS A . n A 1 142 TYR 142 314 314 TYR TYR A . n A 1 143 VAL 143 315 315 VAL VAL A . n A 1 144 SER 144 316 316 SER SER A . n A 1 145 LEU 145 317 317 LEU LEU A . n A 1 146 PHE 146 318 318 PHE PHE A . n A 1 147 GLY 147 319 319 GLY GLY A . n A 1 148 ILE 148 320 320 ILE ILE A . n A 1 149 ALA 149 321 321 ALA ALA A . n A 1 150 LYS 150 322 322 LYS LYS A . n A 1 151 GLU 151 323 323 GLU GLU A . n A 1 152 GLN 152 324 324 GLN GLN A . n A 1 153 TYR 153 325 325 TYR TYR A . n A 1 154 LYS 154 326 326 LYS LYS A . n A 1 155 LYS 155 327 327 LYS LYS A . n A 1 156 TYR 156 328 328 TYR TYR A . n A 1 157 ALA 157 329 329 ALA ALA A . n A 1 158 GLU 158 330 330 GLU GLU A . n A 1 159 TRP 159 331 331 TRP TRP A . n A 1 160 LEU 160 332 332 LEU LEU A . n A 1 161 LYS 161 333 333 LYS LYS A . n A 1 162 GLY 162 334 334 GLY GLY A . n A 1 163 VAL 163 335 ? ? ? A . n A 1 164 HIS 164 336 ? ? ? A . n A 1 165 HIS 165 337 ? ? ? A . n A 1 166 HIS 166 338 ? ? ? A . n A 1 167 HIS 167 339 ? ? ? A . n A 1 168 HIS 168 340 ? ? ? A . n A 1 169 HIS 169 341 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 401 1 PO4 PO4 A . C 3 HOH 1 501 2 HOH HOH A . C 3 HOH 2 502 3 HOH HOH A . C 3 HOH 3 503 4 HOH HOH A . C 3 HOH 4 504 5 HOH HOH A . C 3 HOH 5 505 7 HOH HOH A . C 3 HOH 6 506 8 HOH HOH A . C 3 HOH 7 507 9 HOH HOH A . C 3 HOH 8 508 10 HOH HOH A . C 3 HOH 9 509 11 HOH HOH A . C 3 HOH 10 510 12 HOH HOH A . C 3 HOH 11 511 13 HOH HOH A . C 3 HOH 12 512 14 HOH HOH A . C 3 HOH 13 513 15 HOH HOH A . C 3 HOH 14 514 16 HOH HOH A . C 3 HOH 15 515 17 HOH HOH A . C 3 HOH 16 516 342 HOH HOH A . C 3 HOH 17 517 343 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-16 2 'Structure model' 1 1 2012-07-25 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 18.2587 17.0618 1.2491 0.2263 0.2637 0.2374 0.0016 -0.0660 0.0700 3.4759 2.1833 3.9899 -1.4460 1.6317 -2.1610 0.2037 0.0957 -0.2393 -0.1593 -0.2462 0.0563 0.4064 0.1302 0.0425 'X-RAY DIFFRACTION' 2 ? refined 1.8797 22.6549 6.4530 0.1160 0.3450 0.2145 -0.0095 0.0220 0.1385 7.0582 3.9663 6.1450 -0.9400 1.4088 -1.3799 -0.0774 -0.3195 -0.1207 0.1795 0.3908 0.3498 -0.1058 -0.4316 -0.3134 'X-RAY DIFFRACTION' 3 ? refined -0.2122 34.5088 5.1862 0.5419 0.5332 0.2803 -0.1304 -0.0633 -0.0075 5.1766 32.0989 3.1170 -12.8494 4.0065 -9.8985 -0.2514 -0.0655 0.2707 0.1444 0.0958 -0.6992 -0.2307 -0.0050 0.1557 'X-RAY DIFFRACTION' 4 ? refined 12.8825 18.7830 10.1428 0.3068 0.2532 0.2856 -0.0231 -0.0784 0.1097 4.2847 0.1633 4.1260 -0.5621 2.2309 -0.7621 -0.2594 -0.4903 -0.0646 0.0571 0.0971 0.0397 -0.3019 -0.1727 0.1623 'X-RAY DIFFRACTION' 5 ? refined 20.1791 23.5081 -1.1197 0.1815 0.4022 0.2033 -0.0190 -0.0267 0.0277 6.8185 3.4335 7.7241 0.0207 6.2667 -2.5738 0.0741 0.4095 0.0325 0.0894 -0.3020 -0.2211 -0.0451 0.5978 0.2279 'X-RAY DIFFRACTION' 6 ? refined 2.0114 33.2072 -5.3289 0.2186 0.2595 0.2868 -0.0071 -0.0913 0.0741 6.1199 1.6485 4.7861 -2.8777 -3.3525 0.6518 0.1396 0.1315 0.2013 0.0069 -0.0751 -0.0708 -0.2957 0.0759 -0.0644 'X-RAY DIFFRACTION' 7 ? refined 0.7093 23.0852 -7.9168 0.1751 0.2767 0.2565 -0.0042 -0.1222 0.0375 6.8785 6.7826 2.2005 -4.6451 0.0395 0.5230 0.2091 0.0675 -0.4096 -0.2102 -0.1644 0.4226 0.1022 -0.0853 -0.0447 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 176 ? ? A 210 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 211 ? ? A 238 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 239 ? ? A 248 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 249 ? ? A 268 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 269 ? ? A 290 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 291 ? ? A 312 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 313 ? ? A 334 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' ICE ? 1 AutoSol phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 173 ? A ASN 1 2 1 Y 1 A ALA 174 ? A ALA 2 3 1 Y 1 A ASP 175 ? A ASP 3 4 1 Y 1 A VAL 335 ? A VAL 163 5 1 Y 1 A HIS 336 ? A HIS 164 6 1 Y 1 A HIS 337 ? A HIS 165 7 1 Y 1 A HIS 338 ? A HIS 166 8 1 Y 1 A HIS 339 ? A HIS 167 9 1 Y 1 A HIS 340 ? A HIS 168 10 1 Y 1 A HIS 341 ? A HIS 169 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #