data_3UXW # _entry.id 3UXW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UXW pdb_00003uxw 10.2210/pdb3uxw/pdb NDB NA1516 ? ? RCSB RCSB069346 ? ? WWPDB D_1000069346 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-23 2 'Structure model' 1 1 2013-03-27 3 'Structure model' 1 2 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UXW _pdbx_database_status.recvd_initial_deposition_date 2011-12-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fonfria-Subiros, E.' 1 'Acosta-Reyes, F.J.' 2 'Saperas, N.' 3 'Pous, J.' 4 'Subirana, J.A.' 5 'Campos, J.L.' 6 # _citation.id primary _citation.title 'Crystal structure of a complex of DNA with one AT-hook of HMGA1.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e37120 _citation.page_last e37120 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22615915 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0037120 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fonfria-Subiros, E.' 1 ? primary 'Acosta-Reyes, F.' 2 ? primary 'Saperas, N.' 3 ? primary 'Pous, J.' 4 ? primary 'Subirana, J.A.' 5 ? primary 'Campos, J.L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'dodecamer DNA' 3661.416 8 ? ? ? ? 2 polymer syn 'A-T hook peptide' 1126.425 4 ? ? ? ? 3 water nat water 18.015 59 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DA)(DT)(DT)(DA)(DA)(DT)(DT)(DC)(DG)' CGAATTAATTCG A,B,C,D,E,F,G,H ? 2 'polypeptide(L)' no yes 'RKPRGRPKK(NH2)' RKPRGRPKKX K,L,M,N ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DA n 1 5 DT n 1 6 DT n 1 7 DA n 1 8 DA n 1 9 DT n 1 10 DT n 1 11 DC n 1 12 DG n 2 1 ARG n 2 2 LYS n 2 3 PRO n 2 4 ARG n 2 5 GLY n 2 6 ARG n 2 7 PRO n 2 8 LYS n 2 9 LYS n 2 10 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Phosphoramidite method' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DA 4 4 4 DA DA B . n B 1 5 DT 5 5 5 DT DT B . n B 1 6 DT 6 6 6 DT DT B . n B 1 7 DA 7 7 7 DA DA B . n B 1 8 DA 8 8 8 DA DA B . n B 1 9 DT 9 9 9 DT DT B . n B 1 10 DT 10 10 10 DT DT B . n B 1 11 DC 11 11 11 DC DC B . n B 1 12 DG 12 12 12 DG DG B . n C 1 1 DC 1 1 1 DC DC C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DA 3 3 3 DA DA C . n C 1 4 DA 4 4 4 DA DA C . n C 1 5 DT 5 5 5 DT DT C . n C 1 6 DT 6 6 6 DT DT C . n C 1 7 DA 7 7 7 DA DA C . n C 1 8 DA 8 8 8 DA DA C . n C 1 9 DT 9 9 9 DT DT C . n C 1 10 DT 10 10 10 DT DT C . n C 1 11 DC 11 11 11 DC DC C . n C 1 12 DG 12 12 12 DG DG C . n D 1 1 DC 1 1 1 DC DC D . n D 1 2 DG 2 2 2 DG DG D . n D 1 3 DA 3 3 3 DA DA D . n D 1 4 DA 4 4 4 DA DA D . n D 1 5 DT 5 5 5 DT DT D . n D 1 6 DT 6 6 6 DT DT D . n D 1 7 DA 7 7 7 DA DA D . n D 1 8 DA 8 8 8 DA DA D . n D 1 9 DT 9 9 9 DT DT D . n D 1 10 DT 10 10 10 DT DT D . n D 1 11 DC 11 11 11 DC DC D . n D 1 12 DG 12 12 12 DG DG D . n E 1 1 DC 1 1 1 DC DC E . n E 1 2 DG 2 2 2 DG DG E . n E 1 3 DA 3 3 3 DA DA E . n E 1 4 DA 4 4 4 DA DA E . n E 1 5 DT 5 5 5 DT DT E . n E 1 6 DT 6 6 6 DT DT E . n E 1 7 DA 7 7 7 DA DA E . n E 1 8 DA 8 8 8 DA DA E . n E 1 9 DT 9 9 9 DT DT E . n E 1 10 DT 10 10 10 DT DT E . n E 1 11 DC 11 11 11 DC DC E . n E 1 12 DG 12 12 12 DG DG E . n F 1 1 DC 1 1 1 DC DC F . n F 1 2 DG 2 2 2 DG DG F . n F 1 3 DA 3 3 3 DA DA F . n F 1 4 DA 4 4 4 DA DA F . n F 1 5 DT 5 5 5 DT DT F . n F 1 6 DT 6 6 6 DT DT F . n F 1 7 DA 7 7 7 DA DA F . n F 1 8 DA 8 8 8 DA DA F . n F 1 9 DT 9 9 9 DT DT F . n F 1 10 DT 10 10 10 DT DT F . n F 1 11 DC 11 11 11 DC DC F . n F 1 12 DG 12 12 12 DG DG F . n G 1 1 DC 1 1 1 DC DC G . n G 1 2 DG 2 2 2 DG DG G . n G 1 3 DA 3 3 3 DA DA G . n G 1 4 DA 4 4 4 DA DA G . n G 1 5 DT 5 5 5 DT DT G . n G 1 6 DT 6 6 6 DT DT G . n G 1 7 DA 7 7 7 DA DA G . n G 1 8 DA 8 8 8 DA DA G . n G 1 9 DT 9 9 9 DT DT G . n G 1 10 DT 10 10 10 DT DT G . n G 1 11 DC 11 11 11 DC DC G . n G 1 12 DG 12 12 12 DG DG G . n H 1 1 DC 1 1 1 DC DC H . n H 1 2 DG 2 2 2 DG DG H . n H 1 3 DA 3 3 3 DA DA H . n H 1 4 DA 4 4 4 DA DA H . n H 1 5 DT 5 5 5 DT DT H . n H 1 6 DT 6 6 6 DT DT H . n H 1 7 DA 7 7 7 DA DA H . n H 1 8 DA 8 8 8 DA DA H . n H 1 9 DT 9 9 9 DT DT H . n H 1 10 DT 10 10 10 DT DT H . n H 1 11 DC 11 11 11 DC DC H . n H 1 12 DG 12 12 12 DG DG H . n I 2 1 ARG 1 33 33 ARG ARG K . n I 2 2 LYS 2 34 34 LYS LYS K . n I 2 3 PRO 3 35 35 PRO PRO K . n I 2 4 ARG 4 36 36 ARG ARG K . n I 2 5 GLY 5 37 37 GLY GLY K . n I 2 6 ARG 6 38 38 ARG ARG K . n I 2 7 PRO 7 39 39 PRO PRO K . n I 2 8 LYS 8 40 40 LYS LYS K . n I 2 9 LYS 9 41 41 LYS LYS K . n I 2 10 NH2 10 42 42 NH2 NH2 K . n J 2 1 ARG 1 33 ? ? ? L . n J 2 2 LYS 2 34 34 LYS LYS L . n J 2 3 PRO 3 35 35 PRO PRO L . n J 2 4 ARG 4 36 36 ARG ARG L . n J 2 5 GLY 5 37 37 GLY GLY L . n J 2 6 ARG 6 38 38 ARG ARG L . n J 2 7 PRO 7 39 39 PRO PRO L . n J 2 8 LYS 8 40 40 LYS LYS L . n J 2 9 LYS 9 41 41 LYS LYS L . n J 2 10 NH2 10 42 42 NH2 NH2 L . n K 2 1 ARG 1 33 33 ARG ARG M . n K 2 2 LYS 2 34 34 LYS LYS M . n K 2 3 PRO 3 35 35 PRO PRO M . n K 2 4 ARG 4 36 36 ARG ARG M . n K 2 5 GLY 5 37 37 GLY GLY M . n K 2 6 ARG 6 38 38 ARG ARG M . n K 2 7 PRO 7 39 39 PRO PRO M . n K 2 8 LYS 8 40 40 LYS LYS M . n K 2 9 LYS 9 41 41 LYS LYS M . n K 2 10 NH2 10 42 42 NH2 NH2 M . n L 2 1 ARG 1 33 ? ? ? N . n L 2 2 LYS 2 34 34 LYS LYS N . n L 2 3 PRO 3 35 35 PRO PRO N . n L 2 4 ARG 4 36 36 ARG ARG N . n L 2 5 GLY 5 37 37 GLY GLY N . n L 2 6 ARG 6 38 38 ARG ARG N . n L 2 7 PRO 7 39 39 PRO PRO N . n L 2 8 LYS 8 40 40 LYS LYS N . n L 2 9 LYS 9 41 41 LYS LYS N . n L 2 10 NH2 10 42 42 NH2 NH2 N . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 HOH 1 101 1 HOH HOH A . M 3 HOH 2 102 7 HOH HOH A . M 3 HOH 3 103 24 HOH HOH A . M 3 HOH 4 104 27 HOH HOH A . M 3 HOH 5 105 54 HOH HOH A . N 3 HOH 1 101 6 HOH HOH B . N 3 HOH 2 102 18 HOH HOH B . N 3 HOH 3 103 19 HOH HOH B . N 3 HOH 4 104 20 HOH HOH B . N 3 HOH 5 105 32 HOH HOH B . N 3 HOH 6 106 33 HOH HOH B . N 3 HOH 7 107 34 HOH HOH B . N 3 HOH 8 108 41 HOH HOH B . N 3 HOH 9 109 52 HOH HOH B . N 3 HOH 10 110 53 HOH HOH B . O 3 HOH 1 101 5 HOH HOH C . O 3 HOH 2 102 12 HOH HOH C . O 3 HOH 3 103 14 HOH HOH C . O 3 HOH 4 104 15 HOH HOH C . O 3 HOH 5 105 48 HOH HOH C . O 3 HOH 6 106 60 HOH HOH C . P 3 HOH 1 101 4 HOH HOH D . P 3 HOH 2 102 8 HOH HOH D . P 3 HOH 3 103 10 HOH HOH D . P 3 HOH 4 104 11 HOH HOH D . P 3 HOH 5 105 13 HOH HOH D . P 3 HOH 6 106 16 HOH HOH D . P 3 HOH 7 107 21 HOH HOH D . P 3 HOH 8 108 36 HOH HOH D . P 3 HOH 9 109 40 HOH HOH D . P 3 HOH 10 110 49 HOH HOH D . P 3 HOH 11 111 57 HOH HOH D . P 3 HOH 12 112 59 HOH HOH D . Q 3 HOH 1 101 30 HOH HOH E . Q 3 HOH 2 102 45 HOH HOH E . Q 3 HOH 3 103 56 HOH HOH E . R 3 HOH 1 101 23 HOH HOH F . R 3 HOH 2 102 39 HOH HOH F . R 3 HOH 3 103 50 HOH HOH F . R 3 HOH 4 104 55 HOH HOH F . S 3 HOH 1 101 3 HOH HOH G . S 3 HOH 2 102 9 HOH HOH G . S 3 HOH 3 103 17 HOH HOH G . S 3 HOH 4 104 35 HOH HOH G . S 3 HOH 5 105 42 HOH HOH G . S 3 HOH 6 106 43 HOH HOH G . S 3 HOH 7 107 44 HOH HOH G . S 3 HOH 8 108 58 HOH HOH G . T 3 HOH 1 101 2 HOH HOH H . T 3 HOH 2 102 46 HOH HOH H . T 3 HOH 3 103 47 HOH HOH H . U 3 HOH 1 101 26 HOH HOH K . V 3 HOH 1 101 22 HOH HOH L . V 3 HOH 2 102 29 HOH HOH L . V 3 HOH 3 103 31 HOH HOH L . W 3 HOH 1 101 28 HOH HOH M . W 3 HOH 2 102 37 HOH HOH M . W 3 HOH 3 103 51 HOH HOH M . X 3 HOH 1 101 25 HOH HOH N . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 L LYS 34 ? CD ? J LYS 2 CD 2 1 Y 0 L LYS 34 ? CE ? J LYS 2 CE 3 1 Y 0 L LYS 34 ? NZ ? J LYS 2 NZ 4 1 Y 0 M ARG 33 ? CG ? K ARG 1 CG 5 1 Y 0 M ARG 33 ? CD ? K ARG 1 CD 6 1 Y 0 M ARG 33 ? NE ? K ARG 1 NE 7 1 Y 0 M ARG 33 ? CZ ? K ARG 1 CZ 8 1 Y 0 M ARG 33 ? NH1 ? K ARG 1 NH1 9 1 Y 0 M ARG 33 ? NH2 ? K ARG 1 NH2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3UXW _cell.length_a 49.143 _cell.length_b 66.855 _cell.length_c 50.052 _cell.angle_alpha 90.00 _cell.angle_beta 111.40 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UXW _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3UXW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 45.70 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 278 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'MPD, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2011-05-06 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97950 # _reflns.entry_id 3UXW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40 _reflns.d_resolution_high 2.00 _reflns.number_obs 19462 _reflns.number_all ? _reflns.percent_possible_obs 94.3 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2 2.03 56.4 ? ? ? ? ? ? ? ? ? ? 1 1 2.03 2.07 70.1 ? ? ? ? ? ? ? ? ? ? 2 1 2.07 2.11 86.8 ? ? ? ? ? ? ? ? ? ? 3 1 2.11 2.15 93.7 ? ? ? ? ? ? ? ? ? ? 4 1 2.15 2.20 97.2 ? ? ? ? ? ? ? ? ? ? 5 1 2.20 2.25 97.7 ? ? ? ? ? ? ? ? ? ? 6 1 2.25 2.31 98.2 ? ? ? ? ? ? ? ? ? ? 7 1 2.31 2.37 98.5 ? ? ? ? ? ? ? ? ? ? 8 1 2.37 2.44 98.1 ? ? ? ? ? ? ? ? ? ? 9 1 2.44 2.52 98.7 ? ? ? ? ? ? ? ? ? ? 10 1 2.52 2.61 98.5 ? ? ? ? ? ? ? ? ? ? 11 1 2.61 2.71 98.6 ? ? ? ? ? ? ? ? ? ? 12 1 2.71 2.84 98.8 ? ? ? ? ? ? ? ? ? ? 13 1 2.84 2.99 99.0 ? ? ? ? ? ? ? ? ? ? 14 1 2.99 3.17 98.8 ? ? ? ? ? ? ? ? ? ? 15 1 3.17 3.42 98.6 ? ? ? ? ? ? ? ? ? ? 16 1 3.42 3.76 99.3 ? ? ? ? ? ? ? ? ? ? 17 1 3.76 4.31 99.4 ? ? ? ? ? ? ? ? ? ? 18 1 4.31 5.42 99.5 ? ? ? ? ? ? ? ? ? ? 19 1 5.42 40 98.3 ? ? ? ? ? ? ? ? ? ? 20 1 # _refine.entry_id 3UXW _refine.ls_number_reflns_obs 13163 _refine.ls_number_reflns_all 19462 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.76 _refine.ls_d_res_high 2.27 _refine.ls_percent_reflns_obs 98.76 _refine.ls_R_factor_obs 0.22266 _refine.ls_R_factor_R_work 0.21949 _refine.ls_R_factor_R_free 0.27710 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.3 _refine.ls_number_reflns_R_free 740 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 35.433 _refine.aniso_B[1][1] 3.33 _refine.aniso_B[2][2] -3.85 _refine.aniso_B[3][3] 1.18 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.90 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.385 _refine.pdbx_overall_ESU_R_Free 0.268 _refine.overall_SU_ML 0.184 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 7.441 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_all ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 294 _refine_hist.pdbx_number_atoms_nucleic_acid 1944 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 59 _refine_hist.number_atoms_total 2297 _refine_hist.d_res_high 2.27 _refine_hist.d_res_low 37.76 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.012 ? 2461 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.221 1.437 ? 3710 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7.964 5.000 ? 30 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 0.670 10.000 ? 9 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 23.246 15.000 ? 72 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10.698 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.103 0.200 ? 318 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.014 0.021 ? 1205 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.270 _refine_ls_shell.d_res_low 2.329 _refine_ls_shell.number_reflns_R_work 947 _refine_ls_shell.R_factor_R_work 0.321 _refine_ls_shell.percent_reflns_obs 98.12 _refine_ls_shell.R_factor_R_free 0.387 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3UXW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3UXW _struct.title 'Crystal Structures of an A-T-hook/DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UXW _struct_keywords.pdbx_keywords DNA/PEPTIDE _struct_keywords.text 'A-T hook-DNA complex, oligonucletide duplex HMGA-1a protein, DNA-PEPTIDE complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 3 ? V N N 3 ? W N N 3 ? X N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 PDB 3UXW 3UXW 1 CGAATTAATTCG ? ? 2 PDB 3UXW 3UXW 2 RKPRGRPKKX ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UXW A 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 2 1 3UXW B 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 3 1 3UXW C 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 4 1 3UXW D 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 5 1 3UXW E 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 6 1 3UXW F 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 7 1 3UXW G 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 8 1 3UXW H 1 ? 12 ? 3UXW 1 ? 12 ? 1 12 9 2 3UXW K 1 ? 10 ? 3UXW 33 ? 42 ? 33 42 10 2 3UXW L 1 ? 10 ? 3UXW 33 ? 42 ? 33 42 11 2 3UXW M 1 ? 10 ? 3UXW 33 ? 42 ? 33 42 12 2 3UXW N 1 ? 10 ? 3UXW 33 ? 42 ? 33 42 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 3 author_and_software_defined_assembly PISA trimeric 3 4 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2450 ? 1 MORE -3 ? 1 'SSA (A^2)' 4660 ? 2 'ABSA (A^2)' 2470 ? 2 MORE -2 ? 2 'SSA (A^2)' 4860 ? 3 'ABSA (A^2)' 2480 ? 3 MORE -5 ? 3 'SSA (A^2)' 4940 ? 4 'ABSA (A^2)' 2420 ? 4 MORE -5 ? 4 'SSA (A^2)' 4740 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,L,M,N,X 2 1 C,D,K,O,P,W 3 1 E,F,I,Q,R,U 4 1 G,H,J,S,T,V # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? I LYS 9 C ? ? ? 1_555 I NH2 10 N ? ? K LYS 41 K NH2 42 1_555 ? ? ? ? ? ? ? 1.409 ? ? covale2 covale both ? J LYS 9 C ? ? ? 1_555 J NH2 10 N ? ? L LYS 41 L NH2 42 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale3 covale both ? K LYS 9 C ? ? ? 1_555 K NH2 10 N ? ? M LYS 41 M NH2 42 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? L LYS 9 C ? ? ? 1_555 L NH2 10 N ? ? N LYS 41 N NH2 42 1_555 ? ? ? ? ? ? ? 1.285 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 3 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 5 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 5 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 6 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 6 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 7 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 7 B DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 8 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 9 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 9 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DC 1 N3 ? ? ? 1_555 D DG 12 N1 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DC 1 N4 ? ? ? 1_555 D DG 12 O6 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 1 O2 ? ? ? 1_555 D DG 12 N2 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 11 N3 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 11 O2 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 11 N4 ? ? C DG 2 D DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DA 4 N1 ? ? ? 1_555 D DT 9 N3 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DA 4 N6 ? ? ? 1_555 D DT 9 O4 ? ? C DA 4 D DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DT 5 N3 ? ? ? 1_555 D DA 8 N1 ? ? C DT 5 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DT 5 O4 ? ? ? 1_555 D DA 8 N6 ? ? C DT 5 D DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DT 6 N3 ? ? ? 1_555 D DA 7 N1 ? ? C DT 6 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DT 6 O4 ? ? ? 1_555 D DA 7 N6 ? ? C DT 6 D DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DA 7 N1 ? ? ? 1_555 D DT 6 N3 ? ? C DA 7 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DT 6 O4 ? ? C DA 7 D DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DA 8 N1 ? ? ? 1_555 D DT 5 N3 ? ? C DA 8 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DA 8 N6 ? ? ? 1_555 D DT 5 O4 ? ? C DA 8 D DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DT 9 N3 ? ? ? 1_555 D DA 4 N1 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DT 9 O4 ? ? ? 1_555 D DA 4 N6 ? ? C DT 9 D DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 10 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 10 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 11 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DG 12 N1 ? ? ? 1_555 D DC 1 N3 ? ? C DG 12 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DG 12 N2 ? ? ? 1_555 D DC 1 O2 ? ? C DG 12 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DG 12 O6 ? ? ? 1_555 D DC 1 N4 ? ? C DG 12 D DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DC 1 N3 ? ? ? 1_555 F DG 12 N1 ? ? E DC 1 F DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DC 1 N4 ? ? ? 1_555 F DG 12 O6 ? ? E DC 1 F DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DC 1 O2 ? ? ? 1_555 F DG 12 N2 ? ? E DC 1 F DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DG 2 N1 ? ? ? 1_555 F DC 11 N3 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? E DG 2 N2 ? ? ? 1_555 F DC 11 O2 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? E DG 2 O6 ? ? ? 1_555 F DC 11 N4 ? ? E DG 2 F DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? E DA 3 N1 ? ? ? 1_555 F DT 10 N3 ? ? E DA 3 F DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? E DA 3 N6 ? ? ? 1_555 F DT 10 O4 ? ? E DA 3 F DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? E DA 4 N1 ? ? ? 1_555 F DT 9 N3 ? ? E DA 4 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? E DA 4 N6 ? ? ? 1_555 F DT 9 O4 ? ? E DA 4 F DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? E DT 5 N3 ? ? ? 1_555 F DA 8 N1 ? ? E DT 5 F DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? E DT 5 O4 ? ? ? 1_555 F DA 8 N6 ? ? E DT 5 F DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E DT 6 N3 ? ? ? 1_555 F DA 7 N1 ? ? E DT 6 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E DT 6 O4 ? ? ? 1_555 F DA 7 N6 ? ? E DT 6 F DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E DA 7 N1 ? ? ? 1_555 F DT 6 N3 ? ? E DA 7 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E DA 7 N6 ? ? ? 1_555 F DT 6 O4 ? ? E DA 7 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E DA 8 N1 ? ? ? 1_555 F DT 5 N3 ? ? E DA 8 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E DA 8 N6 ? ? ? 1_555 F DT 5 O4 ? ? E DA 8 F DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E DT 9 N3 ? ? ? 1_555 F DA 4 N1 ? ? E DT 9 F DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E DT 9 O4 ? ? ? 1_555 F DA 4 N6 ? ? E DT 9 F DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E DT 10 N3 ? ? ? 1_555 F DA 3 N1 ? ? E DT 10 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E DT 10 O4 ? ? ? 1_555 F DA 3 N6 ? ? E DT 10 F DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E DC 11 N3 ? ? ? 1_555 F DG 2 N1 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E DC 11 N4 ? ? ? 1_555 F DG 2 O6 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E DC 11 O2 ? ? ? 1_555 F DG 2 N2 ? ? E DC 11 F DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E DG 12 N1 ? ? ? 1_555 F DC 1 N3 ? ? E DG 12 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E DG 12 N2 ? ? ? 1_555 F DC 1 O2 ? ? E DG 12 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? E DG 12 O6 ? ? ? 1_555 F DC 1 N4 ? ? E DG 12 F DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? G DC 1 N3 ? ? ? 1_555 H DG 12 N1 ? ? G DC 1 H DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? G DC 1 N4 ? ? ? 1_555 H DG 12 O6 ? ? G DC 1 H DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? G DC 1 O2 ? ? ? 1_555 H DG 12 N2 ? ? G DC 1 H DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? G DG 2 N1 ? ? ? 1_555 H DC 11 N3 ? ? G DG 2 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? G DG 2 N2 ? ? ? 1_555 H DC 11 O2 ? ? G DG 2 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? G DG 2 O6 ? ? ? 1_555 H DC 11 N4 ? ? G DG 2 H DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? G DA 3 N1 ? ? ? 1_555 H DT 10 N3 ? ? G DA 3 H DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? G DA 3 N6 ? ? ? 1_555 H DT 10 O4 ? ? G DA 3 H DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? G DA 4 N1 ? ? ? 1_555 H DT 9 N3 ? ? G DA 4 H DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? G DA 4 N6 ? ? ? 1_555 H DT 9 O4 ? ? G DA 4 H DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? G DT 5 N3 ? ? ? 1_555 H DA 8 N1 ? ? G DT 5 H DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? G DT 5 O4 ? ? ? 1_555 H DA 8 N6 ? ? G DT 5 H DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? G DT 6 N3 ? ? ? 1_555 H DA 7 N1 ? ? G DT 6 H DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? G DT 6 O4 ? ? ? 1_555 H DA 7 N6 ? ? G DT 6 H DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? G DA 7 N1 ? ? ? 1_555 H DT 6 N3 ? ? G DA 7 H DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? G DA 7 N6 ? ? ? 1_555 H DT 6 O4 ? ? G DA 7 H DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? G DA 8 N1 ? ? ? 1_555 H DT 5 N3 ? ? G DA 8 H DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? G DA 8 N6 ? ? ? 1_555 H DT 5 O4 ? ? G DA 8 H DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? G DT 9 N3 ? ? ? 1_555 H DA 4 N1 ? ? G DT 9 H DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? G DT 9 O4 ? ? ? 1_555 H DA 4 N6 ? ? G DT 9 H DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? G DT 10 N3 ? ? ? 1_555 H DA 3 N1 ? ? G DT 10 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? G DT 10 O4 ? ? ? 1_555 H DA 3 N6 ? ? G DT 10 H DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? G DC 11 N3 ? ? ? 1_555 H DG 2 N1 ? ? G DC 11 H DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? G DC 11 N4 ? ? ? 1_555 H DG 2 O6 ? ? G DC 11 H DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? G DC 11 O2 ? ? ? 1_555 H DG 2 N2 ? ? G DC 11 H DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? G DG 12 N1 ? ? ? 1_555 H DC 1 N3 ? ? G DG 12 H DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? G DG 12 N2 ? ? ? 1_555 H DC 1 O2 ? ? G DG 12 H DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? G DG 12 O6 ? ? ? 1_555 H DC 1 N4 ? ? G DG 12 H DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 I 10 ? LYS I 9 ? NH2 K 42 ? 1_555 LYS K 41 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 2 NH2 J 10 ? LYS J 9 ? NH2 L 42 ? 1_555 LYS L 41 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 3 NH2 K 10 ? LYS K 9 ? NH2 M 42 ? 1_555 LYS M 41 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 4 NH2 L 10 ? LYS L 9 ? NH2 N 42 ? 1_555 LYS N 41 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' # _pdbx_entry_details.entry_id 3UXW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 DT _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 DT _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 DT _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 103.44 _pdbx_validate_rmsd_angle.angle_target_value 110.10 _pdbx_validate_rmsd_angle.angle_deviation -6.66 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L ARG 33 ? J ARG 1 2 1 Y 1 N ARG 33 ? L ARG 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 DA OP3 O N N 28 DA P P N N 29 DA OP1 O N N 30 DA OP2 O N N 31 DA "O5'" O N N 32 DA "C5'" C N N 33 DA "C4'" C N R 34 DA "O4'" O N N 35 DA "C3'" C N S 36 DA "O3'" O N N 37 DA "C2'" C N N 38 DA "C1'" C N R 39 DA N9 N Y N 40 DA C8 C Y N 41 DA N7 N Y N 42 DA C5 C Y N 43 DA C6 C Y N 44 DA N6 N N N 45 DA N1 N Y N 46 DA C2 C Y N 47 DA N3 N Y N 48 DA C4 C Y N 49 DA HOP3 H N N 50 DA HOP2 H N N 51 DA "H5'" H N N 52 DA "H5''" H N N 53 DA "H4'" H N N 54 DA "H3'" H N N 55 DA "HO3'" H N N 56 DA "H2'" H N N 57 DA "H2''" H N N 58 DA "H1'" H N N 59 DA H8 H N N 60 DA H61 H N N 61 DA H62 H N N 62 DA H2 H N N 63 DC OP3 O N N 64 DC P P N N 65 DC OP1 O N N 66 DC OP2 O N N 67 DC "O5'" O N N 68 DC "C5'" C N N 69 DC "C4'" C N R 70 DC "O4'" O N N 71 DC "C3'" C N S 72 DC "O3'" O N N 73 DC "C2'" C N N 74 DC "C1'" C N R 75 DC N1 N N N 76 DC C2 C N N 77 DC O2 O N N 78 DC N3 N N N 79 DC C4 C N N 80 DC N4 N N N 81 DC C5 C N N 82 DC C6 C N N 83 DC HOP3 H N N 84 DC HOP2 H N N 85 DC "H5'" H N N 86 DC "H5''" H N N 87 DC "H4'" H N N 88 DC "H3'" H N N 89 DC "HO3'" H N N 90 DC "H2'" H N N 91 DC "H2''" H N N 92 DC "H1'" H N N 93 DC H41 H N N 94 DC H42 H N N 95 DC H5 H N N 96 DC H6 H N N 97 DG OP3 O N N 98 DG P P N N 99 DG OP1 O N N 100 DG OP2 O N N 101 DG "O5'" O N N 102 DG "C5'" C N N 103 DG "C4'" C N R 104 DG "O4'" O N N 105 DG "C3'" C N S 106 DG "O3'" O N N 107 DG "C2'" C N N 108 DG "C1'" C N R 109 DG N9 N Y N 110 DG C8 C Y N 111 DG N7 N Y N 112 DG C5 C Y N 113 DG C6 C N N 114 DG O6 O N N 115 DG N1 N N N 116 DG C2 C N N 117 DG N2 N N N 118 DG N3 N N N 119 DG C4 C Y N 120 DG HOP3 H N N 121 DG HOP2 H N N 122 DG "H5'" H N N 123 DG "H5''" H N N 124 DG "H4'" H N N 125 DG "H3'" H N N 126 DG "HO3'" H N N 127 DG "H2'" H N N 128 DG "H2''" H N N 129 DG "H1'" H N N 130 DG H8 H N N 131 DG H1 H N N 132 DG H21 H N N 133 DG H22 H N N 134 DT OP3 O N N 135 DT P P N N 136 DT OP1 O N N 137 DT OP2 O N N 138 DT "O5'" O N N 139 DT "C5'" C N N 140 DT "C4'" C N R 141 DT "O4'" O N N 142 DT "C3'" C N S 143 DT "O3'" O N N 144 DT "C2'" C N N 145 DT "C1'" C N R 146 DT N1 N N N 147 DT C2 C N N 148 DT O2 O N N 149 DT N3 N N N 150 DT C4 C N N 151 DT O4 O N N 152 DT C5 C N N 153 DT C7 C N N 154 DT C6 C N N 155 DT HOP3 H N N 156 DT HOP2 H N N 157 DT "H5'" H N N 158 DT "H5''" H N N 159 DT "H4'" H N N 160 DT "H3'" H N N 161 DT "HO3'" H N N 162 DT "H2'" H N N 163 DT "H2''" H N N 164 DT "H1'" H N N 165 DT H3 H N N 166 DT H71 H N N 167 DT H72 H N N 168 DT H73 H N N 169 DT H6 H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 HOH O O N N 181 HOH H1 H N N 182 HOH H2 H N N 183 LYS N N N N 184 LYS CA C N S 185 LYS C C N N 186 LYS O O N N 187 LYS CB C N N 188 LYS CG C N N 189 LYS CD C N N 190 LYS CE C N N 191 LYS NZ N N N 192 LYS OXT O N N 193 LYS H H N N 194 LYS H2 H N N 195 LYS HA H N N 196 LYS HB2 H N N 197 LYS HB3 H N N 198 LYS HG2 H N N 199 LYS HG3 H N N 200 LYS HD2 H N N 201 LYS HD3 H N N 202 LYS HE2 H N N 203 LYS HE3 H N N 204 LYS HZ1 H N N 205 LYS HZ2 H N N 206 LYS HZ3 H N N 207 LYS HXT H N N 208 NH2 N N N N 209 NH2 HN1 H N N 210 NH2 HN2 H N N 211 PRO N N N N 212 PRO CA C N S 213 PRO C C N N 214 PRO O O N N 215 PRO CB C N N 216 PRO CG C N N 217 PRO CD C N N 218 PRO OXT O N N 219 PRO H H N N 220 PRO HA H N N 221 PRO HB2 H N N 222 PRO HB3 H N N 223 PRO HG2 H N N 224 PRO HG3 H N N 225 PRO HD2 H N N 226 PRO HD3 H N N 227 PRO HXT H N N 228 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 DA OP3 P sing N N 27 DA OP3 HOP3 sing N N 28 DA P OP1 doub N N 29 DA P OP2 sing N N 30 DA P "O5'" sing N N 31 DA OP2 HOP2 sing N N 32 DA "O5'" "C5'" sing N N 33 DA "C5'" "C4'" sing N N 34 DA "C5'" "H5'" sing N N 35 DA "C5'" "H5''" sing N N 36 DA "C4'" "O4'" sing N N 37 DA "C4'" "C3'" sing N N 38 DA "C4'" "H4'" sing N N 39 DA "O4'" "C1'" sing N N 40 DA "C3'" "O3'" sing N N 41 DA "C3'" "C2'" sing N N 42 DA "C3'" "H3'" sing N N 43 DA "O3'" "HO3'" sing N N 44 DA "C2'" "C1'" sing N N 45 DA "C2'" "H2'" sing N N 46 DA "C2'" "H2''" sing N N 47 DA "C1'" N9 sing N N 48 DA "C1'" "H1'" sing N N 49 DA N9 C8 sing Y N 50 DA N9 C4 sing Y N 51 DA C8 N7 doub Y N 52 DA C8 H8 sing N N 53 DA N7 C5 sing Y N 54 DA C5 C6 sing Y N 55 DA C5 C4 doub Y N 56 DA C6 N6 sing N N 57 DA C6 N1 doub Y N 58 DA N6 H61 sing N N 59 DA N6 H62 sing N N 60 DA N1 C2 sing Y N 61 DA C2 N3 doub Y N 62 DA C2 H2 sing N N 63 DA N3 C4 sing Y N 64 DC OP3 P sing N N 65 DC OP3 HOP3 sing N N 66 DC P OP1 doub N N 67 DC P OP2 sing N N 68 DC P "O5'" sing N N 69 DC OP2 HOP2 sing N N 70 DC "O5'" "C5'" sing N N 71 DC "C5'" "C4'" sing N N 72 DC "C5'" "H5'" sing N N 73 DC "C5'" "H5''" sing N N 74 DC "C4'" "O4'" sing N N 75 DC "C4'" "C3'" sing N N 76 DC "C4'" "H4'" sing N N 77 DC "O4'" "C1'" sing N N 78 DC "C3'" "O3'" sing N N 79 DC "C3'" "C2'" sing N N 80 DC "C3'" "H3'" sing N N 81 DC "O3'" "HO3'" sing N N 82 DC "C2'" "C1'" sing N N 83 DC "C2'" "H2'" sing N N 84 DC "C2'" "H2''" sing N N 85 DC "C1'" N1 sing N N 86 DC "C1'" "H1'" sing N N 87 DC N1 C2 sing N N 88 DC N1 C6 sing N N 89 DC C2 O2 doub N N 90 DC C2 N3 sing N N 91 DC N3 C4 doub N N 92 DC C4 N4 sing N N 93 DC C4 C5 sing N N 94 DC N4 H41 sing N N 95 DC N4 H42 sing N N 96 DC C5 C6 doub N N 97 DC C5 H5 sing N N 98 DC C6 H6 sing N N 99 DG OP3 P sing N N 100 DG OP3 HOP3 sing N N 101 DG P OP1 doub N N 102 DG P OP2 sing N N 103 DG P "O5'" sing N N 104 DG OP2 HOP2 sing N N 105 DG "O5'" "C5'" sing N N 106 DG "C5'" "C4'" sing N N 107 DG "C5'" "H5'" sing N N 108 DG "C5'" "H5''" sing N N 109 DG "C4'" "O4'" sing N N 110 DG "C4'" "C3'" sing N N 111 DG "C4'" "H4'" sing N N 112 DG "O4'" "C1'" sing N N 113 DG "C3'" "O3'" sing N N 114 DG "C3'" "C2'" sing N N 115 DG "C3'" "H3'" sing N N 116 DG "O3'" "HO3'" sing N N 117 DG "C2'" "C1'" sing N N 118 DG "C2'" "H2'" sing N N 119 DG "C2'" "H2''" sing N N 120 DG "C1'" N9 sing N N 121 DG "C1'" "H1'" sing N N 122 DG N9 C8 sing Y N 123 DG N9 C4 sing Y N 124 DG C8 N7 doub Y N 125 DG C8 H8 sing N N 126 DG N7 C5 sing Y N 127 DG C5 C6 sing N N 128 DG C5 C4 doub Y N 129 DG C6 O6 doub N N 130 DG C6 N1 sing N N 131 DG N1 C2 sing N N 132 DG N1 H1 sing N N 133 DG C2 N2 sing N N 134 DG C2 N3 doub N N 135 DG N2 H21 sing N N 136 DG N2 H22 sing N N 137 DG N3 C4 sing N N 138 DT OP3 P sing N N 139 DT OP3 HOP3 sing N N 140 DT P OP1 doub N N 141 DT P OP2 sing N N 142 DT P "O5'" sing N N 143 DT OP2 HOP2 sing N N 144 DT "O5'" "C5'" sing N N 145 DT "C5'" "C4'" sing N N 146 DT "C5'" "H5'" sing N N 147 DT "C5'" "H5''" sing N N 148 DT "C4'" "O4'" sing N N 149 DT "C4'" "C3'" sing N N 150 DT "C4'" "H4'" sing N N 151 DT "O4'" "C1'" sing N N 152 DT "C3'" "O3'" sing N N 153 DT "C3'" "C2'" sing N N 154 DT "C3'" "H3'" sing N N 155 DT "O3'" "HO3'" sing N N 156 DT "C2'" "C1'" sing N N 157 DT "C2'" "H2'" sing N N 158 DT "C2'" "H2''" sing N N 159 DT "C1'" N1 sing N N 160 DT "C1'" "H1'" sing N N 161 DT N1 C2 sing N N 162 DT N1 C6 sing N N 163 DT C2 O2 doub N N 164 DT C2 N3 sing N N 165 DT N3 C4 sing N N 166 DT N3 H3 sing N N 167 DT C4 O4 doub N N 168 DT C4 C5 sing N N 169 DT C5 C7 sing N N 170 DT C5 C6 doub N N 171 DT C7 H71 sing N N 172 DT C7 H72 sing N N 173 DT C7 H73 sing N N 174 DT C6 H6 sing N N 175 GLY N CA sing N N 176 GLY N H sing N N 177 GLY N H2 sing N N 178 GLY CA C sing N N 179 GLY CA HA2 sing N N 180 GLY CA HA3 sing N N 181 GLY C O doub N N 182 GLY C OXT sing N N 183 GLY OXT HXT sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 LYS N CA sing N N 187 LYS N H sing N N 188 LYS N H2 sing N N 189 LYS CA C sing N N 190 LYS CA CB sing N N 191 LYS CA HA sing N N 192 LYS C O doub N N 193 LYS C OXT sing N N 194 LYS CB CG sing N N 195 LYS CB HB2 sing N N 196 LYS CB HB3 sing N N 197 LYS CG CD sing N N 198 LYS CG HG2 sing N N 199 LYS CG HG3 sing N N 200 LYS CD CE sing N N 201 LYS CD HD2 sing N N 202 LYS CD HD3 sing N N 203 LYS CE NZ sing N N 204 LYS CE HE2 sing N N 205 LYS CE HE3 sing N N 206 LYS NZ HZ1 sing N N 207 LYS NZ HZ2 sing N N 208 LYS NZ HZ3 sing N N 209 LYS OXT HXT sing N N 210 NH2 N HN1 sing N N 211 NH2 N HN2 sing N N 212 PRO N CA sing N N 213 PRO N CD sing N N 214 PRO N H sing N N 215 PRO CA C sing N N 216 PRO CA CB sing N N 217 PRO CA HA sing N N 218 PRO C O doub N N 219 PRO C OXT sing N N 220 PRO CB CG sing N N 221 PRO CB HB2 sing N N 222 PRO CB HB3 sing N N 223 PRO CG CD sing N N 224 PRO CG HG2 sing N N 225 PRO CG HG3 sing N N 226 PRO CD HD2 sing N N 227 PRO CD HD3 sing N N 228 PRO OXT HXT sing N N 229 # _ndb_struct_conf_na.entry_id 3UXW _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.436 -0.332 0.044 -3.823 0.041 -4.754 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 0.189 -0.174 -0.155 -6.259 -16.163 -0.924 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DA 3 1_555 B DT 10 1_555 0.546 0.035 -0.201 -1.560 -5.393 -2.533 3 A_DA3:DT10_B A 3 ? B 10 ? 20 1 1 A DA 4 1_555 B DT 9 1_555 -0.212 -0.138 -0.031 1.162 -21.086 1.609 4 A_DA4:DT9_B A 4 ? B 9 ? 20 1 1 A DT 5 1_555 B DA 8 1_555 -0.124 0.039 -0.241 4.306 -10.247 4.027 5 A_DT5:DA8_B A 5 ? B 8 ? 20 1 1 A DT 6 1_555 B DA 7 1_555 -0.180 -0.029 -0.683 9.517 -10.633 4.133 6 A_DT6:DA7_B A 6 ? B 7 ? 20 1 1 A DA 7 1_555 B DT 6 1_555 0.111 -0.030 0.149 -0.988 -8.240 0.220 7 A_DA7:DT6_B A 7 ? B 6 ? 20 1 1 A DA 8 1_555 B DT 5 1_555 -0.173 -0.131 0.060 -1.383 -16.231 2.751 8 A_DA8:DT5_B A 8 ? B 5 ? 20 1 1 A DT 9 1_555 B DA 4 1_555 -0.035 0.043 0.277 -3.411 -20.232 1.377 9 A_DT9:DA4_B A 9 ? B 4 ? 20 1 1 A DT 10 1_555 B DA 3 1_555 -0.184 -0.038 -0.204 -4.379 -20.106 -2.452 10 A_DT10:DA3_B A 10 ? B 3 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 0.354 -0.219 -0.136 -0.935 -5.567 2.738 11 A_DC11:DG2_B A 11 ? B 2 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.011 0.077 0.019 0.085 -1.796 -2.846 12 A_DG12:DC1_B A 12 ? B 1 ? 19 1 1 C DC 1 1_555 D DG 12 1_555 0.320 -0.327 -0.037 -4.063 2.400 -5.262 13 C_DC1:DG12_D C 1 ? D 12 ? 19 1 1 C DG 2 1_555 D DC 11 1_555 -0.109 -0.137 -0.178 -6.550 -14.453 2.947 14 C_DG2:DC11_D C 2 ? D 11 ? 19 1 1 C DA 3 1_555 D DT 10 1_555 0.362 -0.036 -0.267 1.258 -11.680 -0.518 15 C_DA3:DT10_D C 3 ? D 10 ? 20 1 1 C DA 4 1_555 D DT 9 1_555 0.190 -0.061 0.039 4.037 -22.863 3.081 16 C_DA4:DT9_D C 4 ? D 9 ? 20 1 1 C DT 5 1_555 D DA 8 1_555 -0.080 0.094 -0.070 1.110 -11.088 1.982 17 C_DT5:DA8_D C 5 ? D 8 ? 20 1 1 C DT 6 1_555 D DA 7 1_555 -0.322 0.040 -0.790 10.604 -11.815 4.756 18 C_DT6:DA7_D C 6 ? D 7 ? 20 1 1 C DA 7 1_555 D DT 6 1_555 0.094 -0.153 0.029 3.216 -13.571 0.419 19 C_DA7:DT6_D C 7 ? D 6 ? 20 1 1 C DA 8 1_555 D DT 5 1_555 -0.007 0.001 0.012 -0.488 -13.619 3.520 20 C_DA8:DT5_D C 8 ? D 5 ? 20 1 1 C DT 9 1_555 D DA 4 1_555 0.147 -0.015 0.279 -1.394 -18.410 2.791 21 C_DT9:DA4_D C 9 ? D 4 ? 20 1 1 C DT 10 1_555 D DA 3 1_555 -0.156 -0.061 -0.022 -6.638 -17.328 -1.061 22 C_DT10:DA3_D C 10 ? D 3 ? 20 1 1 C DC 11 1_555 D DG 2 1_555 0.453 -0.341 -0.091 -5.138 -4.377 2.576 23 C_DC11:DG2_D C 11 ? D 2 ? 19 1 1 C DG 12 1_555 D DC 1 1_555 -0.238 -0.307 -0.410 0.597 0.196 -1.969 24 C_DG12:DC1_D C 12 ? D 1 ? 19 1 1 E DC 1 1_555 F DG 12 1_555 0.437 -0.004 -0.459 14.312 -2.323 -3.020 25 E_DC1:DG12_F E 1 ? F 12 ? 19 1 1 E DG 2 1_555 F DC 11 1_555 -0.231 -0.065 -0.383 -14.306 -19.158 1.526 26 E_DG2:DC11_F E 2 ? F 11 ? 19 1 1 E DA 3 1_555 F DT 10 1_555 -0.076 -0.182 -0.510 0.449 -15.936 -0.666 27 E_DA3:DT10_F E 3 ? F 10 ? 20 1 1 E DA 4 1_555 F DT 9 1_555 0.136 -0.027 0.088 6.004 -23.781 2.078 28 E_DA4:DT9_F E 4 ? F 9 ? 20 1 1 E DT 5 1_555 F DA 8 1_555 -0.256 0.016 -0.060 0.202 -15.241 5.589 29 E_DT5:DA8_F E 5 ? F 8 ? 20 1 1 E DT 6 1_555 F DA 7 1_555 -0.444 -0.087 -0.602 9.267 -6.367 1.306 30 E_DT6:DA7_F E 6 ? F 7 ? 20 1 1 E DA 7 1_555 F DT 6 1_555 -0.075 0.034 -0.512 -6.372 -11.409 2.576 31 E_DA7:DT6_F E 7 ? F 6 ? 20 1 1 E DA 8 1_555 F DT 5 1_555 -0.129 -0.118 -0.462 -6.805 -16.494 6.648 32 E_DA8:DT5_F E 8 ? F 5 ? 20 1 1 E DT 9 1_555 F DA 4 1_555 -0.414 0.117 0.273 -8.514 -17.708 1.205 33 E_DT9:DA4_F E 9 ? F 4 ? 20 1 1 E DT 10 1_555 F DA 3 1_555 0.407 0.013 0.370 -8.166 -21.241 0.541 34 E_DT10:DA3_F E 10 ? F 3 ? 20 1 1 E DC 11 1_555 F DG 2 1_555 0.250 -0.244 -0.068 -1.234 -15.013 0.595 35 E_DC11:DG2_F E 11 ? F 2 ? 19 1 1 E DG 12 1_555 F DC 1 1_555 0.009 -0.257 0.367 1.940 -10.217 -2.705 36 E_DG12:DC1_F E 12 ? F 1 ? 19 1 1 G DC 1 1_555 H DG 12 1_555 0.374 -0.112 -0.508 15.123 -3.635 -6.347 37 G_DC1:DG12_H G 1 ? H 12 ? 19 1 1 G DG 2 1_555 H DC 11 1_555 -0.259 -0.172 -0.421 -14.578 -16.332 4.317 38 G_DG2:DC11_H G 2 ? H 11 ? 19 1 1 G DA 3 1_555 H DT 10 1_555 -0.028 -0.122 -0.251 0.150 -11.690 -2.477 39 G_DA3:DT10_H G 3 ? H 10 ? 20 1 1 G DA 4 1_555 H DT 9 1_555 0.206 -0.156 0.225 7.083 -24.729 -2.405 40 G_DA4:DT9_H G 4 ? H 9 ? 20 1 1 G DT 5 1_555 H DA 8 1_555 -0.152 0.144 -0.105 0.074 -17.730 8.279 41 G_DT5:DA8_H G 5 ? H 8 ? 20 1 1 G DT 6 1_555 H DA 7 1_555 -0.078 -0.019 -0.496 9.333 -6.645 4.161 42 G_DT6:DA7_H G 6 ? H 7 ? 20 1 1 G DA 7 1_555 H DT 6 1_555 0.260 -0.173 -0.317 -2.419 -8.754 4.886 43 G_DA7:DT6_H G 7 ? H 6 ? 20 1 1 G DA 8 1_555 H DT 5 1_555 0.044 -0.037 0.045 -4.904 -16.530 7.758 44 G_DA8:DT5_H G 8 ? H 5 ? 20 1 1 G DT 9 1_555 H DA 4 1_555 -0.287 -0.023 0.198 -13.501 -16.200 0.401 45 G_DT9:DA4_H G 9 ? H 4 ? 20 1 1 G DT 10 1_555 H DA 3 1_555 0.033 -0.029 0.067 -8.475 -16.917 -0.993 46 G_DT10:DA3_H G 10 ? H 3 ? 20 1 1 G DC 11 1_555 H DG 2 1_555 0.247 -0.119 0.014 -2.976 -11.845 2.940 47 G_DC11:DG2_H G 11 ? H 2 ? 19 1 1 G DG 12 1_555 H DC 1 1_555 -0.162 -0.156 0.225 -4.359 -10.174 0.603 48 G_DG12:DC1_H G 12 ? H 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.030 0.315 3.488 2.475 1.502 37.736 0.279 0.293 3.493 2.318 -3.820 37.843 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 11 1_555 A DA 3 1_555 B DT 10 1_555 -0.193 0.271 3.168 -1.213 6.740 37.272 -0.427 0.145 3.172 10.438 1.879 37.874 2 AA_DG2DA3:DT10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DA 3 1_555 B DT 10 1_555 A DA 4 1_555 B DT 9 1_555 0.448 -0.252 3.283 -2.474 3.446 33.791 -0.977 -1.157 3.203 5.899 4.235 34.048 3 AA_DA3DA4:DT9DT10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DA 4 1_555 B DT 9 1_555 A DT 5 1_555 B DA 8 1_555 0.334 -0.533 3.126 1.256 -3.365 31.111 -0.373 -0.390 3.175 -6.248 -2.332 31.313 4 AA_DA4DT5:DA8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DT 5 1_555 B DA 8 1_555 A DT 6 1_555 B DA 7 1_555 0.788 0.271 3.066 8.168 6.461 32.847 -0.524 -0.090 3.162 11.083 -14.013 34.415 5 AA_DT5DT6:DA7DA8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DT 6 1_555 B DA 7 1_555 A DA 7 1_555 B DT 6 1_555 -0.154 -0.187 3.578 -4.570 7.971 33.717 -1.629 -0.500 3.438 13.435 7.703 34.911 6 AA_DT6DA7:DT6DA7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DA 7 1_555 B DT 6 1_555 A DA 8 1_555 B DT 5 1_555 -0.634 -0.409 3.159 -2.790 -2.086 38.114 -0.369 0.625 3.213 -3.186 4.261 38.267 7 AA_DA7DA8:DT5DT6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DA 8 1_555 B DT 5 1_555 A DT 9 1_555 B DA 4 1_555 -0.304 -0.553 3.289 -1.761 -8.240 35.659 0.283 0.235 3.341 -13.229 2.827 36.609 8 AA_DA8DT9:DA4DT5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DT 9 1_555 B DA 4 1_555 A DT 10 1_555 B DA 3 1_555 0.003 -0.119 3.145 4.397 -0.107 36.385 -0.175 0.575 3.124 -0.171 -7.009 36.641 9 AA_DT9DT10:DA3DA4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DT 10 1_555 B DA 3 1_555 A DC 11 1_555 B DG 2 1_555 0.844 0.906 3.329 0.227 5.176 36.045 0.704 -1.318 3.427 8.312 -0.365 36.403 10 AA_DT10DC11:DG2DA3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.119 0.575 3.386 -0.353 -2.380 39.843 1.125 0.132 3.348 -3.489 0.518 39.912 11 AA_DC11DG12:DC1DG2_BB A 11 ? B 2 ? A 12 ? B 1 ? 1 C DC 1 1_555 D DG 12 1_555 C DG 2 1_555 D DC 11 1_555 0.353 0.256 3.452 0.431 1.232 37.173 0.228 -0.493 3.462 1.932 -0.676 37.195 12 CC_DC1DG2:DC11DG12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 C DG 2 1_555 D DC 11 1_555 C DA 3 1_555 D DT 10 1_555 -0.335 0.340 3.198 -0.090 5.505 37.474 -0.173 0.506 3.215 8.513 0.139 37.862 13 CC_DG2DA3:DT10DC11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 C DA 3 1_555 D DT 10 1_555 C DA 4 1_555 D DT 9 1_555 0.190 -0.380 3.214 -3.709 6.935 35.283 -1.562 -0.814 3.052 11.269 6.026 36.122 14 CC_DA3DA4:DT9DT10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 C DA 4 1_555 D DT 9 1_555 C DT 5 1_555 D DA 8 1_555 0.383 -0.533 3.263 2.015 -2.283 29.597 -0.557 -0.322 3.312 -4.454 -3.932 29.750 15 CC_DA4DT5:DA8DT9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 C DT 5 1_555 D DA 8 1_555 C DT 6 1_555 D DA 7 1_555 0.704 0.188 2.912 10.107 7.853 32.940 -0.774 0.234 2.962 13.242 -17.045 35.275 16 CC_DT5DT6:DA7DA8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 C DT 6 1_555 D DA 7 1_555 C DA 7 1_555 D DT 6 1_555 -0.015 0.191 3.543 -4.748 5.907 35.287 -0.604 -0.709 3.501 9.608 7.722 36.066 17 CC_DT6DA7:DT6DA7_DD C 6 ? D 7 ? C 7 ? D 6 ? 1 C DA 7 1_555 D DT 6 1_555 C DA 8 1_555 D DT 5 1_555 -0.363 -0.313 3.273 -2.801 -0.636 39.280 -0.389 0.206 3.295 -0.944 4.160 39.381 18 CC_DA7DA8:DT5DT6_DD C 7 ? D 6 ? C 8 ? D 5 ? 1 C DA 8 1_555 D DT 5 1_555 C DT 9 1_555 D DA 4 1_555 -0.353 -0.491 3.313 -1.620 -7.385 34.088 0.336 0.336 3.356 -12.408 2.722 34.892 19 CC_DA8DT9:DA4DT5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 C DT 9 1_555 D DA 4 1_555 C DT 10 1_555 D DA 3 1_555 -0.259 -0.174 3.249 2.558 0.294 36.098 -0.320 0.773 3.222 0.473 -4.121 36.187 20 CC_DT9DT10:DA3DA4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 C DT 10 1_555 D DA 3 1_555 C DC 11 1_555 D DG 2 1_555 0.904 0.777 3.306 2.446 2.966 38.261 0.801 -1.060 3.403 4.512 -3.721 38.446 21 CC_DT10DC11:DG2DA3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 C DC 11 1_555 D DG 2 1_555 C DG 12 1_555 D DC 1 1_555 -0.173 0.597 3.379 2.152 1.408 36.516 0.750 0.582 3.384 2.244 -3.429 36.603 22 CC_DC11DG12:DC1DG2_DD C 11 ? D 2 ? C 12 ? D 1 ? 1 E DC 1 1_555 F DG 12 1_555 E DG 2 1_555 F DC 11 1_555 0.826 -0.177 4.093 -0.528 5.224 38.752 -1.048 -1.313 4.025 7.829 0.791 39.092 23 EE_DC1DG2:DC11DG12_FF E 1 ? F 12 ? E 2 ? F 11 ? 1 E DG 2 1_555 F DC 11 1_555 E DA 3 1_555 F DT 10 1_555 -0.496 0.409 2.986 0.395 6.677 35.651 -0.207 0.848 3.005 10.789 -0.638 36.253 24 EE_DG2DA3:DT10DC11_FF E 2 ? F 11 ? E 3 ? F 10 ? 1 E DA 3 1_555 F DT 10 1_555 E DA 4 1_555 F DT 9 1_555 0.225 -0.197 3.102 -6.047 8.328 35.990 -1.336 -1.098 2.913 13.151 9.549 37.385 25 EE_DA3DA4:DT9DT10_FF E 3 ? F 10 ? E 4 ? F 9 ? 1 E DA 4 1_555 F DT 9 1_555 E DT 5 1_555 F DA 8 1_555 0.487 -0.575 3.288 1.961 -1.174 30.856 -0.847 -0.530 3.331 -2.202 -3.679 30.939 26 EE_DA4DT5:DA8DT9_FF E 4 ? F 9 ? E 5 ? F 8 ? 1 E DT 5 1_555 F DA 8 1_555 E DT 6 1_555 F DA 7 1_555 0.793 0.347 3.016 7.705 2.755 34.327 0.183 -0.219 3.133 4.588 -12.829 35.261 27 EE_DT5DT6:DA7DA8_FF E 5 ? F 8 ? E 6 ? F 7 ? 1 E DT 6 1_555 F DA 7 1_555 E DA 7 1_555 F DT 6 1_555 -0.134 -0.307 3.784 0.513 11.006 31.701 -2.604 0.328 3.484 19.429 -0.906 33.515 28 EE_DT6DA7:DT6DA7_FF E 6 ? F 7 ? E 7 ? F 6 ? 1 E DA 7 1_555 F DT 6 1_555 E DA 8 1_555 F DT 5 1_555 -0.322 -0.045 3.254 -1.996 -1.658 40.201 0.122 0.243 3.265 -2.409 2.900 40.281 29 EE_DA7DA8:DT5DT6_FF E 7 ? F 6 ? E 8 ? F 5 ? 1 E DA 8 1_555 F DT 5 1_555 E DT 9 1_555 F DA 4 1_555 -0.452 -0.418 3.256 -5.535 -2.783 32.442 -0.257 -0.156 3.310 -4.926 9.796 33.013 30 EE_DA8DT9:DA4DT5_FF E 8 ? F 5 ? E 9 ? F 4 ? 1 E DT 9 1_555 F DA 4 1_555 E DT 10 1_555 F DA 3 1_555 0.270 0.057 3.172 2.255 2.776 38.157 -0.251 -0.137 3.179 4.234 -3.440 38.318 31 EE_DT9DT10:DA3DA4_FF E 9 ? F 4 ? E 10 ? F 3 ? 1 E DT 10 1_555 F DA 3 1_555 E DC 11 1_555 F DG 2 1_555 0.398 1.758 3.166 4.764 -5.558 40.971 3.029 -0.086 2.939 -7.865 -6.741 41.593 32 EE_DT10DC11:DG2DA3_FF E 10 ? F 3 ? E 11 ? F 2 ? 1 E DC 11 1_555 F DG 2 1_555 E DG 12 1_555 F DC 1 1_555 -0.495 0.654 3.283 -3.712 7.360 33.760 -0.069 0.241 3.380 12.444 6.277 34.723 33 EE_DC11DG12:DC1DG2_FF E 11 ? F 2 ? E 12 ? F 1 ? 1 G DC 1 1_555 H DG 12 1_555 G DG 2 1_555 H DC 11 1_555 0.996 0.068 4.143 1.178 3.264 39.526 -0.384 -1.293 4.162 4.815 -1.738 39.672 34 GG_DC1DG2:DC11DG12_HH G 1 ? H 12 ? G 2 ? H 11 ? 1 G DG 2 1_555 H DC 11 1_555 G DA 3 1_555 H DT 10 1_555 -0.519 0.337 2.964 -1.434 6.687 34.920 -0.345 0.658 2.994 11.012 2.362 35.563 35 GG_DG2DA3:DT10DC11_HH G 2 ? H 11 ? G 3 ? H 10 ? 1 G DA 3 1_555 H DT 10 1_555 G DA 4 1_555 H DT 9 1_555 0.242 -0.196 3.133 -5.191 5.618 35.926 -1.040 -1.058 3.007 8.983 8.300 36.705 36 GG_DA3DA4:DT9DT10_HH G 3 ? H 10 ? G 4 ? H 9 ? 1 G DA 4 1_555 H DT 9 1_555 G DT 5 1_555 H DA 8 1_555 0.563 -0.641 3.379 3.753 0.225 31.682 -1.210 -0.314 3.416 0.410 -6.845 31.899 37 GG_DA4DT5:DA8DT9_HH G 4 ? H 9 ? G 5 ? H 8 ? 1 G DT 5 1_555 H DA 8 1_555 G DT 6 1_555 H DA 7 1_555 0.649 0.414 3.038 6.115 3.213 35.648 0.237 -0.228 3.128 5.189 -9.875 36.290 38 GG_DT5DT6:DA7DA8_HH G 5 ? H 8 ? G 6 ? H 7 ? 1 G DT 6 1_555 H DA 7 1_555 G DA 7 1_555 H DT 6 1_555 -0.195 0.164 3.697 -0.163 8.358 33.664 -1.185 0.300 3.634 14.161 0.276 34.657 39 GG_DT6DA7:DT6DA7_HH G 6 ? H 7 ? G 7 ? H 6 ? 1 G DA 7 1_555 H DT 6 1_555 G DA 8 1_555 H DT 5 1_555 -0.253 -0.166 3.313 -4.144 -3.331 39.641 0.147 -0.115 3.324 -4.885 6.078 39.982 40 GG_DA7DA8:DT5DT6_HH G 7 ? H 6 ? G 8 ? H 5 ? 1 G DA 8 1_555 H DT 5 1_555 G DT 9 1_555 H DA 4 1_555 -0.381 -0.531 3.499 -0.890 -1.744 30.066 -0.638 0.537 3.533 -3.357 1.714 30.128 41 GG_DA8DT9:DA4DT5_HH G 8 ? H 5 ? G 9 ? H 4 ? 1 G DT 9 1_555 H DA 4 1_555 G DT 10 1_555 H DA 3 1_555 0.121 0.033 3.045 2.690 0.212 37.470 0.025 0.138 3.046 0.329 -4.181 37.564 42 GG_DT9DT10:DA3DA4_HH G 9 ? H 4 ? G 10 ? H 3 ? 1 G DT 10 1_555 H DA 3 1_555 G DC 11 1_555 H DG 2 1_555 0.556 1.709 3.184 2.965 -4.409 42.436 2.766 -0.479 3.030 -6.062 -4.077 42.752 43 GG_DT10DC11:DG2DA3_HH G 10 ? H 3 ? G 11 ? H 2 ? 1 G DC 11 1_555 H DG 2 1_555 G DG 12 1_555 H DC 1 1_555 -0.585 0.605 3.359 -1.650 8.632 31.373 -0.514 0.740 3.426 15.583 2.978 32.550 44 GG_DC11DG12:DC1DG2_HH G 11 ? H 2 ? G 12 ? H 1 ? # _atom_sites.entry_id 3UXW _atom_sites.fract_transf_matrix[1][1] 0.020349 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007975 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014958 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021459 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_