HEADER LIGASE 05-DEC-11 3UY4 TITLE CRYSTAL STRUCTURE OF PANTOATE--BETA-ALANINE LIGASE FROM CAMPYLOBACTER TITLE 2 JEJUNI COMPLEXED WITH AMP AND VITAMIN B5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PS, PANTOATE--BETA-ALANINE LIGASE, PANTOATE-ACTIVATING COMPND 5 ENZYME; COMPND 6 EC: 6.3.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI; SOURCE 3 ORGANISM_TAXID: 192222; SOURCE 4 STRAIN: NCTC 11168; SOURCE 5 GENE: CJ0297C, PANC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ALPHA-BETA-ALPHA STRUCTURE, CYTOSOL, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 24-JAN-18 3UY4 1 AUTHOR JRNL REVDAT 1 28-DEC-11 3UY4 0 JRNL AUTH Y.KIM,M.ZHOU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF PANTOATE--BETA-ALANINE LIGASE FROM JRNL TITL 2 CAMPYLOBACTER JEJUNI COMPLEXED WITH AMP AND VITAMIN B5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_851) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 25712 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1894 - 3.8501 0.99 3081 159 0.1603 0.1745 REMARK 3 2 3.8501 - 3.0563 1.00 2907 144 0.1694 0.1933 REMARK 3 3 3.0563 - 2.6701 1.00 2855 152 0.1777 0.1979 REMARK 3 4 2.6701 - 2.4260 1.00 2834 160 0.1747 0.2192 REMARK 3 5 2.4260 - 2.2521 1.00 2817 144 0.1651 0.2119 REMARK 3 6 2.2521 - 2.1193 1.00 2802 155 0.1707 0.2120 REMARK 3 7 2.1193 - 2.0132 1.00 2803 145 0.1784 0.2505 REMARK 3 8 2.0132 - 1.9256 0.96 2667 134 0.1920 0.2109 REMARK 3 9 1.9256 - 1.8514 0.60 1663 90 0.1973 0.2495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 35.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88770 REMARK 3 B22 (A**2) : -0.88770 REMARK 3 B33 (A**2) : 1.77530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2394 REMARK 3 ANGLE : 0.968 3235 REMARK 3 CHIRALITY : 0.060 367 REMARK 3 PLANARITY : 0.003 414 REMARK 3 DIHEDRAL : 14.332 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:20) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5562 79.9725 4.7460 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.2425 REMARK 3 T33: 0.4603 T12: -0.0017 REMARK 3 T13: -0.2804 T23: -0.1431 REMARK 3 L TENSOR REMARK 3 L11: 0.4711 L22: 3.2904 REMARK 3 L33: 4.7340 L12: 0.8905 REMARK 3 L13: -0.9729 L23: -0.9315 REMARK 3 S TENSOR REMARK 3 S11: 0.4676 S12: 0.9081 S13: -0.8245 REMARK 3 S21: -0.7936 S22: 0.0963 S23: 1.0065 REMARK 3 S31: 0.1970 S32: -1.3576 S33: 0.4744 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 21:84) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4924 76.9149 11.7620 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1001 REMARK 3 T33: 0.1445 T12: -0.0211 REMARK 3 T13: -0.0501 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 2.2349 L22: 2.1798 REMARK 3 L33: 1.8717 L12: -1.5068 REMARK 3 L13: 0.4193 L23: -0.4731 REMARK 3 S TENSOR REMARK 3 S11: 0.2092 S12: 0.0573 S13: -0.3875 REMARK 3 S21: -0.2947 S22: -0.0554 S23: 0.3240 REMARK 3 S31: 0.3966 S32: -0.0819 S33: -0.0619 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 85:149) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7364 89.7274 12.1100 REMARK 3 T TENSOR REMARK 3 T11: 0.1146 T22: 0.1012 REMARK 3 T33: 0.0772 T12: 0.0040 REMARK 3 T13: 0.0103 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.7370 L22: 2.7480 REMARK 3 L33: 0.6917 L12: -1.1494 REMARK 3 L13: 0.4131 L23: -0.5091 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: 0.0670 S13: -0.0986 REMARK 3 S21: -0.1083 S22: -0.1018 S23: 0.0466 REMARK 3 S31: 0.0075 S32: -0.0232 S33: 0.0409 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 150:172) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1416 90.8190 22.6074 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.1624 REMARK 3 T33: 0.1666 T12: 0.0092 REMARK 3 T13: 0.0369 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.8906 L22: 1.9957 REMARK 3 L33: 0.2764 L12: -1.2409 REMARK 3 L13: 0.4810 L23: -0.4342 REMARK 3 S TENSOR REMARK 3 S11: -0.1606 S12: -0.1079 S13: -0.2147 REMARK 3 S21: 0.1952 S22: 0.2367 S23: 0.3722 REMARK 3 S31: -0.0589 S32: -0.0719 S33: -0.0626 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 173:191) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4601 72.1687 20.4921 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.1125 REMARK 3 T33: 0.1421 T12: 0.0281 REMARK 3 T13: -0.0298 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.7385 L22: 1.2363 REMARK 3 L33: 1.6844 L12: -0.0075 REMARK 3 L13: -0.0992 L23: -0.4151 REMARK 3 S TENSOR REMARK 3 S11: 0.1370 S12: 0.0447 S13: -0.2780 REMARK 3 S21: -0.1057 S22: -0.0273 S23: -0.0354 REMARK 3 S31: 0.4822 S32: 0.1703 S33: -0.1207 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 192:282) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4975 82.5540 31.9197 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.1069 REMARK 3 T33: 0.1455 T12: 0.0098 REMARK 3 T13: -0.0544 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.0803 L22: 3.2176 REMARK 3 L33: 2.9694 L12: -1.2358 REMARK 3 L13: 0.5526 L23: -0.5857 REMARK 3 S TENSOR REMARK 3 S11: -0.2490 S12: -0.2665 S13: 0.2058 REMARK 3 S21: 0.6265 S22: 0.1809 S23: -0.3787 REMARK 3 S31: -0.1015 S32: 0.0256 S33: 0.0352 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26959 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.77100 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXS, MLPHARE, BUCCANEER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 %(W/V) PEG8000, HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.05400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.10800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.08100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 125.13500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.02700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.05400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 100.10800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 125.13500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.08100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.02700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -83.40100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 144.45477 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 25.02700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 209 O HOH A 380 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 65 -154.56 -107.42 REMARK 500 ASP A 73 87.69 -160.76 REMARK 500 SER A 103 3.45 -151.39 REMARK 500 ILE A 111 -51.71 72.13 REMARK 500 LEU A 115 -127.42 48.46 REMARK 500 THR A 256 -90.61 -113.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MXT RELATED DB: PDB REMARK 900 APO-FORM PROTEIN REMARK 900 RELATED ID: IDP90800 RELATED DB: TARGETDB DBREF 3UY4 A 1 282 UNP Q9PIK2 PANC_CAMJE 1 282 SEQADV 3UY4 SER A -2 UNP Q9PIK2 EXPRESSION TAG SEQADV 3UY4 ASN A -1 UNP Q9PIK2 EXPRESSION TAG SEQADV 3UY4 ALA A 0 UNP Q9PIK2 EXPRESSION TAG SEQRES 1 A 285 SER ASN ALA MSE GLN VAL ILE THR SER VAL LYS GLU ALA SEQRES 2 A 285 LYS GLN ILE VAL LYS ASP TRP LYS SER HIS GLN LEU SER SEQRES 3 A 285 ILE GLY TYR VAL PRO THR MSE GLY PHE LEU HIS ASP GLY SEQRES 4 A 285 HIS LEU SER LEU VAL LYS HIS ALA LYS THR GLN ASP LYS SEQRES 5 A 285 VAL ILE VAL SER ILE PHE VAL ASN PRO MSE GLN PHE GLY SEQRES 6 A 285 PRO ASN GLU ASP PHE SER SER TYR PRO ARG ASP LEU GLU SEQRES 7 A 285 ARG ASP ILE LYS MSE CYS GLN ASP ASN GLY VAL ASP MSE SEQRES 8 A 285 VAL PHE ILE PRO ASP ALA THR GLN MSE TYR LEU LYS ASN SEQRES 9 A 285 PHE SER THR TYR VAL ASP MSE ASN THR ILE THR ASP LYS SEQRES 10 A 285 LEU CYS GLY ALA LYS ARG PRO GLY HIS PHE ARG GLY VAL SEQRES 11 A 285 CYS THR VAL LEU THR LYS PHE PHE ASN ILE LEU ASN PRO SEQRES 12 A 285 ASP ILE VAL TYR MSE GLY GLN LYS ASP ALA GLN GLN CYS SEQRES 13 A 285 VAL VAL VAL ARG HIS MSE VAL ASP ASP LEU ASN PHE ASP SEQRES 14 A 285 LEU LYS ILE GLN ILE CYS PRO ILE ILE ARG GLU GLU ASP SEQRES 15 A 285 GLY LEU ALA LYS SER SER ARG ASN VAL TYR LEU SER LYS SEQRES 16 A 285 GLU GLU ARG LYS ALA SER LEU ALA ILE SER GLN SER ILE SEQRES 17 A 285 PHE LEU ALA GLU LYS LEU VAL ARG GLU GLY GLU LYS ASN SEQRES 18 A 285 THR SER LYS ILE ILE GLN ALA MSE LYS ASP ILE LEU GLU SEQRES 19 A 285 LYS GLU LYS LEU ILE LYS ILE ASP TYR ILE GLU LEU VAL SEQRES 20 A 285 ASP PHE ASN THR MSE GLU ASN ILE GLU ASN ILE THR ASP SEQRES 21 A 285 ASN VAL LEU GLY ALA VAL ALA ALA PHE VAL GLY LYS THR SEQRES 22 A 285 ARG LEU ILE ASP ASN PHE LEU VAL GLN GLY LEU LYS MODRES 3UY4 MSE A 1 MET SELENOMETHIONINE MODRES 3UY4 MSE A 30 MET SELENOMETHIONINE MODRES 3UY4 MSE A 59 MET SELENOMETHIONINE MODRES 3UY4 MSE A 80 MET SELENOMETHIONINE MODRES 3UY4 MSE A 88 MET SELENOMETHIONINE MODRES 3UY4 MSE A 97 MET SELENOMETHIONINE MODRES 3UY4 MSE A 108 MET SELENOMETHIONINE MODRES 3UY4 MSE A 145 MET SELENOMETHIONINE MODRES 3UY4 MSE A 159 MET SELENOMETHIONINE MODRES 3UY4 MSE A 226 MET SELENOMETHIONINE MODRES 3UY4 MSE A 249 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 30 8 HET MSE A 59 8 HET MSE A 80 8 HET MSE A 88 8 HET MSE A 97 8 HET MSE A 108 8 HET MSE A 145 8 HET MSE A 159 8 HET MSE A 226 8 HET MSE A 249 8 HET AMP A 301 23 HET PAU A 302 15 HET GOL A 303 6 HETNAM MSE SELENOMETHIONINE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PAU PANTOTHENOIC ACID HETNAM GOL GLYCEROL HETSYN PAU N-[(2R)-2,4-DIHYDROXY-3,3-DIMETHYLBUTANOYL]-BETA- HETSYN 2 PAU ALANINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 PAU C9 H17 N O5 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *195(H2 O) HELIX 1 1 SER A 6 HIS A 20 1 15 HELIX 2 2 HIS A 34 LYS A 45 1 12 HELIX 3 3 ASN A 57 PHE A 61 5 5 HELIX 4 4 ASP A 73 ASN A 84 1 12 HELIX 5 5 ASP A 93 TYR A 98 1 6 HELIX 6 6 LYS A 114 ARG A 120 1 7 HELIX 7 7 GLY A 122 ASN A 139 1 18 HELIX 8 8 ASP A 149 LEU A 163 1 15 HELIX 9 9 SER A 184 LEU A 190 5 7 HELIX 10 10 SER A 191 GLU A 214 1 24 HELIX 11 11 ASN A 218 GLU A 231 1 14 SHEET 1 A 6 GLN A 2 ILE A 4 0 SHEET 2 A 6 MSE A 88 PHE A 90 1 O VAL A 89 N ILE A 4 SHEET 3 A 6 LYS A 49 ILE A 54 1 N VAL A 52 O PHE A 90 SHEET 4 A 6 ILE A 24 THR A 29 1 N GLY A 25 O LYS A 49 SHEET 5 A 6 ILE A 142 GLY A 146 1 O TYR A 144 N TYR A 26 SHEET 6 A 6 LYS A 168 CYS A 172 1 O LYS A 168 N VAL A 143 SHEET 1 B 3 ILE A 236 VAL A 244 0 SHEET 2 B 3 VAL A 259 VAL A 267 -1 O PHE A 266 N LYS A 237 SHEET 3 B 3 THR A 270 VAL A 278 -1 O LEU A 272 N ALA A 265 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C THR A 29 N MSE A 30 1555 1555 1.33 LINK C MSE A 30 N GLY A 31 1555 1555 1.33 LINK C PRO A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N GLN A 60 1555 1555 1.32 LINK C LYS A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N CYS A 81 1555 1555 1.33 LINK C ASP A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N VAL A 89 1555 1555 1.33 LINK C GLN A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N TYR A 98 1555 1555 1.33 LINK C ASP A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N ASN A 109 1555 1555 1.33 LINK C TYR A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N GLY A 146 1555 1555 1.33 LINK C HIS A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N VAL A 160 1555 1555 1.33 LINK C ALA A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N LYS A 227 1555 1555 1.33 LINK C THR A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N GLU A 250 1555 1555 1.33 SITE 1 AC1 21 PRO A 28 MSE A 30 HIS A 34 HIS A 37 SITE 2 AC1 21 LEU A 40 MSE A 145 GLY A 146 LYS A 148 SITE 3 AC1 21 ASP A 149 PRO A 173 ILE A 174 ILE A 175 SITE 4 AC1 21 LYS A 183 HOH A 293 PAU A 302 HOH A 305 SITE 5 AC1 21 HOH A 306 HOH A 308 HOH A 315 HOH A 330 SITE 6 AC1 21 HOH A 400 SITE 1 AC2 13 MSE A 30 GLN A 60 ARG A 120 HIS A 123 SITE 2 AC2 13 VAL A 127 VAL A 130 ASP A 149 GLN A 152 SITE 3 AC2 13 ARG A 186 HOH A 290 HOH A 300 AMP A 301 SITE 4 AC2 13 HOH A 321 SITE 1 AC3 4 HIS A 34 ASP A 35 ARG A 76 LYS A 183 CRYST1 83.401 83.401 150.162 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011990 0.006923 0.000000 0.00000 SCALE2 0.000000 0.013845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006659 0.00000