data_3UYJ # _entry.id 3UYJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UYJ RCSB RCSB069369 WWPDB D_1000069369 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UYJ _pdbx_database_status.recvd_initial_deposition_date 2011-12-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Su, X.' 1 'Li, H.' 2 # _citation.id primary _citation.title 'Crystal structure of JMJD5 catalytic core domain in complex with nickle and alpha-KG' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Su, X.' 1 primary 'Li, H.' 2 # _cell.entry_id 3UYJ _cell.length_a 68.393 _cell.length_b 68.393 _cell.length_c 266.686 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UYJ _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lysine-specific demethylase 8' 28683.609 2 1.14.11.27 ? 'Catalytic core domain, UNP residues 173-416' ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 2 ? ? ? ? 3 non-polymer syn '2-OXOGLUTARIC ACID' 146.098 2 ? ? ? ? 4 water nat water 18.015 209 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'JMJC-containing demethylase, JmjC domain-containing protein 5, Jumonji domain-containing protein 5' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEW SQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNF LVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLS FSVSFWWS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMGLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEW SQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNF LVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLS FSVSFWWS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLY n 1 6 LEU n 1 7 ILE n 1 8 PRO n 1 9 ASP n 1 10 VAL n 1 11 LYS n 1 12 LEU n 1 13 GLU n 1 14 LYS n 1 15 THR n 1 16 VAL n 1 17 PRO n 1 18 ARG n 1 19 LEU n 1 20 HIS n 1 21 ARG n 1 22 PRO n 1 23 SER n 1 24 LEU n 1 25 GLN n 1 26 HIS n 1 27 PHE n 1 28 ARG n 1 29 GLU n 1 30 GLN n 1 31 PHE n 1 32 LEU n 1 33 VAL n 1 34 PRO n 1 35 GLY n 1 36 ARG n 1 37 PRO n 1 38 VAL n 1 39 ILE n 1 40 LEU n 1 41 LYS n 1 42 GLY n 1 43 VAL n 1 44 ALA n 1 45 ASP n 1 46 HIS n 1 47 TRP n 1 48 PRO n 1 49 CYS n 1 50 MET n 1 51 GLN n 1 52 LYS n 1 53 TRP n 1 54 SER n 1 55 LEU n 1 56 GLU n 1 57 TYR n 1 58 ILE n 1 59 GLN n 1 60 GLU n 1 61 ILE n 1 62 ALA n 1 63 GLY n 1 64 CYS n 1 65 ARG n 1 66 THR n 1 67 VAL n 1 68 PRO n 1 69 VAL n 1 70 GLU n 1 71 VAL n 1 72 GLY n 1 73 SER n 1 74 ARG n 1 75 TYR n 1 76 THR n 1 77 ASP n 1 78 GLU n 1 79 GLU n 1 80 TRP n 1 81 SER n 1 82 GLN n 1 83 THR n 1 84 LEU n 1 85 MET n 1 86 THR n 1 87 VAL n 1 88 ASN n 1 89 GLU n 1 90 PHE n 1 91 ILE n 1 92 SER n 1 93 LYS n 1 94 TYR n 1 95 ILE n 1 96 VAL n 1 97 ASN n 1 98 GLU n 1 99 PRO n 1 100 ARG n 1 101 ASP n 1 102 VAL n 1 103 GLY n 1 104 TYR n 1 105 LEU n 1 106 ALA n 1 107 GLN n 1 108 HIS n 1 109 GLN n 1 110 LEU n 1 111 PHE n 1 112 ASP n 1 113 GLN n 1 114 ILE n 1 115 PRO n 1 116 GLU n 1 117 LEU n 1 118 LYS n 1 119 GLN n 1 120 ASP n 1 121 ILE n 1 122 SER n 1 123 ILE n 1 124 PRO n 1 125 ASP n 1 126 TYR n 1 127 CYS n 1 128 SER n 1 129 LEU n 1 130 GLY n 1 131 ASP n 1 132 GLY n 1 133 GLU n 1 134 GLU n 1 135 GLU n 1 136 GLU n 1 137 ILE n 1 138 THR n 1 139 ILE n 1 140 ASN n 1 141 ALA n 1 142 TRP n 1 143 PHE n 1 144 GLY n 1 145 PRO n 1 146 GLN n 1 147 GLY n 1 148 THR n 1 149 ILE n 1 150 SER n 1 151 PRO n 1 152 LEU n 1 153 HIS n 1 154 GLN n 1 155 ASP n 1 156 PRO n 1 157 GLN n 1 158 GLN n 1 159 ASN n 1 160 PHE n 1 161 LEU n 1 162 VAL n 1 163 GLN n 1 164 VAL n 1 165 MET n 1 166 GLY n 1 167 ARG n 1 168 LYS n 1 169 TYR n 1 170 ILE n 1 171 ARG n 1 172 LEU n 1 173 TYR n 1 174 SER n 1 175 PRO n 1 176 GLN n 1 177 GLU n 1 178 SER n 1 179 GLY n 1 180 ALA n 1 181 LEU n 1 182 TYR n 1 183 PRO n 1 184 HIS n 1 185 ASP n 1 186 THR n 1 187 HIS n 1 188 LEU n 1 189 LEU n 1 190 HIS n 1 191 ASN n 1 192 THR n 1 193 SER n 1 194 GLN n 1 195 VAL n 1 196 ASP n 1 197 VAL n 1 198 GLU n 1 199 ASN n 1 200 PRO n 1 201 ASP n 1 202 LEU n 1 203 GLU n 1 204 LYS n 1 205 PHE n 1 206 PRO n 1 207 LYS n 1 208 PHE n 1 209 ALA n 1 210 LYS n 1 211 ALA n 1 212 PRO n 1 213 PHE n 1 214 LEU n 1 215 SER n 1 216 CYS n 1 217 ILE n 1 218 LEU n 1 219 SER n 1 220 PRO n 1 221 GLY n 1 222 GLU n 1 223 ILE n 1 224 LEU n 1 225 PHE n 1 226 ILE n 1 227 PRO n 1 228 VAL n 1 229 LYS n 1 230 TYR n 1 231 TRP n 1 232 HIS n 1 233 TYR n 1 234 VAL n 1 235 ARG n 1 236 ALA n 1 237 LEU n 1 238 ASP n 1 239 LEU n 1 240 SER n 1 241 PHE n 1 242 SER n 1 243 VAL n 1 244 SER n 1 245 PHE n 1 246 TRP n 1 247 TRP n 1 248 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'JMJD5, KDM8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rossetta2(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KDM8_HUMAN _struct_ref.pdbx_db_accession Q8N371 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSRYTDEEWSQTL MTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQV MGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVS FWWS ; _struct_ref.pdbx_align_begin 173 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UYJ A 5 ? 248 ? Q8N371 173 ? 416 ? 173 416 2 1 3UYJ B 5 ? 248 ? Q8N371 173 ? 416 ? 173 416 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UYJ GLY A 1 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 169 1 1 3UYJ SER A 2 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 170 2 1 3UYJ HIS A 3 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 171 3 1 3UYJ MET A 4 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 172 4 2 3UYJ GLY B 1 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 169 5 2 3UYJ SER B 2 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 170 6 2 3UYJ HIS B 3 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 171 7 2 3UYJ MET B 4 ? UNP Q8N371 ? ? 'EXPRESSION TAG' 172 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AKG non-polymer . '2-OXOGLUTARIC ACID' ? 'C5 H6 O5' 146.098 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UYJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_percent_sol 60.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '8% PEG3350, 0.1M HepesNa pH 7.5, EVAPORATION, temperature 291K' # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-11-08 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97922 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.pdbx_synchrotron_site SSRF _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97922 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3UYJ _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.35 _reflns.number_obs 30809 _reflns.number_all 31174 _reflns.percent_possible_obs 98.83 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.6 _reflns.B_iso_Wilson_estimate 42.86 _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.39 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.335 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3UYJ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 30809 _refine.ls_number_reflns_all 31174 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.994 _refine.ls_d_res_high 2.351 _refine.ls_percent_reflns_obs 98.83 _refine.ls_R_factor_obs 0.2054 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2029 _refine.ls_R_factor_R_free 0.2531 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.08 _refine.ls_number_reflns_R_free 1564 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 6.4271 _refine.aniso_B[2][2] 6.4271 _refine.aniso_B[3][3] -12.8543 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.385 _refine.solvent_model_param_bsol 60.602 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.27 _refine.pdbx_overall_phase_error 25.76 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3837 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 209 _refine_hist.number_atoms_total 4068 _refine_hist.d_res_high 2.351 _refine_hist.d_res_low 19.994 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.013 ? ? 3989 'X-RAY DIFFRACTION' ? f_angle_d 1.058 ? ? 5446 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.611 ? ? 1480 'X-RAY DIFFRACTION' ? f_chiral_restr 0.078 ? ? 567 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 706 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.3505 2.4344 2888 0.2338 100.00 0.3172 . . 157 . . . . 'X-RAY DIFFRACTION' . 2.4344 2.5317 2906 0.2378 100.00 0.3204 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.5317 2.6466 2864 0.2263 100.00 0.3111 . . 171 . . . . 'X-RAY DIFFRACTION' . 2.6466 2.7858 2879 0.2197 100.00 0.2634 . . 169 . . . . 'X-RAY DIFFRACTION' . 2.7858 2.9599 2969 0.2178 100.00 0.3038 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.9599 3.1875 2928 0.2205 100.00 0.2758 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.1875 3.5068 2944 0.2081 100.00 0.2400 . . 156 . . . . 'X-RAY DIFFRACTION' . 3.5068 4.0106 2868 0.1984 96.00 0.2328 . . 160 . . . . 'X-RAY DIFFRACTION' . 4.0106 5.0396 2895 0.1630 96.00 0.2197 . . 158 . . . . 'X-RAY DIFFRACTION' . 5.0396 19.9947 3104 0.2086 98.00 0.2479 . . 167 . . . . # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 3UYJ _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 3UYJ _struct.title 'Crystal structure of JMJD5 catalytic core domain in complex with nickle and alpha-KG' _struct.pdbx_descriptor 'Lysine-specific demethylase 8 (E.C.1.14.11.27)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UYJ _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'jellyroll-like all beta fold, Demethylase, Nuclear, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 9 ? GLU A 13 ? ASP A 177 GLU A 181 5 ? 5 HELX_P HELX_P2 2 SER A 23 ? PHE A 31 ? SER A 191 PHE A 199 1 ? 9 HELX_P HELX_P3 3 TRP A 47 ? TRP A 53 ? TRP A 215 TRP A 221 1 ? 7 HELX_P HELX_P4 4 SER A 54 ? GLY A 63 ? SER A 222 GLY A 231 1 ? 10 HELX_P HELX_P5 5 THR A 76 ? TRP A 80 ? THR A 244 TRP A 248 5 ? 5 HELX_P HELX_P6 6 VAL A 87 ? ILE A 95 ? VAL A 255 ILE A 263 1 ? 9 HELX_P HELX_P7 7 GLN A 109 ? ILE A 114 ? GLN A 277 ILE A 282 1 ? 6 HELX_P HELX_P8 8 PRO A 115 ? ILE A 121 ? PRO A 283 ILE A 289 5 ? 7 HELX_P HELX_P9 9 PRO A 124 ? GLY A 130 ? PRO A 292 GLY A 298 5 ? 7 HELX_P HELX_P10 10 GLU A 133 ? ILE A 137 ? GLU A 301 ILE A 305 5 ? 5 HELX_P HELX_P11 11 SER A 174 ? TYR A 182 ? SER A 342 TYR A 350 5 ? 9 HELX_P HELX_P12 12 SER B 23 ? PHE B 31 ? SER B 191 PHE B 199 1 ? 9 HELX_P HELX_P13 13 TRP B 47 ? TRP B 53 ? TRP B 215 TRP B 221 1 ? 7 HELX_P HELX_P14 14 SER B 54 ? GLY B 63 ? SER B 222 GLY B 231 1 ? 10 HELX_P HELX_P15 15 THR B 76 ? GLU B 78 ? THR B 244 GLU B 246 5 ? 3 HELX_P HELX_P16 16 VAL B 87 ? ILE B 95 ? VAL B 255 ILE B 263 1 ? 9 HELX_P HELX_P17 17 GLN B 109 ? ILE B 114 ? GLN B 277 ILE B 282 1 ? 6 HELX_P HELX_P18 18 ILE B 114 ? GLN B 119 ? ILE B 282 GLN B 287 1 ? 6 HELX_P HELX_P19 19 PRO B 124 ? GLY B 130 ? PRO B 292 GLY B 298 5 ? 7 HELX_P HELX_P20 20 GLU B 133 ? ILE B 137 ? GLU B 301 ILE B 305 5 ? 5 HELX_P HELX_P21 21 SER B 174 ? TYR B 182 ? SER B 342 TYR B 350 5 ? 9 HELX_P HELX_P22 22 LYS B 207 ? ALA B 211 ? LYS B 375 ALA B 379 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 64 SG ? ? ? 1_555 B CYS 64 SG ? ? A CYS 232 B CYS 232 1_555 ? ? ? ? ? ? ? 2.048 ? metalc1 metalc ? ? A ASP 155 OD2 ? ? ? 1_555 C NI . NI ? ? A ASP 323 A NI 501 1_555 ? ? ? ? ? ? ? 1.933 ? metalc2 metalc ? ? C NI . NI ? ? ? 1_555 D AKG . O1 ? ? A NI 501 A AKG 601 1_555 ? ? ? ? ? ? ? 1.942 ? metalc3 metalc ? ? A HIS 153 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 321 A NI 501 1_555 ? ? ? ? ? ? ? 2.014 ? metalc4 metalc ? ? B HIS 153 NE2 ? ? ? 1_555 E NI . NI ? ? B HIS 321 B NI 501 1_555 ? ? ? ? ? ? ? 2.017 ? metalc5 metalc ? ? C NI . NI ? ? ? 1_555 D AKG . O5 ? ? A NI 501 A AKG 601 1_555 ? ? ? ? ? ? ? 2.068 ? metalc6 metalc ? ? B ASP 155 OD2 ? ? ? 1_555 E NI . NI ? ? B ASP 323 B NI 501 1_555 ? ? ? ? ? ? ? 2.085 ? metalc7 metalc ? ? E NI . NI ? ? ? 1_555 F AKG . O5 ? ? B NI 501 B AKG 601 1_555 ? ? ? ? ? ? ? 2.086 ? metalc8 metalc ? ? E NI . NI ? ? ? 1_555 F AKG . O1 ? ? B NI 501 B AKG 601 1_555 ? ? ? ? ? ? ? 2.105 ? metalc9 metalc ? ? A HIS 232 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 400 A NI 501 1_555 ? ? ? ? ? ? ? 2.187 ? metalc10 metalc ? ? B HIS 232 NE2 ? ? ? 1_555 E NI . NI ? ? B HIS 400 B NI 501 1_555 ? ? ? ? ? ? ? 2.233 ? metalc11 metalc ? ? E NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 501 B HOH 19 1_555 ? ? ? ? ? ? ? 2.297 ? metalc12 metalc ? ? C NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 501 A HOH 5 1_555 ? ? ? ? ? ? ? 2.338 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 97 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 265 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 GLU _struct_mon_prot_cis.pdbx_label_seq_id_2 98 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLU _struct_mon_prot_cis.pdbx_auth_seq_id_2 266 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -17.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? C ? 4 ? D ? 9 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? anti-parallel D 7 8 ? anti-parallel D 8 9 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 18 ? HIS A 20 ? ARG A 186 HIS A 188 A 2 VAL A 38 ? LYS A 41 ? VAL A 206 LYS A 209 A 3 ILE A 223 ? ILE A 226 ? ILE A 391 ILE A 394 A 4 GLN A 158 ? MET A 165 ? GLN A 326 MET A 333 A 5 SER A 240 ? TRP A 247 ? SER A 408 TRP A 415 A 6 THR A 138 ? GLY A 144 ? THR A 306 GLY A 312 A 7 LEU A 105 ? HIS A 108 ? LEU A 273 HIS A 276 B 1 THR A 66 ? VAL A 71 ? THR A 234 VAL A 239 B 2 SER A 81 ? THR A 86 ? SER A 249 THR A 254 C 1 ILE A 149 ? HIS A 153 ? ILE A 317 HIS A 321 C 2 TRP A 231 ? ALA A 236 ? TRP A 399 ALA A 404 C 3 LYS A 168 ? TYR A 173 ? LYS A 336 TYR A 341 C 4 LEU A 214 ? LEU A 218 ? LEU A 382 LEU A 386 D 1 ARG B 18 ? HIS B 20 ? ARG B 186 HIS B 188 D 2 VAL B 38 ? LYS B 41 ? VAL B 206 LYS B 209 D 3 ILE B 223 ? ILE B 226 ? ILE B 391 ILE B 394 D 4 GLN B 158 ? MET B 165 ? GLN B 326 MET B 333 D 5 SER B 240 ? TRP B 247 ? SER B 408 TRP B 415 D 6 THR B 138 ? GLY B 144 ? THR B 306 GLY B 312 D 7 GLY B 103 ? HIS B 108 ? GLY B 271 HIS B 276 D 8 THR B 66 ? GLY B 72 ? THR B 234 GLY B 240 D 9 TRP B 80 ? THR B 86 ? TRP B 248 THR B 254 E 1 ILE B 149 ? HIS B 153 ? ILE B 317 HIS B 321 E 2 TRP B 231 ? ALA B 236 ? TRP B 399 ALA B 404 E 3 LYS B 168 ? TYR B 173 ? LYS B 336 TYR B 341 E 4 LEU B 214 ? LEU B 218 ? LEU B 382 LEU B 386 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 19 ? N LEU A 187 O LYS A 41 ? O LYS A 209 A 2 3 N VAL A 38 ? N VAL A 206 O PHE A 225 ? O PHE A 393 A 3 4 O LEU A 224 ? O LEU A 392 N LEU A 161 ? N LEU A 329 A 4 5 N VAL A 162 ? N VAL A 330 O VAL A 243 ? O VAL A 411 A 5 6 O SER A 240 ? O SER A 408 N GLY A 144 ? N GLY A 312 A 6 7 O ALA A 141 ? O ALA A 309 N HIS A 108 ? N HIS A 276 B 1 2 N VAL A 67 ? N VAL A 235 O MET A 85 ? O MET A 253 C 1 2 N SER A 150 ? N SER A 318 O VAL A 234 ? O VAL A 402 C 2 3 O ARG A 235 ? O ARG A 403 N TYR A 169 ? N TYR A 337 C 3 4 N LEU A 172 ? N LEU A 340 O LEU A 214 ? O LEU A 382 D 1 2 N LEU B 19 ? N LEU B 187 O LYS B 41 ? O LYS B 209 D 2 3 N VAL B 38 ? N VAL B 206 O PHE B 225 ? O PHE B 393 D 3 4 O LEU B 224 ? O LEU B 392 N LEU B 161 ? N LEU B 329 D 4 5 N VAL B 162 ? N VAL B 330 O VAL B 243 ? O VAL B 411 D 5 6 O SER B 240 ? O SER B 408 N GLY B 144 ? N GLY B 312 D 6 7 O ALA B 141 ? O ALA B 309 N HIS B 108 ? N HIS B 276 D 7 8 O TYR B 104 ? O TYR B 272 N GLU B 70 ? N GLU B 238 D 8 9 N VAL B 67 ? N VAL B 235 O MET B 85 ? O MET B 253 E 1 2 N SER B 150 ? N SER B 318 O VAL B 234 ? O VAL B 402 E 2 3 O ARG B 235 ? O ARG B 403 N TYR B 169 ? N TYR B 337 E 3 4 N LEU B 172 ? N LEU B 340 O LEU B 214 ? O LEU B 382 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NI A 501' AC2 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE AKG A 601' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NI B 501' AC4 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE AKG B 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH G . ? HOH A 5 . ? 1_555 ? 2 AC1 5 HIS A 153 ? HIS A 321 . ? 1_555 ? 3 AC1 5 ASP A 155 ? ASP A 323 . ? 1_555 ? 4 AC1 5 HIS A 232 ? HIS A 400 . ? 1_555 ? 5 AC1 5 AKG D . ? AKG A 601 . ? 1_555 ? 6 AC2 14 HOH G . ? HOH A 58 . ? 1_555 ? 7 AC2 14 HOH G . ? HOH A 119 . ? 1_555 ? 8 AC2 14 TYR A 104 ? TYR A 272 . ? 1_555 ? 9 AC2 14 TRP A 142 ? TRP A 310 . ? 1_555 ? 10 AC2 14 SER A 150 ? SER A 318 . ? 1_555 ? 11 AC2 14 HIS A 153 ? HIS A 321 . ? 1_555 ? 12 AC2 14 ASP A 155 ? ASP A 323 . ? 1_555 ? 13 AC2 14 ASN A 159 ? ASN A 327 . ? 1_555 ? 14 AC2 14 LYS A 168 ? LYS A 336 . ? 1_555 ? 15 AC2 14 HIS A 232 ? HIS A 400 . ? 1_555 ? 16 AC2 14 VAL A 234 ? VAL A 402 . ? 1_555 ? 17 AC2 14 SER A 244 ? SER A 412 . ? 1_555 ? 18 AC2 14 TRP A 246 ? TRP A 414 . ? 1_555 ? 19 AC2 14 NI C . ? NI A 501 . ? 1_555 ? 20 AC3 5 HOH H . ? HOH B 19 . ? 1_555 ? 21 AC3 5 HIS B 153 ? HIS B 321 . ? 1_555 ? 22 AC3 5 ASP B 155 ? ASP B 323 . ? 1_555 ? 23 AC3 5 HIS B 232 ? HIS B 400 . ? 1_555 ? 24 AC3 5 AKG F . ? AKG B 601 . ? 1_555 ? 25 AC4 12 TYR B 104 ? TYR B 272 . ? 1_555 ? 26 AC4 12 TRP B 142 ? TRP B 310 . ? 1_555 ? 27 AC4 12 SER B 150 ? SER B 318 . ? 1_555 ? 28 AC4 12 HIS B 153 ? HIS B 321 . ? 1_555 ? 29 AC4 12 ASP B 155 ? ASP B 323 . ? 1_555 ? 30 AC4 12 ASN B 159 ? ASN B 327 . ? 1_555 ? 31 AC4 12 LYS B 168 ? LYS B 336 . ? 1_555 ? 32 AC4 12 HIS B 232 ? HIS B 400 . ? 1_555 ? 33 AC4 12 VAL B 234 ? VAL B 402 . ? 1_555 ? 34 AC4 12 SER B 244 ? SER B 412 . ? 1_555 ? 35 AC4 12 TRP B 246 ? TRP B 414 . ? 1_555 ? 36 AC4 12 NI E . ? NI B 501 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UYJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UYJ _atom_sites.fract_transf_matrix[1][1] 0.014621 _atom_sites.fract_transf_matrix[1][2] 0.008442 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016883 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003750 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 169 ? ? ? A . n A 1 2 SER 2 170 ? ? ? A . n A 1 3 HIS 3 171 ? ? ? A . n A 1 4 MET 4 172 ? ? ? A . n A 1 5 GLY 5 173 173 GLY GLY A . n A 1 6 LEU 6 174 174 LEU LEU A . n A 1 7 ILE 7 175 175 ILE ILE A . n A 1 8 PRO 8 176 176 PRO PRO A . n A 1 9 ASP 9 177 177 ASP ASP A . n A 1 10 VAL 10 178 178 VAL VAL A . n A 1 11 LYS 11 179 179 LYS LYS A . n A 1 12 LEU 12 180 180 LEU LEU A . n A 1 13 GLU 13 181 181 GLU GLU A . n A 1 14 LYS 14 182 182 LYS LYS A . n A 1 15 THR 15 183 183 THR THR A . n A 1 16 VAL 16 184 184 VAL VAL A . n A 1 17 PRO 17 185 185 PRO PRO A . n A 1 18 ARG 18 186 186 ARG ARG A . n A 1 19 LEU 19 187 187 LEU LEU A . n A 1 20 HIS 20 188 188 HIS HIS A . n A 1 21 ARG 21 189 189 ARG ARG A . n A 1 22 PRO 22 190 190 PRO PRO A . n A 1 23 SER 23 191 191 SER SER A . n A 1 24 LEU 24 192 192 LEU LEU A . n A 1 25 GLN 25 193 193 GLN GLN A . n A 1 26 HIS 26 194 194 HIS HIS A . n A 1 27 PHE 27 195 195 PHE PHE A . n A 1 28 ARG 28 196 196 ARG ARG A . n A 1 29 GLU 29 197 197 GLU GLU A . n A 1 30 GLN 30 198 198 GLN GLN A . n A 1 31 PHE 31 199 199 PHE PHE A . n A 1 32 LEU 32 200 200 LEU LEU A . n A 1 33 VAL 33 201 201 VAL VAL A . n A 1 34 PRO 34 202 202 PRO PRO A . n A 1 35 GLY 35 203 203 GLY GLY A . n A 1 36 ARG 36 204 204 ARG ARG A . n A 1 37 PRO 37 205 205 PRO PRO A . n A 1 38 VAL 38 206 206 VAL VAL A . n A 1 39 ILE 39 207 207 ILE ILE A . n A 1 40 LEU 40 208 208 LEU LEU A . n A 1 41 LYS 41 209 209 LYS LYS A . n A 1 42 GLY 42 210 210 GLY GLY A . n A 1 43 VAL 43 211 211 VAL VAL A . n A 1 44 ALA 44 212 212 ALA ALA A . n A 1 45 ASP 45 213 213 ASP ASP A . n A 1 46 HIS 46 214 214 HIS HIS A . n A 1 47 TRP 47 215 215 TRP TRP A . n A 1 48 PRO 48 216 216 PRO PRO A . n A 1 49 CYS 49 217 217 CYS CYS A . n A 1 50 MET 50 218 218 MET MET A . n A 1 51 GLN 51 219 219 GLN GLN A . n A 1 52 LYS 52 220 220 LYS LYS A . n A 1 53 TRP 53 221 221 TRP TRP A . n A 1 54 SER 54 222 222 SER SER A . n A 1 55 LEU 55 223 223 LEU LEU A . n A 1 56 GLU 56 224 224 GLU GLU A . n A 1 57 TYR 57 225 225 TYR TYR A . n A 1 58 ILE 58 226 226 ILE ILE A . n A 1 59 GLN 59 227 227 GLN GLN A . n A 1 60 GLU 60 228 228 GLU GLU A . n A 1 61 ILE 61 229 229 ILE ILE A . n A 1 62 ALA 62 230 230 ALA ALA A . n A 1 63 GLY 63 231 231 GLY GLY A . n A 1 64 CYS 64 232 232 CYS CYS A . n A 1 65 ARG 65 233 233 ARG ARG A . n A 1 66 THR 66 234 234 THR THR A . n A 1 67 VAL 67 235 235 VAL VAL A . n A 1 68 PRO 68 236 236 PRO PRO A . n A 1 69 VAL 69 237 237 VAL VAL A . n A 1 70 GLU 70 238 238 GLU GLU A . n A 1 71 VAL 71 239 239 VAL VAL A . n A 1 72 GLY 72 240 240 GLY GLY A . n A 1 73 SER 73 241 241 SER SER A . n A 1 74 ARG 74 242 242 ARG ARG A . n A 1 75 TYR 75 243 243 TYR TYR A . n A 1 76 THR 76 244 244 THR THR A . n A 1 77 ASP 77 245 245 ASP ASP A . n A 1 78 GLU 78 246 246 GLU GLU A . n A 1 79 GLU 79 247 247 GLU GLU A . n A 1 80 TRP 80 248 248 TRP TRP A . n A 1 81 SER 81 249 249 SER SER A . n A 1 82 GLN 82 250 250 GLN GLN A . n A 1 83 THR 83 251 251 THR THR A . n A 1 84 LEU 84 252 252 LEU LEU A . n A 1 85 MET 85 253 253 MET MET A . n A 1 86 THR 86 254 254 THR THR A . n A 1 87 VAL 87 255 255 VAL VAL A . n A 1 88 ASN 88 256 256 ASN ASN A . n A 1 89 GLU 89 257 257 GLU GLU A . n A 1 90 PHE 90 258 258 PHE PHE A . n A 1 91 ILE 91 259 259 ILE ILE A . n A 1 92 SER 92 260 260 SER SER A . n A 1 93 LYS 93 261 261 LYS LYS A . n A 1 94 TYR 94 262 262 TYR TYR A . n A 1 95 ILE 95 263 263 ILE ILE A . n A 1 96 VAL 96 264 264 VAL VAL A . n A 1 97 ASN 97 265 265 ASN ASN A . n A 1 98 GLU 98 266 266 GLU GLU A . n A 1 99 PRO 99 267 267 PRO PRO A . n A 1 100 ARG 100 268 268 ARG ARG A . n A 1 101 ASP 101 269 269 ASP ASP A . n A 1 102 VAL 102 270 270 VAL VAL A . n A 1 103 GLY 103 271 271 GLY GLY A . n A 1 104 TYR 104 272 272 TYR TYR A . n A 1 105 LEU 105 273 273 LEU LEU A . n A 1 106 ALA 106 274 274 ALA ALA A . n A 1 107 GLN 107 275 275 GLN GLN A . n A 1 108 HIS 108 276 276 HIS HIS A . n A 1 109 GLN 109 277 277 GLN GLN A . n A 1 110 LEU 110 278 278 LEU LEU A . n A 1 111 PHE 111 279 279 PHE PHE A . n A 1 112 ASP 112 280 280 ASP ASP A . n A 1 113 GLN 113 281 281 GLN GLN A . n A 1 114 ILE 114 282 282 ILE ILE A . n A 1 115 PRO 115 283 283 PRO PRO A . n A 1 116 GLU 116 284 284 GLU GLU A . n A 1 117 LEU 117 285 285 LEU LEU A . n A 1 118 LYS 118 286 286 LYS LYS A . n A 1 119 GLN 119 287 287 GLN GLN A . n A 1 120 ASP 120 288 288 ASP ASP A . n A 1 121 ILE 121 289 289 ILE ILE A . n A 1 122 SER 122 290 290 SER SER A . n A 1 123 ILE 123 291 291 ILE ILE A . n A 1 124 PRO 124 292 292 PRO PRO A . n A 1 125 ASP 125 293 293 ASP ASP A . n A 1 126 TYR 126 294 294 TYR TYR A . n A 1 127 CYS 127 295 295 CYS CYS A . n A 1 128 SER 128 296 296 SER SER A . n A 1 129 LEU 129 297 297 LEU LEU A . n A 1 130 GLY 130 298 298 GLY GLY A . n A 1 131 ASP 131 299 299 ASP ASP A . n A 1 132 GLY 132 300 300 GLY GLY A . n A 1 133 GLU 133 301 301 GLU GLU A . n A 1 134 GLU 134 302 302 GLU GLU A . n A 1 135 GLU 135 303 303 GLU GLU A . n A 1 136 GLU 136 304 304 GLU GLU A . n A 1 137 ILE 137 305 305 ILE ILE A . n A 1 138 THR 138 306 306 THR THR A . n A 1 139 ILE 139 307 307 ILE ILE A . n A 1 140 ASN 140 308 308 ASN ASN A . n A 1 141 ALA 141 309 309 ALA ALA A . n A 1 142 TRP 142 310 310 TRP TRP A . n A 1 143 PHE 143 311 311 PHE PHE A . n A 1 144 GLY 144 312 312 GLY GLY A . n A 1 145 PRO 145 313 313 PRO PRO A . n A 1 146 GLN 146 314 314 GLN GLN A . n A 1 147 GLY 147 315 315 GLY GLY A . n A 1 148 THR 148 316 316 THR THR A . n A 1 149 ILE 149 317 317 ILE ILE A . n A 1 150 SER 150 318 318 SER SER A . n A 1 151 PRO 151 319 319 PRO PRO A . n A 1 152 LEU 152 320 320 LEU LEU A . n A 1 153 HIS 153 321 321 HIS HIS A . n A 1 154 GLN 154 322 322 GLN GLN A . n A 1 155 ASP 155 323 323 ASP ASP A . n A 1 156 PRO 156 324 324 PRO PRO A . n A 1 157 GLN 157 325 325 GLN GLN A . n A 1 158 GLN 158 326 326 GLN GLN A . n A 1 159 ASN 159 327 327 ASN ASN A . n A 1 160 PHE 160 328 328 PHE PHE A . n A 1 161 LEU 161 329 329 LEU LEU A . n A 1 162 VAL 162 330 330 VAL VAL A . n A 1 163 GLN 163 331 331 GLN GLN A . n A 1 164 VAL 164 332 332 VAL VAL A . n A 1 165 MET 165 333 333 MET MET A . n A 1 166 GLY 166 334 334 GLY GLY A . n A 1 167 ARG 167 335 335 ARG ARG A . n A 1 168 LYS 168 336 336 LYS LYS A . n A 1 169 TYR 169 337 337 TYR TYR A . n A 1 170 ILE 170 338 338 ILE ILE A . n A 1 171 ARG 171 339 339 ARG ARG A . n A 1 172 LEU 172 340 340 LEU LEU A . n A 1 173 TYR 173 341 341 TYR TYR A . n A 1 174 SER 174 342 342 SER SER A . n A 1 175 PRO 175 343 343 PRO PRO A . n A 1 176 GLN 176 344 344 GLN GLN A . n A 1 177 GLU 177 345 345 GLU GLU A . n A 1 178 SER 178 346 346 SER SER A . n A 1 179 GLY 179 347 347 GLY GLY A . n A 1 180 ALA 180 348 348 ALA ALA A . n A 1 181 LEU 181 349 349 LEU LEU A . n A 1 182 TYR 182 350 350 TYR TYR A . n A 1 183 PRO 183 351 351 PRO PRO A . n A 1 184 HIS 184 352 352 HIS HIS A . n A 1 185 ASP 185 353 ? ? ? A . n A 1 186 THR 186 354 ? ? ? A . n A 1 187 HIS 187 355 ? ? ? A . n A 1 188 LEU 188 356 ? ? ? A . n A 1 189 LEU 189 357 ? ? ? A . n A 1 190 HIS 190 358 ? ? ? A . n A 1 191 ASN 191 359 359 ASN ASN A . n A 1 192 THR 192 360 360 THR THR A . n A 1 193 SER 193 361 361 SER SER A . n A 1 194 GLN 194 362 362 GLN GLN A . n A 1 195 VAL 195 363 363 VAL VAL A . n A 1 196 ASP 196 364 364 ASP ASP A . n A 1 197 VAL 197 365 365 VAL VAL A . n A 1 198 GLU 198 366 366 GLU GLU A . n A 1 199 ASN 199 367 367 ASN ASN A . n A 1 200 PRO 200 368 368 PRO PRO A . n A 1 201 ASP 201 369 369 ASP ASP A . n A 1 202 LEU 202 370 370 LEU LEU A . n A 1 203 GLU 203 371 371 GLU GLU A . n A 1 204 LYS 204 372 372 LYS LYS A . n A 1 205 PHE 205 373 373 PHE PHE A . n A 1 206 PRO 206 374 374 PRO PRO A . n A 1 207 LYS 207 375 375 LYS LYS A . n A 1 208 PHE 208 376 376 PHE PHE A . n A 1 209 ALA 209 377 377 ALA ALA A . n A 1 210 LYS 210 378 378 LYS LYS A . n A 1 211 ALA 211 379 379 ALA ALA A . n A 1 212 PRO 212 380 380 PRO PRO A . n A 1 213 PHE 213 381 381 PHE PHE A . n A 1 214 LEU 214 382 382 LEU LEU A . n A 1 215 SER 215 383 383 SER SER A . n A 1 216 CYS 216 384 384 CYS CYS A . n A 1 217 ILE 217 385 385 ILE ILE A . n A 1 218 LEU 218 386 386 LEU LEU A . n A 1 219 SER 219 387 387 SER SER A . n A 1 220 PRO 220 388 388 PRO PRO A . n A 1 221 GLY 221 389 389 GLY GLY A . n A 1 222 GLU 222 390 390 GLU GLU A . n A 1 223 ILE 223 391 391 ILE ILE A . n A 1 224 LEU 224 392 392 LEU LEU A . n A 1 225 PHE 225 393 393 PHE PHE A . n A 1 226 ILE 226 394 394 ILE ILE A . n A 1 227 PRO 227 395 395 PRO PRO A . n A 1 228 VAL 228 396 396 VAL VAL A . n A 1 229 LYS 229 397 397 LYS LYS A . n A 1 230 TYR 230 398 398 TYR TYR A . n A 1 231 TRP 231 399 399 TRP TRP A . n A 1 232 HIS 232 400 400 HIS HIS A . n A 1 233 TYR 233 401 401 TYR TYR A . n A 1 234 VAL 234 402 402 VAL VAL A . n A 1 235 ARG 235 403 403 ARG ARG A . n A 1 236 ALA 236 404 404 ALA ALA A . n A 1 237 LEU 237 405 405 LEU LEU A . n A 1 238 ASP 238 406 406 ASP ASP A . n A 1 239 LEU 239 407 407 LEU LEU A . n A 1 240 SER 240 408 408 SER SER A . n A 1 241 PHE 241 409 409 PHE PHE A . n A 1 242 SER 242 410 410 SER SER A . n A 1 243 VAL 243 411 411 VAL VAL A . n A 1 244 SER 244 412 412 SER SER A . n A 1 245 PHE 245 413 413 PHE PHE A . n A 1 246 TRP 246 414 414 TRP TRP A . n A 1 247 TRP 247 415 415 TRP TRP A . n A 1 248 SER 248 416 416 SER SER A . n B 1 1 GLY 1 169 ? ? ? B . n B 1 2 SER 2 170 ? ? ? B . n B 1 3 HIS 3 171 ? ? ? B . n B 1 4 MET 4 172 ? ? ? B . n B 1 5 GLY 5 173 ? ? ? B . n B 1 6 LEU 6 174 ? ? ? B . n B 1 7 ILE 7 175 ? ? ? B . n B 1 8 PRO 8 176 ? ? ? B . n B 1 9 ASP 9 177 ? ? ? B . n B 1 10 VAL 10 178 ? ? ? B . n B 1 11 LYS 11 179 ? ? ? B . n B 1 12 LEU 12 180 ? ? ? B . n B 1 13 GLU 13 181 181 GLU GLU B . n B 1 14 LYS 14 182 182 LYS LYS B . n B 1 15 THR 15 183 183 THR THR B . n B 1 16 VAL 16 184 184 VAL VAL B . n B 1 17 PRO 17 185 185 PRO PRO B . n B 1 18 ARG 18 186 186 ARG ARG B . n B 1 19 LEU 19 187 187 LEU LEU B . n B 1 20 HIS 20 188 188 HIS HIS B . n B 1 21 ARG 21 189 189 ARG ARG B . n B 1 22 PRO 22 190 190 PRO PRO B . n B 1 23 SER 23 191 191 SER SER B . n B 1 24 LEU 24 192 192 LEU LEU B . n B 1 25 GLN 25 193 193 GLN GLN B . n B 1 26 HIS 26 194 194 HIS HIS B . n B 1 27 PHE 27 195 195 PHE PHE B . n B 1 28 ARG 28 196 196 ARG ARG B . n B 1 29 GLU 29 197 197 GLU GLU B . n B 1 30 GLN 30 198 198 GLN GLN B . n B 1 31 PHE 31 199 199 PHE PHE B . n B 1 32 LEU 32 200 200 LEU LEU B . n B 1 33 VAL 33 201 201 VAL VAL B . n B 1 34 PRO 34 202 202 PRO PRO B . n B 1 35 GLY 35 203 203 GLY GLY B . n B 1 36 ARG 36 204 204 ARG ARG B . n B 1 37 PRO 37 205 205 PRO PRO B . n B 1 38 VAL 38 206 206 VAL VAL B . n B 1 39 ILE 39 207 207 ILE ILE B . n B 1 40 LEU 40 208 208 LEU LEU B . n B 1 41 LYS 41 209 209 LYS LYS B . n B 1 42 GLY 42 210 210 GLY GLY B . n B 1 43 VAL 43 211 211 VAL VAL B . n B 1 44 ALA 44 212 212 ALA ALA B . n B 1 45 ASP 45 213 213 ASP ASP B . n B 1 46 HIS 46 214 214 HIS HIS B . n B 1 47 TRP 47 215 215 TRP TRP B . n B 1 48 PRO 48 216 216 PRO PRO B . n B 1 49 CYS 49 217 217 CYS CYS B . n B 1 50 MET 50 218 218 MET MET B . n B 1 51 GLN 51 219 219 GLN GLN B . n B 1 52 LYS 52 220 220 LYS LYS B . n B 1 53 TRP 53 221 221 TRP TRP B . n B 1 54 SER 54 222 222 SER SER B . n B 1 55 LEU 55 223 223 LEU LEU B . n B 1 56 GLU 56 224 224 GLU GLU B . n B 1 57 TYR 57 225 225 TYR TYR B . n B 1 58 ILE 58 226 226 ILE ILE B . n B 1 59 GLN 59 227 227 GLN GLN B . n B 1 60 GLU 60 228 228 GLU GLU B . n B 1 61 ILE 61 229 229 ILE ILE B . n B 1 62 ALA 62 230 230 ALA ALA B . n B 1 63 GLY 63 231 231 GLY GLY B . n B 1 64 CYS 64 232 232 CYS CYS B . n B 1 65 ARG 65 233 233 ARG ARG B . n B 1 66 THR 66 234 234 THR THR B . n B 1 67 VAL 67 235 235 VAL VAL B . n B 1 68 PRO 68 236 236 PRO PRO B . n B 1 69 VAL 69 237 237 VAL VAL B . n B 1 70 GLU 70 238 238 GLU GLU B . n B 1 71 VAL 71 239 239 VAL VAL B . n B 1 72 GLY 72 240 240 GLY GLY B . n B 1 73 SER 73 241 241 SER SER B . n B 1 74 ARG 74 242 242 ARG ARG B . n B 1 75 TYR 75 243 243 TYR TYR B . n B 1 76 THR 76 244 244 THR THR B . n B 1 77 ASP 77 245 245 ASP ASP B . n B 1 78 GLU 78 246 246 GLU GLU B . n B 1 79 GLU 79 247 247 GLU GLU B . n B 1 80 TRP 80 248 248 TRP TRP B . n B 1 81 SER 81 249 249 SER SER B . n B 1 82 GLN 82 250 250 GLN GLN B . n B 1 83 THR 83 251 251 THR THR B . n B 1 84 LEU 84 252 252 LEU LEU B . n B 1 85 MET 85 253 253 MET MET B . n B 1 86 THR 86 254 254 THR THR B . n B 1 87 VAL 87 255 255 VAL VAL B . n B 1 88 ASN 88 256 256 ASN ASN B . n B 1 89 GLU 89 257 257 GLU GLU B . n B 1 90 PHE 90 258 258 PHE PHE B . n B 1 91 ILE 91 259 259 ILE ILE B . n B 1 92 SER 92 260 260 SER SER B . n B 1 93 LYS 93 261 261 LYS LYS B . n B 1 94 TYR 94 262 262 TYR TYR B . n B 1 95 ILE 95 263 263 ILE ILE B . n B 1 96 VAL 96 264 264 VAL VAL B . n B 1 97 ASN 97 265 265 ASN ASN B . n B 1 98 GLU 98 266 266 GLU GLU B . n B 1 99 PRO 99 267 267 PRO PRO B . n B 1 100 ARG 100 268 268 ARG ARG B . n B 1 101 ASP 101 269 269 ASP ASP B . n B 1 102 VAL 102 270 270 VAL VAL B . n B 1 103 GLY 103 271 271 GLY GLY B . n B 1 104 TYR 104 272 272 TYR TYR B . n B 1 105 LEU 105 273 273 LEU LEU B . n B 1 106 ALA 106 274 274 ALA ALA B . n B 1 107 GLN 107 275 275 GLN GLN B . n B 1 108 HIS 108 276 276 HIS HIS B . n B 1 109 GLN 109 277 277 GLN GLN B . n B 1 110 LEU 110 278 278 LEU LEU B . n B 1 111 PHE 111 279 279 PHE PHE B . n B 1 112 ASP 112 280 280 ASP ASP B . n B 1 113 GLN 113 281 281 GLN GLN B . n B 1 114 ILE 114 282 282 ILE ILE B . n B 1 115 PRO 115 283 283 PRO PRO B . n B 1 116 GLU 116 284 284 GLU GLU B . n B 1 117 LEU 117 285 285 LEU LEU B . n B 1 118 LYS 118 286 286 LYS LYS B . n B 1 119 GLN 119 287 287 GLN GLN B . n B 1 120 ASP 120 288 288 ASP ASP B . n B 1 121 ILE 121 289 289 ILE ILE B . n B 1 122 SER 122 290 290 SER SER B . n B 1 123 ILE 123 291 291 ILE ILE B . n B 1 124 PRO 124 292 292 PRO PRO B . n B 1 125 ASP 125 293 293 ASP ASP B . n B 1 126 TYR 126 294 294 TYR TYR B . n B 1 127 CYS 127 295 295 CYS CYS B . n B 1 128 SER 128 296 296 SER SER B . n B 1 129 LEU 129 297 297 LEU LEU B . n B 1 130 GLY 130 298 298 GLY GLY B . n B 1 131 ASP 131 299 299 ASP ASP B . n B 1 132 GLY 132 300 300 GLY GLY B . n B 1 133 GLU 133 301 301 GLU GLU B . n B 1 134 GLU 134 302 302 GLU GLU B . n B 1 135 GLU 135 303 303 GLU GLU B . n B 1 136 GLU 136 304 304 GLU GLU B . n B 1 137 ILE 137 305 305 ILE ILE B . n B 1 138 THR 138 306 306 THR THR B . n B 1 139 ILE 139 307 307 ILE ILE B . n B 1 140 ASN 140 308 308 ASN ASN B . n B 1 141 ALA 141 309 309 ALA ALA B . n B 1 142 TRP 142 310 310 TRP TRP B . n B 1 143 PHE 143 311 311 PHE PHE B . n B 1 144 GLY 144 312 312 GLY GLY B . n B 1 145 PRO 145 313 313 PRO PRO B . n B 1 146 GLN 146 314 314 GLN GLN B . n B 1 147 GLY 147 315 315 GLY GLY B . n B 1 148 THR 148 316 316 THR THR B . n B 1 149 ILE 149 317 317 ILE ILE B . n B 1 150 SER 150 318 318 SER SER B . n B 1 151 PRO 151 319 319 PRO PRO B . n B 1 152 LEU 152 320 320 LEU LEU B . n B 1 153 HIS 153 321 321 HIS HIS B . n B 1 154 GLN 154 322 322 GLN GLN B . n B 1 155 ASP 155 323 323 ASP ASP B . n B 1 156 PRO 156 324 324 PRO PRO B . n B 1 157 GLN 157 325 325 GLN GLN B . n B 1 158 GLN 158 326 326 GLN GLN B . n B 1 159 ASN 159 327 327 ASN ASN B . n B 1 160 PHE 160 328 328 PHE PHE B . n B 1 161 LEU 161 329 329 LEU LEU B . n B 1 162 VAL 162 330 330 VAL VAL B . n B 1 163 GLN 163 331 331 GLN GLN B . n B 1 164 VAL 164 332 332 VAL VAL B . n B 1 165 MET 165 333 333 MET MET B . n B 1 166 GLY 166 334 334 GLY GLY B . n B 1 167 ARG 167 335 335 ARG ARG B . n B 1 168 LYS 168 336 336 LYS LYS B . n B 1 169 TYR 169 337 337 TYR TYR B . n B 1 170 ILE 170 338 338 ILE ILE B . n B 1 171 ARG 171 339 339 ARG ARG B . n B 1 172 LEU 172 340 340 LEU LEU B . n B 1 173 TYR 173 341 341 TYR TYR B . n B 1 174 SER 174 342 342 SER SER B . n B 1 175 PRO 175 343 343 PRO PRO B . n B 1 176 GLN 176 344 344 GLN GLN B . n B 1 177 GLU 177 345 345 GLU GLU B . n B 1 178 SER 178 346 346 SER SER B . n B 1 179 GLY 179 347 347 GLY GLY B . n B 1 180 ALA 180 348 348 ALA ALA B . n B 1 181 LEU 181 349 349 LEU LEU B . n B 1 182 TYR 182 350 350 TYR TYR B . n B 1 183 PRO 183 351 351 PRO PRO B . n B 1 184 HIS 184 352 352 HIS HIS B . n B 1 185 ASP 185 353 ? ? ? B . n B 1 186 THR 186 354 ? ? ? B . n B 1 187 HIS 187 355 ? ? ? B . n B 1 188 LEU 188 356 ? ? ? B . n B 1 189 LEU 189 357 ? ? ? B . n B 1 190 HIS 190 358 ? ? ? B . n B 1 191 ASN 191 359 359 ASN ASN B . n B 1 192 THR 192 360 360 THR THR B . n B 1 193 SER 193 361 361 SER SER B . n B 1 194 GLN 194 362 362 GLN GLN B . n B 1 195 VAL 195 363 363 VAL VAL B . n B 1 196 ASP 196 364 364 ASP ASP B . n B 1 197 VAL 197 365 365 VAL VAL B . n B 1 198 GLU 198 366 366 GLU GLU B . n B 1 199 ASN 199 367 367 ASN ASN B . n B 1 200 PRO 200 368 368 PRO PRO B . n B 1 201 ASP 201 369 369 ASP ASP B . n B 1 202 LEU 202 370 370 LEU LEU B . n B 1 203 GLU 203 371 371 GLU GLU B . n B 1 204 LYS 204 372 372 LYS LYS B . n B 1 205 PHE 205 373 373 PHE PHE B . n B 1 206 PRO 206 374 374 PRO PRO B . n B 1 207 LYS 207 375 375 LYS LYS B . n B 1 208 PHE 208 376 376 PHE PHE B . n B 1 209 ALA 209 377 377 ALA ALA B . n B 1 210 LYS 210 378 378 LYS LYS B . n B 1 211 ALA 211 379 379 ALA ALA B . n B 1 212 PRO 212 380 380 PRO PRO B . n B 1 213 PHE 213 381 381 PHE PHE B . n B 1 214 LEU 214 382 382 LEU LEU B . n B 1 215 SER 215 383 383 SER SER B . n B 1 216 CYS 216 384 384 CYS CYS B . n B 1 217 ILE 217 385 385 ILE ILE B . n B 1 218 LEU 218 386 386 LEU LEU B . n B 1 219 SER 219 387 387 SER SER B . n B 1 220 PRO 220 388 388 PRO PRO B . n B 1 221 GLY 221 389 389 GLY GLY B . n B 1 222 GLU 222 390 390 GLU GLU B . n B 1 223 ILE 223 391 391 ILE ILE B . n B 1 224 LEU 224 392 392 LEU LEU B . n B 1 225 PHE 225 393 393 PHE PHE B . n B 1 226 ILE 226 394 394 ILE ILE B . n B 1 227 PRO 227 395 395 PRO PRO B . n B 1 228 VAL 228 396 396 VAL VAL B . n B 1 229 LYS 229 397 397 LYS LYS B . n B 1 230 TYR 230 398 398 TYR TYR B . n B 1 231 TRP 231 399 399 TRP TRP B . n B 1 232 HIS 232 400 400 HIS HIS B . n B 1 233 TYR 233 401 401 TYR TYR B . n B 1 234 VAL 234 402 402 VAL VAL B . n B 1 235 ARG 235 403 403 ARG ARG B . n B 1 236 ALA 236 404 404 ALA ALA B . n B 1 237 LEU 237 405 405 LEU LEU B . n B 1 238 ASP 238 406 406 ASP ASP B . n B 1 239 LEU 239 407 407 LEU LEU B . n B 1 240 SER 240 408 408 SER SER B . n B 1 241 PHE 241 409 409 PHE PHE B . n B 1 242 SER 242 410 410 SER SER B . n B 1 243 VAL 243 411 411 VAL VAL B . n B 1 244 SER 244 412 412 SER SER B . n B 1 245 PHE 245 413 413 PHE PHE B . n B 1 246 TRP 246 414 414 TRP TRP B . n B 1 247 TRP 247 415 415 TRP TRP B . n B 1 248 SER 248 416 416 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1660 ? 1 MORE -26 ? 1 'SSA (A^2)' 22170 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 155 ? A ASP 323 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O1 ? D AKG . ? A AKG 601 ? 1_555 83.7 ? 2 OD2 ? A ASP 155 ? A ASP 323 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 NE2 ? A HIS 153 ? A HIS 321 ? 1_555 110.6 ? 3 O1 ? D AKG . ? A AKG 601 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 NE2 ? A HIS 153 ? A HIS 321 ? 1_555 165.7 ? 4 OD2 ? A ASP 155 ? A ASP 323 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O5 ? D AKG . ? A AKG 601 ? 1_555 167.6 ? 5 O1 ? D AKG . ? A AKG 601 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O5 ? D AKG . ? A AKG 601 ? 1_555 84.0 ? 6 NE2 ? A HIS 153 ? A HIS 321 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O5 ? D AKG . ? A AKG 601 ? 1_555 81.6 ? 7 OD2 ? A ASP 155 ? A ASP 323 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 NE2 ? A HIS 232 ? A HIS 400 ? 1_555 82.7 ? 8 O1 ? D AKG . ? A AKG 601 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 NE2 ? A HIS 232 ? A HIS 400 ? 1_555 97.1 ? 9 NE2 ? A HIS 153 ? A HIS 321 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 NE2 ? A HIS 232 ? A HIS 400 ? 1_555 83.7 ? 10 O5 ? D AKG . ? A AKG 601 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 NE2 ? A HIS 232 ? A HIS 400 ? 1_555 96.7 ? 11 OD2 ? A ASP 155 ? A ASP 323 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O ? G HOH . ? A HOH 5 ? 1_555 88.6 ? 12 O1 ? D AKG . ? A AKG 601 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O ? G HOH . ? A HOH 5 ? 1_555 94.7 ? 13 NE2 ? A HIS 153 ? A HIS 321 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O ? G HOH . ? A HOH 5 ? 1_555 87.4 ? 14 O5 ? D AKG . ? A AKG 601 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O ? G HOH . ? A HOH 5 ? 1_555 94.5 ? 15 NE2 ? A HIS 232 ? A HIS 400 ? 1_555 NI ? C NI . ? A NI 501 ? 1_555 O ? G HOH . ? A HOH 5 ? 1_555 164.5 ? 16 NE2 ? B HIS 153 ? B HIS 321 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 OD2 ? B ASP 155 ? B ASP 323 ? 1_555 113.5 ? 17 NE2 ? B HIS 153 ? B HIS 321 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O5 ? F AKG . ? B AKG 601 ? 1_555 84.8 ? 18 OD2 ? B ASP 155 ? B ASP 323 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O5 ? F AKG . ? B AKG 601 ? 1_555 161.5 ? 19 NE2 ? B HIS 153 ? B HIS 321 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O1 ? F AKG . ? B AKG 601 ? 1_555 164.1 ? 20 OD2 ? B ASP 155 ? B ASP 323 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O1 ? F AKG . ? B AKG 601 ? 1_555 81.6 ? 21 O5 ? F AKG . ? B AKG 601 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O1 ? F AKG . ? B AKG 601 ? 1_555 80.5 ? 22 NE2 ? B HIS 153 ? B HIS 321 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 NE2 ? B HIS 232 ? B HIS 400 ? 1_555 83.6 ? 23 OD2 ? B ASP 155 ? B ASP 323 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 NE2 ? B HIS 232 ? B HIS 400 ? 1_555 84.2 ? 24 O5 ? F AKG . ? B AKG 601 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 NE2 ? B HIS 232 ? B HIS 400 ? 1_555 95.7 ? 25 O1 ? F AKG . ? B AKG 601 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 NE2 ? B HIS 232 ? B HIS 400 ? 1_555 103.6 ? 26 NE2 ? B HIS 153 ? B HIS 321 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O ? H HOH . ? B HOH 19 ? 1_555 81.8 ? 27 OD2 ? B ASP 155 ? B ASP 323 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O ? H HOH . ? B HOH 19 ? 1_555 95.2 ? 28 O5 ? F AKG . ? B AKG 601 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O ? H HOH . ? B HOH 19 ? 1_555 89.9 ? 29 O1 ? F AKG . ? B AKG 601 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O ? H HOH . ? B HOH 19 ? 1_555 92.2 ? 30 NE2 ? B HIS 232 ? B HIS 400 ? 1_555 NI ? E NI . ? B NI 501 ? 1_555 O ? H HOH . ? B HOH 19 ? 1_555 163.9 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2011-12-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 SOLVE phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.4_486)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 189 ? ? 38.99 55.51 2 1 PHE A 199 ? ? -132.79 -50.60 3 1 ARG A 242 ? ? -90.16 42.20 4 1 ASN A 265 ? ? 54.32 -131.61 5 1 ARG B 189 ? ? 36.95 53.69 6 1 PHE B 199 ? ? -137.99 -44.33 7 1 ARG B 242 ? ? -87.06 36.19 8 1 VAL B 264 ? ? -102.58 -63.61 9 1 TYR B 350 ? ? 36.43 61.59 10 1 PRO B 351 ? ? -59.84 177.19 11 1 LYS B 397 ? ? 66.60 -8.32 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 266 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 267 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -147.48 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 169 ? A GLY 1 2 1 Y 1 A SER 170 ? A SER 2 3 1 Y 1 A HIS 171 ? A HIS 3 4 1 Y 1 A MET 172 ? A MET 4 5 1 Y 1 A ASP 353 ? A ASP 185 6 1 Y 1 A THR 354 ? A THR 186 7 1 Y 1 A HIS 355 ? A HIS 187 8 1 Y 1 A LEU 356 ? A LEU 188 9 1 Y 1 A LEU 357 ? A LEU 189 10 1 Y 1 A HIS 358 ? A HIS 190 11 1 Y 1 B GLY 169 ? B GLY 1 12 1 Y 1 B SER 170 ? B SER 2 13 1 Y 1 B HIS 171 ? B HIS 3 14 1 Y 1 B MET 172 ? B MET 4 15 1 Y 1 B GLY 173 ? B GLY 5 16 1 Y 1 B LEU 174 ? B LEU 6 17 1 Y 1 B ILE 175 ? B ILE 7 18 1 Y 1 B PRO 176 ? B PRO 8 19 1 Y 1 B ASP 177 ? B ASP 9 20 1 Y 1 B VAL 178 ? B VAL 10 21 1 Y 1 B LYS 179 ? B LYS 11 22 1 Y 1 B LEU 180 ? B LEU 12 23 1 Y 1 B ASP 353 ? B ASP 185 24 1 Y 1 B THR 354 ? B THR 186 25 1 Y 1 B HIS 355 ? B HIS 187 26 1 Y 1 B LEU 356 ? B LEU 188 27 1 Y 1 B LEU 357 ? B LEU 189 28 1 Y 1 B HIS 358 ? B HIS 190 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 '2-OXOGLUTARIC ACID' AKG 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI 1 501 501 NI NI A . D 3 AKG 1 601 601 AKG AKG A . E 2 NI 1 501 501 NI NI B . F 3 AKG 1 601 601 AKG AKG B . G 4 HOH 1 1 1 HOH HOH A . G 4 HOH 2 2 2 HOH HOH A . G 4 HOH 3 3 3 HOH HOH A . G 4 HOH 4 5 5 HOH HOH A . G 4 HOH 5 6 6 HOH HOH A . G 4 HOH 6 7 7 HOH HOH A . G 4 HOH 7 8 8 HOH HOH A . G 4 HOH 8 11 11 HOH HOH A . G 4 HOH 9 14 14 HOH HOH A . G 4 HOH 10 18 18 HOH HOH A . G 4 HOH 11 21 21 HOH HOH A . G 4 HOH 12 22 22 HOH HOH A . G 4 HOH 13 23 23 HOH HOH A . G 4 HOH 14 24 24 HOH HOH A . G 4 HOH 15 25 25 HOH HOH A . G 4 HOH 16 27 27 HOH HOH A . G 4 HOH 17 28 28 HOH HOH A . G 4 HOH 18 30 30 HOH HOH A . G 4 HOH 19 33 33 HOH HOH A . G 4 HOH 20 34 34 HOH HOH A . G 4 HOH 21 37 37 HOH HOH A . G 4 HOH 22 38 38 HOH HOH A . G 4 HOH 23 41 41 HOH HOH A . G 4 HOH 24 43 43 HOH HOH A . G 4 HOH 25 44 44 HOH HOH A . G 4 HOH 26 45 45 HOH HOH A . G 4 HOH 27 46 46 HOH HOH A . G 4 HOH 28 50 50 HOH HOH A . G 4 HOH 29 53 53 HOH HOH A . G 4 HOH 30 54 54 HOH HOH A . G 4 HOH 31 56 56 HOH HOH A . G 4 HOH 32 57 57 HOH HOH A . G 4 HOH 33 58 58 HOH HOH A . G 4 HOH 34 59 59 HOH HOH A . G 4 HOH 35 60 60 HOH HOH A . G 4 HOH 36 62 62 HOH HOH A . G 4 HOH 37 63 63 HOH HOH A . G 4 HOH 38 64 64 HOH HOH A . G 4 HOH 39 66 66 HOH HOH A . G 4 HOH 40 69 69 HOH HOH A . G 4 HOH 41 72 72 HOH HOH A . G 4 HOH 42 77 77 HOH HOH A . G 4 HOH 43 78 78 HOH HOH A . G 4 HOH 44 79 79 HOH HOH A . G 4 HOH 45 80 80 HOH HOH A . G 4 HOH 46 81 81 HOH HOH A . G 4 HOH 47 83 83 HOH HOH A . G 4 HOH 48 84 84 HOH HOH A . G 4 HOH 49 88 88 HOH HOH A . G 4 HOH 50 89 89 HOH HOH A . G 4 HOH 51 90 90 HOH HOH A . G 4 HOH 52 91 91 HOH HOH A . G 4 HOH 53 92 92 HOH HOH A . G 4 HOH 54 93 93 HOH HOH A . G 4 HOH 55 94 94 HOH HOH A . G 4 HOH 56 95 95 HOH HOH A . G 4 HOH 57 96 96 HOH HOH A . G 4 HOH 58 97 97 HOH HOH A . G 4 HOH 59 98 98 HOH HOH A . G 4 HOH 60 99 99 HOH HOH A . G 4 HOH 61 100 100 HOH HOH A . G 4 HOH 62 105 105 HOH HOH A . G 4 HOH 63 106 106 HOH HOH A . G 4 HOH 64 107 107 HOH HOH A . G 4 HOH 65 108 108 HOH HOH A . G 4 HOH 66 110 110 HOH HOH A . G 4 HOH 67 111 111 HOH HOH A . G 4 HOH 68 112 112 HOH HOH A . G 4 HOH 69 113 113 HOH HOH A . G 4 HOH 70 115 115 HOH HOH A . G 4 HOH 71 116 116 HOH HOH A . G 4 HOH 72 119 119 HOH HOH A . G 4 HOH 73 120 120 HOH HOH A . G 4 HOH 74 121 121 HOH HOH A . G 4 HOH 75 122 122 HOH HOH A . G 4 HOH 76 123 123 HOH HOH A . G 4 HOH 77 125 125 HOH HOH A . G 4 HOH 78 126 126 HOH HOH A . G 4 HOH 79 128 128 HOH HOH A . G 4 HOH 80 130 130 HOH HOH A . G 4 HOH 81 133 133 HOH HOH A . G 4 HOH 82 134 134 HOH HOH A . G 4 HOH 83 136 136 HOH HOH A . G 4 HOH 84 137 137 HOH HOH A . G 4 HOH 85 138 138 HOH HOH A . G 4 HOH 86 139 139 HOH HOH A . G 4 HOH 87 141 141 HOH HOH A . G 4 HOH 88 143 143 HOH HOH A . G 4 HOH 89 147 147 HOH HOH A . G 4 HOH 90 148 148 HOH HOH A . G 4 HOH 91 149 149 HOH HOH A . G 4 HOH 92 152 152 HOH HOH A . G 4 HOH 93 154 154 HOH HOH A . G 4 HOH 94 156 156 HOH HOH A . G 4 HOH 95 157 157 HOH HOH A . G 4 HOH 96 158 158 HOH HOH A . G 4 HOH 97 159 159 HOH HOH A . G 4 HOH 98 162 162 HOH HOH A . G 4 HOH 99 164 164 HOH HOH A . G 4 HOH 100 417 169 HOH HOH A . G 4 HOH 101 418 170 HOH HOH A . G 4 HOH 102 419 171 HOH HOH A . G 4 HOH 103 420 172 HOH HOH A . G 4 HOH 104 421 173 HOH HOH A . G 4 HOH 105 422 174 HOH HOH A . G 4 HOH 106 423 177 HOH HOH A . G 4 HOH 107 424 179 HOH HOH A . G 4 HOH 108 425 180 HOH HOH A . G 4 HOH 109 426 181 HOH HOH A . G 4 HOH 110 427 183 HOH HOH A . G 4 HOH 111 428 184 HOH HOH A . G 4 HOH 112 429 185 HOH HOH A . G 4 HOH 113 430 188 HOH HOH A . G 4 HOH 114 431 193 HOH HOH A . G 4 HOH 115 432 194 HOH HOH A . G 4 HOH 116 433 195 HOH HOH A . G 4 HOH 117 434 196 HOH HOH A . G 4 HOH 118 435 197 HOH HOH A . G 4 HOH 119 436 198 HOH HOH A . G 4 HOH 120 437 199 HOH HOH A . G 4 HOH 121 438 200 HOH HOH A . G 4 HOH 122 439 201 HOH HOH A . G 4 HOH 123 440 202 HOH HOH A . G 4 HOH 124 441 205 HOH HOH A . G 4 HOH 125 442 206 HOH HOH A . G 4 HOH 126 443 207 HOH HOH A . G 4 HOH 127 444 209 HOH HOH A . H 4 HOH 1 4 4 HOH HOH B . H 4 HOH 2 9 9 HOH HOH B . H 4 HOH 3 10 10 HOH HOH B . H 4 HOH 4 12 12 HOH HOH B . H 4 HOH 5 13 13 HOH HOH B . H 4 HOH 6 15 15 HOH HOH B . H 4 HOH 7 16 16 HOH HOH B . H 4 HOH 8 17 17 HOH HOH B . H 4 HOH 9 19 19 HOH HOH B . H 4 HOH 10 20 20 HOH HOH B . H 4 HOH 11 26 26 HOH HOH B . H 4 HOH 12 29 29 HOH HOH B . H 4 HOH 13 31 31 HOH HOH B . H 4 HOH 14 32 32 HOH HOH B . H 4 HOH 15 35 35 HOH HOH B . H 4 HOH 16 36 36 HOH HOH B . H 4 HOH 17 39 39 HOH HOH B . H 4 HOH 18 40 40 HOH HOH B . H 4 HOH 19 42 42 HOH HOH B . H 4 HOH 20 47 47 HOH HOH B . H 4 HOH 21 48 48 HOH HOH B . H 4 HOH 22 49 49 HOH HOH B . H 4 HOH 23 51 51 HOH HOH B . H 4 HOH 24 52 52 HOH HOH B . H 4 HOH 25 55 55 HOH HOH B . H 4 HOH 26 61 61 HOH HOH B . H 4 HOH 27 65 65 HOH HOH B . H 4 HOH 28 67 67 HOH HOH B . H 4 HOH 29 68 68 HOH HOH B . H 4 HOH 30 70 70 HOH HOH B . H 4 HOH 31 71 71 HOH HOH B . H 4 HOH 32 73 73 HOH HOH B . H 4 HOH 33 74 74 HOH HOH B . H 4 HOH 34 75 75 HOH HOH B . H 4 HOH 35 76 76 HOH HOH B . H 4 HOH 36 82 82 HOH HOH B . H 4 HOH 37 85 85 HOH HOH B . H 4 HOH 38 86 86 HOH HOH B . H 4 HOH 39 87 87 HOH HOH B . H 4 HOH 40 101 101 HOH HOH B . H 4 HOH 41 102 102 HOH HOH B . H 4 HOH 42 103 103 HOH HOH B . H 4 HOH 43 104 104 HOH HOH B . H 4 HOH 44 109 109 HOH HOH B . H 4 HOH 45 114 114 HOH HOH B . H 4 HOH 46 117 117 HOH HOH B . H 4 HOH 47 118 118 HOH HOH B . H 4 HOH 48 124 124 HOH HOH B . H 4 HOH 49 127 127 HOH HOH B . H 4 HOH 50 129 129 HOH HOH B . H 4 HOH 51 131 131 HOH HOH B . H 4 HOH 52 132 132 HOH HOH B . H 4 HOH 53 135 135 HOH HOH B . H 4 HOH 54 140 140 HOH HOH B . H 4 HOH 55 142 142 HOH HOH B . H 4 HOH 56 144 144 HOH HOH B . H 4 HOH 57 145 145 HOH HOH B . H 4 HOH 58 146 146 HOH HOH B . H 4 HOH 59 150 150 HOH HOH B . H 4 HOH 60 151 151 HOH HOH B . H 4 HOH 61 153 153 HOH HOH B . H 4 HOH 62 155 155 HOH HOH B . H 4 HOH 63 160 160 HOH HOH B . H 4 HOH 64 161 161 HOH HOH B . H 4 HOH 65 163 163 HOH HOH B . H 4 HOH 66 165 165 HOH HOH B . H 4 HOH 67 166 166 HOH HOH B . H 4 HOH 68 167 167 HOH HOH B . H 4 HOH 69 168 168 HOH HOH B . H 4 HOH 70 417 175 HOH HOH B . H 4 HOH 71 418 176 HOH HOH B . H 4 HOH 72 419 178 HOH HOH B . H 4 HOH 73 420 182 HOH HOH B . H 4 HOH 74 421 186 HOH HOH B . H 4 HOH 75 422 187 HOH HOH B . H 4 HOH 76 423 189 HOH HOH B . H 4 HOH 77 424 190 HOH HOH B . H 4 HOH 78 425 191 HOH HOH B . H 4 HOH 79 426 192 HOH HOH B . H 4 HOH 80 427 203 HOH HOH B . H 4 HOH 81 428 204 HOH HOH B . H 4 HOH 82 429 208 HOH HOH B . #