data_3UYM # _entry.id 3UYM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3UYM RCSB RCSB069372 WWPDB D_1000069372 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2013-05-15 _pdbx_database_PDB_obs_spr.pdb_id 4K0U _pdbx_database_PDB_obs_spr.replace_pdb_id 3UYM _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3UTK _pdbx_database_related.details 'Pilotin structure' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3UYM _pdbx_database_status.recvd_initial_deposition_date 2011-12-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rehman, S.' 1 'Pickersgill, R.' 2 # _citation.id primary _citation.title 'Structural and Functional Insights into the Pilotin-Secretin Complex of the Type II Secretion System.' _citation.journal_abbrev 'Plos Pathog.' _citation.journal_volume 8 _citation.page_first e1002531 _citation.page_last e1002531 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1553-7366 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22346756 _citation.pdbx_database_id_DOI 10.1371/journal.ppat.1002531 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gu, S.' 1 primary 'Rehman, S.' 2 primary 'Wang, X.' 3 primary 'Shevchik, V.E.' 4 primary 'Pickersgill, R.W.' 5 # _cell.entry_id 3UYM _cell.length_a 53.545 _cell.length_b 53.545 _cell.length_c 142.251 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UYM _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Lipoprotein outS' 14349.450 2 ? ? ? ? 2 polymer syn 'General secretion pathway protein D' 1850.983 2 ? ? 'UNP residues 693-705' ? 3 water nat water 18.015 52 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Pectic enzymes secretion protein outD' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MHVSSLKVVLFGVCCLSLAACQTPAPVKNTASRSAASVPANEQISQLASLVAASKYLRVQCERSDLPDDGTILKTAVNVA VQKGWDTGRYQSLPQLSENLYQGLLKDGTPKATQCSSFNRTMTPFLDAMRTVR ; ;MHVSSLKVVLFGVCCLSLAACQTPAPVKNTASRSAASVPANEQISQLASLVAASKYLRVQCERSDLPDDGTILKTAVNVA VQKGWDTGRYQSLPQLSENLYQGLLKDGTPKATQCSSFNRTMTPFLDAMRTVR ; A,B ? 2 'polypeptide(L)' no no RTFRQVQSSISDFYD RTFRQVQSSISDFYD C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 VAL n 1 4 SER n 1 5 SER n 1 6 LEU n 1 7 LYS n 1 8 VAL n 1 9 VAL n 1 10 LEU n 1 11 PHE n 1 12 GLY n 1 13 VAL n 1 14 CYS n 1 15 CYS n 1 16 LEU n 1 17 SER n 1 18 LEU n 1 19 ALA n 1 20 ALA n 1 21 CYS n 1 22 GLN n 1 23 THR n 1 24 PRO n 1 25 ALA n 1 26 PRO n 1 27 VAL n 1 28 LYS n 1 29 ASN n 1 30 THR n 1 31 ALA n 1 32 SER n 1 33 ARG n 1 34 SER n 1 35 ALA n 1 36 ALA n 1 37 SER n 1 38 VAL n 1 39 PRO n 1 40 ALA n 1 41 ASN n 1 42 GLU n 1 43 GLN n 1 44 ILE n 1 45 SER n 1 46 GLN n 1 47 LEU n 1 48 ALA n 1 49 SER n 1 50 LEU n 1 51 VAL n 1 52 ALA n 1 53 ALA n 1 54 SER n 1 55 LYS n 1 56 TYR n 1 57 LEU n 1 58 ARG n 1 59 VAL n 1 60 GLN n 1 61 CYS n 1 62 GLU n 1 63 ARG n 1 64 SER n 1 65 ASP n 1 66 LEU n 1 67 PRO n 1 68 ASP n 1 69 ASP n 1 70 GLY n 1 71 THR n 1 72 ILE n 1 73 LEU n 1 74 LYS n 1 75 THR n 1 76 ALA n 1 77 VAL n 1 78 ASN n 1 79 VAL n 1 80 ALA n 1 81 VAL n 1 82 GLN n 1 83 LYS n 1 84 GLY n 1 85 TRP n 1 86 ASP n 1 87 THR n 1 88 GLY n 1 89 ARG n 1 90 TYR n 1 91 GLN n 1 92 SER n 1 93 LEU n 1 94 PRO n 1 95 GLN n 1 96 LEU n 1 97 SER n 1 98 GLU n 1 99 ASN n 1 100 LEU n 1 101 TYR n 1 102 GLN n 1 103 GLY n 1 104 LEU n 1 105 LEU n 1 106 LYS n 1 107 ASP n 1 108 GLY n 1 109 THR n 1 110 PRO n 1 111 LYS n 1 112 ALA n 1 113 THR n 1 114 GLN n 1 115 CYS n 1 116 SER n 1 117 SER n 1 118 PHE n 1 119 ASN n 1 120 ARG n 1 121 THR n 1 122 MET n 1 123 THR n 1 124 PRO n 1 125 PHE n 1 126 LEU n 1 127 ASP n 1 128 ALA n 1 129 MET n 1 130 ARG n 1 131 THR n 1 132 VAL n 1 133 ARG n 2 1 ARG n 2 2 THR n 2 3 PHE n 2 4 ARG n 2 5 GLN n 2 6 VAL n 2 7 GLN n 2 8 SER n 2 9 SER n 2 10 ILE n 2 11 SER n 2 12 ASP n 2 13 PHE n 2 14 TYR n 2 15 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'outS, Dda3937_02411' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 3937 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Dickeya dadantii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198628 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Dickeya dadantii' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 198628 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP OUTS_DICD3 Q01567 1 ;MHVSSLKVVLFGVCCLSLAACQTPAPVKNTASRSAASVPANEQISQLASLVAASKYLRVQCERSDLPDDGTILKTAVNVA VQKGWDTGRYQSLPQLSENLYQGLLKDGTPKATQCSSFNRTMTPFLDAMRTVR ; 1 ? 2 UNP GSPD2_DICD3 Q01565 2 TFRQVQSSISDFY 693 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UYM A 1 ? 133 ? Q01567 1 ? 133 ? 1 133 2 1 3UYM B 1 ? 133 ? Q01567 1 ? 133 ? 1 133 3 2 3UYM C 3 ? 15 ? Q01565 693 ? 705 ? 3 15 4 2 3UYM D 3 ? 15 ? Q01565 693 ? 705 ? 3 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UYM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.85 _exptl_crystal.density_percent_sol 33.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;Crystals of the complex were grown using a 1.0:1.1 molar ratio of pilotin:secretin peptide and crystallized using a reservoir of 2M ammonium sulphate, 0.1 M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-10-09 _diffrn_detector.details 'Silicon monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0718 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0718 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 3UYM _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 46.55 _reflns.d_resolution_high 2.00 _reflns.number_obs 13345 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rsym_value 0.098 _reflns.pdbx_netI_over_sigmaI 13.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.16 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.354 _reflns_shell.pdbx_Rsym_value 0.354 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3UYM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13320 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.371 _refine.ls_d_res_high 2.107 _refine.ls_percent_reflns_obs 99.79 _refine.ls_R_factor_obs 0.1985 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1982 _refine.ls_R_factor_R_free 0.2513 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.93 _refine.ls_number_reflns_R_free 657 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.000 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 9.2871 _refine.aniso_B[2][2] 9.2871 _refine.aniso_B[3][3] -18.5741 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.368 _refine.solvent_model_param_bsol 40.179 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 3UTK _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values TWIN_LSQ_F _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML . _refine.pdbx_overall_phase_error 27.69 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1694 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1746 _refine_hist.d_res_high 2.107 _refine_hist.d_res_low 46.371 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 1722 'X-RAY DIFFRACTION' ? f_angle_d 0.891 ? ? 2330 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 14.266 ? ? 638 'X-RAY DIFFRACTION' ? f_chiral_restr 0.053 ? ? 270 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 302 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.107 2.2706 2519 0.2828 95.00 0.3157 . . 123 . . . . 'X-RAY DIFFRACTION' . 2.2706 2.4985 2507 0.2294 94.00 0.2497 . . 150 . . . . 'X-RAY DIFFRACTION' . 2.4985 2.8586 2498 0.2178 94.00 0.2482 . . 150 . . . . 'X-RAY DIFFRACTION' . 2.8586 3.5963 2539 0.1930 95.00 0.2686 . . 125 . . . . 'X-RAY DIFFRACTION' . 3.5963 17.3958 2565 0.1624 96.00 0.2436 . . 108 . . . . # _struct.entry_id 3UYM _struct.title 'Secretin - Pilotin Complex' _struct.pdbx_descriptor 'Lipoprotein outS, General secretion pathway protein D' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UYM _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Nested alpha-helical hairpins, Protein transport, Pilotin, Secretin peptide' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 39 ? CYS A 61 ? PRO A 39 CYS A 61 1 ? 23 HELX_P HELX_P2 2 ASP A 68 ? LYS A 83 ? ASP A 68 LYS A 83 1 ? 16 HELX_P HELX_P3 3 ASP A 86 ? TYR A 90 ? ASP A 86 TYR A 90 5 ? 5 HELX_P HELX_P4 4 SER A 92 ? LYS A 106 ? SER A 92 LYS A 106 1 ? 15 HELX_P HELX_P5 5 PRO A 110 ? MET A 122 ? PRO A 110 MET A 122 1 ? 13 HELX_P HELX_P6 6 MET A 122 ? ARG A 130 ? MET A 122 ARG A 130 1 ? 9 HELX_P HELX_P7 7 PRO B 39 ? GLN B 60 ? PRO B 39 GLN B 60 1 ? 22 HELX_P HELX_P8 8 ASP B 68 ? LYS B 83 ? ASP B 68 LYS B 83 1 ? 16 HELX_P HELX_P9 9 ASP B 86 ? TYR B 90 ? ASP B 86 TYR B 90 5 ? 5 HELX_P HELX_P10 10 SER B 92 ? ASP B 107 ? SER B 92 ASP B 107 1 ? 16 HELX_P HELX_P11 11 PRO B 110 ? MET B 122 ? PRO B 110 MET B 122 1 ? 13 HELX_P HELX_P12 12 MET B 122 ? ARG B 130 ? MET B 122 ARG B 130 1 ? 9 HELX_P HELX_P13 13 THR C 2 ? TYR C 14 ? THR C 2 TYR C 14 1 ? 13 HELX_P HELX_P14 14 THR D 2 ? TYR D 14 ? THR D 2 TYR D 14 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 61 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 61 A CYS 115 1_555 ? ? ? ? ? ? ? 2.031 ? disulf2 disulf ? ? B CYS 61 SG ? ? ? 1_555 B CYS 115 SG ? ? B CYS 61 B CYS 115 1_555 ? ? ? ? ? ? ? 2.030 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3UYM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UYM _atom_sites.fract_transf_matrix[1][1] 0.018676 _atom_sites.fract_transf_matrix[1][2] 0.010783 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021565 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007030 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 VAL 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 LEU 6 6 ? ? ? A . n A 1 7 LYS 7 7 ? ? ? A . n A 1 8 VAL 8 8 ? ? ? A . n A 1 9 VAL 9 9 ? ? ? A . n A 1 10 LEU 10 10 ? ? ? A . n A 1 11 PHE 11 11 ? ? ? A . n A 1 12 GLY 12 12 ? ? ? A . n A 1 13 VAL 13 13 ? ? ? A . n A 1 14 CYS 14 14 ? ? ? A . n A 1 15 CYS 15 15 ? ? ? A . n A 1 16 LEU 16 16 ? ? ? A . n A 1 17 SER 17 17 ? ? ? A . n A 1 18 LEU 18 18 ? ? ? A . n A 1 19 ALA 19 19 ? ? ? A . n A 1 20 ALA 20 20 ? ? ? A . n A 1 21 CYS 21 21 ? ? ? A . n A 1 22 GLN 22 22 ? ? ? A . n A 1 23 THR 23 23 ? ? ? A . n A 1 24 PRO 24 24 ? ? ? A . n A 1 25 ALA 25 25 ? ? ? A . n A 1 26 PRO 26 26 ? ? ? A . n A 1 27 VAL 27 27 ? ? ? A . n A 1 28 LYS 28 28 ? ? ? A . n A 1 29 ASN 29 29 ? ? ? A . n A 1 30 THR 30 30 ? ? ? A . n A 1 31 ALA 31 31 ? ? ? A . n A 1 32 SER 32 32 ? ? ? A . n A 1 33 ARG 33 33 ? ? ? A . n A 1 34 SER 34 34 ? ? ? A . n A 1 35 ALA 35 35 ? ? ? A . n A 1 36 ALA 36 36 ? ? ? A . n A 1 37 SER 37 37 ? ? ? A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 CYS 61 61 61 CYS CYS A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 TRP 85 85 85 TRP TRP A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 MET 122 122 122 MET MET A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 MET 129 129 129 MET MET A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ARG 133 133 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 HIS 2 2 ? ? ? B . n B 1 3 VAL 3 3 ? ? ? B . n B 1 4 SER 4 4 ? ? ? B . n B 1 5 SER 5 5 ? ? ? B . n B 1 6 LEU 6 6 ? ? ? B . n B 1 7 LYS 7 7 ? ? ? B . n B 1 8 VAL 8 8 ? ? ? B . n B 1 9 VAL 9 9 ? ? ? B . n B 1 10 LEU 10 10 ? ? ? B . n B 1 11 PHE 11 11 ? ? ? B . n B 1 12 GLY 12 12 ? ? ? B . n B 1 13 VAL 13 13 ? ? ? B . n B 1 14 CYS 14 14 ? ? ? B . n B 1 15 CYS 15 15 ? ? ? B . n B 1 16 LEU 16 16 ? ? ? B . n B 1 17 SER 17 17 ? ? ? B . n B 1 18 LEU 18 18 ? ? ? B . n B 1 19 ALA 19 19 ? ? ? B . n B 1 20 ALA 20 20 ? ? ? B . n B 1 21 CYS 21 21 ? ? ? B . n B 1 22 GLN 22 22 ? ? ? B . n B 1 23 THR 23 23 ? ? ? B . n B 1 24 PRO 24 24 ? ? ? B . n B 1 25 ALA 25 25 ? ? ? B . n B 1 26 PRO 26 26 ? ? ? B . n B 1 27 VAL 27 27 ? ? ? B . n B 1 28 LYS 28 28 ? ? ? B . n B 1 29 ASN 29 29 ? ? ? B . n B 1 30 THR 30 30 ? ? ? B . n B 1 31 ALA 31 31 ? ? ? B . n B 1 32 SER 32 32 ? ? ? B . n B 1 33 ARG 33 33 ? ? ? B . n B 1 34 SER 34 34 ? ? ? B . n B 1 35 ALA 35 35 ? ? ? B . n B 1 36 ALA 36 36 ? ? ? B . n B 1 37 SER 37 37 ? ? ? B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 ASN 41 41 41 ASN ASN B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 GLN 43 43 43 GLN GLN B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 SER 45 45 45 SER SER B . n B 1 46 GLN 46 46 46 GLN GLN B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 SER 49 49 49 SER SER B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 VAL 51 51 51 VAL VAL B . n B 1 52 ALA 52 52 52 ALA ALA B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 SER 54 54 54 SER SER B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 TYR 56 56 56 TYR TYR B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 ARG 58 58 58 ARG ARG B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 GLN 60 60 60 GLN GLN B . n B 1 61 CYS 61 61 61 CYS CYS B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 ARG 63 63 63 ARG ARG B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 ASP 65 65 65 ASP ASP B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 PRO 67 67 67 PRO PRO B . n B 1 68 ASP 68 68 68 ASP ASP B . n B 1 69 ASP 69 69 69 ASP ASP B . n B 1 70 GLY 70 70 70 GLY GLY B . n B 1 71 THR 71 71 71 THR THR B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 LYS 74 74 74 LYS LYS B . n B 1 75 THR 75 75 75 THR THR B . n B 1 76 ALA 76 76 76 ALA ALA B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 ASN 78 78 78 ASN ASN B . n B 1 79 VAL 79 79 79 VAL VAL B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 GLN 82 82 82 GLN GLN B . n B 1 83 LYS 83 83 83 LYS LYS B . n B 1 84 GLY 84 84 84 GLY GLY B . n B 1 85 TRP 85 85 85 TRP TRP B . n B 1 86 ASP 86 86 86 ASP ASP B . n B 1 87 THR 87 87 87 THR THR B . n B 1 88 GLY 88 88 88 GLY GLY B . n B 1 89 ARG 89 89 89 ARG ARG B . n B 1 90 TYR 90 90 90 TYR TYR B . n B 1 91 GLN 91 91 91 GLN GLN B . n B 1 92 SER 92 92 92 SER SER B . n B 1 93 LEU 93 93 93 LEU LEU B . n B 1 94 PRO 94 94 94 PRO PRO B . n B 1 95 GLN 95 95 95 GLN GLN B . n B 1 96 LEU 96 96 96 LEU LEU B . n B 1 97 SER 97 97 97 SER SER B . n B 1 98 GLU 98 98 98 GLU GLU B . n B 1 99 ASN 99 99 99 ASN ASN B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 TYR 101 101 101 TYR TYR B . n B 1 102 GLN 102 102 102 GLN GLN B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 LEU 104 104 104 LEU LEU B . n B 1 105 LEU 105 105 105 LEU LEU B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 ASP 107 107 107 ASP ASP B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 THR 109 109 109 THR THR B . n B 1 110 PRO 110 110 110 PRO PRO B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 THR 113 113 113 THR THR B . n B 1 114 GLN 114 114 114 GLN GLN B . n B 1 115 CYS 115 115 115 CYS CYS B . n B 1 116 SER 116 116 116 SER SER B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 PHE 118 118 118 PHE PHE B . n B 1 119 ASN 119 119 119 ASN ASN B . n B 1 120 ARG 120 120 120 ARG ARG B . n B 1 121 THR 121 121 121 THR THR B . n B 1 122 MET 122 122 122 MET MET B . n B 1 123 THR 123 123 123 THR THR B . n B 1 124 PRO 124 124 124 PRO PRO B . n B 1 125 PHE 125 125 125 PHE PHE B . n B 1 126 LEU 126 126 126 LEU LEU B . n B 1 127 ASP 127 127 127 ASP ASP B . n B 1 128 ALA 128 128 128 ALA ALA B . n B 1 129 MET 129 129 129 MET MET B . n B 1 130 ARG 130 130 130 ARG ARG B . n B 1 131 THR 131 131 131 THR THR B . n B 1 132 VAL 132 132 132 VAL VAL B . n B 1 133 ARG 133 133 ? ? ? B . n C 2 1 ARG 1 1 1 ARG ARG C . n C 2 2 THR 2 2 2 THR THR C . n C 2 3 PHE 3 3 3 PHE PHE C . n C 2 4 ARG 4 4 4 ARG ARG C . n C 2 5 GLN 5 5 5 GLN GLN C . n C 2 6 VAL 6 6 6 VAL VAL C . n C 2 7 GLN 7 7 7 GLN GLN C . n C 2 8 SER 8 8 8 SER SER C . n C 2 9 SER 9 9 9 SER SER C . n C 2 10 ILE 10 10 10 ILE ILE C . n C 2 11 SER 11 11 11 SER SER C . n C 2 12 ASP 12 12 12 ASP ASP C . n C 2 13 PHE 13 13 13 PHE PHE C . n C 2 14 TYR 14 14 14 TYR TYR C . n C 2 15 ASP 15 15 ? ? ? C . n D 2 1 ARG 1 1 1 ARG ARG D . n D 2 2 THR 2 2 2 THR THR D . n D 2 3 PHE 3 3 3 PHE PHE D . n D 2 4 ARG 4 4 4 ARG ARG D . n D 2 5 GLN 5 5 5 GLN GLN D . n D 2 6 VAL 6 6 6 VAL VAL D . n D 2 7 GLN 7 7 7 GLN GLN D . n D 2 8 SER 8 8 8 SER SER D . n D 2 9 SER 9 9 9 SER SER D . n D 2 10 ILE 10 10 10 ILE ILE D . n D 2 11 SER 11 11 11 SER SER D . n D 2 12 ASP 12 12 12 ASP ASP D . n D 2 13 PHE 13 13 13 PHE PHE D . n D 2 14 TYR 14 14 14 TYR TYR D . n D 2 15 ASP 15 15 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 201 5 HOH HOH A . E 3 HOH 2 202 6 HOH HOH A . E 3 HOH 3 203 7 HOH HOH A . E 3 HOH 4 204 8 HOH HOH A . E 3 HOH 5 205 9 HOH HOH A . E 3 HOH 6 206 10 HOH HOH A . E 3 HOH 7 207 11 HOH HOH A . E 3 HOH 8 208 12 HOH HOH A . E 3 HOH 9 209 13 HOH HOH A . E 3 HOH 10 210 14 HOH HOH A . E 3 HOH 11 211 15 HOH HOH A . E 3 HOH 12 212 16 HOH HOH A . E 3 HOH 13 213 18 HOH HOH A . E 3 HOH 14 214 19 HOH HOH A . E 3 HOH 15 215 20 HOH HOH A . E 3 HOH 16 216 21 HOH HOH A . E 3 HOH 17 217 22 HOH HOH A . E 3 HOH 18 218 23 HOH HOH A . E 3 HOH 19 219 24 HOH HOH A . E 3 HOH 20 220 25 HOH HOH A . E 3 HOH 21 221 26 HOH HOH A . E 3 HOH 22 222 27 HOH HOH A . E 3 HOH 23 223 30 HOH HOH A . E 3 HOH 24 224 31 HOH HOH A . F 3 HOH 1 201 4 HOH HOH B . F 3 HOH 2 202 17 HOH HOH B . F 3 HOH 3 203 28 HOH HOH B . F 3 HOH 4 204 29 HOH HOH B . F 3 HOH 5 205 32 HOH HOH B . F 3 HOH 6 206 33 HOH HOH B . F 3 HOH 7 207 34 HOH HOH B . F 3 HOH 8 208 35 HOH HOH B . F 3 HOH 9 209 36 HOH HOH B . F 3 HOH 10 210 37 HOH HOH B . F 3 HOH 11 211 38 HOH HOH B . F 3 HOH 12 212 39 HOH HOH B . F 3 HOH 13 213 40 HOH HOH B . F 3 HOH 14 214 41 HOH HOH B . F 3 HOH 15 215 42 HOH HOH B . F 3 HOH 16 216 43 HOH HOH B . F 3 HOH 17 217 44 HOH HOH B . F 3 HOH 18 218 45 HOH HOH B . F 3 HOH 19 219 46 HOH HOH B . F 3 HOH 20 220 47 HOH HOH B . F 3 HOH 21 221 48 HOH HOH B . F 3 HOH 22 222 49 HOH HOH B . F 3 HOH 23 223 50 HOH HOH B . F 3 HOH 24 224 51 HOH HOH B . G 3 HOH 1 101 53 HOH HOH C . G 3 HOH 2 102 54 HOH HOH C . H 3 HOH 1 101 1 HOH HOH D . H 3 HOH 2 102 3 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G 2 1 B,D,F,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1300 ? 1 MORE -11 ? 1 'SSA (A^2)' 5830 ? 2 'ABSA (A^2)' 1290 ? 2 MORE -11 ? 2 'SSA (A^2)' 5890 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2013-05-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP 'model building' . ? 2 PHENIX refinement 1.7.3_928 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 MOLREP phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 213 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 215 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 205 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 204 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 59 ? ? -98.37 -60.15 2 1 ASP A 86 ? ? -68.28 97.41 3 1 TYR A 90 ? ? -94.82 43.74 4 1 TYR B 90 ? ? -91.66 33.01 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C ARG 1 ? CG ? C ARG 1 CG 2 1 Y 1 C ARG 1 ? CD ? C ARG 1 CD 3 1 Y 1 C ARG 1 ? NE ? C ARG 1 NE 4 1 Y 1 C ARG 1 ? CZ ? C ARG 1 CZ 5 1 Y 1 C ARG 1 ? NH1 ? C ARG 1 NH1 6 1 Y 1 C ARG 1 ? NH2 ? C ARG 1 NH2 7 1 Y 1 D ARG 1 ? CG ? D ARG 1 CG 8 1 Y 1 D ARG 1 ? CD ? D ARG 1 CD 9 1 Y 1 D ARG 1 ? NE ? D ARG 1 NE 10 1 Y 1 D ARG 1 ? CZ ? D ARG 1 CZ 11 1 Y 1 D ARG 1 ? NH1 ? D ARG 1 NH1 12 1 Y 1 D ARG 1 ? NH2 ? D ARG 1 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A VAL 3 ? A VAL 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A LEU 6 ? A LEU 6 7 1 Y 1 A LYS 7 ? A LYS 7 8 1 Y 1 A VAL 8 ? A VAL 8 9 1 Y 1 A VAL 9 ? A VAL 9 10 1 Y 1 A LEU 10 ? A LEU 10 11 1 Y 1 A PHE 11 ? A PHE 11 12 1 Y 1 A GLY 12 ? A GLY 12 13 1 Y 1 A VAL 13 ? A VAL 13 14 1 Y 1 A CYS 14 ? A CYS 14 15 1 Y 1 A CYS 15 ? A CYS 15 16 1 Y 1 A LEU 16 ? A LEU 16 17 1 Y 1 A SER 17 ? A SER 17 18 1 Y 1 A LEU 18 ? A LEU 18 19 1 Y 1 A ALA 19 ? A ALA 19 20 1 Y 1 A ALA 20 ? A ALA 20 21 1 Y 1 A CYS 21 ? A CYS 21 22 1 Y 1 A GLN 22 ? A GLN 22 23 1 Y 1 A THR 23 ? A THR 23 24 1 Y 1 A PRO 24 ? A PRO 24 25 1 Y 1 A ALA 25 ? A ALA 25 26 1 Y 1 A PRO 26 ? A PRO 26 27 1 Y 1 A VAL 27 ? A VAL 27 28 1 Y 1 A LYS 28 ? A LYS 28 29 1 Y 1 A ASN 29 ? A ASN 29 30 1 Y 1 A THR 30 ? A THR 30 31 1 Y 1 A ALA 31 ? A ALA 31 32 1 Y 1 A SER 32 ? A SER 32 33 1 Y 1 A ARG 33 ? A ARG 33 34 1 Y 1 A SER 34 ? A SER 34 35 1 Y 1 A ALA 35 ? A ALA 35 36 1 Y 1 A ALA 36 ? A ALA 36 37 1 Y 1 A SER 37 ? A SER 37 38 1 Y 1 A ARG 133 ? A ARG 133 39 1 Y 1 B MET 1 ? B MET 1 40 1 Y 1 B HIS 2 ? B HIS 2 41 1 Y 1 B VAL 3 ? B VAL 3 42 1 Y 1 B SER 4 ? B SER 4 43 1 Y 1 B SER 5 ? B SER 5 44 1 Y 1 B LEU 6 ? B LEU 6 45 1 Y 1 B LYS 7 ? B LYS 7 46 1 Y 1 B VAL 8 ? B VAL 8 47 1 Y 1 B VAL 9 ? B VAL 9 48 1 Y 1 B LEU 10 ? B LEU 10 49 1 Y 1 B PHE 11 ? B PHE 11 50 1 Y 1 B GLY 12 ? B GLY 12 51 1 Y 1 B VAL 13 ? B VAL 13 52 1 Y 1 B CYS 14 ? B CYS 14 53 1 Y 1 B CYS 15 ? B CYS 15 54 1 Y 1 B LEU 16 ? B LEU 16 55 1 Y 1 B SER 17 ? B SER 17 56 1 Y 1 B LEU 18 ? B LEU 18 57 1 Y 1 B ALA 19 ? B ALA 19 58 1 Y 1 B ALA 20 ? B ALA 20 59 1 Y 1 B CYS 21 ? B CYS 21 60 1 Y 1 B GLN 22 ? B GLN 22 61 1 Y 1 B THR 23 ? B THR 23 62 1 Y 1 B PRO 24 ? B PRO 24 63 1 Y 1 B ALA 25 ? B ALA 25 64 1 Y 1 B PRO 26 ? B PRO 26 65 1 Y 1 B VAL 27 ? B VAL 27 66 1 Y 1 B LYS 28 ? B LYS 28 67 1 Y 1 B ASN 29 ? B ASN 29 68 1 Y 1 B THR 30 ? B THR 30 69 1 Y 1 B ALA 31 ? B ALA 31 70 1 Y 1 B SER 32 ? B SER 32 71 1 Y 1 B ARG 33 ? B ARG 33 72 1 Y 1 B SER 34 ? B SER 34 73 1 Y 1 B ALA 35 ? B ALA 35 74 1 Y 1 B ALA 36 ? B ALA 36 75 1 Y 1 B SER 37 ? B SER 37 76 1 Y 1 B ARG 133 ? B ARG 133 77 1 Y 1 C ASP 15 ? C ASP 15 78 1 Y 1 D ASP 15 ? D ASP 15 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #