data_3UYO # _entry.id 3UYO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3UYO pdb_00003uyo 10.2210/pdb3uyo/pdb RCSB RCSB069374 ? ? WWPDB D_1000069374 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3K2M . unspecified PDB 3NCS . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3UYO _pdbx_database_status.recvd_initial_deposition_date 2011-12-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wojcik, J.B.' 1 'Koide, A.' 2 'Koide, S.' 3 # _citation.id primary _citation.title 'Teaching an old scaffold new tricks: monobodies constructed using alternative surfaces of the FN3 scaffold.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 415 _citation.page_first 393 _citation.page_last 405 _citation.year 2012 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22198408 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2011.12.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koide, A.' 1 ? primary 'Wojcik, J.' 2 ? primary 'Gilbreth, R.N.' 3 ? primary 'Hoey, R.J.' 4 ? primary 'Koide, S.' 5 ? # _cell.entry_id 3UYO _cell.length_a 65.553 _cell.length_b 49.181 _cell.length_c 60.955 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3UYO _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein kinase ABL1' 13715.132 1 2.7.10.2 ? 'SH2 domain, UNP residues 112-232' ? 2 polymer man 'Monobody SH13' 10061.042 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 134 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Abelson murine leukemia viral oncogene homolog 1, Abelson tyrosine-protein kinase 1, Proto-oncogene c-Abl, p150' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSE SRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNY ; ;GSPSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSE SRFNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNY ; A ? 2 'polypeptide(L)' no no ;GSVSSVPTKLEVVAATPTSLLISWDAPAVTVDFYVITYGETGGNSPVQEFTVPGSKSTATISGLSPGVDYTITVYAGYSD SWNWPYSPISINYRT ; ;GSVSSVPTKLEVVAATPTSLLISWDAPAVTVDFYVITYGETGGNSPVQEFTVPGSKSTATISGLSPGVDYTITVYAGYSD SWNWPYSPISINYRT ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 SER n 1 5 ASN n 1 6 TYR n 1 7 ILE n 1 8 THR n 1 9 PRO n 1 10 VAL n 1 11 ASN n 1 12 SER n 1 13 LEU n 1 14 GLU n 1 15 LYS n 1 16 HIS n 1 17 SER n 1 18 TRP n 1 19 TYR n 1 20 HIS n 1 21 GLY n 1 22 PRO n 1 23 VAL n 1 24 SER n 1 25 ARG n 1 26 ASN n 1 27 ALA n 1 28 ALA n 1 29 GLU n 1 30 TYR n 1 31 LEU n 1 32 LEU n 1 33 SER n 1 34 SER n 1 35 GLY n 1 36 ILE n 1 37 ASN n 1 38 GLY n 1 39 SER n 1 40 PHE n 1 41 LEU n 1 42 VAL n 1 43 ARG n 1 44 GLU n 1 45 SER n 1 46 GLU n 1 47 SER n 1 48 SER n 1 49 PRO n 1 50 GLY n 1 51 GLN n 1 52 ARG n 1 53 SER n 1 54 ILE n 1 55 SER n 1 56 LEU n 1 57 ARG n 1 58 TYR n 1 59 GLU n 1 60 GLY n 1 61 ARG n 1 62 VAL n 1 63 TYR n 1 64 HIS n 1 65 TYR n 1 66 ARG n 1 67 ILE n 1 68 ASN n 1 69 THR n 1 70 ALA n 1 71 SER n 1 72 ASP n 1 73 GLY n 1 74 LYS n 1 75 LEU n 1 76 TYR n 1 77 VAL n 1 78 SER n 1 79 SER n 1 80 GLU n 1 81 SER n 1 82 ARG n 1 83 PHE n 1 84 ASN n 1 85 THR n 1 86 LEU n 1 87 ALA n 1 88 GLU n 1 89 LEU n 1 90 VAL n 1 91 HIS n 1 92 HIS n 1 93 HIS n 1 94 SER n 1 95 THR n 1 96 VAL n 1 97 ALA n 1 98 ASP n 1 99 GLY n 1 100 LEU n 1 101 ILE n 1 102 THR n 1 103 THR n 1 104 LEU n 1 105 HIS n 1 106 TYR n 1 107 PRO n 1 108 ALA n 1 109 PRO n 1 110 LYS n 1 111 ARG n 1 112 ASN n 1 113 LYS n 1 114 PRO n 1 115 THR n 1 116 VAL n 1 117 TYR n 1 118 GLY n 1 119 VAL n 1 120 SER n 1 121 PRO n 1 122 ASN n 1 123 TYR n 2 1 GLY n 2 2 SER n 2 3 VAL n 2 4 SER n 2 5 SER n 2 6 VAL n 2 7 PRO n 2 8 THR n 2 9 LYS n 2 10 LEU n 2 11 GLU n 2 12 VAL n 2 13 VAL n 2 14 ALA n 2 15 ALA n 2 16 THR n 2 17 PRO n 2 18 THR n 2 19 SER n 2 20 LEU n 2 21 LEU n 2 22 ILE n 2 23 SER n 2 24 TRP n 2 25 ASP n 2 26 ALA n 2 27 PRO n 2 28 ALA n 2 29 VAL n 2 30 THR n 2 31 VAL n 2 32 ASP n 2 33 PHE n 2 34 TYR n 2 35 VAL n 2 36 ILE n 2 37 THR n 2 38 TYR n 2 39 GLY n 2 40 GLU n 2 41 THR n 2 42 GLY n 2 43 GLY n 2 44 ASN n 2 45 SER n 2 46 PRO n 2 47 VAL n 2 48 GLN n 2 49 GLU n 2 50 PHE n 2 51 THR n 2 52 VAL n 2 53 PRO n 2 54 GLY n 2 55 SER n 2 56 LYS n 2 57 SER n 2 58 THR n 2 59 ALA n 2 60 THR n 2 61 ILE n 2 62 SER n 2 63 GLY n 2 64 LEU n 2 65 SER n 2 66 PRO n 2 67 GLY n 2 68 VAL n 2 69 ASP n 2 70 TYR n 2 71 THR n 2 72 ILE n 2 73 THR n 2 74 VAL n 2 75 TYR n 2 76 ALA n 2 77 GLY n 2 78 TYR n 2 79 SER n 2 80 ASP n 2 81 SER n 2 82 TRP n 2 83 ASN n 2 84 TRP n 2 85 PRO n 2 86 TYR n 2 87 SER n 2 88 PRO n 2 89 ILE n 2 90 SER n 2 91 ILE n 2 92 ASN n 2 93 TYR n 2 94 ARG n 2 95 THR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'ABL, ABL1, JTK7' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PHFT2 ? ? 2 1 sample ? ? ? human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PHFT2 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP ABL1_HUMAN 1 ;PSNYITPVNSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSESR FNTLAELVHHHSTVADGLITTLHYPAPKRNKPTVYGVSPNY ; 112 P00519 ? 2 PDB 3UYO 2 ;GSVSSVPTKLEVVAATPTSLLISWDAPAVTVDFYVITYGETGGNSPVQEFTVPGSKSTATISGLSPGVDYTITVYAGYSD SWNWPYSPISINYRT ; ? 3UYO ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3UYO A 3 ? 123 ? P00519 112 ? 232 ? 131 251 2 2 3UYO D 1 ? 95 ? 3UYO 2 ? 96 ? 2 96 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3UYO GLY A 1 ? UNP P00519 ? ? 'expression tag' 129 1 1 3UYO SER A 2 ? UNP P00519 ? ? 'expression tag' 130 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3UYO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_details '0.2M MGCL2, 0.1M BIS-TRIS PH 5.5, 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-03-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI 111 SIDE BOUNCE' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_wavelength 0.97917 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3UYO _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.830 _reflns.number_obs 15737 _reflns.number_all ? _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.11500 _reflns.pdbx_netI_over_sigmaI 24.4000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.000 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3UYO _refine.ls_number_reflns_obs 14920 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 1.83 _refine.ls_percent_reflns_obs 87.4 _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.237 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 796 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 26.17 _refine.aniso_B[1][1] -0.03000 _refine.aniso_B[2][2] -0.13000 _refine.aniso_B[3][3] 0.16000 _refine.aniso_B[1][2] -0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model '1OPK: 154-235, 1FNF: LOOPS OMITTED' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.158 _refine.overall_SU_ML 0.097 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.159 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1614 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 134 _refine_hist.number_atoms_total 1753 _refine_hist.d_res_high 1.83 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.012 0.022 ? 1665 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.337 1.946 ? 2282 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.265 5.000 ? 206 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.859 22.687 ? 67 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 12.971 15.000 ? 240 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14.634 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.093 0.200 ? 257 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.021 ? 1271 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.893 1.500 ? 1037 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.604 2.000 ? 1693 ? 'X-RAY DIFFRACTION' r_scbond_it 2.377 3.000 ? 628 ? 'X-RAY DIFFRACTION' r_scangle_it 3.411 4.500 ? 589 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.83 _refine_ls_shell.d_res_low 1.88 _refine_ls_shell.number_reflns_R_work 1032 _refine_ls_shell.R_factor_R_work 0.2310 _refine_ls_shell.percent_reflns_obs 83.03 _refine_ls_shell.R_factor_R_free 0.2430 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3UYO _struct.title 'Crystal structure of monobody SH13/ABL1 SH2 domain complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3UYO _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/PROTEIN BINDING' _struct_keywords.text ;engineered binding protein, antibody mimic, protein-protein complex, SH2 domain, ATP-binding, phosphoprotein, tyrosine-protein kinase, signaling protein-protein binding complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 11 ? HIS A 16 ? ASN A 139 HIS A 144 5 ? 6 HELX_P HELX_P2 2 SER A 24 ? LEU A 32 ? SER A 152 LEU A 160 1 ? 9 HELX_P HELX_P3 3 THR A 85 ? SER A 94 ? THR A 213 SER A 222 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 VAL 6 B . ? VAL 7 D PRO 7 B ? PRO 8 D 1 2.45 2 GLY 43 B . ? GLY 44 D ASN 44 B ? ASN 45 D 1 -6.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 3 ? D ? 3 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 19 ? PRO A 22 ? TYR A 147 PRO A 150 A 2 SER A 39 ? GLU A 44 ? SER A 167 GLU A 172 A 3 ARG A 52 ? TYR A 58 ? ARG A 180 TYR A 186 A 4 ARG A 61 ? ARG A 66 ? ARG A 189 ARG A 194 B 1 TYR A 19 ? PRO A 22 ? TYR A 147 PRO A 150 B 2 SER A 39 ? GLU A 44 ? SER A 167 GLU A 172 B 3 TYR A 106 ? PRO A 107 ? TYR A 234 PRO A 235 C 1 ASN A 68 ? THR A 69 ? ASN A 196 THR A 197 C 2 LEU A 75 ? TYR A 76 ? LEU A 203 TYR A 204 C 3 ARG A 82 ? PHE A 83 ? ARG A 210 PHE A 211 D 1 GLU B 11 ? ALA B 15 ? GLU D 12 ALA D 16 D 2 LEU B 20 ? SER B 23 ? LEU D 21 SER D 24 D 3 THR B 58 ? ILE B 61 ? THR D 59 ILE D 62 E 1 GLN B 48 ? PRO B 53 ? GLN D 49 PRO D 54 E 2 PHE B 33 ? GLU B 40 ? PHE D 34 GLU D 41 E 3 ASP B 69 ? GLY B 77 ? ASP D 70 GLY D 78 E 4 ILE B 89 ? ARG B 94 ? ILE D 90 ARG D 95 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 20 ? N HIS A 148 O VAL A 42 ? O VAL A 170 A 2 3 N SER A 39 ? N SER A 167 O ARG A 57 ? O ARG A 185 A 3 4 N LEU A 56 ? N LEU A 184 O TYR A 63 ? O TYR A 191 B 1 2 N HIS A 20 ? N HIS A 148 O VAL A 42 ? O VAL A 170 B 2 3 N PHE A 40 ? N PHE A 168 O TYR A 106 ? O TYR A 234 C 1 2 N ASN A 68 ? N ASN A 196 O TYR A 76 ? O TYR A 204 C 2 3 N LEU A 75 ? N LEU A 203 O PHE A 83 ? O PHE A 211 D 1 2 N ALA B 14 ? N ALA D 15 O LEU B 21 ? O LEU D 22 D 2 3 N ILE B 22 ? N ILE D 23 O ALA B 59 ? O ALA D 60 E 1 2 O PHE B 50 ? O PHE D 51 N ILE B 36 ? N ILE D 37 E 2 3 N PHE B 33 ? N PHE D 34 O GLY B 77 ? O GLY D 78 E 3 4 N TYR B 70 ? N TYR D 71 O TYR B 93 ? O TYR D 94 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SO4 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 61 . ? 3_546 ? 2 AC1 6 VAL A 10 ? VAL A 138 . ? 3_546 ? 3 AC1 6 ARG A 25 ? ARG A 153 . ? 1_555 ? 4 AC1 6 ARG A 43 ? ARG A 171 . ? 1_555 ? 5 AC1 6 HIS A 64 ? HIS A 192 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 252 . ? 1_555 ? # _database_PDB_matrix.entry_id 3UYO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3UYO _atom_sites.fract_transf_matrix[1][1] 0.015255 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020333 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016406 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 129 ? ? ? A . n A 1 2 SER 2 130 ? ? ? A . n A 1 3 PRO 3 131 ? ? ? A . n A 1 4 SER 4 132 ? ? ? A . n A 1 5 ASN 5 133 ? ? ? A . n A 1 6 TYR 6 134 134 TYR TYR A . n A 1 7 ILE 7 135 135 ILE ILE A . n A 1 8 THR 8 136 136 THR THR A . n A 1 9 PRO 9 137 137 PRO PRO A . n A 1 10 VAL 10 138 138 VAL VAL A . n A 1 11 ASN 11 139 139 ASN ASN A . n A 1 12 SER 12 140 140 SER SER A . n A 1 13 LEU 13 141 141 LEU LEU A . n A 1 14 GLU 14 142 142 GLU GLU A . n A 1 15 LYS 15 143 143 LYS LYS A . n A 1 16 HIS 16 144 144 HIS HIS A . n A 1 17 SER 17 145 145 SER SER A . n A 1 18 TRP 18 146 146 TRP TRP A . n A 1 19 TYR 19 147 147 TYR TYR A . n A 1 20 HIS 20 148 148 HIS HIS A . n A 1 21 GLY 21 149 149 GLY GLY A . n A 1 22 PRO 22 150 150 PRO PRO A . n A 1 23 VAL 23 151 151 VAL VAL A . n A 1 24 SER 24 152 152 SER SER A . n A 1 25 ARG 25 153 153 ARG ARG A . n A 1 26 ASN 26 154 154 ASN ASN A . n A 1 27 ALA 27 155 155 ALA ALA A . n A 1 28 ALA 28 156 156 ALA ALA A . n A 1 29 GLU 29 157 157 GLU GLU A . n A 1 30 TYR 30 158 158 TYR TYR A . n A 1 31 LEU 31 159 159 LEU LEU A . n A 1 32 LEU 32 160 160 LEU LEU A . n A 1 33 SER 33 161 161 SER SER A . n A 1 34 SER 34 162 162 SER SER A . n A 1 35 GLY 35 163 163 GLY GLY A . n A 1 36 ILE 36 164 164 ILE ILE A . n A 1 37 ASN 37 165 165 ASN ASN A . n A 1 38 GLY 38 166 166 GLY GLY A . n A 1 39 SER 39 167 167 SER SER A . n A 1 40 PHE 40 168 168 PHE PHE A . n A 1 41 LEU 41 169 169 LEU LEU A . n A 1 42 VAL 42 170 170 VAL VAL A . n A 1 43 ARG 43 171 171 ARG ARG A . n A 1 44 GLU 44 172 172 GLU GLU A . n A 1 45 SER 45 173 173 SER SER A . n A 1 46 GLU 46 174 174 GLU GLU A . n A 1 47 SER 47 175 175 SER SER A . n A 1 48 SER 48 176 176 SER SER A . n A 1 49 PRO 49 177 177 PRO PRO A . n A 1 50 GLY 50 178 178 GLY GLY A . n A 1 51 GLN 51 179 179 GLN GLN A . n A 1 52 ARG 52 180 180 ARG ARG A . n A 1 53 SER 53 181 181 SER SER A . n A 1 54 ILE 54 182 182 ILE ILE A . n A 1 55 SER 55 183 183 SER SER A . n A 1 56 LEU 56 184 184 LEU LEU A . n A 1 57 ARG 57 185 185 ARG ARG A . n A 1 58 TYR 58 186 186 TYR TYR A . n A 1 59 GLU 59 187 187 GLU GLU A . n A 1 60 GLY 60 188 188 GLY GLY A . n A 1 61 ARG 61 189 189 ARG ARG A . n A 1 62 VAL 62 190 190 VAL VAL A . n A 1 63 TYR 63 191 191 TYR TYR A . n A 1 64 HIS 64 192 192 HIS HIS A . n A 1 65 TYR 65 193 193 TYR TYR A . n A 1 66 ARG 66 194 194 ARG ARG A . n A 1 67 ILE 67 195 195 ILE ILE A . n A 1 68 ASN 68 196 196 ASN ASN A . n A 1 69 THR 69 197 197 THR THR A . n A 1 70 ALA 70 198 198 ALA ALA A . n A 1 71 SER 71 199 199 SER SER A . n A 1 72 ASP 72 200 200 ASP ASP A . n A 1 73 GLY 73 201 201 GLY GLY A . n A 1 74 LYS 74 202 202 LYS LYS A . n A 1 75 LEU 75 203 203 LEU LEU A . n A 1 76 TYR 76 204 204 TYR TYR A . n A 1 77 VAL 77 205 205 VAL VAL A . n A 1 78 SER 78 206 206 SER SER A . n A 1 79 SER 79 207 207 SER SER A . n A 1 80 GLU 80 208 208 GLU GLU A . n A 1 81 SER 81 209 209 SER SER A . n A 1 82 ARG 82 210 210 ARG ARG A . n A 1 83 PHE 83 211 211 PHE PHE A . n A 1 84 ASN 84 212 212 ASN ASN A . n A 1 85 THR 85 213 213 THR THR A . n A 1 86 LEU 86 214 214 LEU LEU A . n A 1 87 ALA 87 215 215 ALA ALA A . n A 1 88 GLU 88 216 216 GLU GLU A . n A 1 89 LEU 89 217 217 LEU LEU A . n A 1 90 VAL 90 218 218 VAL VAL A . n A 1 91 HIS 91 219 219 HIS HIS A . n A 1 92 HIS 92 220 220 HIS HIS A . n A 1 93 HIS 93 221 221 HIS HIS A . n A 1 94 SER 94 222 222 SER SER A . n A 1 95 THR 95 223 223 THR THR A . n A 1 96 VAL 96 224 224 VAL VAL A . n A 1 97 ALA 97 225 225 ALA ALA A . n A 1 98 ASP 98 226 226 ASP ASP A . n A 1 99 GLY 99 227 227 GLY GLY A . n A 1 100 LEU 100 228 228 LEU LEU A . n A 1 101 ILE 101 229 229 ILE ILE A . n A 1 102 THR 102 230 230 THR THR A . n A 1 103 THR 103 231 231 THR THR A . n A 1 104 LEU 104 232 232 LEU LEU A . n A 1 105 HIS 105 233 233 HIS HIS A . n A 1 106 TYR 106 234 234 TYR TYR A . n A 1 107 PRO 107 235 235 PRO PRO A . n A 1 108 ALA 108 236 236 ALA ALA A . n A 1 109 PRO 109 237 237 PRO PRO A . n A 1 110 LYS 110 238 238 LYS LYS A . n A 1 111 ARG 111 239 239 ARG ARG A . n A 1 112 ASN 112 240 240 ASN ASN A . n A 1 113 LYS 113 241 241 LYS LYS A . n A 1 114 PRO 114 242 242 PRO PRO A . n A 1 115 THR 115 243 243 THR THR A . n A 1 116 VAL 116 244 244 VAL VAL A . n A 1 117 TYR 117 245 245 TYR TYR A . n A 1 118 GLY 118 246 246 GLY GLY A . n A 1 119 VAL 119 247 247 VAL VAL A . n A 1 120 SER 120 248 ? ? ? A . n A 1 121 PRO 121 249 ? ? ? A . n A 1 122 ASN 122 250 ? ? ? A . n A 1 123 TYR 123 251 ? ? ? A . n B 2 1 GLY 1 2 ? ? ? D . n B 2 2 SER 2 3 3 SER SER D . n B 2 3 VAL 3 4 4 VAL VAL D . n B 2 4 SER 4 5 5 SER SER D . n B 2 5 SER 5 6 6 SER SER D . n B 2 6 VAL 6 7 7 VAL VAL D . n B 2 7 PRO 7 8 8 PRO PRO D . n B 2 8 THR 8 9 9 THR THR D . n B 2 9 LYS 9 10 10 LYS LYS D . n B 2 10 LEU 10 11 11 LEU LEU D . n B 2 11 GLU 11 12 12 GLU GLU D . n B 2 12 VAL 12 13 13 VAL VAL D . n B 2 13 VAL 13 14 14 VAL VAL D . n B 2 14 ALA 14 15 15 ALA ALA D . n B 2 15 ALA 15 16 16 ALA ALA D . n B 2 16 THR 16 17 17 THR THR D . n B 2 17 PRO 17 18 18 PRO PRO D . n B 2 18 THR 18 19 19 THR THR D . n B 2 19 SER 19 20 20 SER SER D . n B 2 20 LEU 20 21 21 LEU LEU D . n B 2 21 LEU 21 22 22 LEU LEU D . n B 2 22 ILE 22 23 23 ILE ILE D . n B 2 23 SER 23 24 24 SER SER D . n B 2 24 TRP 24 25 25 TRP TRP D . n B 2 25 ASP 25 26 26 ASP ASP D . n B 2 26 ALA 26 27 27 ALA ALA D . n B 2 27 PRO 27 28 28 PRO PRO D . n B 2 28 ALA 28 29 29 ALA ALA D . n B 2 29 VAL 29 30 30 VAL VAL D . n B 2 30 THR 30 31 31 THR THR D . n B 2 31 VAL 31 32 32 VAL VAL D . n B 2 32 ASP 32 33 33 ASP ASP D . n B 2 33 PHE 33 34 34 PHE PHE D . n B 2 34 TYR 34 35 35 TYR TYR D . n B 2 35 VAL 35 36 36 VAL VAL D . n B 2 36 ILE 36 37 37 ILE ILE D . n B 2 37 THR 37 38 38 THR THR D . n B 2 38 TYR 38 39 39 TYR TYR D . n B 2 39 GLY 39 40 40 GLY GLY D . n B 2 40 GLU 40 41 41 GLU GLU D . n B 2 41 THR 41 42 42 THR THR D . n B 2 42 GLY 42 43 43 GLY GLY D . n B 2 43 GLY 43 44 44 GLY GLY D . n B 2 44 ASN 44 45 45 ASN ASN D . n B 2 45 SER 45 46 46 SER SER D . n B 2 46 PRO 46 47 47 PRO PRO D . n B 2 47 VAL 47 48 48 VAL VAL D . n B 2 48 GLN 48 49 49 GLN GLN D . n B 2 49 GLU 49 50 50 GLU GLU D . n B 2 50 PHE 50 51 51 PHE PHE D . n B 2 51 THR 51 52 52 THR THR D . n B 2 52 VAL 52 53 53 VAL VAL D . n B 2 53 PRO 53 54 54 PRO PRO D . n B 2 54 GLY 54 55 55 GLY GLY D . n B 2 55 SER 55 56 56 SER SER D . n B 2 56 LYS 56 57 57 LYS LYS D . n B 2 57 SER 57 58 58 SER SER D . n B 2 58 THR 58 59 59 THR THR D . n B 2 59 ALA 59 60 60 ALA ALA D . n B 2 60 THR 60 61 61 THR THR D . n B 2 61 ILE 61 62 62 ILE ILE D . n B 2 62 SER 62 63 63 SER SER D . n B 2 63 GLY 63 64 64 GLY GLY D . n B 2 64 LEU 64 65 65 LEU LEU D . n B 2 65 SER 65 66 66 SER SER D . n B 2 66 PRO 66 67 67 PRO PRO D . n B 2 67 GLY 67 68 68 GLY GLY D . n B 2 68 VAL 68 69 69 VAL VAL D . n B 2 69 ASP 69 70 70 ASP ASP D . n B 2 70 TYR 70 71 71 TYR TYR D . n B 2 71 THR 71 72 72 THR THR D . n B 2 72 ILE 72 73 73 ILE ILE D . n B 2 73 THR 73 74 74 THR THR D . n B 2 74 VAL 74 75 75 VAL VAL D . n B 2 75 TYR 75 76 76 TYR TYR D . n B 2 76 ALA 76 77 77 ALA ALA D . n B 2 77 GLY 77 78 78 GLY GLY D . n B 2 78 TYR 78 79 79 TYR TYR D . n B 2 79 SER 79 80 80 SER SER D . n B 2 80 ASP 80 81 81 ASP ASP D . n B 2 81 SER 81 82 82 SER SER D . n B 2 82 TRP 82 83 83 TRP TRP D . n B 2 83 ASN 83 84 84 ASN ASN D . n B 2 84 TRP 84 85 85 TRP TRP D . n B 2 85 PRO 85 86 86 PRO PRO D . n B 2 86 TYR 86 87 87 TYR TYR D . n B 2 87 SER 87 88 88 SER SER D . n B 2 88 PRO 88 89 89 PRO PRO D . n B 2 89 ILE 89 90 90 ILE ILE D . n B 2 90 SER 90 91 91 SER SER D . n B 2 91 ILE 91 92 92 ILE ILE D . n B 2 92 ASN 92 93 93 ASN ASN D . n B 2 93 TYR 93 94 94 TYR TYR D . n B 2 94 ARG 94 95 95 ARG ARG D . n B 2 95 THR 95 96 96 THR THR D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 1 1 SO4 SO4 A . D 4 HOH 1 3 3 HOH HOH A . D 4 HOH 2 5 5 HOH HOH A . D 4 HOH 3 6 6 HOH HOH A . D 4 HOH 4 7 7 HOH HOH A . D 4 HOH 5 9 9 HOH HOH A . D 4 HOH 6 10 10 HOH HOH A . D 4 HOH 7 11 11 HOH HOH A . D 4 HOH 8 12 12 HOH HOH A . D 4 HOH 9 13 13 HOH HOH A . D 4 HOH 10 14 14 HOH HOH A . D 4 HOH 11 15 15 HOH HOH A . D 4 HOH 12 17 17 HOH HOH A . D 4 HOH 13 18 18 HOH HOH A . D 4 HOH 14 21 21 HOH HOH A . D 4 HOH 15 25 25 HOH HOH A . D 4 HOH 16 26 26 HOH HOH A . D 4 HOH 17 28 28 HOH HOH A . D 4 HOH 18 29 29 HOH HOH A . D 4 HOH 19 30 30 HOH HOH A . D 4 HOH 20 31 31 HOH HOH A . D 4 HOH 21 33 33 HOH HOH A . D 4 HOH 22 34 34 HOH HOH A . D 4 HOH 23 37 37 HOH HOH A . D 4 HOH 24 39 39 HOH HOH A . D 4 HOH 25 41 41 HOH HOH A . D 4 HOH 26 42 42 HOH HOH A . D 4 HOH 27 44 44 HOH HOH A . D 4 HOH 28 45 45 HOH HOH A . D 4 HOH 29 46 46 HOH HOH A . D 4 HOH 30 47 47 HOH HOH A . D 4 HOH 31 49 49 HOH HOH A . D 4 HOH 32 51 51 HOH HOH A . D 4 HOH 33 53 53 HOH HOH A . D 4 HOH 34 54 54 HOH HOH A . D 4 HOH 35 56 56 HOH HOH A . D 4 HOH 36 57 57 HOH HOH A . D 4 HOH 37 59 59 HOH HOH A . D 4 HOH 38 60 60 HOH HOH A . D 4 HOH 39 61 61 HOH HOH A . D 4 HOH 40 62 62 HOH HOH A . D 4 HOH 41 65 65 HOH HOH A . D 4 HOH 42 66 66 HOH HOH A . D 4 HOH 43 67 67 HOH HOH A . D 4 HOH 44 68 68 HOH HOH A . D 4 HOH 45 69 69 HOH HOH A . D 4 HOH 46 70 70 HOH HOH A . D 4 HOH 47 72 72 HOH HOH A . D 4 HOH 48 73 73 HOH HOH A . D 4 HOH 49 74 74 HOH HOH A . D 4 HOH 50 75 75 HOH HOH A . D 4 HOH 51 76 76 HOH HOH A . D 4 HOH 52 77 77 HOH HOH A . D 4 HOH 53 78 78 HOH HOH A . D 4 HOH 54 80 80 HOH HOH A . D 4 HOH 55 81 81 HOH HOH A . D 4 HOH 56 82 82 HOH HOH A . D 4 HOH 57 84 84 HOH HOH A . D 4 HOH 58 87 87 HOH HOH A . D 4 HOH 59 89 89 HOH HOH A . D 4 HOH 60 91 91 HOH HOH A . D 4 HOH 61 92 92 HOH HOH A . D 4 HOH 62 95 95 HOH HOH A . D 4 HOH 63 96 96 HOH HOH A . D 4 HOH 64 97 97 HOH HOH A . D 4 HOH 65 98 98 HOH HOH A . D 4 HOH 66 101 101 HOH HOH A . D 4 HOH 67 102 102 HOH HOH A . D 4 HOH 68 103 103 HOH HOH A . D 4 HOH 69 104 104 HOH HOH A . D 4 HOH 70 106 106 HOH HOH A . D 4 HOH 71 107 107 HOH HOH A . D 4 HOH 72 108 108 HOH HOH A . D 4 HOH 73 112 112 HOH HOH A . D 4 HOH 74 114 114 HOH HOH A . D 4 HOH 75 115 115 HOH HOH A . D 4 HOH 76 116 116 HOH HOH A . D 4 HOH 77 118 118 HOH HOH A . D 4 HOH 78 120 120 HOH HOH A . D 4 HOH 79 123 123 HOH HOH A . D 4 HOH 80 125 125 HOH HOH A . D 4 HOH 81 126 126 HOH HOH A . D 4 HOH 82 127 127 HOH HOH A . D 4 HOH 83 252 252 HOH HOH A . D 4 HOH 84 253 253 HOH HOH A . D 4 HOH 85 254 254 HOH HOH A . E 4 HOH 1 1 1 HOH HOH D . E 4 HOH 2 97 97 HOH HOH D . E 4 HOH 3 98 98 HOH HOH D . E 4 HOH 4 99 99 HOH HOH D . E 4 HOH 5 100 100 HOH HOH D . E 4 HOH 6 101 101 HOH HOH D . E 4 HOH 7 102 102 HOH HOH D . E 4 HOH 8 103 103 HOH HOH D . E 4 HOH 9 104 104 HOH HOH D . E 4 HOH 10 105 105 HOH HOH D . E 4 HOH 11 106 106 HOH HOH D . E 4 HOH 12 107 107 HOH HOH D . E 4 HOH 13 108 108 HOH HOH D . E 4 HOH 14 109 109 HOH HOH D . E 4 HOH 15 110 110 HOH HOH D . E 4 HOH 16 111 111 HOH HOH D . E 4 HOH 17 112 112 HOH HOH D . E 4 HOH 18 113 113 HOH HOH D . E 4 HOH 19 114 114 HOH HOH D . E 4 HOH 20 115 115 HOH HOH D . E 4 HOH 21 116 116 HOH HOH D . E 4 HOH 22 117 117 HOH HOH D . E 4 HOH 23 118 118 HOH HOH D . E 4 HOH 24 119 119 HOH HOH D . E 4 HOH 25 120 120 HOH HOH D . E 4 HOH 26 121 121 HOH HOH D . E 4 HOH 27 122 122 HOH HOH D . E 4 HOH 28 123 123 HOH HOH D . E 4 HOH 29 124 124 HOH HOH D . E 4 HOH 30 125 125 HOH HOH D . E 4 HOH 31 126 126 HOH HOH D . E 4 HOH 32 127 127 HOH HOH D . E 4 HOH 33 128 128 HOH HOH D . E 4 HOH 34 129 129 HOH HOH D . E 4 HOH 35 130 130 HOH HOH D . E 4 HOH 36 131 131 HOH HOH D . E 4 HOH 37 132 132 HOH HOH D . E 4 HOH 38 133 133 HOH HOH D . E 4 HOH 39 134 134 HOH HOH D . E 4 HOH 40 135 135 HOH HOH D . E 4 HOH 41 136 136 HOH HOH D . E 4 HOH 42 137 137 HOH HOH D . E 4 HOH 43 138 138 HOH HOH D . E 4 HOH 44 139 139 HOH HOH D . E 4 HOH 45 140 140 HOH HOH D . E 4 HOH 46 141 141 HOH HOH D . E 4 HOH 47 142 142 HOH HOH D . E 4 HOH 48 143 143 HOH HOH D . E 4 HOH 49 144 144 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1950 ? 1 MORE -23 ? 1 'SSA (A^2)' 10990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-12-28 2 'Structure model' 1 1 2012-04-18 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER phasing . ? 1 REFMAC refinement 5.5.0109 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SO4 _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 252 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.01 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 115 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 137 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_556 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 177 ? ? -58.51 172.33 2 1 LYS D 10 ? ? -112.44 69.77 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 129 ? A GLY 1 2 1 Y 1 A SER 130 ? A SER 2 3 1 Y 1 A PRO 131 ? A PRO 3 4 1 Y 1 A SER 132 ? A SER 4 5 1 Y 1 A ASN 133 ? A ASN 5 6 1 Y 1 A SER 248 ? A SER 120 7 1 Y 1 A PRO 249 ? A PRO 121 8 1 Y 1 A ASN 250 ? A ASN 122 9 1 Y 1 A TYR 251 ? A TYR 123 10 1 Y 1 D GLY 2 ? B GLY 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 PHE N N N N 216 PHE CA C N S 217 PHE C C N N 218 PHE O O N N 219 PHE CB C N N 220 PHE CG C Y N 221 PHE CD1 C Y N 222 PHE CD2 C Y N 223 PHE CE1 C Y N 224 PHE CE2 C Y N 225 PHE CZ C Y N 226 PHE OXT O N N 227 PHE H H N N 228 PHE H2 H N N 229 PHE HA H N N 230 PHE HB2 H N N 231 PHE HB3 H N N 232 PHE HD1 H N N 233 PHE HD2 H N N 234 PHE HE1 H N N 235 PHE HE2 H N N 236 PHE HZ H N N 237 PHE HXT H N N 238 PRO N N N N 239 PRO CA C N S 240 PRO C C N N 241 PRO O O N N 242 PRO CB C N N 243 PRO CG C N N 244 PRO CD C N N 245 PRO OXT O N N 246 PRO H H N N 247 PRO HA H N N 248 PRO HB2 H N N 249 PRO HB3 H N N 250 PRO HG2 H N N 251 PRO HG3 H N N 252 PRO HD2 H N N 253 PRO HD3 H N N 254 PRO HXT H N N 255 SER N N N N 256 SER CA C N S 257 SER C C N N 258 SER O O N N 259 SER CB C N N 260 SER OG O N N 261 SER OXT O N N 262 SER H H N N 263 SER H2 H N N 264 SER HA H N N 265 SER HB2 H N N 266 SER HB3 H N N 267 SER HG H N N 268 SER HXT H N N 269 SO4 S S N N 270 SO4 O1 O N N 271 SO4 O2 O N N 272 SO4 O3 O N N 273 SO4 O4 O N N 274 THR N N N N 275 THR CA C N S 276 THR C C N N 277 THR O O N N 278 THR CB C N R 279 THR OG1 O N N 280 THR CG2 C N N 281 THR OXT O N N 282 THR H H N N 283 THR H2 H N N 284 THR HA H N N 285 THR HB H N N 286 THR HG1 H N N 287 THR HG21 H N N 288 THR HG22 H N N 289 THR HG23 H N N 290 THR HXT H N N 291 TRP N N N N 292 TRP CA C N S 293 TRP C C N N 294 TRP O O N N 295 TRP CB C N N 296 TRP CG C Y N 297 TRP CD1 C Y N 298 TRP CD2 C Y N 299 TRP NE1 N Y N 300 TRP CE2 C Y N 301 TRP CE3 C Y N 302 TRP CZ2 C Y N 303 TRP CZ3 C Y N 304 TRP CH2 C Y N 305 TRP OXT O N N 306 TRP H H N N 307 TRP H2 H N N 308 TRP HA H N N 309 TRP HB2 H N N 310 TRP HB3 H N N 311 TRP HD1 H N N 312 TRP HE1 H N N 313 TRP HE3 H N N 314 TRP HZ2 H N N 315 TRP HZ3 H N N 316 TRP HH2 H N N 317 TRP HXT H N N 318 TYR N N N N 319 TYR CA C N S 320 TYR C C N N 321 TYR O O N N 322 TYR CB C N N 323 TYR CG C Y N 324 TYR CD1 C Y N 325 TYR CD2 C Y N 326 TYR CE1 C Y N 327 TYR CE2 C Y N 328 TYR CZ C Y N 329 TYR OH O N N 330 TYR OXT O N N 331 TYR H H N N 332 TYR H2 H N N 333 TYR HA H N N 334 TYR HB2 H N N 335 TYR HB3 H N N 336 TYR HD1 H N N 337 TYR HD2 H N N 338 TYR HE1 H N N 339 TYR HE2 H N N 340 TYR HH H N N 341 TYR HXT H N N 342 VAL N N N N 343 VAL CA C N S 344 VAL C C N N 345 VAL O O N N 346 VAL CB C N N 347 VAL CG1 C N N 348 VAL CG2 C N N 349 VAL OXT O N N 350 VAL H H N N 351 VAL H2 H N N 352 VAL HA H N N 353 VAL HB H N N 354 VAL HG11 H N N 355 VAL HG12 H N N 356 VAL HG13 H N N 357 VAL HG21 H N N 358 VAL HG22 H N N 359 VAL HG23 H N N 360 VAL HXT H N N 361 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 PHE N CA sing N N 205 PHE N H sing N N 206 PHE N H2 sing N N 207 PHE CA C sing N N 208 PHE CA CB sing N N 209 PHE CA HA sing N N 210 PHE C O doub N N 211 PHE C OXT sing N N 212 PHE CB CG sing N N 213 PHE CB HB2 sing N N 214 PHE CB HB3 sing N N 215 PHE CG CD1 doub Y N 216 PHE CG CD2 sing Y N 217 PHE CD1 CE1 sing Y N 218 PHE CD1 HD1 sing N N 219 PHE CD2 CE2 doub Y N 220 PHE CD2 HD2 sing N N 221 PHE CE1 CZ doub Y N 222 PHE CE1 HE1 sing N N 223 PHE CE2 CZ sing Y N 224 PHE CE2 HE2 sing N N 225 PHE CZ HZ sing N N 226 PHE OXT HXT sing N N 227 PRO N CA sing N N 228 PRO N CD sing N N 229 PRO N H sing N N 230 PRO CA C sing N N 231 PRO CA CB sing N N 232 PRO CA HA sing N N 233 PRO C O doub N N 234 PRO C OXT sing N N 235 PRO CB CG sing N N 236 PRO CB HB2 sing N N 237 PRO CB HB3 sing N N 238 PRO CG CD sing N N 239 PRO CG HG2 sing N N 240 PRO CG HG3 sing N N 241 PRO CD HD2 sing N N 242 PRO CD HD3 sing N N 243 PRO OXT HXT sing N N 244 SER N CA sing N N 245 SER N H sing N N 246 SER N H2 sing N N 247 SER CA C sing N N 248 SER CA CB sing N N 249 SER CA HA sing N N 250 SER C O doub N N 251 SER C OXT sing N N 252 SER CB OG sing N N 253 SER CB HB2 sing N N 254 SER CB HB3 sing N N 255 SER OG HG sing N N 256 SER OXT HXT sing N N 257 SO4 S O1 doub N N 258 SO4 S O2 doub N N 259 SO4 S O3 sing N N 260 SO4 S O4 sing N N 261 THR N CA sing N N 262 THR N H sing N N 263 THR N H2 sing N N 264 THR CA C sing N N 265 THR CA CB sing N N 266 THR CA HA sing N N 267 THR C O doub N N 268 THR C OXT sing N N 269 THR CB OG1 sing N N 270 THR CB CG2 sing N N 271 THR CB HB sing N N 272 THR OG1 HG1 sing N N 273 THR CG2 HG21 sing N N 274 THR CG2 HG22 sing N N 275 THR CG2 HG23 sing N N 276 THR OXT HXT sing N N 277 TRP N CA sing N N 278 TRP N H sing N N 279 TRP N H2 sing N N 280 TRP CA C sing N N 281 TRP CA CB sing N N 282 TRP CA HA sing N N 283 TRP C O doub N N 284 TRP C OXT sing N N 285 TRP CB CG sing N N 286 TRP CB HB2 sing N N 287 TRP CB HB3 sing N N 288 TRP CG CD1 doub Y N 289 TRP CG CD2 sing Y N 290 TRP CD1 NE1 sing Y N 291 TRP CD1 HD1 sing N N 292 TRP CD2 CE2 doub Y N 293 TRP CD2 CE3 sing Y N 294 TRP NE1 CE2 sing Y N 295 TRP NE1 HE1 sing N N 296 TRP CE2 CZ2 sing Y N 297 TRP CE3 CZ3 doub Y N 298 TRP CE3 HE3 sing N N 299 TRP CZ2 CH2 doub Y N 300 TRP CZ2 HZ2 sing N N 301 TRP CZ3 CH2 sing Y N 302 TRP CZ3 HZ3 sing N N 303 TRP CH2 HH2 sing N N 304 TRP OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1OPK '1OPK: 154-235, 1FNF: LOOPS OMITTED' 2 ? 'experimental model' PDB 1FNF '1OPK: 154-235, 1FNF: LOOPS OMITTED' #