HEADER ANTIFREEZE PROTEIN 06-DEC-11 3UYU TITLE STRUCTURAL BASIS FOR THE ANTIFREEZE ACTIVITY OF AN ICE-BINDING PROTEIN TITLE 2 (LEIBP) FROM ARCTIC YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIFREEZE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-261; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEUCOSPORIDIUM; SOURCE 3 ORGANISM_TAXID: 662878; SOURCE 4 STRAIN: AY30; SOURCE 5 GENE: AFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIGHT-HANDED BETA-HELIX FOLD, ICE BINDING PROTEIN, ANTIFREEZE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.LEE,A.K.PARK,H.DO,K.S.PARK,S.H.MOH,Y.M.CHI,H.J.KIM REVDAT 1 15-FEB-12 3UYU 0 JRNL AUTH J.H.LEE,A.K.PARK,H.DO,K.S.PARK,S.H.MOH,Y.M.CHI,H.J.KIM JRNL TITL STRUCTURAL BASIS FOR THE ANTIFREEZE ACTIVITY OF AN JRNL TITL 2 ICE-BINDING PROTEIN FROM AN ARCTIC YEAST. JRNL REF J.BIOL.CHEM. 2012 JRNL REFN ESSN 1083-351X JRNL PMID 22303017 JRNL DOI 10.1074/JBC.M111.331835 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 67692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4926 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 458 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.461 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3416 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4671 ; 2.257 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 6.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;33.150 ;25.606 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 474 ;14.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.981 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 558 ; 0.308 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2602 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2275 ; 1.270 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3638 ; 2.071 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1141 ; 3.701 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1033 ; 5.296 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3UYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-11. REMARK 100 THE RCSB ID CODE IS RCSB069380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98227 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 LIQUID NITROGEN COOLING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71520 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, PH 4.5, 1.2M REMARK 280 AMMONIUM SULFATE, 0.2M NACL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.30500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.79000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.95750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.79000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.65250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.79000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.79000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.95750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.79000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.79000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.65250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.30500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 74 REMARK 465 LYS A 253 REMARK 465 ARG A 254 REMARK 465 SER A 255 REMARK 465 ASN A 256 REMARK 465 ALA A 257 REMARK 465 ARG A 258 REMARK 465 GLN A 259 REMARK 465 TRP A 260 REMARK 465 LEU A 261 REMARK 465 ASP B 72 REMARK 465 SER B 73 REMARK 465 LYS B 253 REMARK 465 ARG B 254 REMARK 465 SER B 255 REMARK 465 ASN B 256 REMARK 465 ALA B 257 REMARK 465 ARG B 258 REMARK 465 GLN B 259 REMARK 465 TRP B 260 REMARK 465 LEU B 261 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 73 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 232 O HOH B 573 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 430 O HOH B 571 6545 2.13 REMARK 500 O HOH A 561 O HOH B 581 6545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 32 CB SER B 32 OG -0.087 REMARK 500 ASP B 119 CB ASP B 119 CG -0.144 REMARK 500 LYS B 201 CB LYS B 201 CG -0.264 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 45 CG1 - CB - CG2 ANGL. DEV. = 14.2 DEGREES REMARK 500 LEU A 139 CB - CG - CD2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP A 159 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 LEU A 170 CB - CG - CD2 ANGL. DEV. = 14.8 DEGREES REMARK 500 LEU A 217 CB - CG - CD2 ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 226 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 VAL B 45 CG1 - CB - CG2 ANGL. DEV. = 11.9 DEGREES REMARK 500 MSE B 86 CG - SE - CE ANGL. DEV. = -17.6 DEGREES REMARK 500 ASP B 119 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 131 CG - CD - NE ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP B 174 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LYS B 201 CB - CG - CD ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 72 -157.38 -86.96 REMARK 500 ASP A 119 80.08 41.25 REMARK 500 ARG A 213 -140.15 -129.08 REMARK 500 THR A 231 -109.77 -132.00 REMARK 500 ASP B 119 71.93 50.42 REMARK 500 ASP B 195 -168.41 -118.41 REMARK 500 ARG B 213 -145.39 -128.40 REMARK 500 THR B 231 -106.47 -128.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 119 16.0 L L OUTSIDE RANGE REMARK 500 THR A 219 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UYV RELATED DB: PDB DBREF 3UYU A 21 261 UNP C7F6X3 C7F6X3_9BASI 21 261 DBREF 3UYU B 21 261 UNP C7F6X3 C7F6X3_9BASI 21 261 SEQADV 3UYU MSE A 86 UNP C7F6X3 LEU 86 ENGINEERED MUTATION SEQADV 3UYU MSE A 172 UNP C7F6X3 LEU 172 ENGINEERED MUTATION SEQADV 3UYU MSE B 86 UNP C7F6X3 LEU 86 ENGINEERED MUTATION SEQADV 3UYU MSE B 172 UNP C7F6X3 LEU 172 ENGINEERED MUTATION SEQRES 1 A 241 GLN ARG ASP LEU SER VAL GLU LEU GLY VAL ALA SER ASN SEQRES 2 A 241 PHE ALA ILE LEU ALA LYS ALA GLY ILE SER SER VAL PRO SEQRES 3 A 241 ASP SER ALA ILE LEU GLY ASP ILE GLY VAL SER PRO ALA SEQRES 4 A 241 ALA ALA THR TYR ILE THR GLY PHE GLY LEU THR GLN ASP SEQRES 5 A 241 SER SER THR THR TYR ALA THR SER PRO GLN VAL THR GLY SEQRES 6 A 241 MSE ILE TYR ALA ALA ASP TYR SER THR PRO THR PRO ASN SEQRES 7 A 241 TYR LEU ALA ALA ALA VAL ALA ASN ALA GLU THR ALA TYR SEQRES 8 A 241 ASN GLN ALA ALA GLY PHE VAL ASP PRO ASP PHE LEU GLU SEQRES 9 A 241 LEU GLY ALA GLY GLU LEU ARG ASP GLN THR LEU VAL PRO SEQRES 10 A 241 GLY LEU TYR LYS TRP THR SER SER VAL SER VAL PRO THR SEQRES 11 A 241 ASP LEU THR PHE GLU GLY ASN GLY ASP ALA THR TRP VAL SEQRES 12 A 241 PHE GLN ILE ALA GLY GLY LEU SER MSE ALA ASP GLY VAL SEQRES 13 A 241 ALA PHE THR LEU ALA GLY GLY ALA ASN SER THR ASN ILE SEQRES 14 A 241 ALA PHE GLN VAL GLY ASP ASP VAL THR VAL GLY LYS GLY SEQRES 15 A 241 ALA HIS PHE GLU GLY VAL LEU LEU ALA LYS ARG PHE VAL SEQRES 16 A 241 THR LEU GLN THR GLY SER SER LEU ASN GLY ARG VAL LEU SEQRES 17 A 241 SER GLN THR GLU VAL ALA LEU GLN LYS ALA THR VAL ASN SEQRES 18 A 241 SER PRO PHE VAL PRO ALA PRO GLU VAL VAL GLN LYS ARG SEQRES 19 A 241 SER ASN ALA ARG GLN TRP LEU SEQRES 1 B 241 GLN ARG ASP LEU SER VAL GLU LEU GLY VAL ALA SER ASN SEQRES 2 B 241 PHE ALA ILE LEU ALA LYS ALA GLY ILE SER SER VAL PRO SEQRES 3 B 241 ASP SER ALA ILE LEU GLY ASP ILE GLY VAL SER PRO ALA SEQRES 4 B 241 ALA ALA THR TYR ILE THR GLY PHE GLY LEU THR GLN ASP SEQRES 5 B 241 SER SER THR THR TYR ALA THR SER PRO GLN VAL THR GLY SEQRES 6 B 241 MSE ILE TYR ALA ALA ASP TYR SER THR PRO THR PRO ASN SEQRES 7 B 241 TYR LEU ALA ALA ALA VAL ALA ASN ALA GLU THR ALA TYR SEQRES 8 B 241 ASN GLN ALA ALA GLY PHE VAL ASP PRO ASP PHE LEU GLU SEQRES 9 B 241 LEU GLY ALA GLY GLU LEU ARG ASP GLN THR LEU VAL PRO SEQRES 10 B 241 GLY LEU TYR LYS TRP THR SER SER VAL SER VAL PRO THR SEQRES 11 B 241 ASP LEU THR PHE GLU GLY ASN GLY ASP ALA THR TRP VAL SEQRES 12 B 241 PHE GLN ILE ALA GLY GLY LEU SER MSE ALA ASP GLY VAL SEQRES 13 B 241 ALA PHE THR LEU ALA GLY GLY ALA ASN SER THR ASN ILE SEQRES 14 B 241 ALA PHE GLN VAL GLY ASP ASP VAL THR VAL GLY LYS GLY SEQRES 15 B 241 ALA HIS PHE GLU GLY VAL LEU LEU ALA LYS ARG PHE VAL SEQRES 16 B 241 THR LEU GLN THR GLY SER SER LEU ASN GLY ARG VAL LEU SEQRES 17 B 241 SER GLN THR GLU VAL ALA LEU GLN LYS ALA THR VAL ASN SEQRES 18 B 241 SER PRO PHE VAL PRO ALA PRO GLU VAL VAL GLN LYS ARG SEQRES 19 B 241 SER ASN ALA ARG GLN TRP LEU MODRES 3UYU MSE A 86 MET SELENOMETHIONINE MODRES 3UYU MSE A 172 MET SELENOMETHIONINE MODRES 3UYU MSE B 86 MET SELENOMETHIONINE MODRES 3UYU MSE B 172 MET SELENOMETHIONINE HET MSE A 86 8 HET MSE A 172 8 HET MSE B 86 8 HET MSE B 172 8 HET GOL A 301 6 HET GOL B 301 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *458(H2 O) HELIX 1 1 LEU A 28 PHE A 34 5 7 HELIX 2 2 ALA A 60 THR A 62 5 3 HELIX 3 3 PRO A 95 PHE A 117 1 23 HELIX 4 4 LEU A 125 GLU A 129 5 5 HELIX 5 5 ASN A 185 THR A 187 5 3 HELIX 6 6 LEU B 28 SER B 32 5 5 HELIX 7 7 ALA B 60 THR B 62 5 3 HELIX 8 8 PRO B 95 PHE B 117 1 23 HELIX 9 9 LEU B 125 GLU B 129 5 5 HELIX 10 10 ASN B 185 THR B 187 5 3 SHEET 1 A 7 VAL A 83 THR A 84 0 SHEET 2 A 7 ALA A 49 LEU A 51 1 N ILE A 50 O THR A 84 SHEET 3 A 7 THR A 239 ASN A 241 1 O VAL A 240 N LEU A 51 SHEET 4 A 7 SER A 222 SER A 229 1 N LEU A 223 O ASN A 241 SHEET 5 A 7 ILE A 36 ALA A 38 1 N LEU A 37 O SER A 229 SHEET 6 A 7 ILE A 54 VAL A 56 1 O GLY A 55 N ALA A 38 SHEET 7 A 7 ILE A 87 ALA A 89 1 O TYR A 88 N ILE A 54 SHEET 1 B 9 VAL A 83 THR A 84 0 SHEET 2 B 9 ALA A 49 LEU A 51 1 N ILE A 50 O THR A 84 SHEET 3 B 9 THR A 239 ASN A 241 1 O VAL A 240 N LEU A 51 SHEET 4 B 9 SER A 222 SER A 229 1 N LEU A 223 O ASN A 241 SHEET 5 B 9 HIS A 204 ALA A 211 1 N LEU A 209 O ARG A 226 SHEET 6 B 9 ILE A 189 VAL A 193 1 N PHE A 191 O LEU A 210 SHEET 7 B 9 TRP A 162 ILE A 166 1 N PHE A 164 O GLN A 192 SHEET 8 B 9 GLY A 138 TRP A 142 1 N TYR A 140 O GLN A 165 SHEET 9 B 9 PHE A 122 LEU A 123 1 N PHE A 122 O LYS A 141 SHEET 1 C 7 ILE A 64 THR A 65 0 SHEET 2 C 7 GLY A 41 VAL A 45 1 N ILE A 42 O THR A 65 SHEET 3 C 7 GLU A 232 GLN A 236 1 O LEU A 235 N SER A 43 SHEET 4 C 7 VAL A 215 LEU A 217 1 N VAL A 215 O ALA A 234 SHEET 5 C 7 VAL A 197 VAL A 199 1 N VAL A 199 O THR A 216 SHEET 6 C 7 LEU A 170 MSE A 172 1 N LEU A 170 O THR A 198 SHEET 7 C 7 VAL A 146 VAL A 148 1 N VAL A 146 O SER A 171 SHEET 1 D 2 THR A 70 GLN A 71 0 SHEET 2 D 2 ALA A 78 THR A 79 -1 O THR A 79 N THR A 70 SHEET 1 E 3 GLN A 133 LEU A 135 0 SHEET 2 E 3 LEU A 152 GLU A 155 1 O THR A 153 N LEU A 135 SHEET 3 E 3 PHE A 178 ALA A 181 1 O THR A 179 N LEU A 152 SHEET 1 F 7 VAL B 83 THR B 84 0 SHEET 2 F 7 ALA B 49 LEU B 51 1 N ILE B 50 O THR B 84 SHEET 3 F 7 THR B 239 ASN B 241 1 O VAL B 240 N LEU B 51 SHEET 4 F 7 SER B 222 SER B 229 1 N LEU B 223 O ASN B 241 SHEET 5 F 7 PHE B 34 ALA B 38 1 N LEU B 37 O SER B 229 SHEET 6 F 7 ASP B 53 VAL B 56 1 O ASP B 53 N ALA B 35 SHEET 7 F 7 ILE B 87 ALA B 89 1 O TYR B 88 N ILE B 54 SHEET 1 G 9 VAL B 83 THR B 84 0 SHEET 2 G 9 ALA B 49 LEU B 51 1 N ILE B 50 O THR B 84 SHEET 3 G 9 THR B 239 ASN B 241 1 O VAL B 240 N LEU B 51 SHEET 4 G 9 SER B 222 SER B 229 1 N LEU B 223 O ASN B 241 SHEET 5 G 9 HIS B 204 ALA B 211 1 N LEU B 209 O LEU B 228 SHEET 6 G 9 ILE B 189 VAL B 193 1 N PHE B 191 O LEU B 210 SHEET 7 G 9 TRP B 162 ILE B 166 1 N PHE B 164 O GLN B 192 SHEET 8 G 9 GLY B 138 TRP B 142 1 N TYR B 140 O GLN B 165 SHEET 9 G 9 PHE B 122 LEU B 123 1 N PHE B 122 O LYS B 141 SHEET 1 H 7 ILE B 64 THR B 65 0 SHEET 2 H 7 GLY B 41 VAL B 45 1 N ILE B 42 O THR B 65 SHEET 3 H 7 GLU B 232 GLN B 236 1 O LEU B 235 N SER B 43 SHEET 4 H 7 VAL B 215 LEU B 217 1 N VAL B 215 O ALA B 234 SHEET 5 H 7 VAL B 197 VAL B 199 1 N VAL B 199 O THR B 216 SHEET 6 H 7 LEU B 170 MSE B 172 1 N LEU B 170 O THR B 198 SHEET 7 H 7 VAL B 146 VAL B 148 1 N VAL B 148 O SER B 171 SHEET 1 I 3 THR B 134 LEU B 135 0 SHEET 2 I 3 LEU B 152 GLU B 155 1 O THR B 153 N LEU B 135 SHEET 3 I 3 PHE B 178 ALA B 181 1 O THR B 179 N LEU B 152 LINK C GLY A 85 N MSE A 86 1555 1555 1.32 LINK C MSE A 86 N ILE A 87 1555 1555 1.34 LINK C SER A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N ALA A 173 1555 1555 1.34 LINK C GLY B 85 N MSE B 86 1555 1555 1.32 LINK C MSE B 86 N ILE B 87 1555 1555 1.33 LINK C SER B 171 N MSE B 172 1555 1555 1.34 LINK C MSE B 172 N ALA B 173 1555 1555 1.33 CISPEP 1 PRO A 46 ASP A 47 0 2.42 CISPEP 2 SER A 57 PRO A 58 0 9.75 CISPEP 3 ASP A 72 SER A 73 0 28.64 CISPEP 4 THR A 94 PRO A 95 0 7.55 CISPEP 5 PRO B 46 ASP B 47 0 -5.06 CISPEP 6 SER B 57 PRO B 58 0 6.85 CISPEP 7 THR B 94 PRO B 95 0 6.43 SITE 1 AC1 9 LEU A 37 ALA A 38 LYS A 39 VAL A 104 SITE 2 AC1 9 ALA A 107 GLU A 108 LEU A 228 SER A 229 SITE 3 AC1 9 GLN A 230 SITE 1 AC2 5 GLY B 66 PHE B 67 GLY B 68 LEU B 69 SITE 2 AC2 5 HOH B 484 CRYST1 97.580 97.580 106.610 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010248 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009380 0.00000