HEADER VIRAL PROTEIN 06-DEC-11 3UYW TITLE CRYSTAL STRUCTURES OF GLOBULAR HEAD OF 2009 PANDEMIC H1N1 TITLE 2 HEMAGGLUTININ COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 65-278; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS INFLUENZA VIRUS, SUBUNIT VACCINE, HEMAGGLUTININ (HA), VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.XUAN,Y.SHI,J.X.QI,H.X.XIAO,G.F.GAO REVDAT 2 08-NOV-23 3UYW 1 REMARK REVDAT 1 24-OCT-12 3UYW 0 JRNL AUTH C.L.XUAN,Y.SHI,J.X.QI,W.ZHANG,H.X.XIAO,G.F.GAO JRNL TITL STRUCTURAL VACCINOLOGY: STRUCTURE-BASED DESIGN OF INFLUENZA JRNL TITL 2 A VIRUS HEMAGGLUTININ SUBTYPE-SPECIFIC SUBUNIT VACCINES JRNL REF PROTEIN CELL V. 2 997 2011 JRNL REFN ISSN 1674-800X JRNL PMID 22231357 JRNL DOI 10.1007/S13238-011-1134-Y REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.080 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 58137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1396 - 5.2453 0.98 2704 148 0.1867 0.1834 REMARK 3 2 5.2453 - 4.1655 0.98 2693 163 0.1420 0.1500 REMARK 3 3 4.1655 - 3.6396 0.98 2745 133 0.1483 0.1569 REMARK 3 4 3.6396 - 3.3071 0.98 2683 158 0.1588 0.1751 REMARK 3 5 3.3071 - 3.0702 0.98 2737 144 0.1758 0.1781 REMARK 3 6 3.0702 - 2.8893 0.98 2721 149 0.1933 0.1918 REMARK 3 7 2.8893 - 2.7446 0.97 2623 146 0.1982 0.2247 REMARK 3 8 2.7446 - 2.6252 0.97 2735 133 0.2102 0.2335 REMARK 3 9 2.6252 - 2.5242 0.97 2656 145 0.2027 0.2133 REMARK 3 10 2.5242 - 2.4371 0.97 2686 139 0.2021 0.2404 REMARK 3 11 2.4371 - 2.3609 0.96 2669 141 0.2020 0.2235 REMARK 3 12 2.3609 - 2.2934 0.96 2670 120 0.2010 0.1851 REMARK 3 13 2.2934 - 2.2331 0.95 2659 146 0.2000 0.2174 REMARK 3 14 2.2331 - 2.1786 0.95 2615 141 0.1910 0.2100 REMARK 3 15 2.1786 - 2.1291 0.94 2578 138 0.1920 0.1997 REMARK 3 16 2.1291 - 2.0838 0.94 2627 145 0.1933 0.2325 REMARK 3 17 2.0838 - 2.0421 0.93 2515 143 0.1914 0.2273 REMARK 3 18 2.0421 - 2.0036 0.92 2557 124 0.2069 0.2728 REMARK 3 19 2.0036 - 1.9678 0.91 2558 133 0.2078 0.2380 REMARK 3 20 1.9678 - 1.9344 0.91 2430 133 0.2021 0.2232 REMARK 3 21 1.9344 - 1.9032 0.82 2333 121 0.2007 0.2184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 40.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.00460 REMARK 3 B22 (A**2) : -5.02130 REMARK 3 B33 (A**2) : -0.98330 REMARK 3 B12 (A**2) : 1.71810 REMARK 3 B13 (A**2) : -0.92760 REMARK 3 B23 (A**2) : 2.17500 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 7052 REMARK 3 ANGLE : 1.302 9567 REMARK 3 CHIRALITY : 0.126 990 REMARK 3 PLANARITY : 0.007 1230 REMARK 3 DIHEDRAL : 18.395 2516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 8.5222 -17.6252 32.2131 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0953 REMARK 3 T33: 0.0959 T12: 0.0034 REMARK 3 T13: 0.0076 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0146 L22: 0.1390 REMARK 3 L33: 0.2313 L12: 0.0146 REMARK 3 L13: 0.0310 L23: -0.0680 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.0025 S13: 0.0129 REMARK 3 S21: -0.0035 S22: -0.0005 S23: -0.0174 REMARK 3 S31: -0.0033 S32: -0.0102 S33: 0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3UYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59386 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3AL4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 5% MPD, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR C 247 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 211 OE2 GLU C 241 1.27 REMARK 500 O ASP A 92 N GLY A 94 1.69 REMARK 500 NH2 ARG A 211 CG GLU A 241 1.73 REMARK 500 O GLY A 59 CG2 THR A 88 1.79 REMARK 500 O SER C 163 O HOH C 555 1.81 REMARK 500 N ALA C 54 O HOH C 587 1.81 REMARK 500 O LEU A 76 O HOH A 586 1.81 REMARK 500 O HOH A 573 O HOH A 583 1.82 REMARK 500 O HOH A 709 O HOH A 772 1.82 REMARK 500 O HOH D 682 O HOH D 779 1.82 REMARK 500 N ALA D 54 O HOH D 605 1.82 REMARK 500 N ALA B 54 O HOH B 693 1.83 REMARK 500 NE2 GLN B 110 O HOH B 776 1.83 REMARK 500 O HOH D 335 O HOH D 721 1.83 REMARK 500 O HOH B 679 O HOH B 684 1.84 REMARK 500 O HOH D 713 O HOH D 779 1.84 REMARK 500 O HOH A 550 O HOH A 673 1.84 REMARK 500 O HOH A 477 O HOH A 691 1.85 REMARK 500 O HOH C 653 O HOH C 758 1.86 REMARK 500 NH2 ARG C 211 CD GLU C 241 1.87 REMARK 500 O HOH A 711 O HOH A 773 1.87 REMARK 500 OG SER A 168 O HOH A 327 1.87 REMARK 500 O THR A 88 O HOH A 703 1.88 REMARK 500 O HOH D 585 O HOH D 728 1.89 REMARK 500 N GLY A 146 O HOH A 566 1.90 REMARK 500 O HOH D 312 O HOH D 687 1.90 REMARK 500 O HOH C 560 O HOH C 634 1.90 REMARK 500 O HOH A 326 O HOH A 720 1.91 REMARK 500 O HOH A 673 O HOH A 754 1.91 REMARK 500 OG SER D 83 O HOH D 644 1.91 REMARK 500 O HOH C 490 O HOH C 528 1.92 REMARK 500 O HOH B 569 O HOH B 628 1.92 REMARK 500 O HOH D 778 O HOH D 789 1.92 REMARK 500 OG SER D 83 O HOH D 605 1.93 REMARK 500 O HOH C 775 O HOH C 786 1.93 REMARK 500 O CYS D 73 O HOH D 406 1.94 REMARK 500 O HOH B 698 O HOH B 700 1.94 REMARK 500 OD1 ASN A 200 O HOH A 598 1.94 REMARK 500 N1 TAU A 1 O HOH A 571 1.95 REMARK 500 O HOH A 632 O HOH A 818 1.96 REMARK 500 O HOH C 404 O HOH C 723 1.96 REMARK 500 O HOH A 674 O HOH A 709 1.96 REMARK 500 O HOH D 406 O HOH D 574 1.97 REMARK 500 CB SER D 83 O HOH D 644 1.99 REMARK 500 NZ LYS A 136 O HOH A 582 1.99 REMARK 500 O HOH B 663 O HOH B 776 1.99 REMARK 500 O HOH B 419 O HOH B 692 1.99 REMARK 500 O HOH C 756 O HOH C 774 2.00 REMARK 500 O HOH A 817 O HOH B 629 2.00 REMARK 500 O HOH D 299 O HOH D 441 2.00 REMARK 500 REMARK 500 THIS ENTRY HAS 86 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 219 CB GLU A 219 CG -0.129 REMARK 500 GLU B 219 CB GLU B 219 CG -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 89 C - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 GLN A 199 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLN B 199 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO C 89 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 SER C 91 N - CA - CB ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG C 119 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 119 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLN C 199 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG C 258 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG C 258 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG C 265 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D 119 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG D 119 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 LEU D 167 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG D 258 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 76 41.96 38.50 REMARK 500 THR A 78 -54.79 -123.93 REMARK 500 SER A 90 128.56 -178.27 REMARK 500 ASN A 93 26.82 -21.52 REMARK 500 SER A 149 -158.47 -147.87 REMARK 500 GLN A 199 -18.22 80.86 REMARK 500 LEU B 76 62.65 34.18 REMARK 500 THR B 78 -54.39 -124.37 REMARK 500 SER B 149 -157.85 -147.98 REMARK 500 GLN B 199 -5.58 73.96 REMARK 500 ARG B 258 -53.82 -124.33 REMARK 500 GLU C 74 -164.36 -70.30 REMARK 500 THR C 78 -54.64 -123.74 REMARK 500 SER C 90 -153.83 -131.44 REMARK 500 SER C 91 43.38 -99.51 REMARK 500 SER C 149 -158.44 -149.96 REMARK 500 GLN C 199 -20.87 82.20 REMARK 500 LEU D 76 45.13 37.79 REMARK 500 SER D 149 -159.67 -138.98 REMARK 500 GLN D 199 -26.48 80.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 89 SER A 90 -126.03 REMARK 500 ASN A 93 GLY A 94 136.18 REMARK 500 SER C 91 ASP C 92 132.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 89 11.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAU A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAU C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AL4 RELATED DB: PDB REMARK 900 RELATED ID: 3UYX RELATED DB: PDB DBREF 3UYW A 54 267 UNP C3W5S1 C3W5S1_I09A0 65 278 DBREF 3UYW B 54 267 UNP C3W5S1 C3W5S1_I09A0 65 278 DBREF 3UYW C 54 267 UNP C3W5S1 C3W5S1_I09A0 65 278 DBREF 3UYW D 54 267 UNP C3W5S1 C3W5S1_I09A0 65 278 SEQRES 1 A 214 ALA PRO LEU HIS LEU GLY LYS CYS ASN ILE ALA GLY TRP SEQRES 2 A 214 ILE LEU GLY ASN PRO GLU CYS GLU SER LEU SER THR ALA SEQRES 3 A 214 SER SER TRP SER TYR ILE VAL GLU THR PRO SER SER ASP SEQRES 4 A 214 ASN GLY THR CYS TYR PRO GLY ASP PHE ILE ASP TYR GLU SEQRES 5 A 214 GLU LEU ARG GLU GLN LEU SER SER VAL SER SER PHE GLU SEQRES 6 A 214 ARG PHE GLU ILE PHE PRO LYS THR SER SER TRP PRO ASN SEQRES 7 A 214 HIS ASP SER ASN LYS GLY VAL THR ALA ALA CYS PRO HIS SEQRES 8 A 214 ALA GLY ALA LYS SER PHE TYR LYS ASN LEU ILE TRP LEU SEQRES 9 A 214 VAL LYS LYS GLY ASN SER TYR PRO LYS LEU SER LYS SER SEQRES 10 A 214 TYR ILE ASN ASP LYS GLY LYS GLU VAL LEU VAL LEU TRP SEQRES 11 A 214 GLY ILE HIS HIS PRO SER THR SER ALA ASP GLN GLN SER SEQRES 12 A 214 LEU TYR GLN ASN ALA ASP THR TYR VAL PHE VAL GLY SER SEQRES 13 A 214 SER ARG TYR SER LYS LYS PHE LYS PRO GLU ILE ALA ILE SEQRES 14 A 214 ARG PRO LYS VAL ARG ASP GLN GLU GLY ARG MET ASN TYR SEQRES 15 A 214 TYR TRP THR LEU VAL GLU PRO GLY ASP LYS ILE THR PHE SEQRES 16 A 214 GLU ALA THR GLY ASN LEU VAL VAL PRO ARG TYR ALA PHE SEQRES 17 A 214 ALA MET GLU ARG ASN ALA SEQRES 1 B 214 ALA PRO LEU HIS LEU GLY LYS CYS ASN ILE ALA GLY TRP SEQRES 2 B 214 ILE LEU GLY ASN PRO GLU CYS GLU SER LEU SER THR ALA SEQRES 3 B 214 SER SER TRP SER TYR ILE VAL GLU THR PRO SER SER ASP SEQRES 4 B 214 ASN GLY THR CYS TYR PRO GLY ASP PHE ILE ASP TYR GLU SEQRES 5 B 214 GLU LEU ARG GLU GLN LEU SER SER VAL SER SER PHE GLU SEQRES 6 B 214 ARG PHE GLU ILE PHE PRO LYS THR SER SER TRP PRO ASN SEQRES 7 B 214 HIS ASP SER ASN LYS GLY VAL THR ALA ALA CYS PRO HIS SEQRES 8 B 214 ALA GLY ALA LYS SER PHE TYR LYS ASN LEU ILE TRP LEU SEQRES 9 B 214 VAL LYS LYS GLY ASN SER TYR PRO LYS LEU SER LYS SER SEQRES 10 B 214 TYR ILE ASN ASP LYS GLY LYS GLU VAL LEU VAL LEU TRP SEQRES 11 B 214 GLY ILE HIS HIS PRO SER THR SER ALA ASP GLN GLN SER SEQRES 12 B 214 LEU TYR GLN ASN ALA ASP THR TYR VAL PHE VAL GLY SER SEQRES 13 B 214 SER ARG TYR SER LYS LYS PHE LYS PRO GLU ILE ALA ILE SEQRES 14 B 214 ARG PRO LYS VAL ARG ASP GLN GLU GLY ARG MET ASN TYR SEQRES 15 B 214 TYR TRP THR LEU VAL GLU PRO GLY ASP LYS ILE THR PHE SEQRES 16 B 214 GLU ALA THR GLY ASN LEU VAL VAL PRO ARG TYR ALA PHE SEQRES 17 B 214 ALA MET GLU ARG ASN ALA SEQRES 1 C 214 ALA PRO LEU HIS LEU GLY LYS CYS ASN ILE ALA GLY TRP SEQRES 2 C 214 ILE LEU GLY ASN PRO GLU CYS GLU SER LEU SER THR ALA SEQRES 3 C 214 SER SER TRP SER TYR ILE VAL GLU THR PRO SER SER ASP SEQRES 4 C 214 ASN GLY THR CYS TYR PRO GLY ASP PHE ILE ASP TYR GLU SEQRES 5 C 214 GLU LEU ARG GLU GLN LEU SER SER VAL SER SER PHE GLU SEQRES 6 C 214 ARG PHE GLU ILE PHE PRO LYS THR SER SER TRP PRO ASN SEQRES 7 C 214 HIS ASP SER ASN LYS GLY VAL THR ALA ALA CYS PRO HIS SEQRES 8 C 214 ALA GLY ALA LYS SER PHE TYR LYS ASN LEU ILE TRP LEU SEQRES 9 C 214 VAL LYS LYS GLY ASN SER TYR PRO LYS LEU SER LYS SER SEQRES 10 C 214 TYR ILE ASN ASP LYS GLY LYS GLU VAL LEU VAL LEU TRP SEQRES 11 C 214 GLY ILE HIS HIS PRO SER THR SER ALA ASP GLN GLN SER SEQRES 12 C 214 LEU TYR GLN ASN ALA ASP THR TYR VAL PHE VAL GLY SER SEQRES 13 C 214 SER ARG TYR SER LYS LYS PHE LYS PRO GLU ILE ALA ILE SEQRES 14 C 214 ARG PRO LYS VAL ARG ASP GLN GLU GLY ARG MET ASN TYR SEQRES 15 C 214 TYR TRP THR LEU VAL GLU PRO GLY ASP LYS ILE THR PHE SEQRES 16 C 214 GLU ALA THR GLY ASN LEU VAL VAL PRO ARG TYR ALA PHE SEQRES 17 C 214 ALA MET GLU ARG ASN ALA SEQRES 1 D 214 ALA PRO LEU HIS LEU GLY LYS CYS ASN ILE ALA GLY TRP SEQRES 2 D 214 ILE LEU GLY ASN PRO GLU CYS GLU SER LEU SER THR ALA SEQRES 3 D 214 SER SER TRP SER TYR ILE VAL GLU THR PRO SER SER ASP SEQRES 4 D 214 ASN GLY THR CYS TYR PRO GLY ASP PHE ILE ASP TYR GLU SEQRES 5 D 214 GLU LEU ARG GLU GLN LEU SER SER VAL SER SER PHE GLU SEQRES 6 D 214 ARG PHE GLU ILE PHE PRO LYS THR SER SER TRP PRO ASN SEQRES 7 D 214 HIS ASP SER ASN LYS GLY VAL THR ALA ALA CYS PRO HIS SEQRES 8 D 214 ALA GLY ALA LYS SER PHE TYR LYS ASN LEU ILE TRP LEU SEQRES 9 D 214 VAL LYS LYS GLY ASN SER TYR PRO LYS LEU SER LYS SER SEQRES 10 D 214 TYR ILE ASN ASP LYS GLY LYS GLU VAL LEU VAL LEU TRP SEQRES 11 D 214 GLY ILE HIS HIS PRO SER THR SER ALA ASP GLN GLN SER SEQRES 12 D 214 LEU TYR GLN ASN ALA ASP THR TYR VAL PHE VAL GLY SER SEQRES 13 D 214 SER ARG TYR SER LYS LYS PHE LYS PRO GLU ILE ALA ILE SEQRES 14 D 214 ARG PRO LYS VAL ARG ASP GLN GLU GLY ARG MET ASN TYR SEQRES 15 D 214 TYR TRP THR LEU VAL GLU PRO GLY ASP LYS ILE THR PHE SEQRES 16 D 214 GLU ALA THR GLY ASN LEU VAL VAL PRO ARG TYR ALA PHE SEQRES 17 D 214 ALA MET GLU ARG ASN ALA HET TAU A 1 7 HET TAU C 1 7 HETNAM TAU 2-AMINOETHANESULFONIC ACID FORMUL 5 TAU 2(C2 H7 N O3 S) FORMUL 7 HOH *821(H2 O) HELIX 1 1 ASN A 62 GLY A 69 1 8 HELIX 2 2 ASP A 103 LEU A 111 1 9 HELIX 3 3 PRO A 124 TRP A 129 1 6 HELIX 4 4 THR A 190 GLN A 199 1 10 HELIX 5 5 ASN B 62 GLY B 69 1 8 HELIX 6 6 ASP B 103 LEU B 111 1 9 HELIX 7 7 PRO B 124 TRP B 129 1 6 HELIX 8 8 THR B 190 GLN B 199 1 10 HELIX 9 9 ASN C 62 GLY C 69 1 8 HELIX 10 10 ASP C 103 LEU C 111 1 9 HELIX 11 11 PRO C 124 TRP C 129 1 6 HELIX 12 12 THR C 190 TYR C 198 1 9 HELIX 13 13 ASN D 62 GLY D 69 1 8 HELIX 14 14 ASP D 103 LEU D 111 1 9 HELIX 15 15 PRO D 124 TRP D 129 1 6 HELIX 16 16 THR D 190 GLN D 199 1 10 SHEET 1 A 2 LEU A 56 HIS A 57 0 SHEET 2 A 2 ILE A 85 VAL A 86 1 O VAL A 86 N LEU A 56 SHEET 1 B 5 VAL A 114 PHE A 120 0 SHEET 2 B 5 ALA A 260 ARG A 265 -1 O ALA A 260 N PHE A 120 SHEET 3 B 5 GLU A 178 HIS A 187 -1 N LEU A 180 O PHE A 261 SHEET 4 B 5 LEU A 254 PRO A 257 -1 O VAL A 255 N GLY A 184 SHEET 5 B 5 LEU A 154 TRP A 156 -1 N ILE A 155 O VAL A 256 SHEET 1 C 4 VAL A 114 PHE A 120 0 SHEET 2 C 4 ALA A 260 ARG A 265 -1 O ALA A 260 N PHE A 120 SHEET 3 C 4 GLU A 178 HIS A 187 -1 N LEU A 180 O PHE A 261 SHEET 4 C 4 ARG A 232 VAL A 240 -1 O ARG A 232 N HIS A 187 SHEET 1 D 2 THR A 139 HIS A 144 0 SHEET 2 D 2 ALA A 147 SER A 149 -1 O SER A 149 N THR A 139 SHEET 1 E 4 LEU A 167 ILE A 172 0 SHEET 2 E 4 LYS A 245 ALA A 250 -1 O ALA A 250 N LEU A 167 SHEET 3 E 4 VAL A 205 GLY A 208 -1 N PHE A 206 O GLU A 249 SHEET 4 E 4 SER A 213 PHE A 216 -1 O PHE A 216 N VAL A 205 SHEET 1 F 2 LEU B 56 HIS B 57 0 SHEET 2 F 2 ILE B 85 VAL B 86 1 O VAL B 86 N LEU B 56 SHEET 1 G 5 VAL B 114 PHE B 120 0 SHEET 2 G 5 ALA B 260 ARG B 265 -1 O ALA B 260 N PHE B 120 SHEET 3 G 5 GLU B 178 HIS B 187 -1 N LEU B 180 O PHE B 261 SHEET 4 G 5 LEU B 254 PRO B 257 -1 O VAL B 255 N GLY B 184 SHEET 5 G 5 LEU B 154 TRP B 156 -1 N ILE B 155 O VAL B 256 SHEET 1 H 4 VAL B 114 PHE B 120 0 SHEET 2 H 4 ALA B 260 ARG B 265 -1 O ALA B 260 N PHE B 120 SHEET 3 H 4 GLU B 178 HIS B 187 -1 N LEU B 180 O PHE B 261 SHEET 4 H 4 ARG B 232 VAL B 240 -1 O ARG B 232 N HIS B 187 SHEET 1 I 2 THR B 139 HIS B 144 0 SHEET 2 I 2 ALA B 147 SER B 149 -1 O ALA B 147 N HIS B 144 SHEET 1 J 4 LEU B 167 ILE B 172 0 SHEET 2 J 4 LYS B 245 ALA B 250 -1 O ALA B 250 N LEU B 167 SHEET 3 J 4 VAL B 205 GLY B 208 -1 N PHE B 206 O GLU B 249 SHEET 4 J 4 SER B 213 PHE B 216 -1 O PHE B 216 N VAL B 205 SHEET 1 K 2 LEU C 56 HIS C 57 0 SHEET 2 K 2 ILE C 85 VAL C 86 1 O VAL C 86 N LEU C 56 SHEET 1 L 5 VAL C 114 PHE C 120 0 SHEET 2 L 5 ALA C 260 ARG C 265 -1 O ALA C 260 N PHE C 120 SHEET 3 L 5 GLU C 178 HIS C 187 -1 N LEU C 180 O PHE C 261 SHEET 4 L 5 LEU C 254 PRO C 257 -1 O VAL C 255 N GLY C 184 SHEET 5 L 5 LEU C 154 TRP C 156 -1 N ILE C 155 O VAL C 256 SHEET 1 M 4 VAL C 114 PHE C 120 0 SHEET 2 M 4 ALA C 260 ARG C 265 -1 O ALA C 260 N PHE C 120 SHEET 3 M 4 GLU C 178 HIS C 187 -1 N LEU C 180 O PHE C 261 SHEET 4 M 4 ARG C 232 VAL C 240 -1 O ARG C 232 N HIS C 187 SHEET 1 N 2 THR C 139 HIS C 144 0 SHEET 2 N 2 ALA C 147 SER C 149 -1 O SER C 149 N THR C 139 SHEET 1 O 4 LEU C 167 ILE C 172 0 SHEET 2 O 4 LYS C 245 ALA C 250 -1 O ALA C 250 N LEU C 167 SHEET 3 O 4 VAL C 205 GLY C 208 -1 N PHE C 206 O GLU C 249 SHEET 4 O 4 SER C 213 PHE C 216 -1 O PHE C 216 N VAL C 205 SHEET 1 P 2 LEU D 56 HIS D 57 0 SHEET 2 P 2 ILE D 85 VAL D 86 1 O VAL D 86 N LEU D 56 SHEET 1 Q 5 VAL D 114 PHE D 120 0 SHEET 2 Q 5 ALA D 260 ARG D 265 -1 O ALA D 260 N PHE D 120 SHEET 3 Q 5 GLU D 178 HIS D 187 -1 N LEU D 180 O PHE D 261 SHEET 4 Q 5 LEU D 254 PRO D 257 -1 O VAL D 255 N GLY D 184 SHEET 5 Q 5 LEU D 154 TRP D 156 -1 N ILE D 155 O VAL D 256 SHEET 1 R 4 VAL D 114 PHE D 120 0 SHEET 2 R 4 ALA D 260 ARG D 265 -1 O ALA D 260 N PHE D 120 SHEET 3 R 4 GLU D 178 HIS D 187 -1 N LEU D 180 O PHE D 261 SHEET 4 R 4 ARG D 232 VAL D 240 -1 O ARG D 232 N HIS D 187 SHEET 1 S 2 THR D 139 HIS D 144 0 SHEET 2 S 2 ALA D 147 SER D 149 -1 O ALA D 147 N HIS D 144 SHEET 1 T 4 LEU D 167 ILE D 172 0 SHEET 2 T 4 LYS D 245 ALA D 250 -1 O ALA D 250 N LEU D 167 SHEET 3 T 4 VAL D 205 GLY D 208 -1 N GLY D 208 O THR D 247 SHEET 4 T 4 SER D 213 PHE D 216 -1 O PHE D 216 N VAL D 205 SSBOND 1 CYS A 61 CYS A 73 1555 1555 1.89 SSBOND 2 CYS A 96 CYS A 142 1555 1555 2.05 SSBOND 3 CYS B 61 CYS B 73 1555 1555 2.02 SSBOND 4 CYS B 96 CYS B 142 1555 1555 2.04 SSBOND 5 CYS C 61 CYS C 73 1555 1555 1.90 SSBOND 6 CYS C 96 CYS C 142 1555 1555 2.05 SSBOND 7 CYS D 61 CYS D 73 1555 1555 2.03 SSBOND 8 CYS D 96 CYS D 142 1555 1555 2.05 CISPEP 1 PRO C 89 SER C 90 0 -2.32 SITE 1 AC1 7 TYR A 97 HIS A 186 PRO A 188 SER A 189 SITE 2 AC1 7 ASP A 193 HOH A 296 HOH A 571 SITE 1 AC2 7 TYR C 97 HIS C 186 PRO C 188 SER C 189 SITE 2 AC2 7 ASP C 193 HOH C 278 HOH C 559 CRYST1 38.670 65.916 79.485 94.46 89.97 94.88 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025860 0.002208 0.000159 0.00000 SCALE2 0.000000 0.015226 0.001191 0.00000 SCALE3 0.000000 0.000000 0.012619 0.00000