HEADER HYDROLASE 09-DEC-11 3V1K TITLE CRYSTAL STRUCTURE OF THE H265Q MUTANT OF A C-C HYDROLASE, BPHD FROM TITLE 2 BURKHOLDERIA XENOVORANS LB400. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-HYDROXY-6-OXO-6-PHENYLHEXA-2,4-DIENOATE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HOPDA HYDROLASE, 2,6-DIOXO-6-PHENYLHEXA-3-ENOATE HYDROLASE; COMPND 5 EC: 3.7.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 GENE: BPHD, BXENO_C1120, BXE_C1186; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS C-C BOND HYDROLASE, ALPHA/BETA HYDROLASE FOLD, BPHD, ALPHA/BETA KEYWDS 2 HYDROLASE, PCB DEGRADATION, META CLEAVAGE PRODUCT HYDROLASE, MCP KEYWDS 3 HYDROLASE, 2-HYDROXY-6-OXO-6-PHENYL-HEXA-2, 4-DIENOATE HYDROLASE, KEYWDS 4 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GHOSH,J.T.BOLIN REVDAT 5 28-FEB-24 3V1K 1 REMARK SEQADV REVDAT 4 08-NOV-17 3V1K 1 REMARK REVDAT 3 29-APR-15 3V1K 1 HETSYN REVDAT 2 11-APR-12 3V1K 1 JRNL REVDAT 1 21-MAR-12 3V1K 0 JRNL AUTH A.C.RUZZINI,S.GHOSH,G.P.HORSMAN,L.J.FOSTER,J.T.BOLIN, JRNL AUTH 2 L.D.ELTIS JRNL TITL IDENTIFICATION OF AN ACYL-ENZYME INTERMEDIATE IN A JRNL TITL 2 META-CLEAVAGE PRODUCT HYDROLASE REVEALS THE VERSATILITY OF JRNL TITL 3 THE CATALYTIC TRIAD. JRNL REF J.AM.CHEM.SOC. V. 134 4615 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 22339283 JRNL DOI 10.1021/JA208544G REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 117.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4490 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.842 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4628 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3166 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6264 ; 1.268 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7685 ; 0.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 572 ; 5.746 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;37.906 ;23.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 780 ;15.775 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5211 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 989 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3V1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000069478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39177 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.125 REMARK 200 RESOLUTION RANGE LOW (A) : 117.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.94800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, 3 % V/V REMARK 280 ETHYLENE GLYCOL, PH 6.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.92233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.84467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.92233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.84467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 135.99200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 32 O HOH A 383 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 -111.83 29.37 REMARK 500 ASN A 75 -121.81 47.97 REMARK 500 SER A 112 -112.47 59.32 REMARK 500 TRP A 266 65.11 -115.81 REMARK 500 VAL B 13 126.51 -170.24 REMARK 500 LYS B 18 -112.61 32.76 REMARK 500 ASP B 22 57.07 39.41 REMARK 500 ALA B 62 0.40 -66.23 REMARK 500 PRO B 72 108.83 -55.17 REMARK 500 ASN B 75 -149.63 48.51 REMARK 500 SER B 112 -107.07 65.85 REMARK 500 TYR B 125 59.25 -119.63 REMARK 500 PHE B 145 -45.94 -136.84 REMARK 500 PRO B 163 82.39 -66.45 REMARK 500 TRP B 266 77.71 -100.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLA A 287 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OG1 RELATED DB: PDB REMARK 900 BPHD WILD TYPE REMARK 900 RELATED ID: 2RI6 RELATED DB: PDB REMARK 900 BPHD S112A MUTANT REMARK 900 RELATED ID: 2PU7 RELATED DB: PDB REMARK 900 BPHD S112A/H265A MUTANT REMARK 900 RELATED ID: 2PUH RELATED DB: PDB REMARK 900 BPHD S112A MUTANT IN COMPLEX WITH SUBSTRATE HOPDA REMARK 900 RELATED ID: 2PUJ RELATED DB: PDB REMARK 900 BPHD S112A/H265Q MUTANT IN COMPLEX WITH SUBSTRATE HOPDA REMARK 900 RELATED ID: 2RHW RELATED DB: PDB REMARK 900 BPHD S112A MUTANT IN COMPLEX WITH 3, 10 - DIFLUORO HOPDA REMARK 900 RELATED ID: 2RHT RELATED DB: PDB REMARK 900 BPHD S112A MUTANT IN COMPLEX WITH 3-CL HOPDA REMARK 900 RELATED ID: 3V1L RELATED DB: PDB REMARK 900 RELATED ID: 3V1M RELATED DB: PDB REMARK 900 RELATED ID: 3V1N RELATED DB: PDB DBREF 3V1K A 1 286 UNP P47229 BPHD_BURXL 1 286 DBREF 3V1K B 1 286 UNP P47229 BPHD_BURXL 1 286 SEQADV 3V1K GLN A 265 UNP P47229 HIS 265 ENGINEERED MUTATION SEQADV 3V1K GLN B 265 UNP P47229 HIS 265 ENGINEERED MUTATION SEQRES 1 A 286 MET THR ALA LEU THR GLU SER SER THR SER LYS PHE VAL SEQRES 2 A 286 LYS ILE ASN GLU LYS GLY PHE SER ASP PHE ASN ILE HIS SEQRES 3 A 286 TYR ASN GLU ALA GLY ASN GLY GLU THR VAL ILE MET LEU SEQRES 4 A 286 HIS GLY GLY GLY PRO GLY ALA GLY GLY TRP SER ASN TYR SEQRES 5 A 286 TYR ARG ASN VAL GLY PRO PHE VAL ASP ALA GLY TYR ARG SEQRES 6 A 286 VAL ILE LEU LYS ASP SER PRO GLY PHE ASN LYS SER ASP SEQRES 7 A 286 ALA VAL VAL MET ASP GLU GLN ARG GLY LEU VAL ASN ALA SEQRES 8 A 286 ARG ALA VAL LYS GLY LEU MET ASP ALA LEU ASP ILE ASP SEQRES 9 A 286 ARG ALA HIS LEU VAL GLY ASN SER MET GLY GLY ALA THR SEQRES 10 A 286 ALA LEU ASN PHE ALA LEU GLU TYR PRO ASP ARG ILE GLY SEQRES 11 A 286 LYS LEU ILE LEU MET GLY PRO GLY GLY LEU GLY PRO SER SEQRES 12 A 286 MET PHE ALA PRO MET PRO MET GLU GLY ILE LYS LEU LEU SEQRES 13 A 286 PHE LYS LEU TYR ALA GLU PRO SER TYR GLU THR LEU LYS SEQRES 14 A 286 GLN MET LEU GLN VAL PHE LEU TYR ASP GLN SER LEU ILE SEQRES 15 A 286 THR GLU GLU LEU LEU GLN GLY ARG TRP GLU ALA ILE GLN SEQRES 16 A 286 ARG GLN PRO GLU HIS LEU LYS ASN PHE LEU ILE SER ALA SEQRES 17 A 286 GLN LYS ALA PRO LEU SER THR TRP ASP VAL THR ALA ARG SEQRES 18 A 286 LEU GLY GLU ILE LYS ALA LYS THR PHE ILE THR TRP GLY SEQRES 19 A 286 ARG ASP ASP ARG PHE VAL PRO LEU ASP HIS GLY LEU LYS SEQRES 20 A 286 LEU LEU TRP ASN ILE ASP ASP ALA ARG LEU HIS VAL PHE SEQRES 21 A 286 SER LYS CYS GLY GLN TRP ALA GLN TRP GLU HIS ALA ASP SEQRES 22 A 286 GLU PHE ASN ARG LEU VAL ILE ASP PHE LEU ARG HIS ALA SEQRES 1 B 286 MET THR ALA LEU THR GLU SER SER THR SER LYS PHE VAL SEQRES 2 B 286 LYS ILE ASN GLU LYS GLY PHE SER ASP PHE ASN ILE HIS SEQRES 3 B 286 TYR ASN GLU ALA GLY ASN GLY GLU THR VAL ILE MET LEU SEQRES 4 B 286 HIS GLY GLY GLY PRO GLY ALA GLY GLY TRP SER ASN TYR SEQRES 5 B 286 TYR ARG ASN VAL GLY PRO PHE VAL ASP ALA GLY TYR ARG SEQRES 6 B 286 VAL ILE LEU LYS ASP SER PRO GLY PHE ASN LYS SER ASP SEQRES 7 B 286 ALA VAL VAL MET ASP GLU GLN ARG GLY LEU VAL ASN ALA SEQRES 8 B 286 ARG ALA VAL LYS GLY LEU MET ASP ALA LEU ASP ILE ASP SEQRES 9 B 286 ARG ALA HIS LEU VAL GLY ASN SER MET GLY GLY ALA THR SEQRES 10 B 286 ALA LEU ASN PHE ALA LEU GLU TYR PRO ASP ARG ILE GLY SEQRES 11 B 286 LYS LEU ILE LEU MET GLY PRO GLY GLY LEU GLY PRO SER SEQRES 12 B 286 MET PHE ALA PRO MET PRO MET GLU GLY ILE LYS LEU LEU SEQRES 13 B 286 PHE LYS LEU TYR ALA GLU PRO SER TYR GLU THR LEU LYS SEQRES 14 B 286 GLN MET LEU GLN VAL PHE LEU TYR ASP GLN SER LEU ILE SEQRES 15 B 286 THR GLU GLU LEU LEU GLN GLY ARG TRP GLU ALA ILE GLN SEQRES 16 B 286 ARG GLN PRO GLU HIS LEU LYS ASN PHE LEU ILE SER ALA SEQRES 17 B 286 GLN LYS ALA PRO LEU SER THR TRP ASP VAL THR ALA ARG SEQRES 18 B 286 LEU GLY GLU ILE LYS ALA LYS THR PHE ILE THR TRP GLY SEQRES 19 B 286 ARG ASP ASP ARG PHE VAL PRO LEU ASP HIS GLY LEU LYS SEQRES 20 B 286 LEU LEU TRP ASN ILE ASP ASP ALA ARG LEU HIS VAL PHE SEQRES 21 B 286 SER LYS CYS GLY GLN TRP ALA GLN TRP GLU HIS ALA ASP SEQRES 22 B 286 GLU PHE ASN ARG LEU VAL ILE ASP PHE LEU ARG HIS ALA HET MLA A 287 7 HETNAM MLA MALONIC ACID HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID FORMUL 3 MLA C3 H4 O4 FORMUL 4 HOH *126(H2 O) HELIX 1 1 GLY A 47 TYR A 53 1 7 HELIX 2 2 ASN A 55 ALA A 62 1 8 HELIX 3 3 GLN A 85 ASP A 102 1 18 HELIX 4 4 SER A 112 TYR A 125 1 14 HELIX 5 5 MET A 150 GLU A 162 1 13 HELIX 6 6 SER A 164 LEU A 176 1 13 HELIX 7 7 ASP A 178 ILE A 182 5 5 HELIX 8 8 THR A 183 GLN A 197 1 15 HELIX 9 9 GLN A 197 ALA A 211 1 15 HELIX 10 10 PRO A 212 ASP A 217 5 6 HELIX 11 11 VAL A 218 ILE A 225 5 8 HELIX 12 12 LEU A 242 ILE A 252 1 11 HELIX 13 13 TRP A 266 HIS A 271 1 6 HELIX 14 14 HIS A 271 ALA A 286 1 16 HELIX 15 15 THR B 5 THR B 9 1 5 HELIX 16 16 GLY B 47 TYR B 53 1 7 HELIX 17 17 ASN B 55 ALA B 62 1 8 HELIX 18 18 GLN B 85 LEU B 101 1 17 HELIX 19 19 SER B 112 TYR B 125 1 14 HELIX 20 20 MET B 150 GLU B 162 1 13 HELIX 21 21 SER B 164 LEU B 176 1 13 HELIX 22 22 ASP B 178 ILE B 182 5 5 HELIX 23 23 THR B 183 GLN B 197 1 15 HELIX 24 24 PRO B 198 ALA B 211 1 14 HELIX 25 25 PRO B 212 ASP B 217 5 6 HELIX 26 26 VAL B 218 ILE B 225 5 8 HELIX 27 27 LEU B 242 ILE B 252 1 11 HELIX 28 28 TRP B 266 HIS B 271 1 6 HELIX 29 29 HIS B 271 ALA B 286 1 16 SHEET 1 A16 SER A 10 GLU A 17 0 SHEET 2 A16 PHE A 20 ALA A 30 -1 O TYR A 27 N LYS A 11 SHEET 3 A16 ARG A 65 LYS A 69 -1 O LEU A 68 N ASN A 28 SHEET 4 A16 THR A 35 LEU A 39 1 N MET A 38 O ILE A 67 SHEET 5 A16 ALA A 106 ASN A 111 1 O HIS A 107 N THR A 35 SHEET 6 A16 ILE A 129 MET A 135 1 O MET A 135 N GLY A 110 SHEET 7 A16 THR A 229 GLY A 234 1 O THR A 232 N LEU A 134 SHEET 8 A16 ALA A 255 PHE A 260 1 O ARG A 256 N ILE A 231 SHEET 9 A16 ALA B 255 PHE B 260 -1 O VAL B 259 N LEU A 257 SHEET 10 A16 LYS B 228 GLY B 234 1 N ILE B 231 O ARG B 256 SHEET 11 A16 ILE B 129 MET B 135 1 N LEU B 134 O THR B 232 SHEET 12 A16 ALA B 106 ASN B 111 1 N ALA B 106 O GLY B 130 SHEET 13 A16 THR B 35 LEU B 39 1 N ILE B 37 O HIS B 107 SHEET 14 A16 ARG B 65 LYS B 69 1 O ARG B 65 N VAL B 36 SHEET 15 A16 PHE B 23 ALA B 30 -1 N ASN B 28 O LEU B 68 SHEET 16 A16 SER B 10 ILE B 15 -1 N LYS B 11 O TYR B 27 CISPEP 1 MET A 148 PRO A 149 0 3.12 CISPEP 2 MET B 148 PRO B 149 0 2.13 SITE 1 AC1 10 GLY A 41 GLY A 43 ALA A 46 ASN A 51 SITE 2 AC1 10 ASN A 111 SER A 112 PHE A 175 ARG A 190 SITE 3 AC1 10 GLN A 265 TRP A 266 CRYST1 135.992 135.992 65.767 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007353 0.004245 0.000000 0.00000 SCALE2 0.000000 0.008491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015205 0.00000