data_3V1M # _entry.id 3V1M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3V1M RCSB RCSB069480 WWPDB D_1000069480 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2OG1 'BphD Wild type' unspecified PDB 2RI6 'BphD S112A mutant' unspecified PDB 2PU7 'BphD S112A/H265A mutant' unspecified PDB 2PUH 'BphD S112A mutant in complex with substrate HOPDA' unspecified PDB 2PUJ 'BphD S112A/H265Q mutant in complex with substrate HOPDA' unspecified PDB 2RHW 'BphD S112A mutant in complex with 3, 10 - difluoro HOPDA' unspecified PDB 2RHT 'BphD S112A mutant in complex with 3-Cl HOPDA' unspecified PDB 3V1K . unspecified PDB 3V1L . unspecified PDB 3V1N . unspecified # _pdbx_database_status.entry_id 3V1M _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2011-12-09 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ghosh, S.' 1 'Bolin, J.T.' 2 # _citation.id primary _citation.title 'Identification of an Acyl-Enzyme Intermediate in a meta-Cleavage Product Hydrolase Reveals the Versatility of the Catalytic Triad.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 134 _citation.page_first 4615 _citation.page_last 4624 _citation.year 2012 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22339283 _citation.pdbx_database_id_DOI 10.1021/ja208544g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ruzzini, A.C.' 1 primary 'Ghosh, S.' 2 primary 'Horsman, G.P.' 3 primary 'Foster, L.J.' 4 primary 'Bolin, J.T.' 5 primary 'Eltis, L.D.' 6 # _cell.length_a 117.085 _cell.length_b 117.085 _cell.length_c 87.187 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3V1M _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.entry_id 3V1M _symmetry.Int_Tables_number 98 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase' 32042.633 1 3.7.1.8 S112A,H265Q ? ? 2 non-polymer syn 'MALONATE ION' 102.046 1 ? ? ? ? 3 non-polymer syn '(3E)-2,6-DIOXO-6-PHENYLHEX-3-ENOATE' 217.197 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HOPDA hydrolase, 2,6-dioxo-6-phenylhexa-3-enoate hydrolase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLY AEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFV PLDHGLKLLWNIDDARLHVFSKCGQWAQWEHADEFNRLVIDFLRHA ; _entity_poly.pdbx_seq_one_letter_code_can ;MTALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLY AEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFV PLDHGLKLLWNIDDARLHVFSKCGQWAQWEHADEFNRLVIDFLRHA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 ALA n 1 4 LEU n 1 5 THR n 1 6 GLU n 1 7 SER n 1 8 SER n 1 9 THR n 1 10 SER n 1 11 LYS n 1 12 PHE n 1 13 VAL n 1 14 LYS n 1 15 ILE n 1 16 ASN n 1 17 GLU n 1 18 LYS n 1 19 GLY n 1 20 PHE n 1 21 SER n 1 22 ASP n 1 23 PHE n 1 24 ASN n 1 25 ILE n 1 26 HIS n 1 27 TYR n 1 28 ASN n 1 29 GLU n 1 30 ALA n 1 31 GLY n 1 32 ASN n 1 33 GLY n 1 34 GLU n 1 35 THR n 1 36 VAL n 1 37 ILE n 1 38 MET n 1 39 LEU n 1 40 HIS n 1 41 GLY n 1 42 GLY n 1 43 GLY n 1 44 PRO n 1 45 GLY n 1 46 ALA n 1 47 GLY n 1 48 GLY n 1 49 TRP n 1 50 SER n 1 51 ASN n 1 52 TYR n 1 53 TYR n 1 54 ARG n 1 55 ASN n 1 56 VAL n 1 57 GLY n 1 58 PRO n 1 59 PHE n 1 60 VAL n 1 61 ASP n 1 62 ALA n 1 63 GLY n 1 64 TYR n 1 65 ARG n 1 66 VAL n 1 67 ILE n 1 68 LEU n 1 69 LYS n 1 70 ASP n 1 71 SER n 1 72 PRO n 1 73 GLY n 1 74 PHE n 1 75 ASN n 1 76 LYS n 1 77 SER n 1 78 ASP n 1 79 ALA n 1 80 VAL n 1 81 VAL n 1 82 MET n 1 83 ASP n 1 84 GLU n 1 85 GLN n 1 86 ARG n 1 87 GLY n 1 88 LEU n 1 89 VAL n 1 90 ASN n 1 91 ALA n 1 92 ARG n 1 93 ALA n 1 94 VAL n 1 95 LYS n 1 96 GLY n 1 97 LEU n 1 98 MET n 1 99 ASP n 1 100 ALA n 1 101 LEU n 1 102 ASP n 1 103 ILE n 1 104 ASP n 1 105 ARG n 1 106 ALA n 1 107 HIS n 1 108 LEU n 1 109 VAL n 1 110 GLY n 1 111 ASN n 1 112 ALA n 1 113 MET n 1 114 GLY n 1 115 GLY n 1 116 ALA n 1 117 THR n 1 118 ALA n 1 119 LEU n 1 120 ASN n 1 121 PHE n 1 122 ALA n 1 123 LEU n 1 124 GLU n 1 125 TYR n 1 126 PRO n 1 127 ASP n 1 128 ARG n 1 129 ILE n 1 130 GLY n 1 131 LYS n 1 132 LEU n 1 133 ILE n 1 134 LEU n 1 135 MET n 1 136 GLY n 1 137 PRO n 1 138 GLY n 1 139 GLY n 1 140 LEU n 1 141 GLY n 1 142 PRO n 1 143 SER n 1 144 MET n 1 145 PHE n 1 146 ALA n 1 147 PRO n 1 148 MET n 1 149 PRO n 1 150 MET n 1 151 GLU n 1 152 GLY n 1 153 ILE n 1 154 LYS n 1 155 LEU n 1 156 LEU n 1 157 PHE n 1 158 LYS n 1 159 LEU n 1 160 TYR n 1 161 ALA n 1 162 GLU n 1 163 PRO n 1 164 SER n 1 165 TYR n 1 166 GLU n 1 167 THR n 1 168 LEU n 1 169 LYS n 1 170 GLN n 1 171 MET n 1 172 LEU n 1 173 GLN n 1 174 VAL n 1 175 PHE n 1 176 LEU n 1 177 TYR n 1 178 ASP n 1 179 GLN n 1 180 SER n 1 181 LEU n 1 182 ILE n 1 183 THR n 1 184 GLU n 1 185 GLU n 1 186 LEU n 1 187 LEU n 1 188 GLN n 1 189 GLY n 1 190 ARG n 1 191 TRP n 1 192 GLU n 1 193 ALA n 1 194 ILE n 1 195 GLN n 1 196 ARG n 1 197 GLN n 1 198 PRO n 1 199 GLU n 1 200 HIS n 1 201 LEU n 1 202 LYS n 1 203 ASN n 1 204 PHE n 1 205 LEU n 1 206 ILE n 1 207 SER n 1 208 ALA n 1 209 GLN n 1 210 LYS n 1 211 ALA n 1 212 PRO n 1 213 LEU n 1 214 SER n 1 215 THR n 1 216 TRP n 1 217 ASP n 1 218 VAL n 1 219 THR n 1 220 ALA n 1 221 ARG n 1 222 LEU n 1 223 GLY n 1 224 GLU n 1 225 ILE n 1 226 LYS n 1 227 ALA n 1 228 LYS n 1 229 THR n 1 230 PHE n 1 231 ILE n 1 232 THR n 1 233 TRP n 1 234 GLY n 1 235 ARG n 1 236 ASP n 1 237 ASP n 1 238 ARG n 1 239 PHE n 1 240 VAL n 1 241 PRO n 1 242 LEU n 1 243 ASP n 1 244 HIS n 1 245 GLY n 1 246 LEU n 1 247 LYS n 1 248 LEU n 1 249 LEU n 1 250 TRP n 1 251 ASN n 1 252 ILE n 1 253 ASP n 1 254 ASP n 1 255 ALA n 1 256 ARG n 1 257 LEU n 1 258 HIS n 1 259 VAL n 1 260 PHE n 1 261 SER n 1 262 LYS n 1 263 CYS n 1 264 GLY n 1 265 GLN n 1 266 TRP n 1 267 ALA n 1 268 GLN n 1 269 TRP n 1 270 GLU n 1 271 HIS n 1 272 ALA n 1 273 ASP n 1 274 GLU n 1 275 PHE n 1 276 ASN n 1 277 ARG n 1 278 LEU n 1 279 VAL n 1 280 ILE n 1 281 ASP n 1 282 PHE n 1 283 LEU n 1 284 ARG n 1 285 HIS n 1 286 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'bphD, Bxeno_C1120, Bxe_C1186' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain LB400 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia xenovorans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 266265 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5a _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BPHD_BURXL _struct_ref.pdbx_db_accession P47229 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTALTESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPGFNKSDAV VMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLY AEPSYETLKQMLQVFLYDQSLITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFV PLDHGLKLLWNIDDARLHVFSKCGHWAQWEHADEFNRLVIDFLRHA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3V1M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 286 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P47229 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 286 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 286 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3V1M ALA A 112 ? UNP P47229 SER 112 'ENGINEERED MUTATION' 112 1 1 3V1M GLN A 265 ? UNP P47229 HIS 265 'ENGINEERED MUTATION' 265 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 HPK non-polymer . '(3E)-2,6-DIOXO-6-PHENYLHEX-3-ENOATE' ? 'C12 H9 O4 -1' 217.197 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLI non-polymer . 'MALONATE ION' ? 'C3 H2 O4 -2' 102.046 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3V1M _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSING, SITTING DROP, MICROSEEDING' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '2.4 M Sodium malonate, pH 7.0, VAPOR DIFFUSING, SITTING DROP, MICROSEEDING, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-12-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'C(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97872 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.pdbx_wavelength_list 0.97872 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-F # _reflns.entry_id 3V1M _reflns.d_resolution_high 1.920 _reflns.d_resolution_low 82.7900 _reflns.number_obs 23211 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_netI_over_sigmaI 10.700 _reflns.pdbx_chi_squared 1.004 _reflns.pdbx_redundancy 8.100 _reflns.percent_possible_obs 99.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.920 1.990 ? ? ? 0.389 ? ? 0.988 5.000 ? 2228 97.000 1 1 1.990 2.070 ? ? ? 0.358 ? ? 0.955 7.300 ? 2275 100.000 2 1 2.070 2.160 ? ? ? 0.278 ? ? 0.996 8.400 ? 2303 100.000 3 1 2.160 2.280 ? ? ? 0.214 ? ? 0.999 8.600 ? 2302 100.000 4 1 2.280 2.420 ? ? ? 0.150 ? ? 0.994 8.600 ? 2315 100.000 5 1 2.420 2.610 ? ? ? 0.113 ? ? 1.031 8.600 ? 2328 100.000 6 1 2.610 2.870 ? ? ? 0.086 ? ? 1.049 8.600 ? 2324 99.900 7 1 2.870 3.280 ? ? ? 0.060 ? ? 1.044 8.600 ? 2333 99.700 8 1 3.280 4.140 ? ? ? 0.063 ? ? 0.953 8.600 ? 2361 99.500 9 1 4.140 50.000 ? ? ? 0.041 ? ? 1.013 8.200 ? 2442 98.000 10 1 # _refine.entry_id 3V1M _refine.ls_d_res_high 1.9200 _refine.ls_d_res_low 82.7900 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.3400 _refine.ls_number_reflns_obs 23191 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1825 _refine.ls_R_factor_R_work 0.1803 _refine.ls_wR_factor_R_work 0.1803 _refine.ls_R_factor_R_free 0.2248 _refine.ls_wR_factor_R_free 0.2270 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1189 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 24.7694 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.9000 _refine.aniso_B[2][2] 0.9000 _refine.aniso_B[3][3] -1.7900 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9610 _refine.correlation_coeff_Fo_to_Fc_free 0.9370 _refine.overall_SU_R_Cruickshank_DPI 0.1593 _refine.overall_SU_R_free 0.1475 _refine.pdbx_overall_ESU_R 0.1590 _refine.pdbx_overall_ESU_R_Free 0.1480 _refine.overall_SU_ML 0.1030 _refine.overall_SU_B 3.5160 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8357 _refine.B_iso_max 57.010 _refine.B_iso_min 14.030 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2238 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 2382 _refine_hist.d_res_high 1.9200 _refine_hist.d_res_low 82.7900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2415 0.008 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1642 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 3279 1.172 1.950 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3979 0.837 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 298 5.366 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 115 36.977 23.826 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 397 13.812 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 14 16.384 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 335 0.065 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2765 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 544 0.002 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9220 _refine_ls_shell.d_res_low 1.9720 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 95.6000 _refine_ls_shell.number_reflns_R_work 1421 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2560 _refine_ls_shell.R_factor_R_free 0.3050 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1499 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3V1M _struct.title ;Crystal Structure of the S112A/H265Q mutant of a C-C hydrolase, BphD from Burkholderia xenovorans LB400, after exposure to its substrate HOPDA ; _struct.pdbx_descriptor '2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (E.C.3.7.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3V1M _struct_keywords.text ;C-C bond hydrolase, Alpha/beta hydrolase fold, BPHD, ALPHA/BETA HYDROLASE, PCB DEGRADATION, META CLEAVAGE PRODUCT HYDROLASE, MCP HYDROLASE, 2-HYDROXY-6-OXO-6-PHENYL-HEXA-2, 4-DIENOATE HYDROLASE, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 5 ? THR A 9 ? THR A 5 THR A 9 1 ? 5 HELX_P HELX_P2 2 GLY A 47 ? TYR A 53 ? GLY A 47 TYR A 53 1 ? 7 HELX_P HELX_P3 3 ASN A 55 ? ALA A 62 ? ASN A 55 ALA A 62 1 ? 8 HELX_P HELX_P4 4 GLN A 85 ? LEU A 101 ? GLN A 85 LEU A 101 1 ? 17 HELX_P HELX_P5 5 ALA A 112 ? TYR A 125 ? ALA A 112 TYR A 125 1 ? 14 HELX_P HELX_P6 6 MET A 150 ? GLU A 162 ? MET A 150 GLU A 162 1 ? 13 HELX_P HELX_P7 7 SER A 164 ? LEU A 176 ? SER A 164 LEU A 176 1 ? 13 HELX_P HELX_P8 8 ASP A 178 ? ILE A 182 ? ASP A 178 ILE A 182 5 ? 5 HELX_P HELX_P9 9 THR A 183 ? GLN A 197 ? THR A 183 GLN A 197 1 ? 15 HELX_P HELX_P10 10 GLN A 197 ? ALA A 211 ? GLN A 197 ALA A 211 1 ? 15 HELX_P HELX_P11 11 PRO A 212 ? ASP A 217 ? PRO A 212 ASP A 217 5 ? 6 HELX_P HELX_P12 12 VAL A 218 ? ILE A 225 ? VAL A 218 ILE A 225 5 ? 8 HELX_P HELX_P13 13 LEU A 242 ? ILE A 252 ? LEU A 242 ILE A 252 1 ? 11 HELX_P HELX_P14 14 TRP A 266 ? HIS A 271 ? TRP A 266 HIS A 271 1 ? 6 HELX_P HELX_P15 15 HIS A 271 ? ALA A 286 ? HIS A 271 ALA A 286 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MET _struct_mon_prot_cis.label_seq_id 148 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MET _struct_mon_prot_cis.auth_seq_id 148 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 149 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 149 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.54 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 10 ? GLU A 17 ? SER A 10 GLU A 17 A 2 PHE A 20 ? ALA A 30 ? PHE A 20 ALA A 30 A 3 ARG A 65 ? LYS A 69 ? ARG A 65 LYS A 69 A 4 THR A 35 ? LEU A 39 ? THR A 35 LEU A 39 A 5 ALA A 106 ? ASN A 111 ? ALA A 106 ASN A 111 A 6 ILE A 129 ? MET A 135 ? ILE A 129 MET A 135 A 7 THR A 229 ? GLY A 234 ? THR A 229 GLY A 234 A 8 ALA A 255 ? PHE A 260 ? ALA A 255 PHE A 260 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 15 ? N ILE A 15 O PHE A 23 ? O PHE A 23 A 2 3 N ASN A 28 ? N ASN A 28 O LEU A 68 ? O LEU A 68 A 3 4 O ARG A 65 ? O ARG A 65 N VAL A 36 ? N VAL A 36 A 4 5 N ILE A 37 ? N ILE A 37 O HIS A 107 ? O HIS A 107 A 5 6 N LEU A 108 ? N LEU A 108 O ILE A 133 ? O ILE A 133 A 6 7 N LEU A 134 ? N LEU A 134 O THR A 232 ? O THR A 232 A 7 8 N ILE A 231 ? N ILE A 231 O ARG A 256 ? O ARG A 256 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE MLI A 287' AC2 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE HPK A 288' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 GLU A 34 ? GLU A 34 . ? 1_555 ? 2 AC1 12 THR A 35 ? THR A 35 . ? 1_555 ? 3 AC1 12 ARG A 65 ? ARG A 65 . ? 1_555 ? 4 AC1 12 ILE A 103 ? ILE A 103 . ? 1_555 ? 5 AC1 12 ASP A 104 ? ASP A 104 . ? 1_555 ? 6 AC1 12 ARG A 105 ? ARG A 105 . ? 1_555 ? 7 AC1 12 SER A 180 ? SER A 180 . ? 3_555 ? 8 AC1 12 ILE A 182 ? ILE A 182 . ? 3_555 ? 9 AC1 12 HOH D . ? HOH A 316 . ? 3_555 ? 10 AC1 12 HOH D . ? HOH A 379 . ? 1_555 ? 11 AC1 12 HOH D . ? HOH A 391 . ? 1_555 ? 12 AC1 12 HOH D . ? HOH A 392 . ? 1_555 ? 13 AC2 13 GLY A 41 ? GLY A 41 . ? 1_555 ? 14 AC2 13 GLY A 42 ? GLY A 42 . ? 1_555 ? 15 AC2 13 GLY A 43 ? GLY A 43 . ? 1_555 ? 16 AC2 13 ALA A 46 ? ALA A 46 . ? 1_555 ? 17 AC2 13 ALA A 112 ? ALA A 112 . ? 1_555 ? 18 AC2 13 MET A 113 ? MET A 113 . ? 1_555 ? 19 AC2 13 ILE A 153 ? ILE A 153 . ? 1_555 ? 20 AC2 13 PHE A 175 ? PHE A 175 . ? 1_555 ? 21 AC2 13 ARG A 190 ? ARG A 190 . ? 1_555 ? 22 AC2 13 VAL A 240 ? VAL A 240 . ? 1_555 ? 23 AC2 13 TRP A 266 ? TRP A 266 . ? 1_555 ? 24 AC2 13 HOH D . ? HOH A 374 . ? 1_555 ? 25 AC2 13 HOH D . ? HOH A 399 . ? 1_555 ? # _atom_sites.entry_id 3V1M _atom_sites.fract_transf_matrix[1][1] 0.008541 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008541 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011470 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 HIS 26 26 26 HIS HIS A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 ASN 75 75 75 ASN ASN A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 MET 135 135 135 MET MET A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 MET 144 144 144 MET MET A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 MET 148 148 148 MET MET A . n A 1 149 PRO 149 149 149 PRO PRO A . n A 1 150 MET 150 150 150 MET MET A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 PRO 163 163 163 PRO PRO A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 LEU 168 168 168 LEU LEU A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 GLN 170 170 170 GLN GLN A . n A 1 171 MET 171 171 171 MET MET A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 GLN 173 173 173 GLN GLN A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 TYR 177 177 177 TYR TYR A . n A 1 178 ASP 178 178 178 ASP ASP A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 GLU 185 185 185 GLU GLU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 LEU 187 187 187 LEU LEU A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 ARG 190 190 190 ARG ARG A . n A 1 191 TRP 191 191 191 TRP TRP A . n A 1 192 GLU 192 192 192 GLU GLU A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ILE 194 194 194 ILE ILE A . n A 1 195 GLN 195 195 195 GLN GLN A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 GLN 197 197 197 GLN GLN A . n A 1 198 PRO 198 198 198 PRO PRO A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 HIS 200 200 200 HIS HIS A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 PHE 204 204 204 PHE PHE A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 ALA 208 208 208 ALA ALA A . n A 1 209 GLN 209 209 209 GLN GLN A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 PRO 212 212 212 PRO PRO A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 THR 215 215 215 THR THR A . n A 1 216 TRP 216 216 216 TRP TRP A . n A 1 217 ASP 217 217 217 ASP ASP A . n A 1 218 VAL 218 218 218 VAL VAL A . n A 1 219 THR 219 219 219 THR THR A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 ARG 221 221 221 ARG ARG A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 GLU 224 224 224 GLU GLU A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 LYS 228 228 228 LYS LYS A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 ILE 231 231 231 ILE ILE A . n A 1 232 THR 232 232 232 THR THR A . n A 1 233 TRP 233 233 233 TRP TRP A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 ASP 236 236 236 ASP ASP A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 ARG 238 238 238 ARG ARG A . n A 1 239 PHE 239 239 239 PHE PHE A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 HIS 244 244 244 HIS HIS A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 LYS 247 247 247 LYS LYS A . n A 1 248 LEU 248 248 248 LEU LEU A . n A 1 249 LEU 249 249 249 LEU LEU A . n A 1 250 TRP 250 250 250 TRP TRP A . n A 1 251 ASN 251 251 251 ASN ASN A . n A 1 252 ILE 252 252 252 ILE ILE A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 ASP 254 254 254 ASP ASP A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ARG 256 256 256 ARG ARG A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 HIS 258 258 258 HIS HIS A . n A 1 259 VAL 259 259 259 VAL VAL A . n A 1 260 PHE 260 260 260 PHE PHE A . n A 1 261 SER 261 261 261 SER SER A . n A 1 262 LYS 262 262 262 LYS LYS A . n A 1 263 CYS 263 263 263 CYS CYS A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 GLN 265 265 265 GLN GLN A . n A 1 266 TRP 266 266 266 TRP TRP A . n A 1 267 ALA 267 267 267 ALA ALA A . n A 1 268 GLN 268 268 268 GLN GLN A . n A 1 269 TRP 269 269 269 TRP TRP A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 HIS 271 271 271 HIS HIS A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 ASP 273 273 273 ASP ASP A . n A 1 274 GLU 274 274 274 GLU GLU A . n A 1 275 PHE 275 275 275 PHE PHE A . n A 1 276 ASN 276 276 276 ASN ASN A . n A 1 277 ARG 277 277 277 ARG ARG A . n A 1 278 LEU 278 278 278 LEU LEU A . n A 1 279 VAL 279 279 279 VAL VAL A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 ASP 281 281 281 ASP ASP A . n A 1 282 PHE 282 282 282 PHE PHE A . n A 1 283 LEU 283 283 283 LEU LEU A . n A 1 284 ARG 284 284 284 ARG ARG A . n A 1 285 HIS 285 285 285 HIS HIS A . n A 1 286 ALA 286 286 286 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI 1 287 1 MLI MLI A . C 3 HPK 1 288 1 HPK HKE A . D 4 HOH 1 289 1 HOH HOH A . D 4 HOH 2 290 2 HOH HOH A . D 4 HOH 3 291 3 HOH HOH A . D 4 HOH 4 292 4 HOH HOH A . D 4 HOH 5 293 5 HOH HOH A . D 4 HOH 6 294 6 HOH HOH A . D 4 HOH 7 295 7 HOH HOH A . D 4 HOH 8 296 8 HOH HOH A . D 4 HOH 9 297 9 HOH HOH A . D 4 HOH 10 298 10 HOH HOH A . D 4 HOH 11 299 11 HOH HOH A . D 4 HOH 12 300 12 HOH HOH A . D 4 HOH 13 301 13 HOH HOH A . D 4 HOH 14 302 14 HOH HOH A . D 4 HOH 15 303 15 HOH HOH A . D 4 HOH 16 304 16 HOH HOH A . D 4 HOH 17 305 17 HOH HOH A . D 4 HOH 18 306 18 HOH HOH A . D 4 HOH 19 307 19 HOH HOH A . D 4 HOH 20 308 20 HOH HOH A . D 4 HOH 21 309 21 HOH HOH A . D 4 HOH 22 310 22 HOH HOH A . D 4 HOH 23 311 23 HOH HOH A . D 4 HOH 24 312 24 HOH HOH A . D 4 HOH 25 313 25 HOH HOH A . D 4 HOH 26 314 26 HOH HOH A . D 4 HOH 27 315 27 HOH HOH A . D 4 HOH 28 316 28 HOH HOH A . D 4 HOH 29 317 29 HOH HOH A . D 4 HOH 30 318 30 HOH HOH A . D 4 HOH 31 319 31 HOH HOH A . D 4 HOH 32 320 32 HOH HOH A . D 4 HOH 33 321 33 HOH HOH A . D 4 HOH 34 322 34 HOH HOH A . D 4 HOH 35 323 35 HOH HOH A . D 4 HOH 36 324 36 HOH HOH A . D 4 HOH 37 325 37 HOH HOH A . D 4 HOH 38 326 38 HOH HOH A . D 4 HOH 39 327 39 HOH HOH A . D 4 HOH 40 328 40 HOH HOH A . D 4 HOH 41 329 41 HOH HOH A . D 4 HOH 42 330 42 HOH HOH A . D 4 HOH 43 331 43 HOH HOH A . D 4 HOH 44 332 44 HOH HOH A . D 4 HOH 45 333 45 HOH HOH A . D 4 HOH 46 334 46 HOH HOH A . D 4 HOH 47 335 47 HOH HOH A . D 4 HOH 48 336 48 HOH HOH A . D 4 HOH 49 337 49 HOH HOH A . D 4 HOH 50 338 50 HOH HOH A . D 4 HOH 51 339 51 HOH HOH A . D 4 HOH 52 340 52 HOH HOH A . D 4 HOH 53 341 53 HOH HOH A . D 4 HOH 54 342 54 HOH HOH A . D 4 HOH 55 343 55 HOH HOH A . D 4 HOH 56 344 56 HOH HOH A . D 4 HOH 57 345 57 HOH HOH A . D 4 HOH 58 346 58 HOH HOH A . D 4 HOH 59 347 59 HOH HOH A . D 4 HOH 60 348 60 HOH HOH A . D 4 HOH 61 349 61 HOH HOH A . D 4 HOH 62 350 62 HOH HOH A . D 4 HOH 63 351 63 HOH HOH A . D 4 HOH 64 352 64 HOH HOH A . D 4 HOH 65 353 65 HOH HOH A . D 4 HOH 66 354 66 HOH HOH A . D 4 HOH 67 355 67 HOH HOH A . D 4 HOH 68 356 68 HOH HOH A . D 4 HOH 69 357 69 HOH HOH A . D 4 HOH 70 358 70 HOH HOH A . D 4 HOH 71 359 71 HOH HOH A . D 4 HOH 72 360 72 HOH HOH A . D 4 HOH 73 361 73 HOH HOH A . D 4 HOH 74 362 74 HOH HOH A . D 4 HOH 75 363 75 HOH HOH A . D 4 HOH 76 364 76 HOH HOH A . D 4 HOH 77 365 77 HOH HOH A . D 4 HOH 78 366 78 HOH HOH A . D 4 HOH 79 367 79 HOH HOH A . D 4 HOH 80 368 80 HOH HOH A . D 4 HOH 81 369 81 HOH HOH A . D 4 HOH 82 370 82 HOH HOH A . D 4 HOH 83 371 83 HOH HOH A . D 4 HOH 84 372 84 HOH HOH A . D 4 HOH 85 373 85 HOH HOH A . D 4 HOH 86 374 86 HOH HOH A . D 4 HOH 87 375 87 HOH HOH A . D 4 HOH 88 376 88 HOH HOH A . D 4 HOH 89 377 89 HOH HOH A . D 4 HOH 90 378 90 HOH HOH A . D 4 HOH 91 379 91 HOH HOH A . D 4 HOH 92 380 92 HOH HOH A . D 4 HOH 93 381 93 HOH HOH A . D 4 HOH 94 382 94 HOH HOH A . D 4 HOH 95 383 95 HOH HOH A . D 4 HOH 96 384 96 HOH HOH A . D 4 HOH 97 385 97 HOH HOH A . D 4 HOH 98 386 98 HOH HOH A . D 4 HOH 99 387 99 HOH HOH A . D 4 HOH 100 388 100 HOH HOH A . D 4 HOH 101 389 101 HOH HOH A . D 4 HOH 102 390 102 HOH HOH A . D 4 HOH 103 391 103 HOH HOH A . D 4 HOH 104 392 104 HOH HOH A . D 4 HOH 105 393 105 HOH HOH A . D 4 HOH 106 394 106 HOH HOH A . D 4 HOH 107 395 107 HOH HOH A . D 4 HOH 108 396 108 HOH HOH A . D 4 HOH 109 397 109 HOH HOH A . D 4 HOH 110 398 110 HOH HOH A . D 4 HOH 111 399 111 HOH HOH A . D 4 HOH 112 400 112 HOH HOH A . D 4 HOH 113 401 113 HOH HOH A . D 4 HOH 114 402 114 HOH HOH A . D 4 HOH 115 403 115 HOH HOH A . D 4 HOH 116 404 116 HOH HOH A . D 4 HOH 117 405 117 HOH HOH A . D 4 HOH 118 406 118 HOH HOH A . D 4 HOH 119 407 119 HOH HOH A . D 4 HOH 120 408 120 HOH HOH A . D 4 HOH 121 409 121 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11340 ? 1 MORE -50 ? 1 'SSA (A^2)' 37740 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 10_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 15_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-03-21 2 'Structure model' 1 1 2012-04-11 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_phasing_MR.entry_id 3V1M _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 32.110 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.920 _pdbx_phasing_MR.d_res_low_rotation 37.030 _pdbx_phasing_MR.d_res_high_translation 1.920 _pdbx_phasing_MR.d_res_low_translation 37.030 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _pdbx_entry_details.entry_id 3V1M _pdbx_entry_details.nonpolymer_details 'WATER 379 MAY BE A CATION SUCH AS NA+ BUT THIS WAS NOT TESTED' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ND2 A ASN 111 ? B OE1 A GLN 265 ? ? 2.11 2 1 O A ARG 105 ? ? O A HOH 379 ? ? 2.12 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 18 ? ? 34.22 -119.41 2 1 ASN A 75 ? ? 49.83 -124.01 3 1 ALA A 112 ? ? 59.52 -117.55 4 1 ALA A 112 ? ? 54.00 -117.55 5 1 LEU A 140 ? ? -90.96 34.56 6 1 TRP A 266 ? A -100.81 75.05 7 1 TRP A 266 ? C -105.09 56.71 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ALA 3 ? A ALA 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MALONATE ION' MLI 3 '(3E)-2,6-DIOXO-6-PHENYLHEX-3-ENOATE' HPK 4 water HOH #