HEADER CALCIUM BINDING PROTEIN 10-DEC-11 3V1W TITLE MOLECULAR BASIS FOR MULTIPLE LIGAND BINDING OF CALSEQUESTRIN AND TITLE 2 POTENTIAL INHIBITION BY CAFFEINE AND GALLOCATECIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALSEQUESTRIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTACTIN, CALSEQUESTRIN, SKELETAL MUSCLE ISOFORM, COMPND 5 LAMININ-BINDING PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: EUROPEAN RABBIT,JAPANESE WHITE RABBIT,DOMESTIC SOURCE 4 RABBIT,RABBITS; SOURCE 5 ORGANISM_TAXID: 9986 KEYWDS THIOREDOXIN FOLD, CALCIUM BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SUBRAMANIAN,M.N.NISSEN,K.M.LEWIS,E.J.SANCHEZ,A.K.MURALIDHARAN, AUTHOR 2 C.KANG REVDAT 3 13-SEP-23 3V1W 1 REMARK HETSYN REVDAT 2 29-JUL-20 3V1W 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 12-DEC-12 3V1W 0 JRNL AUTH A.K.SUBRAMANIAN,M.N.NISSEN,K.M.LEWIS,E.J.SANCHEZ, JRNL AUTH 2 A.K.MURALIDHARAN,C.KANG JRNL TITL MOLECULAR BASIS FOR MULTIPLE LIGAND BINDING OF CALSEQUESTRIN JRNL TITL 2 AND POTENTIAL INHIBITION BY CAFFEINE AND GALLOCATECIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 36846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.380 REMARK 3 FREE R VALUE TEST SET COUNT : 1981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9578 - 4.5963 0.99 2671 153 0.1727 0.2257 REMARK 3 2 4.5963 - 3.6491 1.00 2574 145 0.1469 0.1773 REMARK 3 3 3.6491 - 3.1880 1.00 2530 145 0.1517 0.2024 REMARK 3 4 3.1880 - 2.8967 1.00 2531 144 0.1805 0.1953 REMARK 3 5 2.8967 - 2.6891 1.00 2512 142 0.1880 0.2614 REMARK 3 6 2.6891 - 2.5306 0.99 2509 142 0.1832 0.2462 REMARK 3 7 2.5306 - 2.4039 0.99 2506 142 0.1870 0.2492 REMARK 3 8 2.4039 - 2.2992 0.99 2464 141 0.1707 0.2306 REMARK 3 9 2.2992 - 2.2107 0.99 2469 140 0.1799 0.2392 REMARK 3 10 2.2107 - 2.1345 0.98 2465 139 0.1673 0.2579 REMARK 3 11 2.1345 - 2.0677 0.99 2465 140 0.1730 0.2388 REMARK 3 12 2.0677 - 2.0086 0.98 2443 139 0.1695 0.2721 REMARK 3 13 2.0086 - 1.9557 0.98 2442 138 0.1840 0.2291 REMARK 3 14 1.9557 - 1.9080 0.92 2284 131 0.1795 0.2529 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 42.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.99850 REMARK 3 B22 (A**2) : 1.32850 REMARK 3 B33 (A**2) : 2.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3018 REMARK 3 ANGLE : 1.122 4139 REMARK 3 CHIRALITY : 0.082 443 REMARK 3 PLANARITY : 0.005 536 REMARK 3 DIHEDRAL : 16.311 1128 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3V1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36850 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.908 REMARK 200 RESOLUTION RANGE LOW (A) : 44.015 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3TRQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.48250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.48250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.54100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.29600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.54100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.29600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.48250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.54100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.29600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.48250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.54100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.29600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -195.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 59.08200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 166.44750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ILE A 351 REMARK 465 ASN A 352 REMARK 465 THR A 353 REMARK 465 GLU A 354 REMARK 465 ASP A 355 REMARK 465 ASP A 356 REMARK 465 ASP A 357 REMARK 465 ASP A 358 REMARK 465 GLU A 359 REMARK 465 ASP A 360 REMARK 465 ASP A 361 REMARK 465 ASP A 362 REMARK 465 ASP A 363 REMARK 465 ASP A 364 REMARK 465 ASP A 365 REMARK 465 ASP A 366 REMARK 465 ASP A 367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 348 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 52 OE2 GLU A 52 3656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 78 -64.58 -103.97 REMARK 500 GLU A 100 -115.64 50.81 REMARK 500 ASP A 210 34.34 70.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 406 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 17 OD1 REMARK 620 2 VAL A 18 O 110.2 REMARK 620 3 LEU A 74 O 123.3 88.7 REMARK 620 4 ASP A 80 OD2 118.2 82.5 116.9 REMARK 620 5 HOH A 501 O 76.8 172.7 88.8 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 172 O REMARK 620 2 HOH A 856 O 83.2 REMARK 620 3 HOH A 865 O 95.4 102.2 REMARK 620 4 HOH A 874 O 160.2 78.2 81.9 REMARK 620 5 HOH A 924 O 98.0 77.1 166.3 84.5 REMARK 620 6 HOH A1007 O 114.5 159.5 86.8 85.0 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 408 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 189 O REMARK 620 2 THR A 189 OG1 68.5 REMARK 620 3 HOH A 520 O 89.6 128.8 REMARK 620 4 HOH A 581 O 130.7 80.2 81.3 REMARK 620 5 HOH A 621 O 65.7 125.4 78.8 154.1 REMARK 620 6 HOH A 876 O 117.5 100.0 130.7 104.3 77.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 407 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 199 OE1 REMARK 620 2 GLU A 199 OE2 53.5 REMARK 620 3 THR A 229 OG1 131.4 77.9 REMARK 620 4 THR A 277 OG1 81.1 94.4 103.2 REMARK 620 5 THR A 277 O 139.9 160.3 86.6 77.1 REMARK 620 6 HOH A 731 O 83.0 133.0 142.6 95.6 66.3 REMARK 620 7 HOH A 875 O 99.0 107.4 96.8 153.1 86.4 57.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 409 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 O REMARK 620 2 PRO A 212 O 81.7 REMARK 620 3 GLU A 217 OE1 113.4 95.2 REMARK 620 4 GLU A 217 OE2 117.3 143.6 49.5 REMARK 620 5 HOH A 660 O 158.3 80.2 80.2 84.3 REMARK 620 6 HOH A 943 O 100.9 154.7 106.5 57.0 90.5 REMARK 620 7 HOH A1008 O 83.6 82.8 162.5 127.5 82.4 72.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 248 O REMARK 620 2 ASN A 316 OD1 76.1 REMARK 620 3 THR A 318 OG1 132.4 75.7 REMARK 620 4 HOH A1009 O 120.7 116.6 106.1 REMARK 620 N 1 2 3 DBREF 3V1W A 1 367 UNP P07221 CASQ1_RABIT 29 395 SEQRES 1 A 367 GLU GLU GLY LEU ASP PHE PRO GLU TYR ASP GLY VAL ASP SEQRES 2 A 367 ARG VAL ILE ASN VAL ASN ALA LYS ASN TYR LYS ASN VAL SEQRES 3 A 367 PHE LYS LYS TYR GLU VAL LEU ALA LEU LEU TYR HIS GLU SEQRES 4 A 367 PRO PRO GLU ASP ASP LYS ALA SER GLN ARG GLN PHE GLU SEQRES 5 A 367 MET GLU GLU LEU ILE LEU GLU LEU ALA ALA GLN VAL LEU SEQRES 6 A 367 GLU ASP LYS GLY VAL GLY PHE GLY LEU VAL ASP SER GLU SEQRES 7 A 367 LYS ASP ALA ALA VAL ALA LYS LYS LEU GLY LEU THR GLU SEQRES 8 A 367 GLU ASP SER ILE TYR VAL PHE LYS GLU ASP GLU VAL ILE SEQRES 9 A 367 GLU TYR ASP GLY GLU PHE SER ALA ASP THR LEU VAL GLU SEQRES 10 A 367 PHE LEU LEU ASP VAL LEU GLU ASP PRO VAL GLU LEU ILE SEQRES 11 A 367 GLU GLY GLU ARG GLU LEU GLN ALA PHE GLU ASN ILE GLU SEQRES 12 A 367 ASP GLU ILE LYS LEU ILE GLY TYR PHE LYS ASN LYS ASP SEQRES 13 A 367 SER GLU HIS TYR LYS ALA PHE LYS GLU ALA ALA GLU GLU SEQRES 14 A 367 PHE HIS PRO TYR ILE PRO PHE PHE ALA THR PHE ASP SER SEQRES 15 A 367 LYS VAL ALA LYS LYS LEU THR LEU LYS LEU ASN GLU ILE SEQRES 16 A 367 ASP PHE TYR GLU ALA PHE MET GLU GLU PRO VAL THR ILE SEQRES 17 A 367 PRO ASP LYS PRO ASN SER GLU GLU GLU ILE VAL ASN PHE SEQRES 18 A 367 VAL GLU GLU HIS ARG ARG SER THR LEU ARG LYS LEU LYS SEQRES 19 A 367 PRO GLU SER MET TYR GLU THR TRP GLU ASP ASP MET ASP SEQRES 20 A 367 GLY ILE HIS ILE VAL ALA PHE ALA GLU GLU ALA ASP PRO SEQRES 21 A 367 ASP GLY TYR GLU PHE LEU GLU ILE LEU LYS SER VAL ALA SEQRES 22 A 367 GLN ASP ASN THR ASP ASN PRO ASP LEU SER ILE ILE TRP SEQRES 23 A 367 ILE ASP PRO ASP ASP PHE PRO LEU LEU VAL PRO TYR TRP SEQRES 24 A 367 GLU LYS THR PHE ASP ILE ASP LEU SER ALA PRO GLN ILE SEQRES 25 A 367 GLY VAL VAL ASN VAL THR ASP ALA ASP SER VAL TRP MET SEQRES 26 A 367 GLU MET ASP ASP GLU GLU ASP LEU PRO SER ALA GLU GLU SEQRES 27 A 367 LEU GLU ASP TRP LEU GLU ASP VAL LEU GLU GLY GLU ILE SEQRES 28 A 367 ASN THR GLU ASP ASP ASP ASP GLU ASP ASP ASP ASP ASP SEQRES 29 A 367 ASP ASP ASP MODRES 3V1W ASN A 316 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MPD A 403 8 HET MPD A 404 8 HET MRD A 405 8 HET CA A 406 1 HET CA A 407 1 HET CA A 408 1 HET CA A 409 1 HET NA A 410 1 HET NA A 411 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 MRD C6 H14 O2 FORMUL 6 CA 4(CA 2+) FORMUL 10 NA 2(NA 1+) FORMUL 12 HOH *514(H2 O) HELIX 1 1 ASN A 22 TYR A 30 1 9 HELIX 2 2 ASP A 44 LEU A 65 1 22 HELIX 3 3 ASP A 80 GLY A 88 1 9 HELIX 4 4 SER A 111 GLU A 124 1 14 HELIX 5 5 GLY A 132 ILE A 142 1 11 HELIX 6 6 SER A 157 HIS A 171 1 15 HELIX 7 7 ASP A 181 THR A 189 1 9 HELIX 8 8 SER A 214 HIS A 225 1 12 HELIX 9 9 LYS A 234 GLU A 236 5 3 HELIX 10 10 SER A 237 ASP A 244 1 8 HELIX 11 11 ASP A 259 ASN A 276 1 18 HELIX 12 12 ASP A 288 PHE A 292 5 5 HELIX 13 13 LEU A 295 ASP A 304 1 10 HELIX 14 14 SER A 335 GLU A 350 1 16 SHEET 1 A 5 ILE A 16 ASN A 17 0 SHEET 2 A 5 VAL A 70 ASP A 76 1 O PHE A 72 N ILE A 16 SHEET 3 A 5 VAL A 32 HIS A 38 1 N LEU A 36 O VAL A 75 SHEET 4 A 5 SER A 94 LYS A 99 -1 O TYR A 96 N LEU A 35 SHEET 5 A 5 GLU A 102 GLU A 105 -1 O ILE A 104 N VAL A 97 SHEET 1 B 5 VAL A 127 LEU A 129 0 SHEET 2 B 5 PHE A 176 THR A 179 1 O PHE A 176 N GLU A 128 SHEET 3 B 5 LYS A 147 TYR A 151 1 N LEU A 148 O PHE A 177 SHEET 4 B 5 ILE A 195 TYR A 198 -1 O TYR A 198 N LYS A 147 SHEET 5 B 5 VAL A 206 THR A 207 -1 O VAL A 206 N PHE A 197 SHEET 1 C 5 LEU A 230 LYS A 232 0 SHEET 2 C 5 ILE A 284 ILE A 287 1 O TRP A 286 N ARG A 231 SHEET 3 C 5 ILE A 249 PHE A 254 1 N ALA A 253 O ILE A 287 SHEET 4 C 5 GLN A 311 ASN A 316 -1 O VAL A 315 N HIS A 250 SHEET 5 C 5 SER A 322 TRP A 324 -1 O VAL A 323 N VAL A 314 LINK ND2 ASN A 316 C1 NAG B 1 1555 1555 1.41 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK OD1 ASN A 17 CA CA A 406 1555 1555 2.30 LINK O VAL A 18 CA CA A 406 1555 1555 2.50 LINK O LEU A 74 CA CA A 406 1555 1555 2.46 LINK OD2 ASP A 80 CA CA A 406 1555 1555 2.47 LINK O PRO A 172 NA NA A 410 1555 1555 2.15 LINK O THR A 189 CA CA A 408 1555 1555 2.23 LINK OG1 THR A 189 CA CA A 408 1555 1555 2.57 LINK OE1 GLU A 199 CA CA A 407 1555 1555 2.43 LINK OE2 GLU A 199 CA CA A 407 1555 1555 2.45 LINK O ASP A 210 CA CA A 409 1555 1555 2.36 LINK O PRO A 212 CA CA A 409 1555 1555 2.40 LINK OE1 GLU A 217 CA CA A 409 1555 1555 2.44 LINK OE2 GLU A 217 CA CA A 409 1555 1555 2.71 LINK OG1 THR A 229 CA CA A 407 1555 1555 2.41 LINK O GLY A 248 NA NA A 411 1555 1555 3.16 LINK OG1 THR A 277 CA CA A 407 1555 1555 2.36 LINK O THR A 277 CA CA A 407 1555 1555 2.49 LINK OD1 ASN A 316 NA NA A 411 1555 1555 3.03 LINK OG1 THR A 318 NA NA A 411 1555 1555 2.45 LINK CA CA A 406 O HOH A 501 1555 1555 2.56 LINK CA CA A 407 O HOH A 731 1555 1555 3.12 LINK CA CA A 407 O HOH A 875 1555 1555 2.35 LINK CA CA A 408 O HOH A 520 1555 1555 2.36 LINK CA CA A 408 O HOH A 581 1555 1555 2.40 LINK CA CA A 408 O HOH A 621 1555 1555 2.93 LINK CA CA A 408 O HOH A 876 1555 1555 2.35 LINK CA CA A 409 O HOH A 660 1555 1555 2.41 LINK CA CA A 409 O HOH A 943 1555 1555 2.26 LINK CA CA A 409 O HOH A1008 1555 1555 2.34 LINK NA NA A 410 O HOH A 856 1555 1555 2.47 LINK NA NA A 410 O HOH A 865 1555 1555 2.41 LINK NA NA A 410 O HOH A 874 1555 1555 2.47 LINK NA NA A 410 O HOH A 924 1555 1555 2.37 LINK NA NA A 410 O HOH A1007 1555 1555 2.32 LINK NA NA A 411 O HOH A1009 1555 1555 2.38 CISPEP 1 HIS A 171 PRO A 172 0 -2.19 CISPEP 2 LYS A 211 PRO A 212 0 -3.70 CRYST1 59.082 144.592 110.965 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009012 0.00000