HEADER HYDROLASE/DNA 11-DEC-11 3V1Z TITLE CRYSTAL STRUCTURE OF TYPE IIF RESTRICTION ENDONUCLEASE BSE634I WITH TITLE 2 COGNATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE BSE634IR; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.21.4; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*TP*CP*GP*CP*GP*CP*CP*GP*GP*CP*GP*CP*G)-3'); COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: 1422; SOURCE 5 GENE: BSE634IR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2267; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PUC18; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES KEYWDS RESTRICTION ENDONUCLEASE, PROTEIN-DNA COMPLEX, HYDROLASE, HYDROLASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.N.MANAKOVA,S.GRAZULIS,D.GOLOVENKO,G.TAMULAITIENE REVDAT 3 13-SEP-23 3V1Z 1 REMARK SEQADV REVDAT 2 14-NOV-12 3V1Z 1 JRNL REVDAT 1 25-APR-12 3V1Z 0 JRNL AUTH E.MANAKOVA,S.GRAZULIS,M.ZAREMBA,G.TAMULAITIENE,D.GOLOVENKO, JRNL AUTH 2 V.SIKSNYS JRNL TITL STRUCTURAL MECHANISMS OF THE DEGENERATE SEQUENCE RECOGNITION JRNL TITL 2 BY BSE634I RESTRICTION ENDONUCLEASE. JRNL REF NUCLEIC ACIDS RES. V. 40 6741 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22495930 JRNL DOI 10.1093/NAR/GKS300 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 33238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3719 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1814 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4695 REMARK 3 NUCLEIC ACID ATOMS : 526 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34000 REMARK 3 B22 (A**2) : 3.75000 REMARK 3 B33 (A**2) : -2.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.366 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.198 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.142 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5448 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7482 ; 1.009 ; 2.085 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 591 ; 5.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;33.749 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 929 ;14.788 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 847 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3876 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2936 ; 0.329 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4790 ; 0.604 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2512 ; 0.721 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2692 ; 1.156 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 292 REMARK 3 RESIDUE RANGE : A 301 A 422 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8904 5.5243 60.1388 REMARK 3 T TENSOR REMARK 3 T11: 0.0151 T22: 0.0161 REMARK 3 T33: 0.0541 T12: -0.0052 REMARK 3 T13: -0.0144 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.7687 L22: 0.4857 REMARK 3 L33: 1.3062 L12: -0.0424 REMARK 3 L13: 0.1206 L23: 0.0082 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.0748 S13: 0.0569 REMARK 3 S21: 0.0672 S22: 0.0069 S23: -0.1119 REMARK 3 S31: -0.0846 S32: 0.0944 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 292 REMARK 3 RESIDUE RANGE : B 301 B 361 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0448 15.8495 4.1074 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.0383 REMARK 3 T33: 0.0469 T12: 0.0471 REMARK 3 T13: 0.0084 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.6161 L22: 0.4955 REMARK 3 L33: 1.1264 L12: 0.0006 REMARK 3 L13: 0.0494 L23: 0.0829 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0782 S13: 0.1129 REMARK 3 S21: -0.2238 S22: -0.0600 S23: 0.0041 REMARK 3 S31: -0.2341 S32: 0.0009 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 13 REMARK 3 RESIDUE RANGE : C 101 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6776 0.8556 70.2701 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0910 REMARK 3 T33: 0.0166 T12: 0.0020 REMARK 3 T13: -0.0087 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.2852 L22: 1.3118 REMARK 3 L33: 0.8380 L12: 0.1782 REMARK 3 L13: -0.7345 L23: -0.1407 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: -0.1311 S13: -0.0433 REMARK 3 S21: 0.0033 S22: 0.0379 S23: -0.0427 REMARK 3 S31: 0.0432 S32: -0.1013 S33: 0.0096 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 13 REMARK 3 RESIDUE RANGE : D 101 D 113 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0546 -0.0851 -6.1284 REMARK 3 T TENSOR REMARK 3 T11: 0.2006 T22: 0.0861 REMARK 3 T33: 0.0073 T12: 0.1090 REMARK 3 T13: 0.0180 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.1632 L22: 0.6655 REMARK 3 L33: 1.4297 L12: -0.3288 REMARK 3 L13: 0.6456 L23: 0.5755 REMARK 3 S TENSOR REMARK 3 S11: 0.1082 S12: 0.1093 S13: 0.0751 REMARK 3 S21: -0.2071 S22: -0.1273 S23: -0.0348 REMARK 3 S31: -0.0685 S32: -0.0011 S33: 0.0191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 3V1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000069493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.1.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 69.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.30700 REMARK 200 R SYM FOR SHELL (I) : 0.30700 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KNV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NA-ACETATE PH 4.25-5.5, 10MM REMARK 280 CACL2 OR CAAC2, 4-8% (W/V) OF PEG8000, TEMPERATURE 293K, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.00400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.81600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.00400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.81600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 293 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 LYS B 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 1 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 16 110.26 -160.20 REMARK 500 PRO A 105 -169.92 -79.99 REMARK 500 TRP A 228 54.24 31.98 REMARK 500 PRO B 105 -168.20 -74.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V20 RELATED DB: PDB REMARK 900 RELATED ID: 3V21 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE RESIDUES AT POSITION 110, 111, AND 130 ARE REMARK 999 CORRECTLY IDENTIFIED AND THE BIOCHEMICAL DATA SHOWS THAT THE REMARK 999 PROTEIN IS ACTIVE. DBREF 3V1Z A 1 293 UNP Q8RT53 Q8RT53_GEOSE 1 293 DBREF 3V1Z B 1 293 UNP Q8RT53 Q8RT53_GEOSE 1 293 DBREF 3V1Z C 1 13 PDB 3V1Z 3V1Z 1 13 DBREF 3V1Z D 1 13 PDB 3V1Z 3V1Z 1 13 SEQADV 3V1Z PHE A 110 UNP Q8RT53 LEU 110 SEE REMARK 999 SEQADV 3V1Z ASP A 111 UNP Q8RT53 HIS 111 SEE REMARK 999 SEQADV 3V1Z SER A 130 UNP Q8RT53 THR 130 SEE REMARK 999 SEQADV 3V1Z ALA A 226 UNP Q8RT53 ARG 226 ENGINEERED MUTATION SEQADV 3V1Z PHE B 110 UNP Q8RT53 LEU 110 SEE REMARK 999 SEQADV 3V1Z ASP B 111 UNP Q8RT53 HIS 111 SEE REMARK 999 SEQADV 3V1Z SER B 130 UNP Q8RT53 THR 130 SEE REMARK 999 SEQADV 3V1Z ALA B 226 UNP Q8RT53 ARG 226 ENGINEERED MUTATION SEQRES 1 A 293 MET THR THR ASN LEU THR ASN SER ASN CYS VAL GLU GLU SEQRES 2 A 293 TYR LYS GLU ASN GLY LYS THR LYS ILE ARG ILE LYS PRO SEQRES 3 A 293 PHE ASN ALA LEU ILE GLU LEU TYR HIS HIS GLN THR PRO SEQRES 4 A 293 THR GLY SER ILE LYS GLU ASN LEU ASP LYS LEU GLU ASN SEQRES 5 A 293 TYR VAL LYS ASP VAL VAL LYS ALA LYS GLY LEU ALA ILE SEQRES 6 A 293 PRO THR SER GLY ALA PHE SER ASN THR ARG GLY THR TRP SEQRES 7 A 293 PHE GLU VAL MET ILE ALA ILE GLN SER TRP ASN TYR ARG SEQRES 8 A 293 VAL LYS ARG GLU LEU ASN ASP TYR LEU ILE ILE LYS MET SEQRES 9 A 293 PRO ASN VAL LYS THR PHE ASP PHE ARG LYS ILE PHE ASP SEQRES 10 A 293 ASN GLU THR ARG GLU LYS LEU HIS GLN LEU GLU LYS SER SEQRES 11 A 293 LEU LEU THR HIS LYS GLN GLN VAL ARG LEU ILE THR SER SEQRES 12 A 293 ASN PRO ASP LEU LEU ILE ILE ARG GLN LYS ASP LEU ILE SEQRES 13 A 293 LYS SER GLU TYR ASN LEU PRO ILE ASN LYS LEU THR HIS SEQRES 14 A 293 GLU ASN ILE ASP VAL ALA LEU THR LEU PHE LYS ASP ILE SEQRES 15 A 293 GLU GLY LYS CYS LYS TRP ASP SER LEU VAL ALA GLY VAL SEQRES 16 A 293 GLY LEU LYS THR SER LEU ARG PRO ASP ARG ARG LEU GLN SEQRES 17 A 293 LEU VAL HIS GLU GLY ASN ILE LEU LYS SER LEU PHE ALA SEQRES 18 A 293 HIS LEU LYS MET ALA TYR TRP ASN PRO LYS ALA GLU PHE SEQRES 19 A 293 LYS TYR TYR GLY ALA SER SER GLU PRO VAL SER LYS ALA SEQRES 20 A 293 ASP ASP ASP ALA LEU GLN THR ALA ALA THR HIS THR ILE SEQRES 21 A 293 VAL ASN VAL ASN SER THR PRO GLU ARG ALA VAL ASP ASP SEQRES 22 A 293 ILE PHE SER LEU THR SER PHE GLU ASP ILE ASP LYS MET SEQRES 23 A 293 LEU ASP GLN ILE ILE LYS LYS SEQRES 1 B 293 MET THR THR ASN LEU THR ASN SER ASN CYS VAL GLU GLU SEQRES 2 B 293 TYR LYS GLU ASN GLY LYS THR LYS ILE ARG ILE LYS PRO SEQRES 3 B 293 PHE ASN ALA LEU ILE GLU LEU TYR HIS HIS GLN THR PRO SEQRES 4 B 293 THR GLY SER ILE LYS GLU ASN LEU ASP LYS LEU GLU ASN SEQRES 5 B 293 TYR VAL LYS ASP VAL VAL LYS ALA LYS GLY LEU ALA ILE SEQRES 6 B 293 PRO THR SER GLY ALA PHE SER ASN THR ARG GLY THR TRP SEQRES 7 B 293 PHE GLU VAL MET ILE ALA ILE GLN SER TRP ASN TYR ARG SEQRES 8 B 293 VAL LYS ARG GLU LEU ASN ASP TYR LEU ILE ILE LYS MET SEQRES 9 B 293 PRO ASN VAL LYS THR PHE ASP PHE ARG LYS ILE PHE ASP SEQRES 10 B 293 ASN GLU THR ARG GLU LYS LEU HIS GLN LEU GLU LYS SER SEQRES 11 B 293 LEU LEU THR HIS LYS GLN GLN VAL ARG LEU ILE THR SER SEQRES 12 B 293 ASN PRO ASP LEU LEU ILE ILE ARG GLN LYS ASP LEU ILE SEQRES 13 B 293 LYS SER GLU TYR ASN LEU PRO ILE ASN LYS LEU THR HIS SEQRES 14 B 293 GLU ASN ILE ASP VAL ALA LEU THR LEU PHE LYS ASP ILE SEQRES 15 B 293 GLU GLY LYS CYS LYS TRP ASP SER LEU VAL ALA GLY VAL SEQRES 16 B 293 GLY LEU LYS THR SER LEU ARG PRO ASP ARG ARG LEU GLN SEQRES 17 B 293 LEU VAL HIS GLU GLY ASN ILE LEU LYS SER LEU PHE ALA SEQRES 18 B 293 HIS LEU LYS MET ALA TYR TRP ASN PRO LYS ALA GLU PHE SEQRES 19 B 293 LYS TYR TYR GLY ALA SER SER GLU PRO VAL SER LYS ALA SEQRES 20 B 293 ASP ASP ASP ALA LEU GLN THR ALA ALA THR HIS THR ILE SEQRES 21 B 293 VAL ASN VAL ASN SER THR PRO GLU ARG ALA VAL ASP ASP SEQRES 22 B 293 ILE PHE SER LEU THR SER PHE GLU ASP ILE ASP LYS MET SEQRES 23 B 293 LEU ASP GLN ILE ILE LYS LYS SEQRES 1 C 13 DT DC DG DC DG DC DC DG DG DC DG DC DG SEQRES 1 D 13 DT DC DG DC DG DC DC DG DG DC DG DC DG FORMUL 5 HOH *218(H2 O) HELIX 1 1 LYS A 25 HIS A 35 1 11 HELIX 2 2 SER A 42 LYS A 61 1 20 HELIX 3 3 THR A 67 ARG A 94 1 28 HELIX 4 4 ASP A 111 PHE A 116 5 6 HELIX 5 5 ASP A 117 LEU A 132 1 16 HELIX 6 6 LYS A 153 ILE A 156 5 4 HELIX 7 7 LYS A 157 LEU A 162 5 6 HELIX 8 8 THR A 168 THR A 177 1 10 HELIX 9 9 LEU A 178 ASP A 181 5 4 HELIX 10 10 LYS A 187 ASP A 189 5 3 HELIX 11 11 ARG A 206 TYR A 227 1 22 HELIX 12 12 SER A 245 LEU A 252 1 8 HELIX 13 13 ALA A 256 ILE A 260 5 5 HELIX 14 14 SER A 279 LYS A 292 1 14 HELIX 15 15 ASN B 4 SER B 8 5 5 HELIX 16 16 LYS B 25 HIS B 35 1 11 HELIX 17 17 SER B 42 GLY B 62 1 21 HELIX 18 18 THR B 67 ARG B 94 1 28 HELIX 19 19 ASP B 111 PHE B 116 5 6 HELIX 20 20 ASP B 117 LEU B 131 1 15 HELIX 21 21 LYS B 153 ILE B 156 5 4 HELIX 22 22 LYS B 157 LEU B 162 5 6 HELIX 23 23 THR B 168 THR B 177 1 10 HELIX 24 24 LEU B 178 GLU B 183 5 6 HELIX 25 25 ARG B 206 TYR B 227 1 22 HELIX 26 26 SER B 245 LEU B 252 1 8 HELIX 27 27 ALA B 256 ILE B 260 5 5 HELIX 28 28 SER B 279 ILE B 291 1 13 SHEET 1 A 2 VAL A 11 GLU A 16 0 SHEET 2 A 2 LYS A 19 ILE A 24 -1 O LYS A 21 N TYR A 14 SHEET 1 B 5 TYR A 99 LYS A 103 0 SHEET 2 B 5 LEU A 147 ARG A 151 -1 O LEU A 148 N ILE A 102 SHEET 3 B 5 LEU A 191 LYS A 198 -1 O ALA A 193 N ILE A 149 SHEET 4 B 5 LYS A 235 SER A 240 1 O ALA A 239 N LYS A 198 SHEET 5 B 5 ASP A 273 SER A 276 1 O PHE A 275 N SER A 240 SHEET 1 C 2 VAL B 11 GLU B 16 0 SHEET 2 C 2 LYS B 19 ILE B 24 -1 O LYS B 21 N TYR B 14 SHEET 1 D 5 TYR B 99 LYS B 103 0 SHEET 2 D 5 LEU B 147 ARG B 151 -1 O LEU B 148 N ILE B 102 SHEET 3 D 5 LEU B 191 LYS B 198 -1 O ALA B 193 N ILE B 149 SHEET 4 D 5 LYS B 235 SER B 240 1 O TYR B 237 N GLY B 196 SHEET 5 D 5 ASP B 273 SER B 276 1 O PHE B 275 N SER B 240 CRYST1 72.008 83.632 123.336 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008108 0.00000